BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034644
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
 pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
          Length = 290

 Score = 30.8 bits (68), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 10/75 (13%)

Query: 20  LEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCED--------CKCVPSGTYGNKHE 71
           L+P + G+   D K      +    +  +KY GIC ED         + +PSG+   K  
Sbjct: 46  LKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSL--KEY 103

Query: 72  CPCYRDKVNKKGKPK 86
            P  ++K+N K + K
Sbjct: 104 LPKNKNKINLKQQLK 118


>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
 pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
 pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
 pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
 pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
 pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
 pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
 pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
 pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
 pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
 pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
 pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
 pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
 pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
 pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
 pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
          Length = 302

 Score = 30.4 bits (67), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 10/75 (13%)

Query: 20  LEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCED--------CKCVPSGTYGNKHE 71
           L+P + G+   D K      +    +  +KY GIC ED         + +PSG+   K  
Sbjct: 58  LKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSL--KEY 115

Query: 72  CPCYRDKVNKKGKPK 86
            P  ++K+N K + K
Sbjct: 116 LPKNKNKINLKQQLK 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.489 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,772,356
Number of Sequences: 62578
Number of extensions: 103802
Number of successful extensions: 315
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 31
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)