BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034642
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJJ5|CKS2_ARATH Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis
thaliana GN=CKS2 PE=3 SV=1
Length = 83
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/82 (90%), Positives = 80/82 (97%), Gaps = 2/82 (2%)
Query: 1 MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRP 60
MGQIQYS+KYFDDT+EYRHVVLPP+VAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1 MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60
Query: 61 EPHIMLFRRPLNYQQQQENQAQ 82
EPHIMLFRRPLNY QQE+QAQ
Sbjct: 61 EPHIMLFRRPLNY--QQEHQAQ 80
>sp|Q6PS57|CKS1_ORYSJ Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa
subsp. japonica GN=CKS1 PE=2 SV=1
Length = 90
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 1 MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRP 60
MGQIQYSEKYFDDTYEYRHVVLPP+VAKLLPKNRLLSE EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
Query: 61 EPHIMLFRRPLNY 73
EPHIMLFRRPLN+
Sbjct: 61 EPHIMLFRRPLNF 73
>sp|A2XCH8|CKS1_ORYSI Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa
subsp. indica GN=CKS1 PE=2 SV=1
Length = 90
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 1 MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRP 60
MGQIQYSEKYFDDTYEYRHVVLPP+VAKLLPKNRLLSE EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
Query: 61 EPHIMLFRRPLNY 73
EPHIMLFRRPLN+
Sbjct: 61 EPHIMLFRRPLNF 73
>sp|O23249|CKS1_ARATH Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis
thaliana GN=CKS1 PE=1 SV=1
Length = 87
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/71 (94%), Positives = 70/71 (98%)
Query: 1 MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRP 60
MGQIQYSEKYFDDT+EYRHVVLPP+VAKLLPKNRLLSE EWRAIGVQQSRGWVHYA+HRP
Sbjct: 1 MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60
Query: 61 EPHIMLFRRPL 71
EPHIMLFRRPL
Sbjct: 61 EPHIMLFRRPL 71
>sp|P55933|CKS1_PHYPO Probable cyclin-dependent kinases regulatory subunit OS=Physarum
polycephalum PE=1 SV=1
Length = 84
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/66 (81%), Positives = 62/66 (93%)
Query: 4 IQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPH 63
IQYSEKY+DD +EYRHV+LPPDVAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6 IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65
Query: 64 IMLFRR 69
I+LFRR
Sbjct: 66 ILLFRR 71
>sp|P41384|CKS1_PATVU Cyclin-dependent kinases regulatory subunit OS=Patella vulgata
PE=3 SV=1
Length = 76
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 3 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEP 62
QI YS+KYFD+ +EYRHV+LP D+AK++PKN L+SE EWR+IGVQQS GW+HY H PEP
Sbjct: 5 QIYYSDKYFDEDFEYRHVMLPKDIAKMVPKNHLMSEAEWRSIGVQQSHGWIHYMKHEPEP 64
Query: 63 HIMLFRRPLNYQ 74
HI+LFRR + Q
Sbjct: 65 HILLFRRKVTGQ 76
>sp|Q25330|CKS1_LEIME Cyclin-dependent kinases regulatory subunit OS=Leishmania
mexicana PE=3 SV=1
Length = 99
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 61/68 (89%)
Query: 3 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEP 62
+I YS+KY+DD +EYRHV+LP D+A+L+P +RL+SE EWR +GVQQS+GWVHY IH+PEP
Sbjct: 30 KILYSDKYYDDMFEYRHVILPKDLARLVPTSRLMSEMEWRQLGVQQSQGWVHYMIHKPEP 89
Query: 63 HIMLFRRP 70
H++LF+RP
Sbjct: 90 HVLLFKRP 97
>sp|P61025|CKS1_MOUSE Cyclin-dependent kinases regulatory subunit 1 OS=Mus musculus
GN=Cks1b PE=2 SV=1
Length = 79
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 60/69 (86%)
Query: 3 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEP 62
QI YS+KY D+ +EYRHV+LP D+AKL+PK L+SE+EWR +GVQQS+GWVHY IH PEP
Sbjct: 5 QIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEPEP 64
Query: 63 HIMLFRRPL 71
HI+LFRRPL
Sbjct: 65 HILLFRRPL 73
>sp|P61024|CKS1_HUMAN Cyclin-dependent kinases regulatory subunit 1 OS=Homo sapiens
GN=CKS1B PE=1 SV=1
Length = 79
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 60/69 (86%)
Query: 3 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEP 62
QI YS+KY D+ +EYRHV+LP D+AKL+PK L+SE+EWR +GVQQS+GWVHY IH PEP
Sbjct: 5 QIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEPEP 64
Query: 63 HIMLFRRPL 71
HI+LFRRPL
Sbjct: 65 HILLFRRPL 73
>sp|Q0P5A5|CKS1_BOVIN Cyclin-dependent kinases regulatory subunit 1 OS=Bos taurus
GN=CKS1B PE=3 SV=1
Length = 79
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 60/69 (86%)
Query: 3 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEP 62
QI YS+KY D+ +EYRHV+LP D+AKL+PK L+SE+EWR +GVQQS+GWVHY IH PEP
Sbjct: 5 QIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEPEP 64
Query: 63 HIMLFRRPL 71
HI+LFRRPL
Sbjct: 65 HILLFRRPL 73
>sp|Q24152|CKS1_DROME Cyclin-dependent kinases regulatory subunit OS=Drosophila
melanogaster GN=Cks30A PE=3 SV=1
Length = 74
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 59/67 (88%)
Query: 4 IQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPH 63
I YS+KY+D+ +EYRHVVLP ++ K++PK L++E EWR+IGVQQSRGW+HY IH+PEPH
Sbjct: 5 IYYSDKYYDEQFEYRHVVLPKELVKMVPKTHLMTEAEWRSIGVQQSRGWIHYMIHKPEPH 64
Query: 64 IMLFRRP 70
I+LFRRP
Sbjct: 65 ILLFRRP 71
>sp|P56390|CKS2_MOUSE Cyclin-dependent kinases regulatory subunit 2 OS=Mus musculus
GN=Cks2 PE=2 SV=1
Length = 79
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 62/75 (82%)
Query: 3 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEP 62
QI YS+KYFD+ YEYRHV+LP +++K +PK L+SE EWR +GVQQS GWVHY IH PEP
Sbjct: 5 QIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEP 64
Query: 63 HIMLFRRPLNYQQQQ 77
HI+LFRRPL +QQ+
Sbjct: 65 HILLFRRPLPKEQQK 79
>sp|P33552|CKS2_HUMAN Cyclin-dependent kinases regulatory subunit 2 OS=Homo sapiens
GN=CKS2 PE=1 SV=1
Length = 79
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 61/75 (81%)
Query: 3 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEP 62
QI YS+KYFD+ YEYRHV+LP +++K +PK L+SE EWR +GVQQS GWVHY IH PEP
Sbjct: 5 QIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEP 64
Query: 63 HIMLFRRPLNYQQQQ 77
HI+LFRRPL QQ+
Sbjct: 65 HILLFRRPLPKDQQK 79
>sp|Q2KJI1|CKS2_BOVIN Cyclin-dependent kinases regulatory subunit 2 OS=Bos taurus
GN=CKS2 PE=3 SV=1
Length = 79
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 61/75 (81%)
Query: 3 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEP 62
QI YS+KYFD+ YEYRHV+LP +++K +PK L+SE EWR +GVQQS GWVHY IH PEP
Sbjct: 5 QIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEP 64
Query: 63 HIMLFRRPLNYQQQQ 77
HI+LFRRPL QQ+
Sbjct: 65 HILLFRRPLPKDQQK 79
>sp|A8XMF2|CKS1_CAEBR Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis
briggsae GN=cks-1 PE=3 SV=1
Length = 94
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 58/71 (81%)
Query: 6 YSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIM 65
YS KY DD YEYRHV + DVAKL+PKNRL+SETEWR++G+QQS GW+HY IH PE H++
Sbjct: 10 YSNKYEDDEYEYRHVHVTKDVAKLIPKNRLMSETEWRSLGIQQSPGWIHYMIHGPERHVL 69
Query: 66 LFRRPLNYQQQ 76
LFRRPL Q+
Sbjct: 70 LFRRPLPNAQK 80
>sp|Q17868|CKS1_CAEEL Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis
elegans GN=cks-1 PE=1 SV=1
Length = 94
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 59/79 (74%)
Query: 6 YSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIM 65
YS KY DD +EYRHV + DV+KL+PKNRL+SETEWR++G+QQS GW+HY IH PE H++
Sbjct: 10 YSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVL 69
Query: 66 LFRRPLNYQQQQENQAQQN 84
LFRRPL Q+ +
Sbjct: 70 LFRRPLAATQKTGGNVRSG 88
>sp|Q91879|CKS2_XENLA Cyclin-dependent kinases regulatory subunit 2 OS=Xenopus laevis
GN=cks2 PE=3 SV=1
Length = 79
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 59/74 (79%)
Query: 4 IQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPH 63
I YS+KY D+ +EYRHV+LP ++AK +PK L+SE EWR +GVQQS GWVHY IH PEPH
Sbjct: 6 IYYSDKYTDEHFEYRHVMLPKELAKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPH 65
Query: 64 IMLFRRPLNYQQQQ 77
I+LFRRPL QQ+
Sbjct: 66 ILLFRRPLPKDQQK 79
>sp|B0G102|CKS1_DICDI Cyclin-dependent kinases regulatory subunit OS=Dictyostelium
discoideum GN=cks1 PE=3 SV=1
Length = 82
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 54/66 (81%)
Query: 5 QYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHI 64
YS KY+DD YEYRHV+LP +++ L+P++ LL+E E R +G++QS GW HYA H+PEPHI
Sbjct: 6 HYSSKYYDDKYEYRHVILPSEISSLIPRDVLLTEDECRKLGIRQSDGWEHYANHKPEPHI 65
Query: 65 MLFRRP 70
+LFRRP
Sbjct: 66 LLFRRP 71
>sp|P20486|CKS1_YEAST Cyclin-dependent kinases regulatory subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CKS1 PE=1
SV=1
Length = 150
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 9/83 (10%)
Query: 3 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKN---------RLLSETEWRAIGVQQSRGWV 53
I YS +Y DD YEYRHV+LP + K++P + R+L+E EWR +G+ QS GW
Sbjct: 27 SIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWE 86
Query: 54 HYAIHRPEPHIMLFRRPLNYQQQ 76
HY H PEPHI+LF+RPLNY+ +
Sbjct: 87 HYECHAPEPHILLFKRPLNYEAE 109
>sp|P08463|CKS1_SCHPO Cyclin-dependent kinases regulatory subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=suc1 PE=1 SV=3
Length = 113
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 9/89 (10%)
Query: 1 MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKN---------RLLSETEWRAIGVQQSRG 51
+ QI YS +Y DD YEYRHV+LP + K +P + R+L E EWR +G+ QS G
Sbjct: 22 IDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLG 81
Query: 52 WVHYAIHRPEPHIMLFRRPLNYQQQQENQ 80
W Y +H PEPHI+LF+R +YQ + Q
Sbjct: 82 WEMYEVHVPEPHILLFKREKDYQMKFSQQ 110
>sp|P55131|RTX32_ACTPL RTX-III toxin determinant A from serotype 8 OS=Actinobacillus
pleuropneumoniae GN=apxIIIA PE=3 SV=1
Length = 1052
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 5 QYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHY 55
+Y + YF++ Y+ RH D LL ETE RA+ + Q R W Y
Sbjct: 442 KYGKNYFENGYDARHKAFLEDSFSLLSSFNKQYETE-RAVLITQQR-WDEY 490
>sp|P55130|RTX31_ACTPL RTX-III toxin determinant A from serotype 2 OS=Actinobacillus
pleuropneumoniae GN=apxIIIA PE=3 SV=1
Length = 1049
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 5 QYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHY 55
+Y + YF++ Y+ RH D LL ETE RA+ + Q R W Y
Sbjct: 442 KYGKNYFENGYDARHKAFLEDSFSLLSSFNKQYETE-RAVLITQQR-WDEY 490
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,752,283
Number of Sequences: 539616
Number of extensions: 1164793
Number of successful extensions: 3061
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3035
Number of HSP's gapped (non-prelim): 28
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)