Query 034641
Match_columns 88
No_of_seqs 86 out of 88
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 07:46:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034641.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034641hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmwa2 b.1.1.4 (A:113-178) CD 29.2 7.2 0.00052 23.2 0.6 23 57-79 3-25 (66)
2 d1akoa_ d.151.1.1 (A:) DNA-rep 19.1 7.9 0.00057 22.1 -0.7 28 52-83 2-29 (268)
3 d1hd7a_ d.151.1.1 (A:) DNA rep 15.4 12 0.00091 22.5 -0.5 28 52-83 20-48 (275)
4 d1tqza1 b.55.1.11 (A:1-133) Ne 12.8 9 0.00066 25.4 -1.8 14 18-31 108-121 (133)
5 d1dula_ a.36.1.1 (A:) Signal s 11.1 24 0.0017 20.6 -0.1 8 48-55 36-43 (69)
6 d1wa5b_ a.118.1.1 (B:) Karyoph 10.7 19 0.0014 24.0 -0.7 10 22-31 5-14 (503)
7 d1qb2a_ a.36.1.1 (A:) SRP54M { 10.7 25 0.0018 21.4 -0.1 7 49-55 77-83 (107)
8 d2a40b1 d.151.1.1 (B:1-260) De 10.5 25 0.0018 19.4 -0.2 24 52-76 2-25 (260)
9 d1xiwb_ b.1.1.4 (B:) CD3 delta 9.0 40 0.0029 20.1 0.4 22 58-79 5-26 (74)
10 d2ffha2 a.36.1.1 (A:319-418) S 8.6 34 0.0025 20.8 -0.1 8 48-55 65-72 (100)
No 1
>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}
Probab=29.18 E-value=7.2 Score=23.19 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.8
Q ss_pred eeeeeehhhhhhhhccceeeccc
Q 034641 57 NVFTVENKLKSSVRNSFKWIKGK 79 (88)
Q Consensus 57 k~Y~vEGKvK~S~R~sfrWiK~k 79 (88)
.|+..|+||=-+--.++.|+|+.
T Consensus 3 ~v~e~edkV~L~Cn~sI~w~k~~ 25 (66)
T d1xmwa2 3 EVLEAEDKVILKCNSSITLLQGT 25 (66)
T ss_dssp EEEEETTEEEEECSSSCEEEEEC
T ss_pred ceEecCceEEEEccCeEEEccCc
Confidence 68889999887778899999985
No 2
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=19.13 E-value=7.9 Score=22.14 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=13.7
Q ss_pred hheeeeeeeeehhhhhhhhccceeecccccee
Q 034641 52 RIASYNVFTVENKLKSSVRNSFKWIKGKFSDV 83 (88)
Q Consensus 52 RVA~Yk~Y~vEGKvK~S~R~sfrWiK~k~s~i 83 (88)
||++||| .| +++..+.-++||+..=.+|
T Consensus 2 ki~S~Nv---nG-~r~r~~~i~~~i~~~~~DI 29 (268)
T d1akoa_ 2 KFVSFNI---NG-LRARPHQLEAIVEKHQPDV 29 (268)
T ss_dssp EEEEEEC---SC-GGGCHHHHHHHHHHHCCSE
T ss_pred EEEEEEe---CC-HHHhHHHHHHHHHHCCCCE
Confidence 5677776 33 1223333455666543333
No 3
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.41 E-value=12 Score=22.51 Aligned_cols=28 Identities=29% Similarity=0.765 Sum_probs=15.9
Q ss_pred hheeeeeeeeehhhhhhhhcc-ceeecccccee
Q 034641 52 RIASYNVFTVENKLKSSVRNS-FKWIKGKFSDV 83 (88)
Q Consensus 52 RVA~Yk~Y~vEGKvK~S~R~s-frWiK~k~s~i 83 (88)
||++||| .| +++.+++. +.||+..=-+|
T Consensus 20 ki~S~Nv---nG-lr~~~~~~~~~~i~~~~pDI 48 (275)
T d1hd7a_ 20 KICSWNV---DG-LRAWIKKKGLDWVKEEAPDI 48 (275)
T ss_dssp EEEEEEC---SS-HHHHHHTTHHHHHHHHCCSE
T ss_pred EEEEEEe---cc-HHhhhhccHHHHHHhCCCCE
Confidence 7999998 33 23333333 47877653333
No 4
>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.78 E-value=9 Score=25.43 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=12.4
Q ss_pred ccccccCcceeecC
Q 034641 18 FDFDNQSNAYIFNG 31 (88)
Q Consensus 18 ~g~~~~s~sy~fng 31 (88)
.||.||+.++.||-
T Consensus 108 iGF~dR~dAFDFnv 121 (133)
T d1tqza1 108 IGFTDRGDAFDFNV 121 (133)
T ss_dssp EECSCHHHHHHHHH
T ss_pred eeecccCcccchhh
Confidence 59999999999973
No 5
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=11.15 E-value=24 Score=20.63 Aligned_cols=8 Identities=63% Similarity=0.954 Sum_probs=6.5
Q ss_pred Hhhhhhee
Q 034641 48 KRKKRIAS 55 (88)
Q Consensus 48 kRkkRVA~ 55 (88)
-|++|||.
T Consensus 36 SR~~RIA~ 43 (69)
T d1dula_ 36 SRKRRIAA 43 (69)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHc
Confidence 59999984
No 6
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.69 E-value=19 Score=23.98 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=2.2
Q ss_pred ccCcceeecC
Q 034641 22 NQSNAYIFNG 31 (88)
Q Consensus 22 ~~s~sy~fng 31 (88)
.|++.|-..|
T Consensus 5 ~~~~~~~~~~ 14 (503)
T d1wa5b_ 5 YRRTNFKNKG 14 (503)
T ss_dssp GGCC------
T ss_pred HHhHHhccCC
Confidence 3566665554
No 7
>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.66 E-value=25 Score=21.41 Aligned_cols=7 Identities=43% Similarity=0.672 Sum_probs=6.1
Q ss_pred hhhhhee
Q 034641 49 RKKRIAS 55 (88)
Q Consensus 49 RkkRVA~ 55 (88)
|++|||.
T Consensus 77 R~~RIA~ 83 (107)
T d1qb2a_ 77 RIQRVAR 83 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999984
No 8
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.51 E-value=25 Score=19.42 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=10.3
Q ss_pred hheeeeeeeeehhhhhhhhccceee
Q 034641 52 RIASYNVFTVENKLKSSVRNSFKWI 76 (88)
Q Consensus 52 RVA~Yk~Y~vEGKvK~S~R~sfrWi 76 (88)
|||+|||-.. |..|..-+.-+.||
T Consensus 2 rI~s~Ni~~~-~~~~~~~~~~~~~l 25 (260)
T d2a40b1 2 KIAAFNIRTF-GETKMSNATLASYI 25 (260)
T ss_dssp EEEEEEEEEE-SHHHHHSHHHHHHH
T ss_pred EEEEEeCCcc-CCCccccHHHHHHH
Confidence 5666665321 33333333333444
No 9
>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.96 E-value=40 Score=20.11 Aligned_cols=22 Identities=18% Similarity=0.563 Sum_probs=17.8
Q ss_pred eeeeehhhhhhhhccceeeccc
Q 034641 58 VFTVENKLKSSVRNSFKWIKGK 79 (88)
Q Consensus 58 ~Y~vEGKvK~S~R~sfrWiK~k 79 (88)
|...||+|=-+--.++.|+|+.
T Consensus 5 v~e~e~~V~L~Cn~si~W~k~~ 26 (74)
T d1xiwb_ 5 IEELEDRVFVNCNTSITWVEGT 26 (74)
T ss_dssp EEEETTEEEEECSSCEEEEEEC
T ss_pred eeecCCeEEEEccCeeEEecCC
Confidence 5567888877777899999986
No 10
>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=8.57 E-value=34 Score=20.80 Aligned_cols=8 Identities=63% Similarity=0.912 Sum_probs=6.4
Q ss_pred Hhhhhhee
Q 034641 48 KRKKRIAS 55 (88)
Q Consensus 48 kRkkRVA~ 55 (88)
.|++|||.
T Consensus 65 sR~~RIA~ 72 (100)
T d2ffha2 65 SRRKRIAK 72 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 58899984
Done!