Query 034631
Match_columns 89
No_of_seqs 47 out of 49
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 07:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034631.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034631hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wx9a1 d.15.1.1 (A:8-80) Larg 46.1 2.8 0.0002 23.5 0.6 23 65-87 40-62 (73)
2 d2faza1 d.15.1.1 (A:1-76) Ubiq 44.5 3.6 0.00026 23.4 1.0 21 65-85 42-62 (76)
3 d1wgha_ d.15.1.1 (A:) Ubiquiti 40.6 4.7 0.00034 25.1 1.2 20 64-83 63-82 (116)
4 d1bt0a_ d.15.1.1 (A:) Rub1 {Mo 39.4 4.9 0.00036 22.1 1.0 21 64-84 39-59 (73)
5 d1wgda_ d.15.1.1 (A:) Homocyst 39.3 3.3 0.00024 24.5 0.2 20 65-84 51-70 (93)
6 d1we6a_ d.15.1.1 (A:) Splicing 37.0 4.8 0.00035 24.8 0.7 20 65-84 71-90 (111)
7 d1z2ma2 d.15.1.1 (A:79-154) In 36.4 6.1 0.00044 21.8 1.1 20 65-84 43-62 (76)
8 d1fova_ c.47.1.1 (A:) Glutared 36.4 6.7 0.00049 21.6 1.3 37 34-76 25-63 (82)
9 d1ngra_ a.77.1.2 (A:) p75 low 36.0 2.4 0.00018 24.7 -0.8 18 47-69 12-29 (85)
10 d2bwfa1 d.15.1.1 (A:2-74) DSK2 35.8 6.1 0.00044 21.9 1.0 20 65-84 40-59 (73)
11 d1ttna1 d.15.1.1 (A:21-100) De 34.1 4.3 0.00031 22.9 0.1 20 65-84 43-62 (80)
12 d1wh3a_ d.15.1.1 (A:) 2'-5'-ol 33.3 4.7 0.00034 23.1 0.2 19 65-83 47-65 (87)
13 d2zeqa1 d.15.1.1 (A:1-78) Ubiq 32.0 7.7 0.00056 21.9 1.0 24 59-84 38-61 (78)
14 d1uela_ d.15.1.1 (A:) Ubiquiti 31.4 7.8 0.00057 22.3 1.0 21 64-84 42-62 (95)
15 d1ogwa_ d.15.1.1 (A:) Ubiquiti 30.8 8.5 0.00062 21.2 1.1 20 65-84 40-59 (76)
16 d1wx8a1 d.15.1.1 (A:8-90) 4931 29.1 6.8 0.0005 22.2 0.5 35 45-84 34-68 (83)
17 d1m94a_ d.15.1.1 (A:) Ubiquiti 28.5 5.9 0.00043 22.1 0.1 19 65-83 41-59 (73)
18 d2c9wb1 d.15.1.1 (B:2-104) Elo 28.5 6.7 0.00049 24.1 0.3 20 65-84 40-59 (103)
19 d1z2ma1 d.15.1.1 (A:3-78) Inte 28.0 8.1 0.00059 21.6 0.6 20 65-84 40-61 (76)
20 d1wy8a1 d.15.1.1 (A:8-83) Ubiq 27.0 7 0.00051 22.1 0.2 21 64-84 41-61 (76)
21 d1zkha1 d.15.1.1 (A:1-86) Spli 26.7 7.3 0.00053 22.6 0.3 20 65-84 51-70 (86)
22 d1v54d_ f.23.1.1 (D:) Mitochon 26.1 13 0.00092 24.7 1.5 27 1-27 10-40 (144)
23 d1oqya4 d.15.1.1 (A:1-77) Ubiq 23.2 10 0.00075 21.0 0.5 20 65-84 45-64 (77)
24 d1x1ma1 d.15.1.1 (A:8-101) Ubi 23.0 11 0.00077 23.0 0.5 37 46-84 43-79 (94)
25 d1wjua_ d.15.1.1 (A:) NEDD8 ul 22.7 10 0.00073 22.6 0.4 19 65-83 59-77 (100)
26 d1yqba1 d.15.1.1 (A:15-98) Ubi 22.2 10 0.00076 21.4 0.3 25 58-84 41-65 (84)
27 d3bwud1 b.167.1.1 (D:2-122) Ou 22.2 12 0.00091 22.5 0.7 36 44-79 12-47 (121)
28 d1j8ca_ d.15.1.1 (A:) Ubiquiti 22.1 13 0.00098 21.7 0.9 35 45-84 56-90 (103)
No 1
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.14 E-value=2.8 Score=23.48 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=18.7
Q ss_pred hhhhhccCeeccCCccccccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADNAMN 87 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~~~n 87 (89)
+||.-.+||.++|+.+++|-..+
T Consensus 40 ~qrLi~~Gk~L~d~~tL~dy~i~ 62 (73)
T d1wx9a1 40 KQRLIYQGRVLQDDKKLQEYNVG 62 (73)
T ss_dssp TCCCEETTEECCSSSBHHHHTCT
T ss_pred HEEEEECCeEccCCCCHHHhCCC
Confidence 68999999999999877775433
No 2
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.55 E-value=3.6 Score=23.44 Aligned_cols=21 Identities=38% Similarity=0.427 Sum_probs=17.8
Q ss_pred hhhhhccCeeccCCccccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADNA 85 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~~ 85 (89)
+||.-.+||.++|+.+++|..
T Consensus 42 ~qrLi~~Gk~L~D~~tL~~y~ 62 (76)
T d2faza1 42 LQRLFYRGKQMEDGHTLFDYE 62 (76)
T ss_dssp GEEEEETTEECCTTCBTTTTT
T ss_pred HeEEEEeeEeccCCCcHHHcC
Confidence 689999999999999777743
No 3
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.61 E-value=4.7 Score=25.14 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=17.6
Q ss_pred chhhhhccCeeccCCccccc
Q 034631 64 WRQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 64 ~rqr~q~nGk~~ed~n~~~d 83 (89)
-+||.-.+||.++|..+++|
T Consensus 63 ~~qRLiy~Gk~L~D~~tL~~ 82 (116)
T d1wgha_ 63 NILRLIYQGRFLHGNVTLGA 82 (116)
T ss_dssp TTEEEEETTEEECSSCBTTT
T ss_pred HHeEEEECCEEecCCCCHHH
Confidence 47999999999999987776
No 4
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=39.44 E-value=4.9 Score=22.13 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=17.9
Q ss_pred chhhhhccCeeccCCcccccc
Q 034631 64 WRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 64 ~rqr~q~nGk~~ed~n~~~d~ 84 (89)
-+||.--+||.++|+.+++|.
T Consensus 39 ~~qrLi~~Gk~L~d~~tL~~y 59 (73)
T d1bt0a_ 39 VQQRLIYAGKQLADDKTAKDY 59 (73)
T ss_dssp GGEEEEETTEECCTTSBTGGG
T ss_pred HHEEEEECCeEcCCCCcHHHc
Confidence 468999999999999877774
No 5
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.26 E-value=3.3 Score=24.50 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=17.5
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||.-.+||.++|..+++|-
T Consensus 51 ~qrLIy~Gk~L~D~~~L~d~ 70 (93)
T d1wgda_ 51 DQRLIYSGKLLLDHQCLRDL 70 (93)
T ss_dssp TCEEEETTEECCSSSCHHHH
T ss_pred HEEEEECCeEccCCCCHHHh
Confidence 69999999999999977763
No 6
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=36.95 E-value=4.8 Score=24.81 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=17.5
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||....||.++|.++++|-
T Consensus 71 ~QrLi~~Gk~L~D~~tL~~y 90 (111)
T d1we6a_ 71 KQKLSGKAGFLKDNMSLAHY 90 (111)
T ss_dssp TSEEECSSSBCCTTSBTTTT
T ss_pred ceEEEEeeEEccccCCHHHc
Confidence 68999999999999977773
No 7
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.45 E-value=6.1 Score=21.82 Aligned_cols=20 Identities=25% Similarity=0.131 Sum_probs=17.7
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
.||.-.+||.++|..+++|-
T Consensus 43 ~qrL~~~gk~L~d~~tL~~y 62 (76)
T d1z2ma2 43 LFWLTFEGKPLEDQLPLGEY 62 (76)
T ss_dssp GEEEEETTEECCTTSBGGGG
T ss_pred HeEEEECCeECCCCCcHHHc
Confidence 79999999999998887774
No 8
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}
Probab=36.36 E-value=6.7 Score=21.62 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=24.9
Q ss_pred hhceeeec--ccccchhhhhhcCCCCCCCCccchhhhhccCeecc
Q 034631 34 GLVLSSKD--KEARTKEENHKLLNGNSVDPADWRQRTQVNGKVLE 76 (89)
Q Consensus 34 ~Lp~s~Kd--kd~r~kEe~hkllNGn~vd~~D~rqr~q~nGk~~e 76 (89)
+++|.++| +|...++|+.+.-...+| |.+.+||+++-
T Consensus 25 ~i~y~~~di~~~~~~~~~~~~~~g~~tv------P~i~i~~~~IG 63 (82)
T d1fova_ 25 GVSFQELPIDGNAAKREEMIKRSGRTTV------PQIFIDAQHIG 63 (82)
T ss_dssp TCCCEEEECTTCSHHHHHHHHHHSSCCS------CEEEETTEEEE
T ss_pred CCCeEEEeccchHHHHHHHHHHhCCCCC------CeEEECCEEEe
Confidence 67898887 455566677776433333 67889999873
No 9
>d1ngra_ a.77.1.2 (A:) p75 low affinity neurotrophin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=35.99 E-value=2.4 Score=24.71 Aligned_cols=18 Identities=50% Similarity=0.914 Sum_probs=13.6
Q ss_pred hhhhhhcCCCCCCCCccchhhhh
Q 034631 47 KEENHKLLNGNSVDPADWRQRTQ 69 (89)
Q Consensus 47 kEe~hkllNGn~vd~~D~rqr~q 69 (89)
+++.-++|||+ |||.=..
T Consensus 12 r~~l~~~Ldg~-----dWr~LA~ 29 (85)
T d1ngra_ 12 REEVEKLLNGD-----TWRHLAG 29 (85)
T ss_dssp THHHHHHSCTT-----HHHHHHH
T ss_pred HHHHHHHcCCC-----CHHHHHH
Confidence 46899999974 8986443
No 10
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.79 E-value=6.1 Score=21.87 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=17.3
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||.-.+||.++|..+++|.
T Consensus 40 ~qrLi~~Gk~L~D~~tL~~~ 59 (73)
T d2bwfa1 40 NQRLIYSGKILKDDQTVESY 59 (73)
T ss_dssp GEEEEETTEECCTTSBTGGG
T ss_pred HeEEEECCeEccCCCcHHHC
Confidence 58999999999999977774
No 11
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.14 E-value=4.3 Score=22.94 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=17.2
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||.-.+||.++|..+++|-
T Consensus 43 ~qrLi~~Gk~L~d~~tL~~y 62 (80)
T d1ttna1 43 SQRWFFSGRPLTDKMKFEEL 62 (80)
T ss_dssp TCEEEETTEECCTTSHHHHC
T ss_pred cEEEEECceEcCCCCcHHHc
Confidence 68999999999998877763
No 12
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.31 E-value=4.7 Score=23.09 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=16.5
Q ss_pred hhhhhccCeeccCCccccc
Q 034631 65 RQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d 83 (89)
+||.-.+||.++|..+++|
T Consensus 47 ~qrLi~~Gk~L~d~~tL~~ 65 (87)
T d1wh3a_ 47 QQQLEFQGQVLQDWLGLGI 65 (87)
T ss_dssp TEEEEETTEECCSSSBHHH
T ss_pred HeEEEeeceEcCCCCcHHH
Confidence 5899999999999887666
No 13
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.99 E-value=7.7 Score=21.87 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.3
Q ss_pred CCCccchhhhhccCeeccCCcccccc
Q 034631 59 VDPADWRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 59 vd~~D~rqr~q~nGk~~ed~n~~~d~ 84 (89)
+.|. .||.--+||.++|+.+++|.
T Consensus 38 ip~~--~qrLi~~Gk~L~d~~tL~~y 61 (78)
T d2zeqa1 38 VPAD--QLRVIFAGKELPNHLTVQNC 61 (78)
T ss_dssp CCGG--GEEEEETTEEECTTCBGGGS
T ss_pred cChh--HeEEEEeeeEcCCCCCHHHc
Confidence 4444 48999999999999887774
No 14
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.45 E-value=7.8 Score=22.27 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=17.8
Q ss_pred chhhhhccCeeccCCcccccc
Q 034631 64 WRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 64 ~rqr~q~nGk~~ed~n~~~d~ 84 (89)
-+||.-.+||.++|+.+++|.
T Consensus 42 ~~qrLi~~Gk~L~d~~tL~~y 62 (95)
T d1uela_ 42 AGQKLIYAGKILNDDTALKEY 62 (95)
T ss_dssp TTEEEEETTEECCTTSBGGGG
T ss_pred cceEEEECCeEccCCCcHHHc
Confidence 378999999999998877774
No 15
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.83 E-value=8.5 Score=21.23 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=17.1
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
.||...+||.++|..+++|.
T Consensus 40 ~qrL~~~Gk~L~d~~tL~~y 59 (76)
T d1ogwa_ 40 QQRLIFAGKQLEDGRTLSDY 59 (76)
T ss_dssp GEEEEETTEECCTTSBGGGG
T ss_pred HEEeEECCeEcCCCCCHHHc
Confidence 48999999999998877774
No 16
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.14 E-value=6.8 Score=22.22 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=24.5
Q ss_pred cchhhhhhcCCCCCCCCccchhhhhccCeeccCCcccccc
Q 034631 45 RTKEENHKLLNGNSVDPADWRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 45 r~kEe~hkllNGn~vd~~D~rqr~q~nGk~~ed~n~~~d~ 84 (89)
..|+..++.. ++.|. +||...+||.++|..+++|.
T Consensus 34 ~lK~~I~~~~---~v~~~--~qrL~f~Gk~L~d~~tL~~~ 68 (83)
T d1wx8a1 34 RFKKQISKYL---HCNAD--RLVLIFTGKILRDQDILSQR 68 (83)
T ss_dssp HHHHHHHHHT---CSCTT--TBCCEETTEECCTTSCHHHH
T ss_pred HHHHHHHHHh---CCChh--HEEEEEEhhccccCCcHHHc
Confidence 4555555544 34443 78999999999998877763
No 17
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.49 E-value=5.9 Score=22.08 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=16.8
Q ss_pred hhhhhccCeeccCCccccc
Q 034631 65 RQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d 83 (89)
+||.-.+||.++|+.+++|
T Consensus 41 ~q~Li~~Gk~L~d~~tL~~ 59 (73)
T d1m94a_ 41 KIVLQKGGSVLKDHISLED 59 (73)
T ss_dssp SEEEESSSCEECTTSBHHH
T ss_pred EEEEEEEeEEecccCcHHH
Confidence 7899999999999987766
No 18
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.47 E-value=6.7 Score=24.11 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.7
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
.||.--+||+++|+.+++|-
T Consensus 40 ~QrLi~~Gk~L~D~~TL~dY 59 (103)
T d2c9wb1 40 EQRLYKDDQLLDDGKTLGEC 59 (103)
T ss_dssp GEEEEETTEECCTTSBHHHH
T ss_pred cEEEEECCEEcCCCCCHHHc
Confidence 79999999999999987773
No 19
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.03 E-value=8.1 Score=21.61 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=15.8
Q ss_pred hhhhhc--cCeeccCCcccccc
Q 034631 65 RQRTQV--NGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~--nGk~~ed~n~~~d~ 84 (89)
+||.-. .||.++|+.+++|.
T Consensus 40 ~QrLi~~~~Gk~L~D~~tL~~y 61 (76)
T d1z2ma1 40 QQRLAVHPSGVALQDRVPLASQ 61 (76)
T ss_dssp GEEEEEETTCCBCCSSSCSGGG
T ss_pred cEEEEEcCCCeeccCCCcHHHc
Confidence 677777 59999999877764
No 20
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.98 E-value=7 Score=22.09 Aligned_cols=21 Identities=38% Similarity=0.297 Sum_probs=17.8
Q ss_pred chhhhhccCeeccCCcccccc
Q 034631 64 WRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 64 ~rqr~q~nGk~~ed~n~~~d~ 84 (89)
-+||.--+||.++|+.+++|.
T Consensus 41 ~~qrLi~~Gk~L~d~~tL~~y 61 (76)
T d1wy8a1 41 ECQRLFYRGKQLENGYTLFDY 61 (76)
T ss_dssp TTEEEEETTEECCSSSBHHHH
T ss_pred hhcEEEEEeeEecCCCCHHHc
Confidence 479999999999999877763
No 21
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.69 E-value=7.3 Score=22.59 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.5
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|-
T Consensus 51 ~q~Li~~Gk~L~D~~tL~dY 70 (86)
T d1zkha1 51 KQKLQYEGIFIKDSNSLAYY 70 (86)
T ss_dssp TEEEEETTEEECTTSBHHHH
T ss_pred HEEEEeCCcCcCCCCCHHHc
Confidence 68999999999998887774
No 22
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.13 E-value=13 Score=24.66 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=22.3
Q ss_pred Ccchhhhhccc----ceeeeehhhHHHHHHh
Q 034631 1 MTLYIGREASK----RICAETTTEINLLVDN 27 (89)
Q Consensus 1 M~~Yi~ReasK----Ri~~E~tvEl~LL~ek 27 (89)
+|.|+.|--.- |.+-|.|-|+.-|.||
T Consensus 10 ~P~Y~D~~d~P~P~i~~~~e~t~ei~aLreK 40 (144)
T d1v54d_ 10 LPSYVDRRDYPLPDVAHVKNLSASQKALKEK 40 (144)
T ss_dssp SCCCCCBTTBCSCSSCSCCCCCHHHHHHHHH
T ss_pred CccccCCCCCCCCCchhhhcCCHHHHHHHHH
Confidence 58899986653 7788999999999987
No 23
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.24 E-value=10 Score=20.97 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=17.0
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||.-.+||.++|..+++|-
T Consensus 45 ~qrLi~~Gk~L~D~~tL~~y 64 (77)
T d1oqya4 45 GQKLIYAGKILSDDVPIRDY 64 (77)
T ss_dssp EEEEESSSSEECSSSBTTTT
T ss_pred HEEeEECCcCccCCCcHHHc
Confidence 68999999999997777774
No 24
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.98 E-value=11 Score=23.01 Aligned_cols=37 Identities=16% Similarity=-0.039 Sum_probs=24.5
Q ss_pred chhhhhhcCCCCCCCCccchhhhhccCeeccCCcccccc
Q 034631 46 TKEENHKLLNGNSVDPADWRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 46 ~kEe~hkllNGn~vd~~D~rqr~q~nGk~~ed~n~~~d~ 84 (89)
.|+...+-+.-+..+ --+||.-.+||.++|+.+++|.
T Consensus 43 lK~~i~~~~~~~~P~--p~~~rLIy~Gk~L~D~~tL~~y 79 (94)
T d1x1ma1 43 LKQLIAGKLQESVPD--PELIDLIYCGRKLKDDQTLDFY 79 (94)
T ss_dssp HHHHHHHHCTTTCCC--SSSEEEEETTEECCTTCBHHHH
T ss_pred HHHHHHHHcccCCCC--hhheEEEECCeEECCCccHHHc
Confidence 445444444323223 3589999999999999977763
No 25
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.65 E-value=10 Score=22.63 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=16.8
Q ss_pred hhhhhccCeeccCCccccc
Q 034631 65 RQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d 83 (89)
+||...+||.++|..+++|
T Consensus 59 ~qkLi~~Gk~L~d~~tL~~ 77 (100)
T d1wjua_ 59 YIKIVINKKQLQLGKTLEE 77 (100)
T ss_dssp TCEEEETTEECCTTSBHHH
T ss_pred eEEEEEcccCcCCCcCHHH
Confidence 8999999999999876666
No 26
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.21 E-value=10 Score=21.43 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=19.3
Q ss_pred CCCCccchhhhhccCeeccCCcccccc
Q 034631 58 SVDPADWRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 58 ~vd~~D~rqr~q~nGk~~ed~n~~~d~ 84 (89)
++.|. +||.-.+||.++|..+++|.
T Consensus 41 gi~~~--~qrL~~~Gk~L~D~~tL~~y 65 (84)
T d1yqba1 41 KAHPD--QLVLIFAGKILKDPDSLAQC 65 (84)
T ss_dssp TCCGG--GEEEEETTEECCTTSBHHHH
T ss_pred CcCch--hEEEEEeeeeccccCcHHHc
Confidence 44443 58999999999998877774
No 27
>d3bwud1 b.167.1.1 (D:2-122) Outer membrane usher protein FimD {Escherichia coli [TaxId: 562]}
Probab=22.17 E-value=12 Score=22.52 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=30.7
Q ss_pred ccchhhhhhcCCCCCCCCccchhhhhccCeeccCCc
Q 034631 44 ARTKEENHKLLNGNSVDPADWRQRTQVNGKVLEDGN 79 (89)
Q Consensus 44 ~r~kEe~hkllNGn~vd~~D~rqr~q~nGk~~ed~n 79 (89)
++..-+..++-+||.+-|-.++-.+.+||+.+...+
T Consensus 12 ~~~~~Dls~F~~~n~~~pG~Y~vdI~vN~~~~~~~~ 47 (121)
T d3bwud1 12 PQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRD 47 (121)
T ss_dssp TTHHHHHHHHHTTCSSCSEEEEEEEEETTEEEEEEE
T ss_pred CCCceeHHHhccCCCCCCeEEEEEEEECCeEeeeEE
Confidence 344558889999999999999999999999987665
No 28
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.11 E-value=13 Score=21.68 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=23.7
Q ss_pred cchhhhhhcCCCCCCCCccchhhhhccCeeccCCcccccc
Q 034631 45 RTKEENHKLLNGNSVDPADWRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 45 r~kEe~hkllNGn~vd~~D~rqr~q~nGk~~ed~n~~~d~ 84 (89)
..|+...... .+++. +||.-.+||.++|..+++|.
T Consensus 56 ~LK~~I~~~~---gi~~~--~qrLi~~Gk~L~D~~tL~~~ 90 (103)
T d1j8ca_ 56 QFKEAISKRF---KSQTD--QLVLIFAGKILKDQDTLIQH 90 (103)
T ss_dssp HHHHHHHHHH---CSCSS--SEEEEETTEEESTTSCGGGT
T ss_pred HHHHHHHHHH---CcCHH--HeeeeeeeecccCCCcHHHc
Confidence 3444444443 35553 58999999999998877763
Done!