Query 034642
Match_columns 88
No_of_seqs 103 out of 202
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 07:47:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cks_A Cyclin-dependent kinase 100.0 9.7E-53 3.3E-57 278.4 5.3 75 2-76 4-78 (79)
2 3qy2_A Cyclin-dependent kinase 100.0 2.8E-50 9.6E-55 282.2 6.3 80 2-81 26-114 (117)
3 1puc_A P13SUC1, P13; cell cycl 100.0 7.3E-50 2.5E-54 275.9 4.4 74 2-75 22-104 (105)
4 1qb3_A Cyclin-dependent kinase 100.0 4.1E-48 1.4E-52 280.2 7.6 81 2-82 26-115 (150)
5 2jrh_A Mitogen-activated prote 36.9 21 0.00071 23.9 2.2 24 57-80 10-33 (94)
6 2c60_A Human mitogen-activated 34.0 24 0.00082 24.2 2.2 24 57-80 37-60 (111)
7 2npt_B Mitogen-activated prote 31.5 28 0.00097 23.4 2.2 24 57-80 26-49 (100)
8 1fjr_A Methuselah ectodomain; 19.6 27 0.00092 25.2 0.4 24 4-27 13-36 (195)
9 2cu1_A Mitogen-activated prote 19.1 73 0.0025 21.5 2.4 23 57-79 14-36 (103)
10 3e11_A Predicted zincin-like m 18.4 21 0.00071 23.6 -0.4 13 62-74 67-79 (114)
No 1
>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C*
Probab=100.00 E-value=9.7e-53 Score=278.36 Aligned_cols=75 Identities=67% Similarity=1.222 Sum_probs=71.0
Q ss_pred CCccccCCcCCCceeEEEEEcCHHHHhhCCCCCCcCHHHHHHhcccccCceeeeeeeCCCceeEEeeccCCchhh
Q 034642 2 GQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQ 76 (88)
Q Consensus 2 ~~I~YS~kY~Dd~yeYRhViLpke~~k~vpk~~LlsE~EWR~LGIqqS~GW~Hy~~h~pEphiLlFRRpl~~~~~ 76 (88)
++|+||+||+||+|||||||||++++|++|+++||||+|||+||||||+||+|||+|+|||||||||||++.+++
T Consensus 4 ~~I~YS~kY~Dd~yeYRhViLpke~~k~vpk~~LlsE~EWR~LGIqqS~GW~Hy~ih~pEphiLlFRRp~~~~~~ 78 (79)
T 1cks_A 4 KQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPLPKDQQ 78 (79)
T ss_dssp CCCEECCCEECSSCEECCEECCHHHHHTSCSSSCCCHHHHHHHTCCCCTTCCCCBCCCCCCCCCCCCCCCCC---
T ss_pred CCcEECCCccCCCeEEEEEEcCHHHHHhCCcccccCHHHHHHhCcccCCCeEEEEecCCCCeEEEEeccCCCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999988653
No 2
>3qy2_A Cyclin-dependent kinases regulatory subunit; protein kinase activator, ubiquitin binding, transcription, cell cycle, transferase RE; HET: FLC; 2.59A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-50 Score=282.23 Aligned_cols=80 Identities=51% Similarity=1.066 Sum_probs=69.7
Q ss_pred CCccccCCcCCCceeEEEEEcCHHHHhhCCCC---------CCcCHHHHHHhcccccCceeeeeeeCCCceeEEeeccCC
Q 034642 2 GQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKN---------RLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLN 72 (88)
Q Consensus 2 ~~I~YS~kY~Dd~yeYRhViLpke~~k~vpk~---------~LlsE~EWR~LGIqqS~GW~Hy~~h~pEphiLlFRRpl~ 72 (88)
++|+||+||+||+|||||||||++++|.+|++ +||||+|||+||||||+||+|||+|+|||||||||||++
T Consensus 26 ~~I~YS~KY~Dd~yEYRHViLPke~~k~iPk~~~~~~~g~~rLLsE~EWR~LGIqqS~GW~HY~ih~pEPhILLFRRp~~ 105 (117)
T 3qy2_A 26 DSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAAEPHILLFKRPLN 105 (117)
T ss_dssp GGCEECCCEECSSEEEEEEECCGGGGGGSCGGGBCTTTSSBCCCCHHHHHHTTCCCCSSCEEECCTTSCTTEEEEEEECC
T ss_pred ccceecCCccCCCeEEEEEEcCHHHHHhCchhhcccccccceecCHHHHHHhccccCCCcEEeeecCCCCeEEEEecCCC
Confidence 68999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred chhhhHHHH
Q 034642 73 YQQQQENQA 81 (88)
Q Consensus 73 ~~~~~~~~~ 81 (88)
++++.+.++
T Consensus 106 ~~~~~~~~~ 114 (117)
T 3qy2_A 106 YEAELRAAT 114 (117)
T ss_dssp ---------
T ss_pred CCcchhhhh
Confidence 987665443
No 3
>1puc_A P13SUC1, P13; cell cycle, domain swapping, strand-exchanged dimer, binding protein; HET: CPS; 1.95A {Schizosaccharomyces pombe} SCOP: d.97.1.1 PDB: 1sce_A
Probab=100.00 E-value=7.3e-50 Score=275.92 Aligned_cols=74 Identities=54% Similarity=1.083 Sum_probs=69.9
Q ss_pred CCccccCCcCCCceeEEEEEcCHHHHhhCCCC---------CCcCHHHHHHhcccccCceeeeeeeCCCceeEEeeccCC
Q 034642 2 GQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKN---------RLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLN 72 (88)
Q Consensus 2 ~~I~YS~kY~Dd~yeYRhViLpke~~k~vpk~---------~LlsE~EWR~LGIqqS~GW~Hy~~h~pEphiLlFRRpl~ 72 (88)
++|+||+||+||+|||||||||++++|.+|++ +||||+|||+||||||+||+|||+|+|||||||||||++
T Consensus 22 ~~I~YS~kY~Dd~yEYRHViLPke~~k~ipk~~~~~~~gt~rLLtE~EWR~LGIqqS~GW~Hy~ih~pEPhiLLFRRp~~ 101 (105)
T 1puc_A 22 DQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGWEMYEVHVPEPHILLFKREKD 101 (105)
T ss_dssp TTCEECCCEECSSCEECCEECCHHHHTTSCGGGBCTTTSSBCCCCHHHHHHTTCCCCSSCCCCCCCCCCTTCCCCCCCCC
T ss_pred cCceeCCcccCCCeEEEEEEcCHHHHHhCcccccccccccccccCHHHHHHhCcccCCCcEEEeecCCCCeEEEEeccCC
Confidence 68999999999999999999999999999998 999999999999999999999999999999999999998
Q ss_pred chh
Q 034642 73 YQQ 75 (88)
Q Consensus 73 ~~~ 75 (88)
.++
T Consensus 102 ~~~ 104 (105)
T 1puc_A 102 YQM 104 (105)
T ss_dssp ---
T ss_pred CCC
Confidence 864
No 4
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=100.00 E-value=4.1e-48 Score=280.21 Aligned_cols=81 Identities=52% Similarity=1.082 Sum_probs=76.0
Q ss_pred CCccccCCcCCCceeEEEEEcCHHHHhhCCCC---------CCcCHHHHHHhcccccCceeeeeeeCCCceeEEeeccCC
Q 034642 2 GQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKN---------RLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLN 72 (88)
Q Consensus 2 ~~I~YS~kY~Dd~yeYRhViLpke~~k~vpk~---------~LlsE~EWR~LGIqqS~GW~Hy~~h~pEphiLlFRRpl~ 72 (88)
++|+||+||+||+|||||||||++++|.+|++ +||||+|||+||||||+||+|||+|+|||||||||||++
T Consensus 26 ~~I~YS~KY~Dd~YEYRHViLPke~~k~iPk~y~~~~~gt~rLLtE~EWR~LGIqQS~GW~HYmih~PEPhILLFRRpl~ 105 (150)
T 1qb3_A 26 DSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAPEPHILLFKRPLN 105 (150)
T ss_dssp GGCEECCCEECSSEEEEEEECCHHHHHTSCGGGBCTTTSSBCCCCHHHHHHTTCCCCTTCEEESCCCCCTTEEEEEEETT
T ss_pred hcceeccceecCceeEEEEecCHHHHhhccccccccccccccCCCHHHHHHHccccCcCcEEeeecCCCCcEEEecCCCC
Confidence 57999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred chhhhHHHHH
Q 034642 73 YQQQQENQAQ 82 (88)
Q Consensus 73 ~~~~~~~~~~ 82 (88)
.++.....++
T Consensus 106 ~~~~~~~a~~ 115 (150)
T 1qb3_A 106 YEAELRAATA 115 (150)
T ss_dssp HHHHHHHHHH
T ss_pred CCCCcchhhH
Confidence 9876654443
No 5
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=36.90 E-value=21 Score=23.88 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=19.3
Q ss_pred eeCCCceeEEeeccCCchhhhHHH
Q 034642 57 IHRPEPHIMLFRRPLNYQQQQENQ 80 (88)
Q Consensus 57 ~h~pEphiLlFRRpl~~~~~~~~~ 80 (88)
-|..|-.|+-|+||+.++.-.+.+
T Consensus 10 E~~gEKRIi~f~RPvkf~dl~qkv 33 (94)
T 2jrh_A 10 EHNGERRIIAFSRPVKYEDVEHKV 33 (94)
T ss_dssp EETTEEEEEEECSSCCHHHHHHHH
T ss_pred EecCceEEEecCCCccHHHHHHHH
Confidence 378899999999999988755443
No 6
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=34.03 E-value=24 Score=24.18 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=19.3
Q ss_pred eeCCCceeEEeeccCCchhhhHHH
Q 034642 57 IHRPEPHIMLFRRPLNYQQQQENQ 80 (88)
Q Consensus 57 ~h~pEphiLlFRRpl~~~~~~~~~ 80 (88)
-|..|-.|+-|+||+.++.-.+.+
T Consensus 37 E~~gEKRIiqf~RPvkf~dl~qkv 60 (111)
T 2c60_A 37 EHNGERRIIAFSRPVKYEDVEHKV 60 (111)
T ss_dssp EETTEEEEEEECSSCCHHHHHHHH
T ss_pred EecCceEEEecCCCccHHHHHHHH
Confidence 378899999999999987755443
No 7
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=31.52 E-value=28 Score=23.44 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=19.5
Q ss_pred eeCCCceeEEeeccCCchhhhHHH
Q 034642 57 IHRPEPHIMLFRRPLNYQQQQENQ 80 (88)
Q Consensus 57 ~h~pEphiLlFRRpl~~~~~~~~~ 80 (88)
-|..|-.|+-|.||+.++.-.+.+
T Consensus 26 E~~gEkRIi~f~RPv~f~el~~kv 49 (100)
T 2npt_B 26 EHRGEKRILQFPRPVKLEDLRSKA 49 (100)
T ss_dssp EETTEEEEEEECSSCCHHHHHHHH
T ss_pred EecCceEEEecCCCccHHHHHHHH
Confidence 478899999999999988755443
No 8
>1fjr_A Methuselah ectodomain; GPCR, G protein-coupled receptor, signaling PROT; HET: NAG; 2.30A {Drosophila melanogaster} SCOP: b.102.1.1 PDB: 2pzx_A
Probab=19.58 E-value=27 Score=25.22 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=20.7
Q ss_pred ccccCCcCCCceeEEEEEcCHHHH
Q 034642 4 IQYSEKYFDDTYEYRHVVLPPDVA 27 (88)
Q Consensus 4 I~YS~kY~Dd~yeYRhViLpke~~ 27 (88)
|.-|.++.|+.|.|..|++|.++.
T Consensus 13 It~~~r~~ngSy~y~gi~iP~~l~ 36 (195)
T 1fjr_A 13 ISAAQKLQNGSYLFEGLLVPAILT 36 (195)
T ss_dssp CTTSEECTTSCEEETTEEECGGGE
T ss_pred ccCCeEcCCCCEEECCEEEChHHe
Confidence 456778889999999999999875
No 9
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=19.10 E-value=73 Score=21.46 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=18.5
Q ss_pred eeCCCceeEEeeccCCchhhhHH
Q 034642 57 IHRPEPHIMLFRRPLNYQQQQEN 79 (88)
Q Consensus 57 ~h~pEphiLlFRRpl~~~~~~~~ 79 (88)
-|.-|-.||-|.||+.++.-.+.
T Consensus 14 E~~GEkRIi~f~RPv~f~eL~~K 36 (103)
T 2cu1_A 14 EHRGEKRILQFPRPVKLEDLRSK 36 (103)
T ss_dssp EETTEEEEEEEESSCCHHHHHHH
T ss_pred EecCeEEEEeccCCccHHHHHHH
Confidence 37889999999999998764443
No 10
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=18.42 E-value=21 Score=23.60 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=10.9
Q ss_pred ceeEEeeccCCch
Q 034642 62 PHIMLFRRPLNYQ 74 (88)
Q Consensus 62 phiLlFRRpl~~~ 74 (88)
..|.|||||+-..
T Consensus 67 ~rI~lYR~Pi~~~ 79 (114)
T 3e11_A 67 DRIIIYRNTICAL 79 (114)
T ss_dssp EEEEEEHHHHHHT
T ss_pred CEEEEehHHHHHH
Confidence 7999999998543
Done!