BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034645
MCSLKHKIMGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSA
CMDAQTNKKRKPWGSINYHLQRLNRGRK

High Scoring Gene Products

Symbol, full name Information P value
AT1G47278 protein from Arabidopsis thaliana 6.2e-30

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034645
        (88 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:4010713530 - symbol:AT1G47278 "AT1G47278" spec...   331  6.2e-30   1
POMBASE|SPAC24C9.13c - symbol:mrp10 "mitochondrial riboso...   103  9.0e-06   1


>TAIR|locus:4010713530 [details] [associations]
            symbol:AT1G47278 "AT1G47278" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 EMBL:DQ487441 IPI:IPI00846217
            RefSeq:NP_001077684.1 UniGene:At.49449 PRIDE:Q1G3Z3
            EnsemblPlants:AT1G47278.2 GeneID:5007783 KEGG:ath:AT1G47278
            TAIR:At1g47278 OMA:LYINPKK PhylomeDB:Q1G3Z3 ProtClustDB:CLSN2693789
            Genevestigator:Q1G3Z3 Uniprot:Q1G3Z3
        Length = 91

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 57/85 (67%), Positives = 70/85 (82%)

Query:     4 LKHKIMGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMD 63
             ++  IMGRKAG LYINPKK GN+AKPCMKEM++FLNCM+LN +  +KC +QK+LLS CM 
Sbjct:     7 VERAIMGRKAGNLYINPKKLGNLAKPCMKEMVSFLNCMALNNIKDDKCEKQKQLLSVCMQ 66

Query:    64 AQTNKKRKPWGSINYHLQRLNRGRK 88
              Q++ K K WG+INYHLQRL RGRK
Sbjct:    67 GQSDHKNKSWGNINYHLQRLTRGRK 91


>POMBASE|SPAC24C9.13c [details] [associations]
            symbol:mrp10 "mitochondrial ribosomal protein subunit
            Mrp10 (predicted)" species:4896 "Schizosaccharomyces pombe"
            [GO:0003735 "structural constituent of ribosome" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005763 "mitochondrial small ribosomal subunit"
            evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006412
            "translation" evidence=ISS] [GO:0032543 "mitochondrial translation"
            evidence=NAS] PomBase:SPAC24C9.13c GO:GO:0005829 GO:GO:0005634
            EMBL:CU329670 GO:GO:0003735 GO:GO:0032543 InterPro:IPR010625
            Pfam:PF06747 GO:GO:0005763 PIR:T38354 RefSeq:NP_594038.1
            EnsemblFungi:SPAC24C9.13c.1 GeneID:2542645 KEGG:spo:SPAC24C9.13c
            eggNOG:NOG316499 HOGENOM:HOG000211589 OMA:ENTINYH OrthoDB:EOG4WQ4CF
            NextBio:20803694 InterPro:IPR017264 PIRSF:PIRSF037706
            Uniprot:O13973
        Length = 88

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 26/72 (36%), Positives = 37/72 (51%)

Query:    16 LYINPKKFGNIAKPCMKEMITFLNCMSLN--QMNSEKCARQKELLSACMDAQTNKKRKPW 73
             L + PK+  N   PC +EM   L C   +  Q ++ +CA     L  CM   T++K K  
Sbjct:    17 LRVRPKREKNTI-PCGQEMAALLGCWQNHGGQTDTAQCANLVAALENCMKT-THRKTKSE 74

Query:    74 GSINYHLQRLNR 85
              +INYHL RL +
Sbjct:    75 NTINYHLARLGK 86


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.132   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        88   0.00091  102 3  11 22  0.42    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  543 (58 KB)
  Total size of DFA:  110 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.51u 0.14s 9.65t   Elapsed:  00:00:00
  Total cpu time:  9.51u 0.14s 9.65t   Elapsed:  00:00:00
  Start:  Thu May  9 22:18:24 2013   End:  Thu May  9 22:18:24 2013

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