Query 034636
Match_columns 88
No_of_seqs 103 out of 202
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 04:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3484 Cyclin-dependent prote 100.0 6.8E-54 1.5E-58 290.2 8.5 81 1-81 3-83 (91)
2 PLN00010 cyclin-dependent kina 100.0 8.1E-53 1.8E-57 283.4 7.9 83 1-83 1-83 (86)
3 PF01111 CKS: Cyclin-dependent 100.0 3.1E-51 6.8E-56 266.8 5.9 70 3-72 1-70 (70)
4 PTZ00453 cyclin-dependent kina 100.0 3.9E-49 8.5E-54 269.8 7.5 72 1-72 25-96 (96)
5 PF13783 DUF4177: Domain of un 74.3 7.7 0.00017 23.3 3.9 52 14-70 1-61 (61)
6 PF05972 APC_15aa: APC 15 resi 57.8 5.2 0.00011 19.8 0.7 12 3-14 5-16 (16)
7 PF09355 Phage_Gp19: Phage pro 42.1 18 0.00038 25.1 1.6 20 33-52 89-108 (116)
8 PF07254 DUF1434: Protein of u 42.0 14 0.00031 26.3 1.2 12 35-46 116-127 (132)
9 PF13975 gag-asp_proteas: gag- 32.8 30 0.00064 21.2 1.4 18 34-51 31-48 (72)
10 cd06405 PB1_Mekk2_3 The PB1 do 29.7 47 0.001 22.5 2.0 23 57-79 6-28 (79)
11 PF01352 KRAB: KRAB box; Inte 29.2 23 0.0005 20.4 0.4 14 35-48 9-22 (41)
12 PF15581 Imm35: Immunity prote 28.2 23 0.0005 24.6 0.3 12 35-46 37-48 (93)
13 cd00251 Mth_Ecto The ectodomai 25.3 45 0.00097 24.7 1.5 24 4-27 9-32 (176)
14 PF06262 DUF1025: Possibl zinc 24.7 20 0.00044 24.2 -0.4 17 61-77 49-65 (97)
15 KOG0741 AAA+-type ATPase [Post 21.4 69 0.0015 29.1 2.1 19 37-67 312-330 (744)
16 PF10225 DUF2215: Uncharacteri 21.3 37 0.0008 26.1 0.4 17 31-47 187-203 (249)
17 cd08056 MPN_PRP8 Mpr1p, Pad1p 20.5 57 0.0012 25.7 1.3 46 7-56 66-115 (252)
18 PHA02969 hypothetical protein; 20.2 38 0.00082 24.1 0.2 22 8-29 11-38 (111)
No 1
>KOG3484 consensus Cyclin-dependent protein kinase CDC28, regulatory subunit CKS1, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.8e-54 Score=290.22 Aligned_cols=81 Identities=74% Similarity=1.296 Sum_probs=76.8
Q ss_pred CCCccccCCcCCCceeEEEEEcCHHHHhhCCCCCCcCHHHHHHhcccccCceeeeeeeCCCceeEEeeccCCchhhhHHH
Q 034636 1 MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQ 80 (88)
Q Consensus 1 ~~~I~YS~kY~Dd~yeYRhViLpke~~k~vpk~~LlsE~EWR~LGIqqS~GW~Hy~~h~pEphiLlFRRpl~~~~~~~~~ 80 (88)
|++|+||+||+||+||||||+||++++|.|||+|||||+|||+||||||+||+|||||.|||||||||||++++++..++
T Consensus 3 ~~qi~YS~kY~Dd~fEYRHV~Lpk~~~K~vPk~rllsE~EWR~lGvqQS~GW~hYmiH~PEpHIlLFrRp~~~~~q~~~~ 82 (91)
T KOG3484|consen 3 MDQIYYSDKYFDDEFEYRHVMLPKEVAKLVPKNRLLSETEWRGLGVQQSLGWVHYMIHAPEPHILLFRRPLNYAQQKTAA 82 (91)
T ss_pred ccceecccccccccceeEEeecCHHHHhhCCccccccHHHHhhhCccccCCeeEEEecCCCceEEEEecccchHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998765443
Q ss_pred H
Q 034636 81 A 81 (88)
Q Consensus 81 ~ 81 (88)
.
T Consensus 83 ~ 83 (91)
T KOG3484|consen 83 T 83 (91)
T ss_pred H
Confidence 3
No 2
>PLN00010 cyclin-dependent kinases regulatory subunit; Provisional
Probab=100.00 E-value=8.1e-53 Score=283.44 Aligned_cols=83 Identities=95% Similarity=1.514 Sum_probs=80.1
Q ss_pred CCCccccCCcCCCceeEEEEEcCHHHHhhCCCCCCcCHHHHHHhcccccCceeeeeeeCCCceeEEeeccCCchhhhHHH
Q 034636 1 MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQ 80 (88)
Q Consensus 1 ~~~I~YS~kY~Dd~yeYRhViLpke~~k~vpk~~LlsE~EWR~LGIqqS~GW~Hy~~h~pEphiLlFRRpl~~~~~~~~~ 80 (88)
|++|+||+||+||+|||||||||++++|.+|+++||||+|||+||||||+||+|||+|+|||||||||||++.+++.+++
T Consensus 1 ~~~I~YS~kY~Dd~yeYRhViLPk~~~k~ipk~~LL~E~EWR~LGIqqS~GW~Hy~~h~pEphILlFrRp~~~~~~~~~~ 80 (86)
T PLN00010 1 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQEAQ 80 (86)
T ss_pred CCccEeCCceeCCCcEEEEEEeCHHHHHhCCcCcccCHHHHHHhccccCCCcEEeeecCCCceEEEEEccCCCCCcccch
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHH
Q 034636 81 AQQ 83 (88)
Q Consensus 81 ~~~ 83 (88)
+++
T Consensus 81 ~~~ 83 (86)
T PLN00010 81 AAQ 83 (86)
T ss_pred hhh
Confidence 765
No 3
>PF01111 CKS: Cyclin-dependent kinase regulatory subunit; InterPro: IPR000789 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In eukaryotes, cyclin-dependent protein kinases interact with cyclins to regulate cell cycle progression, and are required for the G1 and G2 stages of cell division []. The proteins bind to a regulatory subunit, cyclin-dependent kinase regulatory subunit (CKS), which is essential for their function. This regulatory subunit is a small protein of 79 to 150 residues. In yeast (gene CKS1) and in fission yeast (gene suc1) a single isoform is known, while mammals have two highly related isoforms. The regulatory subunits exist as hexamers, formed by the symmetrical assembly of 3 interlocked homodimers, creating an unusual 12-stranded beta-barrel structure []. Through the barrel centre runs a 12A diameter tunnel, lined by 6 exposed helix pairs []. Six kinase units can be modelled to bind the hexameric structure, which may thus act as a hub for cyclin-dependent protein kinase multimerisation [, ].; GO: 0016538 cyclin-dependent protein kinase regulator activity, 0007049 cell cycle; PDB: 1CKS_C 3QY2_B 1QB3_C 1SCE_B 1PUC_A 1DKS_B 2AST_C 1BUH_B 1DKT_B 2ASS_C.
Probab=100.00 E-value=3.1e-51 Score=266.81 Aligned_cols=70 Identities=73% Similarity=1.395 Sum_probs=56.0
Q ss_pred CccccCCcCCCceeEEEEEcCHHHHhhCCCCCCcCHHHHHHhcccccCceeeeeeeCCCceeEEeeccCC
Q 034636 3 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLN 72 (88)
Q Consensus 3 ~I~YS~kY~Dd~yeYRhViLpke~~k~vpk~~LlsE~EWR~LGIqqS~GW~Hy~~h~pEphiLlFRRpl~ 72 (88)
+|+||+||+||+|||||||||+++++++|+++||||+|||+||||||+||+|||+|+|||||||||||+|
T Consensus 1 ~I~YS~kY~Dd~yeYRhViLpk~~~k~vp~~~llsE~EWR~LGIqqS~GW~Hy~~h~pephiLlFrRp~n 70 (70)
T PF01111_consen 1 QIYYSDKYYDDEYEYRHVILPKEIAKLVPKDRLLSEEEWRGLGIQQSPGWEHYMIHKPEPHILLFRRPLN 70 (70)
T ss_dssp G-EEE--EEBSSEEEEEEE--HHHHGTS-CCS---HHHHHHTT--S-TT-EEECETTSSTTEEEEEEECT
T ss_pred CccccccccCCceEEEEEECCHHHHhhCccCcccCHHHHHhhCCccCCCcEEEEEeCCCCcEEEEecCCC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999986
No 4
>PTZ00453 cyclin-dependent kinase; Provisional
Probab=100.00 E-value=3.9e-49 Score=269.84 Aligned_cols=72 Identities=63% Similarity=1.271 Sum_probs=69.8
Q ss_pred CCCccccCCcCCCceeEEEEEcCHHHHhhCCCCCCcCHHHHHHhcccccCceeeeeeeCCCceeEEeeccCC
Q 034636 1 MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLN 72 (88)
Q Consensus 1 ~~~I~YS~kY~Dd~yeYRhViLpke~~k~vpk~~LlsE~EWR~LGIqqS~GW~Hy~~h~pEphiLlFRRpl~ 72 (88)
.++|+||+||+||+|||||||||++++|.+|+++||||+|||+||||||+||+|||+|+|||||||||||++
T Consensus 25 ~~~I~YS~kY~DD~yEYRHViLPk~~~k~ipk~~LL~E~EWR~LGIqqS~GW~HY~~h~pEphILLFRRp~t 96 (96)
T PTZ00453 25 QSKILYSDKYYDDEYEYRHVILPKDFARLVPRSRLMSESEWRQLGVQQSVGWRHYMIHKPEPHVLLFKRPKT 96 (96)
T ss_pred cccceeCCceeCCCcEEEEEEeCHHHHHhCCCCccccHHHHHHhhhccCCCcEEeeecCCCCcEEEEecCCC
Confidence 368999999999999999999999999999999999999999999999999999999999999999999974
No 5
>PF13783 DUF4177: Domain of unknown function (DUF4177)
Probab=74.28 E-value=7.7 Score=23.33 Aligned_cols=52 Identities=25% Similarity=0.442 Sum_probs=34.4
Q ss_pred ceeEEEEEcCHHHHhhCCCCCCcCHHHHHHhcccccCceeeeeeeCC---------CceeEEeecc
Q 034636 14 TYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRP---------EPHIMLFRRP 70 (88)
Q Consensus 14 ~yeYRhViLpke~~k~vpk~~LlsE~EWR~LGIqqS~GW~Hy~~h~p---------EphiLlFRRp 70 (88)
.|||..|.++......++... -++....+| +.||+=-.+..+ ...+|+|+||
T Consensus 1 ~~EYk~v~~~~~~~~~~~~~~--~~~~Ln~~g---~eGWeLV~~~~~~~~~~~g~~~~~~~ifkRe 61 (61)
T PF13783_consen 1 KWEYKVVEVPTGGFFGIDPED--LEEILNEYG---KEGWELVSIIPPFEPGGYGGTEGYVLIFKRE 61 (61)
T ss_pred CcceEEEEEecccccCCCHHH--HHHHHHHHH---hCCcEEEEEEcCCcccCCCCcceEEEEEEcC
Confidence 489999998875433322111 145556666 579987777766 2578999886
No 6
>PF05972 APC_15aa: APC 15 residue motif; InterPro: IPR009240 The 15 aa repeat is found in the APC protein family. It is involved in binding beta-catenin [] along with the IPR009223 from INTERPRO repeats. Many human cancer mutations map to the region around these motifs, and may be involved in disrupting their binding of beta-catenin.; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1JPP_C.
Probab=57.84 E-value=5.2 Score=19.84 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=6.5
Q ss_pred CccccCCcCCCc
Q 034636 3 QIQYSEKYFDDT 14 (88)
Q Consensus 3 ~I~YS~kY~Dd~ 14 (88)
.|.||-||..++
T Consensus 5 P~dyS~kY~e~~ 16 (16)
T PF05972_consen 5 PIDYSLKYSEEQ 16 (16)
T ss_dssp ---CCCCTTT--
T ss_pred ccchhhhccccC
Confidence 478999998763
No 7
>PF09355 Phage_Gp19: Phage protein Gp19/Gp15/Gp42; InterPro: IPR018963 This entry is represented by Mycobacteriophage D29, Gp19. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=42.08 E-value=18 Score=25.10 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=15.9
Q ss_pred CCCcCHHHHHHhcccccCce
Q 034636 33 NRLLSETEWRAIGVQQSRGW 52 (88)
Q Consensus 33 ~~LlsE~EWR~LGIqqS~GW 52 (88)
+-.++.+||+.||+..++-+
T Consensus 89 ~L~i~~~E~~~LGl~~~r~g 108 (116)
T PF09355_consen 89 GLYITDSELARLGLSRQRYG 108 (116)
T ss_pred CEEECHHHHHHhCcccCcce
Confidence 34789999999999886543
No 8
>PF07254 DUF1434: Protein of unknown function (DUF1434); InterPro: IPR009883 This family consists of several hypothetical bacterial proteins of around 135 residues in length. Members of this family all appear to be Enterobacterial proteins. The function of this family is unknown.
Probab=41.99 E-value=14 Score=26.32 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=9.9
Q ss_pred CcCHHHHHHhcc
Q 034636 35 LLSETEWRAIGV 46 (88)
Q Consensus 35 LlsE~EWR~LGI 46 (88)
=|+|+|||.|.-
T Consensus 116 sm~~~ewR~Lr~ 127 (132)
T PF07254_consen 116 SMSDEEWRHLRR 127 (132)
T ss_pred CCCHHHHHHHHH
Confidence 489999998853
No 9
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=32.75 E-value=30 Score=21.19 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=15.4
Q ss_pred CCcCHHHHHHhcccccCc
Q 034636 34 RLLSETEWRAIGVQQSRG 51 (88)
Q Consensus 34 ~LlsE~EWR~LGIqqS~G 51 (88)
-||+++.++.||++.+..
T Consensus 31 ~fis~~~a~rLgl~~~~~ 48 (72)
T PF13975_consen 31 NFISESLAKRLGLPLEKP 48 (72)
T ss_pred eecCHHHHHHhCCCcccC
Confidence 499999999999987753
No 10
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=29.70 E-value=47 Score=22.46 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=18.7
Q ss_pred eeCCCceeEEeeccCCchhhhHH
Q 034636 57 IHRPEPHIMLFRRPLNYQQQQEN 79 (88)
Q Consensus 57 ~h~pEphiLlFRRpl~~~~~~~~ 79 (88)
-|+.|-.|+-|.||+..+.-.+.
T Consensus 6 E~~gEKRIi~f~RPvkf~dl~~k 28 (79)
T cd06405 6 EHNGEKRIIQFPRPVKFKDLQQK 28 (79)
T ss_pred EecCceEEEecCCCccHHHHHHH
Confidence 37889999999999998775443
No 11
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=29.19 E-value=23 Score=20.45 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=7.7
Q ss_pred CcCHHHHHHhcccc
Q 034636 35 LLSETEWRAIGVQQ 48 (88)
Q Consensus 35 LlsE~EWR~LGIqq 48 (88)
-+|++||..|.-.|
T Consensus 9 ~fs~eEW~~L~~~Q 22 (41)
T PF01352_consen 9 YFSQEEWELLDPAQ 22 (41)
T ss_dssp ---HHHHHTS-HHH
T ss_pred EcChhhccccccee
Confidence 37899998886443
No 12
>PF15581 Imm35: Immunity protein 35
Probab=28.21 E-value=23 Score=24.59 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=9.6
Q ss_pred CcCHHHHHHhcc
Q 034636 35 LLSETEWRAIGV 46 (88)
Q Consensus 35 LlsE~EWR~LGI 46 (88)
+|=|+|||+|--
T Consensus 37 ~lIe~eWRGl~~ 48 (93)
T PF15581_consen 37 SLIEHEWRGLPE 48 (93)
T ss_pred HHHHHHHcCCCH
Confidence 577999998853
No 13
>cd00251 Mth_Ecto The ectodomain of Methuselah (Mth); Mth mutants have a 35% increase in average lifespan and increased resistance to several forms of stress, including heat, starvation, and oxidative damage; The protein affected by this mutation is related to G protein-coupled receptors of the secretin receptor family; Mth, like secretin receptor family members, has a large N-terminal ectodomain, which may constitute the ligand binding site.
Probab=25.34 E-value=45 Score=24.71 Aligned_cols=24 Identities=21% Similarity=0.600 Sum_probs=20.9
Q ss_pred ccccCCcCCCceeEEEEEcCHHHH
Q 034636 4 IQYSEKYFDDTYEYRHVVLPPDVA 27 (88)
Q Consensus 4 I~YS~kY~Dd~yeYRhViLpke~~ 27 (88)
|.-|.|+.|+.|.|-.|+.|+++.
T Consensus 9 It~~~r~~ngSy~y~gv~iP~~l~ 32 (176)
T cd00251 9 ITGSQRFPNGSYLYEGIIIPAHLT 32 (176)
T ss_pred ccCCeEcCCCCEEECCEEEChHHe
Confidence 556788899999999999999874
No 14
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=24.72 E-value=20 Score=24.24 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=11.9
Q ss_pred CceeEEeeccCCchhhh
Q 034636 61 EPHIMLFRRPLNYQQQQ 77 (88)
Q Consensus 61 EphiLlFRRpl~~~~~~ 77 (88)
-..|.|||||+-....+
T Consensus 49 p~rI~lyR~pl~~~~~~ 65 (97)
T PF06262_consen 49 PDRIVLYRRPLERRARS 65 (97)
T ss_dssp -EEEEEEHHHHHHT-SS
T ss_pred CCEEEEehHHHHHHhCC
Confidence 37999999998654433
No 15
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=21.43 E-value=69 Score=29.07 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=15.1
Q ss_pred CHHHHHHhcccccCceeeeeeeCCCceeEEe
Q 034636 37 SETEWRAIGVQQSRGWVHYAIHRPEPHIMLF 67 (88)
Q Consensus 37 sE~EWR~LGIqqS~GW~Hy~~h~pEphiLlF 67 (88)
.|+|||.+|-.- ..||++|
T Consensus 312 AEeE~r~~g~~S------------gLHIIIF 330 (744)
T KOG0741|consen 312 AEEEQRRLGANS------------GLHIIIF 330 (744)
T ss_pred HHHHHHhhCccC------------CceEEEe
Confidence 589999999653 4588888
No 16
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=21.30 E-value=37 Score=26.12 Aligned_cols=17 Identities=47% Similarity=0.808 Sum_probs=13.9
Q ss_pred CCCCCcCHHHHHHhccc
Q 034636 31 PKNRLLSETEWRAIGVQ 47 (88)
Q Consensus 31 pk~~LlsE~EWR~LGIq 47 (88)
|+.|+|||+|++.-|..
T Consensus 187 ~~rr~LteeEy~~q~~~ 203 (249)
T PF10225_consen 187 PKRRLLTEEEYEEQGER 203 (249)
T ss_pred CccccccccchhhcchH
Confidence 56789999999877754
No 17
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8. Members of this family are found in pre-mRNA-processing factor 8 (Prp8) which is a critical splicing factor, interacting with several other spliceosomal proteins, snRNAs, and the pre-mRNA, thus organizing and stabilizing the spliceosome catalytic core. Prp8 is one of the largest and most highly conserved of nuclear proteins, occupying a central position in the catalytic core of the spliceosome. Its C-terminal domain exhibits a JAB1/MPN-like core similar to deubiquitinating enzymes, but does not show catalytic isopeptidase activity, possibly because the putative isopeptidase center is covered by insertions and terminal appendices that are grafted onto this core, thus impairing the metal binding site. It is proposed that this domain is a protein interaction domain instead of a Zn(2+)-dependent metalloenzyme as proposed for some MPN proteins. The DEAD-box protein Brr2 and t
Probab=20.49 E-value=57 Score=25.72 Aligned_cols=46 Identities=28% Similarity=0.515 Sum_probs=28.0
Q ss_pred cCCcCCCceeEEEEEcCHHHHh----hCCCCCCcCHHHHHHhcccccCceeeee
Q 034636 7 SEKYFDDTYEYRHVVLPPDVAK----LLPKNRLLSETEWRAIGVQQSRGWVHYA 56 (88)
Q Consensus 7 S~kY~Dd~yeYRhViLpke~~k----~vpk~~LlsE~EWR~LGIqqS~GW~Hy~ 56 (88)
|+...+..+|-|+|++|++..- .+|+. +.+.|. -.|. .-.||.|--
T Consensus 66 ~~~d~~~vkeI~cIvipPQ~gt~~sv~l~~~--~~~~~~-l~~L-e~LGWIHTq 115 (252)
T cd08056 66 SPPDNPQVKEIRCIVLVPQLGTHQTVTLPQQ--LPQHEY-LEDL-EPLGWIHTQ 115 (252)
T ss_pred CCCCCCCeEEEEEEEECCEeCCcCcEECCcc--Cccchh-hCCC-EeeEEEEcC
Confidence 3455567899999999998763 22322 233333 2233 358999964
No 18
>PHA02969 hypothetical protein; Provisional
Probab=20.24 E-value=38 Score=24.07 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=17.1
Q ss_pred CCcCCCcee------EEEEEcCHHHHhh
Q 034636 8 EKYFDDTYE------YRHVVLPPDVAKL 29 (88)
Q Consensus 8 ~kY~Dd~ye------YRhViLpke~~k~ 29 (88)
..|+||.|+ |||+|+.|+....
T Consensus 11 ~nYSddDY~~iKsid~h~iIisK~~~~s 38 (111)
T PHA02969 11 NDYSDDDYKKIKSIDCHHIIIDKESDDS 38 (111)
T ss_pred ccCCchhHHhhhhcceeEEEEEeecCCc
Confidence 357777774 9999999987653
Done!