Query 034644
Match_columns 88
No_of_seqs 101 out of 203
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 07:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2htq_A Neuraminidase; zanamivi 37.5 13 0.00044 30.3 1.5 17 62-78 187-203 (390)
2 4b7j_A Neuraminidase; hydrolas 37.2 10 0.00035 31.5 0.9 16 62-77 269-284 (469)
3 1xu2_R Tumor necrosis factor r 33.5 13 0.00043 22.2 0.7 19 34-52 20-38 (47)
4 1v0z_A Neuraminidase; glycosid 31.5 10 0.00034 30.9 0.0 17 62-78 188-204 (389)
5 1f8d_A Neuraminidase; hydrolas 31.1 10 0.00035 30.8 0.0 17 62-78 188-204 (388)
6 3tia_A Neuraminidase; 6-bladed 29.0 11 0.00039 31.2 -0.1 16 62-77 268-283 (469)
7 3tje_F Tumor necrosis factor r 28.2 21 0.00073 24.6 1.2 23 52-77 41-72 (156)
8 1nmb_N N9 neuraminidase; compl 28.1 17 0.00058 30.2 0.8 17 62-78 270-286 (470)
9 4gdi_A Neuraminidase; influenz 27.5 12 0.00041 30.3 -0.2 17 62-78 190-206 (373)
10 3b7e_A Neuraminidase; 6-bladed 26.7 14 0.00047 30.1 0.0 17 62-78 187-203 (385)
11 2h9e_C Anti-coagulant protein 26.4 4.8 0.00016 25.2 -2.2 49 28-80 13-78 (84)
12 3sal_A Neuraminidase; 6-bladed 25.9 12 0.00041 30.5 -0.4 17 61-77 187-203 (395)
13 3qd6_R CD40L receptor, tumor n 24.4 44 0.0015 22.8 2.3 26 52-80 15-48 (177)
14 1nsc_A Neuraminidase; hydrolas 20.8 13 0.00044 30.2 -1.2 14 62-75 191-204 (390)
No 1
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=37.53 E-value=13 Score=30.29 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCccccc
Q 034644 62 PSGTYGNKHECPCYRDK 78 (88)
Q Consensus 62 P~Gt~gnk~~CpCY~~~ 78 (88)
.+|+.+|.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46889999999999765
No 2
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=37.22 E-value=10 Score=31.50 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCcccc
Q 034644 62 PSGTYGNKHECPCYRD 77 (88)
Q Consensus 62 P~Gt~gnk~~CpCY~~ 77 (88)
.+|+..|.|||.||.+
T Consensus 269 l~gs~~HiEECSCY~~ 284 (469)
T 4b7j_A 269 MNAPNYHYEECSCYPD 284 (469)
T ss_dssp CCCTTCCCCSCEEEEE
T ss_pred cCCCcccceeeeeccC
Confidence 4688888899988865
No 3
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=33.52 E-value=13 Score=22.15 Aligned_cols=19 Identities=32% Similarity=0.871 Sum_probs=16.0
Q ss_pred hHHHHhccCccchHHHHhh
Q 034644 34 CAERCKQAGVQDRCLKYCG 52 (88)
Q Consensus 34 C~~RCs~~~~~~~C~~~C~ 52 (88)
|..||+.+..+..|-.||.
T Consensus 20 C~l~Cs~~~~p~tC~~fC~ 38 (47)
T 1xu2_R 20 CQLRCSSNTPPLTCQRYCN 38 (47)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred hhcccCCCCCcchHHHHHh
Confidence 8899996667888999986
No 4
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=31.48 E-value=10 Score=30.88 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCccccc
Q 034644 62 PSGTYGNKHECPCYRDK 78 (88)
Q Consensus 62 P~Gt~gnk~~CpCY~~~ 78 (88)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (389)
T 1v0z_A 188 LAGNAQHIEECSCYGAG 204 (389)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCccceEEeeeccCC
Confidence 47899999999999765
No 5
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=31.13 E-value=10 Score=30.81 Aligned_cols=17 Identities=35% Similarity=0.849 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCccccc
Q 034644 62 PSGTYGNKHECPCYRDK 78 (88)
Q Consensus 62 P~Gt~gnk~~CpCY~~~ 78 (88)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (388)
T 1f8d_A 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 47889999999999765
No 6
>3tia_A Neuraminidase; 6-bladed beta-propeller, calcium binding, glycosylation, ANT hydrolase-hydrolase inhibitor complex; HET: NAG BMA MAN LNV; 1.80A {Influenza a virus} PDB: 3tib_A* 3tic_A* 2bat_A* 1ivd_A* 1inh_A* 1inw_A* 1inx_A* 1ivc_A* 1ing_A* 1ive_A* 1ivf_A* 1ivg_A* 1nn2_A* 2aep_A* 2aeq_A* 4gzq_A* 4gzo_A* 4gzp_A* 4gzt_A* 4gzs_A* ...
Probab=29.03 E-value=11 Score=31.21 Aligned_cols=16 Identities=38% Similarity=0.789 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCcccc
Q 034644 62 PSGTYGNKHECPCYRD 77 (88)
Q Consensus 62 P~Gt~gnk~~CpCY~~ 77 (88)
.+|+.+|.|||.||-+
T Consensus 268 l~~~~~HiEECSCYp~ 283 (469)
T 3tia_A 268 LSGSAQHIEECSCYPR 283 (469)
T ss_dssp CCSSCCCCEEEEEEEE
T ss_pred cCCCCccceeeeecCC
Confidence 4566677777777754
No 7
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=28.22 E-value=21 Score=24.56 Aligned_cols=23 Identities=30% Similarity=0.951 Sum_probs=14.8
Q ss_pred hhhcCcccccCCCCCCC--------CCCC-Ccccc
Q 034644 52 GICCEDCKCVPSGTYGN--------KHEC-PCYRD 77 (88)
Q Consensus 52 ~~CC~~C~CVP~Gt~gn--------k~~C-pCY~~ 77 (88)
+.||.+| |||||=. .-+| ||-.+
T Consensus 41 ~~CC~~C---ppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 41 QFCHKPC---PPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp TTCSSCB---CTTEEESSCCCSSSCCCCEEECCTT
T ss_pred CeECCCC---CCCCeECCcCCCCCCCCcceeCCCC
Confidence 5667777 6887721 3567 67665
No 8
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex (hydrolase- immunoglobulin) complex; HET: NAG BMA MAN; 2.20A {Influenza a virus} SCOP: b.68.1.1
Probab=28.09 E-value=17 Score=30.20 Aligned_cols=17 Identities=35% Similarity=0.833 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCccccc
Q 034644 62 PSGTYGNKHECPCYRDK 78 (88)
Q Consensus 62 P~Gt~gnk~~CpCY~~~ 78 (88)
.+|+..|.|||.||-+.
T Consensus 270 l~~~~~HiEECscy~~~ 286 (470)
T 1nmb_N 270 LTGTAKHIEECSCYGEQ 286 (470)
T ss_dssp CCSSCSCCCSCEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 35777888888888654
No 9
>4gdi_A Neuraminidase; influenza virus, beta-propeller, EC viral protein; HET: NAG BMA FUC FUL GOL MAN; 1.95A {Influenza a virus} PDB: 4gez_A* 4fvk_A* 4gdj_A*
Probab=27.51 E-value=12 Score=30.28 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCccccc
Q 034644 62 PSGTYGNKHECPCYRDK 78 (88)
Q Consensus 62 P~Gt~gnk~~CpCY~~~ 78 (88)
.+|+..|.|||.||.+.
T Consensus 190 l~~s~~HiEECSCYp~~ 206 (373)
T 4gdi_A 190 LNTTGINFEYSTCYTIN 206 (373)
T ss_dssp CCCTTCCCEEEEEEEET
T ss_pred cCCCCCCceeeeecCCC
Confidence 36888999999999653
No 10
>3b7e_A Neuraminidase; 6-bladed beta-propeller, glycosidase, hydrolase, membrane, transmembrane, virion; HET: NAG FUC ZMR; 1.45A {Influenza a virus} PDB: 3beq_A* 3cye_A* 2hty_A* 2hu0_A* 2hu4_A* 3cl2_A* 3ckz_A* 3cl0_A* 3ti4_A* 3nss_A* 3ti3_A* 3ti5_A* 3ti6_A* 2htv_A* 2htw_A*
Probab=26.68 E-value=14 Score=30.06 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCccccc
Q 034644 62 PSGTYGNKHECPCYRDK 78 (88)
Q Consensus 62 P~Gt~gnk~~CpCY~~~ 78 (88)
.+|+..|.|||.||-+.
T Consensus 187 l~gs~~HiEECSCYp~~ 203 (385)
T 3b7e_A 187 LNAPNYHYEECSCYPDT 203 (385)
T ss_dssp CCCTTCCCEEEEEEEET
T ss_pred cCCCccceEeeeEecCC
Confidence 46889999999999765
No 11
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=26.36 E-value=4.8 Score=25.22 Aligned_cols=49 Identities=31% Similarity=0.727 Sum_probs=20.5
Q ss_pred CCChH-HhHHHHhcc-------Cc-cchH-HHHhhhhcCcccccCCCCCCCC-------CCCCccccccc
Q 034644 28 PFCDS-KCAERCKQA-------GV-QDRC-LKYCGICCEDCKCVPSGTYGNK-------HECPCYRDKVN 80 (88)
Q Consensus 28 ~~C~~-~C~~RCs~~-------~~-~~~C-~~~C~~CC~~C~CVP~Gt~gnk-------~~CpCY~~~~t 80 (88)
.+|++ +|...|+.. .+ ...| .+.|. .-|.|.+ |.+-|. ++|||+.+-..
T Consensus 13 ~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~~-G~vr~~~g~CV~~~~Cpc~~~~~~ 78 (84)
T 2h9e_C 13 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCEE-GFYRNKDDKCVSAEDCELDNMDFI 78 (84)
T ss_dssp C-------CCBCCCTTCC----------------------CEECS-SCEECTTCCEECHHHHGGGGEEEE
T ss_pred CCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCCC-CeEEcCCCCEECHHHCCCCcCCeE
Confidence 47888 999889853 12 3578 56665 6788854 887763 57888765443
No 12
>3sal_A Neuraminidase; 6-bladed beta-propeller, hydrolase, calcium binding, glycosy; HET: NAG BMA; 1.50A {Influenza a virus} PDB: 3san_A* 3ti8_A* 4gb1_A* 3o9j_A* 3o9k_A*
Probab=25.94 E-value=12 Score=30.48 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=14.3
Q ss_pred cCCCCCCCCCCCCcccc
Q 034644 61 VPSGTYGNKHECPCYRD 77 (88)
Q Consensus 61 VP~Gt~gnk~~CpCY~~ 77 (88)
.++|..+|.|||.||-+
T Consensus 187 ~l~~~~qHiEECSCYp~ 203 (395)
T 3sal_A 187 EVSFQGGHIEECSCYPN 203 (395)
T ss_dssp EECCTTCCCEEEEEEEE
T ss_pred ecCCCCccceeeeecCC
Confidence 35788899999999965
No 13
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=24.40 E-value=44 Score=22.84 Aligned_cols=26 Identities=31% Similarity=0.738 Sum_probs=16.6
Q ss_pred hhhcCcccccCCCCCCC-------CCCC-Cccccccc
Q 034644 52 GICCEDCKCVPSGTYGN-------KHEC-PCYRDKVN 80 (88)
Q Consensus 52 ~~CC~~C~CVP~Gt~gn-------k~~C-pCY~~~~t 80 (88)
|.||.+| |+|+|=. .-+| ||-.+..+
T Consensus 15 ~~CC~~C---ppG~~~~~~C~~~~~t~C~pC~~gty~ 48 (177)
T 3qd6_R 15 SQCCSLC---QPGQKLVSDCTEFTETECLPCGESEFL 48 (177)
T ss_dssp SSEECCB---CTTBCCCBCCCSSCCCBCCBCCSSEEC
T ss_pred CeECCCC---CCCCEeccCCCCCCCCccccCCCCcee
Confidence 6778887 5888743 3478 68555433
No 14
>1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A {Influenza b virus} SCOP: b.68.1.1 PDB: 1a4g_A* 1nsb_A* 1a4q_A* 1nsd_A* 3k37_A* 3k36_A* 3k38_A* 3k39_A* 3k3a_A* 1b9v_A* 1b9s_A* 1b9t_A* 1inv_A* 1ivb_A* 1inf_A* 1vcj_A*
Probab=20.78 E-value=13 Score=30.23 Aligned_cols=14 Identities=36% Similarity=0.904 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCcc
Q 034644 62 PSGTYGNKHECPCY 75 (88)
Q Consensus 62 P~Gt~gnk~~CpCY 75 (88)
.+|+..|.|||.||
T Consensus 191 lsgsaqHiEECSCY 204 (390)
T 1nsc_A 191 PTGRVEHTEECTCG 204 (390)
T ss_dssp CEESCSBCEEEEEE
T ss_pred cCCCccceEeeeec
Confidence 46888999999999
Done!