BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034645
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O13973|MRP10_SCHPO 37S ribosomal protein mrp10, mitochondrial OS=Schizosaccharomyces
          pombe (strain 972 / ATCC 24843) GN=mrp10 PE=3 SV=1
          Length = 88

 Score = 39.3 bits (90), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 16 LYINPKKFGNIAKPCMKEMITFLNCMSLN--QMNSEKCARQKELLSACMDAQTNKKRKPW 73
          L + PK+  N   PC +EM   L C   +  Q ++ +CA     L  CM   T++K K  
Sbjct: 17 LRVRPKREKNTI-PCGQEMAALLGCWQNHGGQTDTAQCANLVAALENCMKT-THRKTKSE 74

Query: 74 GSINYHLQRLNR 85
           +INYHL RL +
Sbjct: 75 NTINYHLARLGK 86


>sp|A8XXC0|TTL12_CAEBR Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis briggsae
           GN=ttll-12 PE=4 SV=2
          Length = 672

 Score = 30.8 bits (68), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 40  CMSLNQMNSEKCARQKELLSACMDAQTNKKRKPWGSINYHL 80
           C  +NQ   E C   K+LL+AC  A  +  +  W  + Y+L
Sbjct: 385 CAQINQFPFESCITVKDLLAAC--AMRDPSKNDWYQLTYNL 423


>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
          Length = 494

 Score = 29.6 bits (65), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 6   HKIMGRKAGTLYINPKKFGNIAKPCMKEMITFLNCMSLNQMNSEKCARQKELL 58
           H   GR+ G L    K   N+     + +I+  N  +L+   +E+C   +E+L
Sbjct: 424 HMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEIL 476


>sp|Q09512|TTL12_CAEEL Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis elegans
           GN=ttll-12 PE=4 SV=1
          Length = 662

 Score = 29.3 bits (64), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 40  CMSLNQMNSEKCARQKELLSACMDAQTNKKRKPWGSINYHL 80
           C  +NQ   E C   K+LL+AC  A  +  +  W  + Y+L
Sbjct: 377 CGMINQFPFESCITVKDLLAAC--AMRDPAKNDWYQLTYNL 415


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.132    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,424,571
Number of Sequences: 539616
Number of extensions: 889824
Number of successful extensions: 1877
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1873
Number of HSP's gapped (non-prelim): 7
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)