Query 034644
Match_columns 88
No_of_seqs 101 out of 203
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 05:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02704 GASA: Gibberellin reg 100.0 2.2E-38 4.7E-43 201.9 5.1 60 29-88 1-60 (60)
2 PF11912 DUF3430: Protein of u 82.2 1.2 2.7E-05 31.6 2.4 16 1-16 1-16 (212)
3 PF07172 GRP: Glycine rich pro 81.1 1.4 3.1E-05 29.8 2.2 9 8-16 11-19 (95)
4 PF08027 Albumin_I: Albumin I; 64.9 0.86 1.9E-05 32.8 -2.0 32 25-67 17-48 (120)
5 PF09257 BCMA-Tall_bind: BCMA, 60.5 6.6 0.00014 23.4 1.6 21 33-53 16-36 (39)
6 PF07127 Nodulin_late: Late no 55.5 12 0.00026 22.4 2.1 7 27-33 33-39 (54)
7 PF10690 Myticin-prepro: Mytic 48.6 8.5 0.00018 26.9 0.8 21 22-42 17-38 (98)
8 PF02950 Conotoxin: Conotoxin; 47.2 6.3 0.00014 24.1 0.0 6 1-6 1-6 (75)
9 KOG4063 Major epididymal secre 45.3 25 0.00054 26.4 2.9 32 1-32 1-32 (158)
10 PF04202 Mfp-3: Foot protein 3 42.6 22 0.00049 23.6 2.0 20 7-26 6-25 (71)
11 PF15330 SIT: SHP2-interacting 41.4 31 0.00067 23.8 2.7 16 67-82 41-56 (107)
12 PRK00888 ftsB cell division pr 36.3 42 0.00091 22.7 2.7 15 1-15 1-15 (105)
13 PF06607 Prokineticin: Prokine 32.2 14 0.0003 25.4 -0.2 11 69-79 75-85 (97)
14 PF07403 DUF1505: Protein of u 31.9 33 0.00072 24.4 1.7 16 1-16 1-16 (114)
15 PF15284 PAGK: Phage-encoded v 30.9 62 0.0013 20.9 2.6 25 1-25 1-26 (61)
16 PRK11505 hypothetical protein; 29.3 54 0.0012 23.2 2.4 18 1-18 1-18 (106)
17 PLN03207 stomagen; Provisional 28.3 79 0.0017 22.6 3.1 16 6-21 15-30 (113)
18 PF07699 GCC2_GCC3: GCC2 and G 27.8 81 0.0018 17.9 2.6 27 57-83 10-40 (48)
19 PLN02995 Probable pectinestera 27.8 1.1E+02 0.0024 26.4 4.5 17 33-49 36-52 (539)
20 TIGR01614 PME_inhib pectineste 25.4 69 0.0015 22.0 2.3 18 33-50 31-48 (178)
21 PF15240 Pro-rich: Proline-ric 24.9 63 0.0014 24.6 2.2 16 12-27 3-18 (179)
22 TIGR03516 ppisom_GldI peptidyl 24.7 49 0.0011 24.2 1.6 16 1-16 1-16 (177)
23 PF12276 DUF3617: Protein of u 24.1 80 0.0017 21.5 2.5 14 1-14 1-14 (162)
24 PF08396 Toxin_34: Spider toxi 23.6 52 0.0011 22.1 1.4 12 67-78 10-21 (75)
25 COG2991 Uncharacterized protei 23.4 1.2E+02 0.0026 20.5 3.1 11 28-38 45-55 (77)
26 PRK01904 hypothetical protein; 22.1 86 0.0019 23.5 2.5 16 1-16 1-16 (219)
27 PF01826 TIL: Trypsin Inhibito 22.0 3.1 6.7E-05 24.3 -4.3 39 28-70 8-46 (55)
28 PRK11023 outer membrane lipopr 21.8 84 0.0018 22.9 2.3 13 1-13 1-13 (191)
29 PF02402 Lysis_col: Lysis prot 21.8 47 0.001 20.5 0.8 13 3-15 4-16 (46)
30 PF15079 DUF4546: Domain of un 21.7 32 0.00069 26.7 0.1 20 47-66 169-189 (205)
31 PHA02067 hypothetical protein 21.6 69 0.0015 25.3 1.9 12 21-32 14-25 (221)
32 COG4537 ComGC Competence prote 21.5 81 0.0018 22.4 2.1 14 7-20 22-35 (107)
33 PF07771 TSGP1: Tick salivary 21.1 51 0.0011 23.2 1.0 12 1-12 1-12 (120)
34 PRK11443 lipoprotein; Provisio 20.3 79 0.0017 22.2 1.9 6 1-6 1-6 (124)
No 1
>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.
Probab=100.00 E-value=2.2e-38 Score=201.89 Aligned_cols=60 Identities=58% Similarity=1.417 Sum_probs=59.5
Q ss_pred CChHHhHHHHhccCccchHHHHhhhhcCcccccCCCCCCCCCCCCccccccccCCCCCCC
Q 034644 29 FCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 88 (88)
Q Consensus 29 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~gnk~~CpCY~~~~t~~g~pKCP 88 (88)
||+++|++|||+++++++||++||+||++|+|||||||||+||||||+||+||+|+||||
T Consensus 1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP 60 (60)
T PF02704_consen 1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP 60 (60)
T ss_pred CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence 799999999999999999999999999999999999999999999999999999999999
No 2
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=82.19 E-value=1.2 Score=31.58 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=9.4
Q ss_pred CchhHHHHHHHHHHHH
Q 034644 1 MKLHFTTVVVCSLILS 16 (88)
Q Consensus 1 mk~~~~~~ll~~lll~ 16 (88)
|||+++++||+++++.
T Consensus 1 MKll~~lilli~~~~~ 16 (212)
T PF11912_consen 1 MKLLISLILLILLIIN 16 (212)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9987655554444443
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.08 E-value=1.4 Score=29.79 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 034644 8 VVVCSLILS 16 (88)
Q Consensus 8 ~ll~~lll~ 16 (88)
+||++|||+
T Consensus 11 l~LA~lLli 19 (95)
T PF07172_consen 11 LLLAALLLI 19 (95)
T ss_pred HHHHHHHHH
Confidence 333333433
No 4
>PF08027 Albumin_I: Albumin I; InterPro: IPR012512 The albumin I protein, a hormone-like peptide, stimulates kinase activity upon binding a membrane bound 43 kDa receptor. The structure of this region reveals a knottin like fold, comprise of three beta strands [].; GO: 0045735 nutrient reservoir activity, 0009405 pathogenesis; PDB: 1P8B_A 1JU8_A.
Probab=64.90 E-value=0.86 Score=32.84 Aligned_cols=32 Identities=28% Similarity=0.745 Sum_probs=14.4
Q ss_pred CCCCCChHHhHHHHhccCccchHHHHhhhhcCcccccCCCCCC
Q 034644 25 AGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYG 67 (88)
Q Consensus 25 a~~~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~g 67 (88)
..+.+|.+. ||.-..+ -||. .+|.|+|-|..+
T Consensus 17 VEA~~C~g~----Cs~Fe~p-----pCgs--s~CrCiP~~l~~ 48 (120)
T PF08027_consen 17 VEACDCSGV----CSPFEMP-----PCGS--SDCRCIPWGLFV 48 (120)
T ss_dssp -----SECE----E-TTSSS-----CCC---TTSEEEE-SSS-
T ss_pred eeeeccCcc----ccCCcCC-----CCCC--CCeeEEEeeecc
Confidence 344678776 4543321 2443 589999988653
No 5
>PF09257 BCMA-Tall_bind: BCMA, TALL-1 binding; InterPro: IPR015337 Cytokines can be grouped into a family on the basis of sequence, functional and structural similarities [, , ]. Tumor necrosis factor (TNF) (also known as TNF-alpha or cachectin) is a monocyte-derived cytotoxin that has been implicated in tumour regression, septic shock and cachexia [, ]. The protein is synthesised as a prohormone with an unusually long and atypical signal sequence, which is absent from the mature secreted cytokine []. A short hydrophobic stretch of amino acids serves to anchor the prohormone in lipid bilayers []. Both the mature protein and a partially-processed form of the hormone are secreted after cleavage of the propeptide []. There are a number of different families of TNF, but all these cytokines seem to form homotrimeric (or heterotrimeric in the case of LT-alpha/beta) complexes that are recognised by their specific receptors. Members of this entry, which are predominantly found in the tumour necrosis factor receptor superfamily member 17, BCMA, are required for binding to tumour necrosis factor ligand TALL-1 []. ; PDB: 2KN1_A 1OQD_R 1XU2_T.
Probab=60.47 E-value=6.6 Score=23.40 Aligned_cols=21 Identities=29% Similarity=0.754 Sum_probs=16.2
Q ss_pred HhHHHHhccCccchHHHHhhh
Q 034644 33 KCAERCKQAGVQDRCLKYCGI 53 (88)
Q Consensus 33 ~C~~RCs~~~~~~~C~~~C~~ 53 (88)
-|.-|||+..-+-.|.+||+.
T Consensus 16 PChLRCsn~tPP~~Cq~YCna 36 (39)
T PF09257_consen 16 PCHLRCSNNTPPLPCQRYCNA 36 (39)
T ss_dssp EHHHHHTSSS--TTTHHHHHH
T ss_pred cceeecCCCCCCccchhhccc
Confidence 388999997778899999984
No 6
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=55.49 E-value=12 Score=22.39 Aligned_cols=7 Identities=14% Similarity=0.373 Sum_probs=4.8
Q ss_pred CCCChHH
Q 034644 27 SPFCDSK 33 (88)
Q Consensus 27 ~~~C~~~ 33 (88)
..||+..
T Consensus 33 d~DCp~~ 39 (54)
T PF07127_consen 33 DSDCPKD 39 (54)
T ss_pred cccCCCC
Confidence 3678776
No 7
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=48.61 E-value=8.5 Score=26.95 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=10.1
Q ss_pred cccCCCCCChHH-hHHHHhccC
Q 034644 22 PATAGSPFCDSK-CAERCKQAG 42 (88)
Q Consensus 22 ~~~a~~~~C~~~-C~~RCs~~~ 42 (88)
.-+|.++-|.+. |+.+|..++
T Consensus 17 v~ea~s~~CtS~yC~~fCgsa~ 38 (98)
T PF10690_consen 17 VQEAQSISCTSYYCKKFCGSAR 38 (98)
T ss_dssp --------HHHH-HHHHHHHTT
T ss_pred cccccccccchhHHHHhcCCCC
Confidence 344455678888 888887553
No 8
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=47.19 E-value=6.3 Score=24.09 Aligned_cols=6 Identities=50% Similarity=0.578 Sum_probs=0.0
Q ss_pred CchhHH
Q 034644 1 MKLHFT 6 (88)
Q Consensus 1 mk~~~~ 6 (88)
|||-++
T Consensus 1 mKLt~v 6 (75)
T PF02950_consen 1 MKLTCV 6 (75)
T ss_dssp ------
T ss_pred CCcchH
Confidence 677643
No 9
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=45.30 E-value=25 Score=26.44 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHHHHHhhhhcccCCCCCChH
Q 034644 1 MKLHFTTVVVCSLILSFSLLEPATAGSPFCDS 32 (88)
Q Consensus 1 mk~~~~~~ll~~lll~~~~~~~~~a~~~~C~~ 32 (88)
|+..|..++++.+||.++..|....+-.+|++
T Consensus 1 m~ms~~~~v~l~alls~a~aq~~~t~~k~C~s 32 (158)
T KOG4063|consen 1 MMMSFLKTVILLALLSLAAAQAISTGVKQCGS 32 (158)
T ss_pred CchHHHHHHHHHHHHHHhhhcccCcccccccC
Confidence 44444444444444443333322223345654
No 10
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=42.56 E-value=22 Score=23.60 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhhhcccCC
Q 034644 7 TVVVCSLILSFSLLEPATAG 26 (88)
Q Consensus 7 ~~ll~~lll~~~~~~~~~a~ 26 (88)
+.+|+.|+|+.+|...++|+
T Consensus 6 i~VLlaLvLIg~fAVqSdag 25 (71)
T PF04202_consen 6 IAVLLALVLIGSFAVQSDAG 25 (71)
T ss_pred HHHHHHHHHHhhheeeecCc
Confidence 34444445555555445553
No 11
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=41.41 E-value=31 Score=23.79 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=11.3
Q ss_pred CCCCCCCccccccccC
Q 034644 67 GNKHECPCYRDKVNKK 82 (88)
Q Consensus 67 gnk~~CpCY~~~~t~~ 82 (88)
+..|+=|||.|...+.
T Consensus 41 ~~~E~~p~YgNL~~~q 56 (107)
T PF15330_consen 41 QPTEDDPCYGNLELQQ 56 (107)
T ss_pred CCCCCCcccccccccc
Confidence 4556778999987643
No 12
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.33 E-value=42 Score=22.70 Aligned_cols=15 Identities=20% Similarity=0.188 Sum_probs=8.3
Q ss_pred CchhHHHHHHHHHHH
Q 034644 1 MKLHFTTVVVCSLIL 15 (88)
Q Consensus 1 mk~~~~~~ll~~lll 15 (88)
||+++++++++++.+
T Consensus 1 m~~~~~vll~ll~~l 15 (105)
T PRK00888 1 MRLLTLLLLALLVWL 15 (105)
T ss_pred CcHHHHHHHHHHHHH
Confidence 787765554444443
No 13
>PF06607 Prokineticin: Prokineticin; InterPro: IPR023569 The prokineticin family includes prokinectin itself and related proteins such as BM8 and the AVIToxins. The suprachiasmatic nucleus (SCN) controls the circadian rhythm of physiological and behavioural processes in mammals. It has been shown that prokineticin 2 (PK2), a cysteine-rich secreted protein, functions as an output molecule from the SCN circadian clock. PK2 messenger RNA is rhythmically expressed in the SCN, and the phase of PK2 rhythm is responsive to light entrainment. Molecular and genetic studies have revealed that PK2 is a gene that is controlled by a circadian clock []. The prokinectin domain is found in the prokinectin family and the hainantoxins, where it comprises the whole length of the protein. This domain is also found at the C terminus of some members of the Dickkopf family.; PDB: 1IMT_A 2KRA_A.
Probab=32.25 E-value=14 Score=25.38 Aligned_cols=11 Identities=36% Similarity=0.764 Sum_probs=4.8
Q ss_pred CCCCCcccccc
Q 034644 69 KHECPCYRDKV 79 (88)
Q Consensus 69 k~~CpCY~~~~ 79 (88)
.+.|||-.++.
T Consensus 75 ~~~CPC~~gL~ 85 (97)
T PF06607_consen 75 FWRCPCAPGLV 85 (97)
T ss_dssp SSS--B-TT-E
T ss_pred EeeCCCCCCcE
Confidence 47888888773
No 14
>PF07403 DUF1505: Protein of unknown function (DUF1505); InterPro: IPR009981 This family consists of several uncharacterised Caenorhabditis elegans proteins of around 115 resides in length. Members of this family contain 6 highly conserved cysteine residues. The function of this family is unknown.
Probab=31.92 E-value=33 Score=24.43 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=9.4
Q ss_pred CchhHHHHHHHHHHHH
Q 034644 1 MKLHFTTVVVCSLILS 16 (88)
Q Consensus 1 mk~~~~~~ll~~lll~ 16 (88)
|+++++..||++++++
T Consensus 1 Mnf~~~~vl~lsv~vA 16 (114)
T PF07403_consen 1 MNFFPSTVLLLSVTVA 16 (114)
T ss_pred CCchhhhHHHHHHHHH
Confidence 6766655666665443
No 15
>PF15284 PAGK: Phage-encoded virulence factor
Probab=30.86 E-value=62 Score=20.93 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=10.4
Q ss_pred CchhHHHHHHHHHHHH-HhhhhcccC
Q 034644 1 MKLHFTTVVVCSLILS-FSLLEPATA 25 (88)
Q Consensus 1 mk~~~~~~ll~~lll~-~~~~~~~~a 25 (88)
||-+-++||.++|.|+ +.|...++|
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSasamA 26 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSASAMA 26 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 5544344444333333 333344444
No 16
>PRK11505 hypothetical protein; Provisional
Probab=29.31 E-value=54 Score=23.22 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHHHHHHh
Q 034644 1 MKLHFTTVVVCSLILSFS 18 (88)
Q Consensus 1 mk~~~~~~ll~~lll~~~ 18 (88)
||+.+++.|++.|+++..
T Consensus 1 mk~~~l~~ll~g~~~~~~ 18 (106)
T PRK11505 1 MKITLLVTLLFGLVFLTT 18 (106)
T ss_pred CchHHHHHHHHHHHHhhh
Confidence 677766666666666543
No 17
>PLN03207 stomagen; Provisional
Probab=28.35 E-value=79 Score=22.59 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhhh
Q 034644 6 TTVVVCSLILSFSLLE 21 (88)
Q Consensus 6 ~~~ll~~lll~~~~~~ 21 (88)
+.|||.+|||.+.++|
T Consensus 15 lffLl~~llla~~v~q 30 (113)
T PLN03207 15 LFFLLFFLLLGAYVIQ 30 (113)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344455555555554
No 18
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=27.79 E-value=81 Score=17.94 Aligned_cols=27 Identities=30% Similarity=0.790 Sum_probs=19.0
Q ss_pred cccccCCCCCCCC---CCC-CccccccccCC
Q 034644 57 DCKCVPSGTYGNK---HEC-PCYRDKVNKKG 83 (88)
Q Consensus 57 ~C~CVP~Gt~gnk---~~C-pCY~~~~t~~g 83 (88)
.|.=-|.|||-+. .+| +|-.+..|...
T Consensus 10 ~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~ 40 (48)
T PF07699_consen 10 KCQPCPKGTYQDEEGQTSCTPCPPGSTTSSE 40 (48)
T ss_pred ccCCCCCCccCCccCCccCccCcCCCccCCc
Confidence 3444588999644 579 89998877553
No 19
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=27.75 E-value=1.1e+02 Score=26.37 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=12.0
Q ss_pred HhHHHHhccCccchHHH
Q 034644 33 KCAERCKQAGVQDRCLK 49 (88)
Q Consensus 33 ~C~~RCs~~~~~~~C~~ 49 (88)
.=...|+.+.+++.|.+
T Consensus 36 ~Irs~C~~T~YP~lC~s 52 (539)
T PLN02995 36 DIDGWCDKTPYPDPCKC 52 (539)
T ss_pred HHHhhcCCCCChHHHHH
Confidence 33445888888888853
No 20
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=25.41 E-value=69 Score=21.95 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=12.4
Q ss_pred HhHHHHhccCccchHHHH
Q 034644 33 KCAERCKQAGVQDRCLKY 50 (88)
Q Consensus 33 ~C~~RCs~~~~~~~C~~~ 50 (88)
.=+.-|..+.+++.|...
T Consensus 31 ~i~~~C~~t~~~~~C~~~ 48 (178)
T TIGR01614 31 LIKRICKKTEYPNFCIST 48 (178)
T ss_pred HHHHHHcCCCChHHHHHH
Confidence 445567778888888654
No 21
>PF15240 Pro-rich: Proline-rich
Probab=24.92 E-value=63 Score=24.55 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=9.5
Q ss_pred HHHHHHhhhhcccCCC
Q 034644 12 SLILSFSLLEPATAGS 27 (88)
Q Consensus 12 ~lll~~~~~~~~~a~~ 27 (88)
+|||+++++.+++|.+
T Consensus 3 lVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 3 LVLLSVALLALSSAQS 18 (179)
T ss_pred hHHHHHHHHHhhhccc
Confidence 3555566666666643
No 22
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=24.74 E-value=49 Score=24.16 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=9.0
Q ss_pred CchhHHHHHHHHHHHH
Q 034644 1 MKLHFTTVVVCSLILS 16 (88)
Q Consensus 1 mk~~~~~~ll~~lll~ 16 (88)
||.+++++|++++|+.
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (177)
T TIGR03516 1 MKHLIAVILLLLLLLG 16 (177)
T ss_pred CceeHHHHHHHHHHhh
Confidence 7766555555444444
No 23
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=24.12 E-value=80 Score=21.54 Aligned_cols=14 Identities=21% Similarity=0.327 Sum_probs=6.2
Q ss_pred CchhHHHHHHHHHH
Q 034644 1 MKLHFTTVVVCSLI 14 (88)
Q Consensus 1 mk~~~~~~ll~~ll 14 (88)
||.++++++++.+|
T Consensus 1 M~~~~~~~~~~~~~ 14 (162)
T PF12276_consen 1 MKRRLLLALALALL 14 (162)
T ss_pred CchHHHHHHHHHHH
Confidence 56554444433333
No 24
>PF08396 Toxin_34: Spider toxin omega agatoxin/Tx1 family; InterPro: IPR013605 The Tx1 family lethal spider neurotoxin induces excitatory symptoms in mice [].
Probab=23.61 E-value=52 Score=22.08 Aligned_cols=12 Identities=50% Similarity=1.304 Sum_probs=10.1
Q ss_pred CCCCCCCccccc
Q 034644 67 GNKHECPCYRDK 78 (88)
Q Consensus 67 gnk~~CpCY~~~ 78 (88)
|+|++|.|++++
T Consensus 10 G~k~dCqCc~~n 21 (75)
T PF08396_consen 10 GDKSDCQCCRDN 21 (75)
T ss_pred CCcccccccCCC
Confidence 788888888876
No 25
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.39 E-value=1.2e+02 Score=20.45 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=6.8
Q ss_pred CCChHHhHHHH
Q 034644 28 PFCDSKCAERC 38 (88)
Q Consensus 28 ~~C~~~C~~RC 38 (88)
=||+..|+.|=
T Consensus 45 CdC~~pCDt~~ 55 (77)
T COG2991 45 CDCDEPCDTHK 55 (77)
T ss_pred cCCCCchHHHH
Confidence 36777776653
No 26
>PRK01904 hypothetical protein; Provisional
Probab=22.08 E-value=86 Score=23.51 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=7.9
Q ss_pred CchhHHHHHHHHHHHH
Q 034644 1 MKLHFTTVVVCSLILS 16 (88)
Q Consensus 1 mk~~~~~~ll~~lll~ 16 (88)
||+...+++++.|+++
T Consensus 1 MK~~~~~~~~~~l~~s 16 (219)
T PRK01904 1 MKLRKAALAVATLLTS 16 (219)
T ss_pred CchhHHHHHHHHHHHh
Confidence 7865544444444433
No 27
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=22.03 E-value=3.1 Score=24.27 Aligned_cols=39 Identities=31% Similarity=0.799 Sum_probs=24.7
Q ss_pred CCChHHhHHHHhccCccchHHHHhhhhcCcccccCCCCCCCCC
Q 034644 28 PFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKH 70 (88)
Q Consensus 28 ~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~gnk~ 70 (88)
.+|++.|...|+.......|.. .|=+-|.| |+|++-|.+
T Consensus 8 ~~C~~~C~~tC~~~~~~~~C~~---~C~~gC~C-~~G~v~~~~ 46 (55)
T PF01826_consen 8 SECGSPCPRTCDNPNNPEPCSE---PCVEGCFC-PPGYVRNDN 46 (55)
T ss_dssp ESSETSTTCBSSCTTTSSSCSS---S-ESEEEE-TTTEEEETT
T ss_pred CcccCCcCCcCCCCCCCcCcCC---CCCccCCC-CCCeeEcCC
Confidence 3678888888887666665663 33444667 557765544
No 28
>PRK11023 outer membrane lipoprotein; Provisional
Probab=21.79 E-value=84 Score=22.94 Aligned_cols=13 Identities=31% Similarity=0.135 Sum_probs=6.9
Q ss_pred CchhHHHHHHHHH
Q 034644 1 MKLHFTTVVVCSL 13 (88)
Q Consensus 1 mk~~~~~~ll~~l 13 (88)
||++.++++|+++
T Consensus 1 ~~~~~~~~~l~~~ 13 (191)
T PRK11023 1 MKALSPLAVLLSA 13 (191)
T ss_pred CchHHHHHHHHHH
Confidence 7777554444333
No 29
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=21.77 E-value=47 Score=20.47 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHH
Q 034644 3 LHFTTVVVCSLIL 15 (88)
Q Consensus 3 ~~~~~~ll~~lll 15 (88)
+++..++++.++|
T Consensus 4 i~~~~i~~~~~~L 16 (46)
T PF02402_consen 4 IIFIGIFLLTMLL 16 (46)
T ss_pred EEEeHHHHHHHHH
Confidence 4444444444444
No 30
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=21.72 E-value=32 Score=26.74 Aligned_cols=20 Identities=40% Similarity=1.124 Sum_probs=16.0
Q ss_pred HHHHhhhhcCccc-ccCCCCC
Q 034644 47 CLKYCGICCEDCK-CVPSGTY 66 (88)
Q Consensus 47 C~~~C~~CC~~C~-CVP~Gt~ 66 (88)
-+-.|++||++|. |..-.+|
T Consensus 169 ~lH~C~tCcekcllCalk~n~ 189 (205)
T PF15079_consen 169 SLHQCRTCCEKCLLCALKNNY 189 (205)
T ss_pred chhhchhhhhhhhhhhccccc
Confidence 4567999999998 8877655
No 31
>PHA02067 hypothetical protein
Probab=21.56 E-value=69 Score=25.27 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=8.8
Q ss_pred hcccCCCCCChH
Q 034644 21 EPATAGSPFCDS 32 (88)
Q Consensus 21 ~~~~a~~~~C~~ 32 (88)
..+.|++-||..
T Consensus 14 ssA~AASFDCak 25 (221)
T PHA02067 14 SSAMAASFDCNT 25 (221)
T ss_pred ccccCCCCCccc
Confidence 456778889874
No 32
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=21.46 E-value=81 Score=22.43 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhh
Q 034644 7 TVVVCSLILSFSLL 20 (88)
Q Consensus 7 ~~ll~~lll~~~~~ 20 (88)
++|++|+|++.++.
T Consensus 22 VLlIISiLlLl~iP 35 (107)
T COG4537 22 VLLIISILLLLFIP 35 (107)
T ss_pred HHHHHHHHHHHHcc
Confidence 46666666665543
No 33
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=21.12 E-value=51 Score=23.22 Aligned_cols=12 Identities=42% Similarity=0.520 Sum_probs=5.9
Q ss_pred CchhHHHHHHHH
Q 034644 1 MKLHFTTVVVCS 12 (88)
Q Consensus 1 mk~~~~~~ll~~ 12 (88)
|++++++++|++
T Consensus 1 m~~~~~~~vlv~ 12 (120)
T PF07771_consen 1 MGLTVVTLVLVS 12 (120)
T ss_pred CcceeehhhHHh
Confidence 666654444333
No 34
>PRK11443 lipoprotein; Provisional
Probab=20.34 E-value=79 Score=22.24 Aligned_cols=6 Identities=33% Similarity=0.384 Sum_probs=3.3
Q ss_pred CchhHH
Q 034644 1 MKLHFT 6 (88)
Q Consensus 1 mk~~~~ 6 (88)
||.+++
T Consensus 1 Mk~~~~ 6 (124)
T PRK11443 1 MKKFIA 6 (124)
T ss_pred ChHHHH
Confidence 775533
Done!