Query 034644
Match_columns 88
No_of_seqs 101 out of 203
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 07:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034644.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034644hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h9ec1 g.22.1.1 (C:6-83) Anti 63.9 0.22 1.6E-05 29.5 -2.3 53 28-81 8-74 (78)
2 d1exta1 g.24.1.1 (A:13-71) Tum 52.6 1.5 0.00011 24.7 0.2 26 52-80 15-49 (59)
3 d1jv2b5 g.3.11.6 (B:563-605) I 49.7 2.8 0.0002 23.0 1.0 19 55-73 21-40 (43)
4 d1xu2r_ g.24.1.2 (R:) Tumor ne 48.2 2.6 0.00019 22.6 0.7 19 34-52 17-35 (36)
5 d2aepa1 b.68.1.1 (A:83-469) In 43.2 2.4 0.00017 32.5 0.0 19 61-79 185-203 (387)
6 d1f8ea_ b.68.1.1 (A:) Influenz 39.0 3 0.00022 32.0 0.0 17 62-78 188-204 (388)
7 d2heyr3 g.24.1.1 (R:29-82) Tum 25.0 5.1 0.00037 22.1 -0.7 26 52-80 12-45 (54)
8 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 24.4 1.2 8.4E-05 25.2 -3.7 35 28-66 11-45 (60)
9 d1nsca_ b.68.1.1 (A:) Influenz 23.6 5.7 0.00041 30.4 -0.8 18 61-78 190-208 (390)
10 d1kloa3 g.3.11.2 (A:122-172) L 22.1 12 0.00087 19.9 0.6 20 58-77 1-27 (51)
No 1
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=63.91 E-value=0.22 Score=29.52 Aligned_cols=53 Identities=30% Similarity=0.657 Sum_probs=22.5
Q ss_pred CCChH-HhHHHHhccCccchHHHHhhh------hcCcccccCCCCCCCC-------CCCCcccccccc
Q 034644 28 PFCDS-KCAERCKQAGVQDRCLKYCGI------CCEDCKCVPSGTYGNK-------HECPCYRDKVNK 81 (88)
Q Consensus 28 ~~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~~C~CVP~Gt~gnk-------~~CpCY~~~~t~ 81 (88)
.+|.+ .|..-|+.-.....|...++. |=+-|.| |+|++-|. ++|||+-+-+..
T Consensus 8 ~~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~CpC~~~g~~Y 74 (78)
T d2h9ec1 8 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCELDNMDFIY 74 (78)
T ss_dssp C-------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred cccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCCcccCCEEc
Confidence 34654 466666654444445444432 3456778 89998654 468898665544
No 2
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.61 E-value=1.5 Score=24.67 Aligned_cols=26 Identities=38% Similarity=1.078 Sum_probs=17.8
Q ss_pred hhhcCcccccCCCCC------CC--CCCC-Cccccccc
Q 034644 52 GICCEDCKCVPSGTY------GN--KHEC-PCYRDKVN 80 (88)
Q Consensus 52 ~~CC~~C~CVP~Gt~------gn--k~~C-pCY~~~~t 80 (88)
+.||.+| |+|+| +. .-+| ||-..-.+
T Consensus 15 ~~cC~~C---ppG~~~~~~Ct~~~~~t~C~pC~~gtyt 49 (59)
T d1exta1 15 SICCTKC---HKGTYLYNDCPGPGQDTDCRECESGSFT 49 (59)
T ss_dssp TCEEECB---CTTEEEEECCSSTTSCCEEEECCTTEEC
T ss_pred CcCCCCC---CCCCeecCccCCCCCCCEeccCCCCCcc
Confidence 3567776 89988 42 4688 88776544
No 3
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.68 E-value=2.8 Score=22.96 Aligned_cols=19 Identities=42% Similarity=1.424 Sum_probs=13.9
Q ss_pred cCcccccCCCCCCCC-CCCC
Q 034644 55 CEDCKCVPSGTYGNK-HECP 73 (88)
Q Consensus 55 C~~C~CVP~Gt~gnk-~~Cp 73 (88)
|++|.|-.||-+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999767776755 5565
No 4
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.20 E-value=2.6 Score=22.55 Aligned_cols=19 Identities=32% Similarity=0.871 Sum_probs=17.0
Q ss_pred hHHHHhccCccchHHHHhh
Q 034644 34 CAERCKQAGVQDRCLKYCG 52 (88)
Q Consensus 34 C~~RCs~~~~~~~C~~~C~ 52 (88)
|.-|||..+-+-.|.+||+
T Consensus 17 c~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 17 CQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred ceeecCCCCCchhhhhhcc
Confidence 7889998888999999996
No 5
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=43.23 E-value=2.4 Score=32.55 Aligned_cols=19 Identities=32% Similarity=0.572 Sum_probs=15.9
Q ss_pred cCCCCCCCCCCCCcccccc
Q 034644 61 VPSGTYGNKHECPCYRDKV 79 (88)
Q Consensus 61 VP~Gt~gnk~~CpCY~~~~ 79 (88)
.++|+.++.|||.||.+..
T Consensus 185 ~l~g~~~HiEECSCYp~~~ 203 (387)
T d2aepa1 185 PLSGSAQHVEECSCYPRYP 203 (387)
T ss_dssp ECCSSCCCCEEEEEEEETT
T ss_pred ecCCCcCceEeeeecCCCC
Confidence 3679999999999998763
No 6
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=39.03 E-value=3 Score=31.96 Aligned_cols=17 Identities=35% Similarity=0.849 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCccccc
Q 034644 62 PSGTYGNKHECPCYRDK 78 (88)
Q Consensus 62 P~Gt~gnk~~CpCY~~~ 78 (88)
++|+.++.|||.||.+.
T Consensus 188 l~g~~~HiEECSCYp~~ 204 (388)
T d1f8ea_ 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeecCCC
Confidence 57899999999999874
No 7
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.02 E-value=5.1 Score=22.11 Aligned_cols=26 Identities=31% Similarity=0.805 Sum_probs=16.1
Q ss_pred hhhcCcccccCCCCC-------CCCCCC-Cccccccc
Q 034644 52 GICCEDCKCVPSGTY-------GNKHEC-PCYRDKVN 80 (88)
Q Consensus 52 ~~CC~~C~CVP~Gt~-------gnk~~C-pCY~~~~t 80 (88)
|.||.+| ||||| +..-+| ||-.+..|
T Consensus 12 g~CC~~C---~pG~~~~~~Cs~~~~t~C~pC~~gtyt 45 (54)
T d2heyr3 12 DRCCHEC---RPGNGMVSRCSRSQNTVCRPCGPGFYN 45 (54)
T ss_dssp TEEEECB---CTTEEEEECCCSSCCCEEEECCTTEEC
T ss_pred CeECCCC---CCCCeEcCcCCCCCCCeeccCcCCCcc
Confidence 5678776 78876 334567 66555443
No 8
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=24.40 E-value=1.2 Score=25.20 Aligned_cols=35 Identities=34% Similarity=0.756 Sum_probs=24.4
Q ss_pred CCChHHhHHHHhccCccchHHHHhhhhcCcccccCCCCC
Q 034644 28 PFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTY 66 (88)
Q Consensus 28 ~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~ 66 (88)
..|+++|..-|+.-.....|.+.|- +-|.| |+|++
T Consensus 11 ~~C~s~Cp~tC~~~~~~~~C~~~C~---eGC~C-p~G~v 45 (60)
T d1hx2a_ 11 QTCASSCPKTCETRNKLVLCDKKCN---QRCGC-ISGTV 45 (60)
T ss_dssp ESSCCSSCCCTTTCCCSSSCSSCCC---SEEEE-CTTCE
T ss_pred CcccCCCccccCCCCCCCCCCCCCC---ccCCC-CCCEe
Confidence 4678888888887666666766443 55778 78876
No 9
>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus, different strains [TaxId: 11520]}
Probab=23.63 E-value=5.7 Score=30.39 Aligned_cols=18 Identities=28% Similarity=0.886 Sum_probs=13.9
Q ss_pred cCCCCCCCCCCCCc-cccc
Q 034644 61 VPSGTYGNKHECPC-YRDK 78 (88)
Q Consensus 61 VP~Gt~gnk~~CpC-Y~~~ 78 (88)
.++|..++.|||.| |.+.
T Consensus 190 ~l~g~~~HiEECSC~Yp~~ 208 (390)
T d1nsca_ 190 FPTGRVEHTEECTCGFASN 208 (390)
T ss_dssp CCEESCSBCEEEEEEESSS
T ss_pred ecCCCcCceEeeeccCCCC
Confidence 35688889999999 7654
No 10
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.12 E-value=12 Score=19.93 Aligned_cols=20 Identities=35% Similarity=0.964 Sum_probs=13.4
Q ss_pred ccccCCCCCCCC-------CCCCcccc
Q 034644 58 CKCVPSGTYGNK-------HECPCYRD 77 (88)
Q Consensus 58 C~CVP~Gt~gnk-------~~CpCY~~ 77 (88)
|.|-|.||.++. ..|+|-.+
T Consensus 1 C~C~~~Gs~~~~~~Cd~~tGqC~Ck~~ 27 (51)
T d1kloa3 1 CACNPYGTVQQQSSCNPVTGQCQCLPH 27 (51)
T ss_dssp CCCCTTTBGGGCCCCCTTTCCCCBCTT
T ss_pred CcCCCCcccCCCCccCCCCCeecCCCC
Confidence 678899987654 35666544
Done!