BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034639
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 7 LKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVLQTVSKTGKKTAF 66
V M+C GC AV RVL K+ GV+ +DIDL +KV ++ +L T+ KTGK ++
Sbjct: 5 FSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSY 63
Query: 67 W 67
Sbjct: 64 L 64
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 7 LKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVLQTVSKTGKKTAF 66
V M+C GC AV RVL K+ GV+ +DIDL +KV ++ +L T+ KTGK ++
Sbjct: 6 FSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSY 64
Query: 67 W 67
Sbjct: 65 L 65
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 9 VGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVLQTVSKTGK 62
+ M CE CV +K L + G+ + + D+++Q ++V+ +V P ++ T+ GK
Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGK 66
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 7 LKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVLQTVSKTGKK 63
LKV GM+C CV AV + L K+ GVE ++ L++ + V+G P A++Q V + G K
Sbjct: 4 LKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYK 61
>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
Metallochaperone, Atx1
Length = 73
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 7 LKVGMSCEGCVGAVKRVLGKMD-GVETFDIDLKEQKVTVKGNVQPGAVLQTVSKTGK 62
V M+C GC GAV +VL K++ V DI L++Q V V + +L+ + KTGK
Sbjct: 9 FNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGK 65
>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
Metallochaperone, Atx1
pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
Length = 73
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 7 LKVGMSCEGCVGAVKRVLGKMD-GVETFDIDLKEQKVTVKGNVQPGAVLQTVSKTGK 62
V M+C GC GAV +VL K++ V DI L++Q V V + +L+ + KTGK
Sbjct: 9 FNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGK 65
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 13 CEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVLQTVSKTGK 62
CE CV +K L + G+ + + D+++Q +V+ +V P ++ T+ GK
Sbjct: 16 CENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNCGK 65
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 1 MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDID--LKEQKVTVKGNVQPGAVLQTV 57
M+QT+ L++ GM C C +++R + K+ GV++ ++ L++ V+ G P + V
Sbjct: 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV 60
Query: 58 SKTGKKTAFWEEE 70
+ G +++
Sbjct: 61 ERAGYHARVLKQQ 73
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 1 MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDID--LKEQKVTVKGNVQPGAVLQTV 57
M+QT+ L++ GM C C +++R + K+ GV++ ++ L++ V+ G P + V
Sbjct: 1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV 60
Query: 58 SKTGKK 63
+ G
Sbjct: 61 ERAGYH 66
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A
Trinuclear Cu(I) Cluster
Length = 69
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 1 MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
M Q + GMSC+ CV AV+ +G++DGV ++L+ KV V
Sbjct: 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDV 44
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus
Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 1 MSQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
M Q + GMSC+ CV AV+ +G++DGV ++L+ KV V
Sbjct: 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDV 44
>pdb|1KVI|A Chain A, Solution Structure Of The Reduced Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
pdb|1KVJ|A Chain A, Solution Structure Of The Cu(I) Bound Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
Length = 79
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
GM+C CV +++ +GK++GV + L+E+ T+
Sbjct: 16 GMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATI 50
>pdb|3CJK|B Chain B, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 75
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
GM+C CV +++ +GK++GV + L+E+ T+
Sbjct: 10 GMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATI 44
>pdb|2K1R|A Chain A, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
Length = 73
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
GM+C CV +++ +GK++GV + L+E+ T+
Sbjct: 12 GMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATI 46
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 2 SQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN 47
S T++ GM+C CV +++ ++ +++GV+ + L E TV N
Sbjct: 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYN 167
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 4 TVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK 45
T+ L++ GM C+ CV ++ +G++ GV++ + L+ + VK
Sbjct: 21 TLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVK 63
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 2 SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDID--LKEQKVTVKGNVQPGAVLQTVS 58
+QT+ L++ GM C C +++R + K+ GV++ ++ L++ V+ G P + V
Sbjct: 1 AQTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE 60
Query: 59 KTGKK 63
+ G
Sbjct: 61 RAGYH 65
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 2 SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
+QTV L V GM+C C VK+ L K++GV D+ ++++ V
Sbjct: 2 TQTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVV 45
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 2 SQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
+QTV L V GM+C C VK+ + K++GV D+ + ++ V
Sbjct: 2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVV 45
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 4 TVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVLQTVSKTGKK 63
T+ V M+C+ CV AV++ L + GV+ ++ L++Q V V + V + TG++
Sbjct: 20 TLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQ 79
Query: 64 TAF 66
Sbjct: 80 AVL 82
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 5 VVLKV---GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
VVLK+ GM+C C ++ +GK+ GV+ + L Q+ T+
Sbjct: 9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATI 51
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I)
Form Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
Length = 76
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 5 VVLKV---GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
VVLK+ GM+C C ++ +GK+ GV+ + L Q+ T+
Sbjct: 3 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATI 45
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain
Of Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 2 SQTVVLKVGMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPGAVLQTVS 58
S+ + GM+C CV ++R L + +G+ + + L K V+ N +QP + + +
Sbjct: 3 SKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIR 62
Query: 59 KTG 61
+ G
Sbjct: 63 ELG 65
>pdb|2EW9|A Chain A, Solution Structure Of Apowln5-6
Length = 149
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPGAVLQTVSKTGKKTAF 66
GM+C CV ++R L K GV + + L K +K + +QP + Q + G + A
Sbjct: 12 GMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAV 71
Query: 67 WEE 69
E+
Sbjct: 72 MED 74
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPGAVLQTVSKTG 61
GM+C CV ++ L + +G+ + L K VK + + P +++ + + G
Sbjct: 88 GMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIG 142
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVL---QTVSKTGKK 63
GM+C C +++ L K++GV ++ + VTV+ N + +V + V K G K
Sbjct: 82 GMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYK 138
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVL---QTVSKTGKK 63
GM+C C +++ L K++GV ++ + VTV+ N + +V + V K G K
Sbjct: 82 GMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYK 138
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis In The Cu(I)loaded State
Length = 80
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVL---QTVSKTGKK 63
GM+C C +++ L K++GV ++ + VTV+ N + +V + V K G K
Sbjct: 11 GMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYK 67
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVL---QTVSKTGKK 63
GM+C C +++ L K++GV ++ + VTV+ N + +V + V K G K
Sbjct: 11 GMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYK 67
>pdb|2L3M|A Chain A, Solution Structure Of The Putative Copper-Ion-Binding
Protein From Bacillus Anthracis Str. Ames
Length = 71
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
GMSC CV A++ + +++GVE + L E V V
Sbjct: 13 GMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEV 47
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 1 MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVLQTVSK 59
M++ V +V G+SC C +R + +++GV ++ K+TV G A +Q V +
Sbjct: 1 MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGE----ASIQQVEQ 56
Query: 60 TG 61
G
Sbjct: 57 AG 58
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 11 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
++CE C AV + + D T +DL +KVT+
Sbjct: 9 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTI 42
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1 MSQTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK 45
++Q V+ + GM+C CV +++ V+ K GV++ + L TV+
Sbjct: 1 LTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVE 46
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 11 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
++CE C AV + + D T +DL +KVT+
Sbjct: 10 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTI 43
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 11 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
++CE C AV + + D T +DL +KVT+
Sbjct: 10 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTI 43
>pdb|1CPZ|A Chain A, Copper Chaperone Of Enterococcus Hirae (Apo-Form)
Length = 68
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK---GNVQPGAVLQTVSKTGKK 63
GMSC CV ++ +G++ GV+ + LK++K VK NVQ + Q +++ G +
Sbjct: 8 GMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQ 64
>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
pdb|2RGO|B Chain B, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 607
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 14 EGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVLQTVSKTGKK-TAFWEEEKP 72
EG + ++++L + G+ET +ID K+ +++ GN P + +TV++ K+ A EE+
Sbjct: 438 EGALRLIRQLLKEEYGIETKEIDSKKYQIS-GGNFDPTKLEETVTELAKEGVAAGLEEED 496
Query: 73 APAESDSKPTDA 84
A +D T+A
Sbjct: 497 ATYIADFYGTNA 508
>pdb|2RGH|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
Streptococcus Sp.: A Template For The Mitochondrial
Alpha- Glycerophosphate Dehydrogenase
Length = 571
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 14 EGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGNVQPGAVLQTVSKTGKK-TAFWEEEKP 72
EG + ++++L + G+ET +ID K+ +++ GN P + +TV++ K+ A EE+
Sbjct: 402 EGALRLIRQLLKEEYGIETKEIDSKKYQIS-GGNFDPTKLEETVTELAKEGVAAGLEEED 460
Query: 73 APAESDSKPTDA 84
A +D T+A
Sbjct: 461 ATYIADFYGTNA 472
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVK 45
GM+C CV +++ +G ++GVE ++L + ++
Sbjct: 10 GMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIR 45
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 11 MSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTV 44
M C C AV + + D T +DL +KVT+
Sbjct: 9 MDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTI 42
>pdb|1YJR|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
pdb|1YJT|A Chain A, Solution Structure Of The Cu(I) Form Of The Sixth
Soluble Domain A69p Mutant Of Menkes Protein
Length = 75
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPGAVLQTVSKTG 61
GM+C CV ++ L K G+ + L K +K + + P ++ T+ G
Sbjct: 12 GMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLG 66
>pdb|1YJU|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain Of Menkes Protein
pdb|1YJV|A Chain A, Solution Structure Of The Cu(i) Form Of The Sixth
Soluble Domain Of Menkes Protein
Length = 75
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 10 GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN---VQPGAVLQTVSKTGKKTAF 66
GM+C CV ++ L K G+ + L K +K + + P ++ T+ G + +
Sbjct: 12 GMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEASL 71
Query: 67 WEEE 70
+ E
Sbjct: 72 VKIE 75
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 7 LKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKE---QKVTVKGNVQPGAVLQTVSKTGK 62
LK+ GM+C+ C VK L K+ GV++ + + Q V G P A+ V+ G
Sbjct: 4 LKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGT-SPDALTAAVAGLGY 62
Query: 63 KTAFWE 68
K +
Sbjct: 63 KATLAD 68
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis
Hb8
Length = 211
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 37 LKEQKVTVKGNVQPGAVLQTVSKTGKKTAFWEEEKPAPAESDSKPTDAVAA 87
+ E++ +KG + PG +++ + G T +W P P + +P++A A
Sbjct: 23 IAEEERALKGLLPPG---ESLLEVGAGTGYWLRRLPYPQKVGVEPSEAXLA 70
>pdb|3FRY|A Chain A, Crystal Structure Of The Copa C-Terminal Metal Binding
Domain
pdb|3FRY|B Chain B, Crystal Structure Of The Copa C-Terminal Metal Binding
Domain
Length = 73
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 3 QTVVLKV-GMSCEGCVGAVKRVLGKMDGVETFDIDLKEQKVTVKGN 47
+ +VL++ G+SC CV VK+ L + G + +DL E V GN
Sbjct: 5 EKIVLELSGLSCHHCVARVKKALEEA-GAKVEKVDLNE--AVVAGN 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.126 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,460,744
Number of Sequences: 62578
Number of extensions: 81945
Number of successful extensions: 215
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 49
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)