Query 034645
Match_columns 88
No_of_seqs 102 out of 125
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ei0_A P8MTCP1; helix-turn-hel 97.6 0.00013 4.4E-09 40.5 4.4 36 28-63 1-36 (38)
2 1hp8_A HU-P8; leukemia, cystei 97.4 0.00035 1.2E-08 43.4 5.2 40 26-65 3-42 (68)
3 2lqt_A Coiled-coil-helix-coile 93.8 0.089 3.1E-06 33.8 4.3 39 26-64 12-50 (85)
4 2lql_A Coiled-coil-helix-coile 93.4 0.04 1.4E-06 36.6 2.2 41 27-67 58-98 (113)
5 2k3j_A Mitochondrial intermemb 88.1 0.86 2.9E-05 31.8 4.9 42 26-67 64-107 (146)
6 2zxt_A Maltose-binding peripla 84.6 1.4 4.9E-05 33.4 5.0 42 26-67 403-446 (465)
7 1u96_A Cytochrome C oxidase co 76.7 2.3 7.9E-05 26.2 3.0 38 29-66 25-62 (69)
8 2db7_A Hairy/enhancer-OF-split 73.9 6.3 0.00022 23.5 4.4 38 28-65 25-62 (64)
9 2lql_A Coiled-coil-helix-coile 59.7 6.8 0.00023 25.6 2.7 38 27-64 12-50 (113)
10 3ezq_A Tumor necrosis factor r 31.8 80 0.0027 20.6 4.5 37 27-63 45-81 (115)
11 1hp9_A Kappa-hefutoxin 1; scor 24.0 28 0.00097 17.3 0.9 15 39-54 7-21 (26)
12 3vhs_A ATPase wrnip1; zinc fin 22.8 30 0.001 17.6 0.9 10 74-83 19-28 (29)
13 3oq9_A Tumor necrosis factor r 21.5 48 0.0016 20.5 1.8 31 32-62 42-72 (86)
14 2l0y_B HCG2020266, COX17 cytoc 21.3 16 0.00055 22.3 -0.4 25 39-65 39-63 (67)
No 1
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=97.55 E-value=0.00013 Score=40.52 Aligned_cols=36 Identities=25% Similarity=0.556 Sum_probs=34.0
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 034645 28 KPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMD 63 (88)
Q Consensus 28 ~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~ 63 (88)
.||-.+.=++..|+..|+|+.++|....++|+.|=.
T Consensus 1 dpC~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc~ 36 (38)
T 1ei0_A 1 DPCQKQAAEIQKCLQANSYLESKCQAVIQELKKCAA 36 (38)
T ss_dssp CCSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999965
No 2
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=97.37 E-value=0.00035 Score=43.44 Aligned_cols=40 Identities=23% Similarity=0.466 Sum_probs=36.9
Q ss_pred CCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhh
Q 034645 26 IAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQ 65 (88)
Q Consensus 26 ~~~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~~ 65 (88)
+..||-.+.=++..|+..|+|+.++|..+.++|+.|-...
T Consensus 3 ~~dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~~~ 42 (68)
T 1hp8_A 3 QKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQY 42 (68)
T ss_dssp SCCTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTS
T ss_pred CCCchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999997644
No 3
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=93.84 E-value=0.089 Score=33.80 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=35.3
Q ss_pred CCCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Q 034645 26 IAKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDA 64 (88)
Q Consensus 26 ~~~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~ 64 (88)
..+||..|=..-+.|+-.|+|+-+.|...-+.-++|-..
T Consensus 12 d~nPC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CKk~ 50 (85)
T 2lqt_A 12 DINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRF 50 (85)
T ss_dssp --CCCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999999999999654
No 4
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=93.36 E-value=0.04 Score=36.55 Aligned_cols=41 Identities=17% Similarity=0.460 Sum_probs=36.2
Q ss_pred CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhcC
Q 034645 27 AKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQTN 67 (88)
Q Consensus 27 ~~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~~~~ 67 (88)
...|..+|.++-.|+-.|..+...|.++.+.|..|.++-..
T Consensus 58 ~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Cae~v~~ 98 (113)
T 2lql_A 58 RQACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAEQVQP 98 (113)
T ss_dssp HHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHHTTC--
T ss_pred HHHhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcc
Confidence 45799999999999999999999999999999999976654
No 5
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A
Probab=88.09 E-value=0.86 Score=31.77 Aligned_cols=42 Identities=17% Similarity=0.548 Sum_probs=34.6
Q ss_pred CCCChHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHhhcC
Q 034645 26 IAKPCMKEMITFLNCMSLN--QMNSEKCARQKELLSACMDAQTN 67 (88)
Q Consensus 26 ~~~pC~~eMs~lL~Cwasn--g~~~~~Ca~~~~~L~~Cm~~~~~ 67 (88)
...||..++-..+.||..+ .--.+.|.++-.+|+.||...+-
T Consensus 64 a~GPCG~eFreAfsCF~~S~~e~Kg~dC~e~F~~mq~Cm~~~P~ 107 (146)
T 2k3j_A 64 ASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPD 107 (146)
T ss_dssp TSSSTHHHHHHHHHHHHHHCCSSTTTTTHHHHHHHHHHHHHCSS
T ss_pred CCCCcHHHHHHHHHhhccCccccccchHHHHHHHHHHHHHHChH
Confidence 3568999999999999443 35678999999999999988753
No 6
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=84.57 E-value=1.4 Score=33.43 Aligned_cols=42 Identities=14% Similarity=0.437 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHhhcC
Q 034645 26 IAKPCMKEMITFLNCMSLNQ--MNSEKCARQKELLSACMDAQTN 67 (88)
Q Consensus 26 ~~~pC~~eMs~lL~Cwasng--~~~~~Ca~~~~~L~~Cm~~~~~ 67 (88)
...||-.++-.-+.|+-.+. .-.+.|.++-..|+.||...+.
T Consensus 403 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 446 (465)
T 2zxt_A 403 AHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPE 446 (465)
T ss_dssp TSSTTHHHHHHHHHHHHHCCSSSTTGGGHHHHHHHHHHHTTCTT
T ss_pred CCCCchHHHHHHHHhhhcCccccccchHHHHHHHHHHHHHHCHH
Confidence 35599999999999998665 5667999999999999987753
No 7
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=76.68 E-value=2.3 Score=26.20 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhc
Q 034645 29 PCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQT 66 (88)
Q Consensus 29 pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~~~ 66 (88)
.|-.+=.+==.|.-.+|.++..|..++.+-+.||....
T Consensus 25 aCpetK~aRDeCil~~gee~~~C~~lIeahk~CMr~~G 62 (69)
T 1u96_A 25 VCKPEKEERDTCILFNGQDSEKCKEFIEKYKECMKGYG 62 (69)
T ss_dssp TSSHHHHHHHHHHHHSCSCSGGGHHHHHHHHHHHHTTT
T ss_pred eCcchhhHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcC
Confidence 45666677778999999888899999999999998764
No 8
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=73.87 E-value=6.3 Score=23.48 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhh
Q 034645 28 KPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMDAQ 65 (88)
Q Consensus 28 ~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~~~ 65 (88)
..|+.|.+.+|+..-.-+-.++.+..+.+-|..|+...
T Consensus 25 ~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~~~~ 62 (64)
T 2db7_A 25 RECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQR 62 (64)
T ss_dssp HHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhcc
Confidence 46999999999975544444569999999999998653
No 9
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=59.72 E-value=6.8 Score=25.60 Aligned_cols=38 Identities=18% Similarity=0.435 Sum_probs=27.8
Q ss_pred CCChHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHh
Q 034645 27 AKPCMKEMITFLNCMSLNQM-NSEKCARQKELLSACMDA 64 (88)
Q Consensus 27 ~~pC~~eMs~lL~Cwasng~-~~~~Ca~~~~~L~~Cm~~ 64 (88)
+..|-.++..++.|-+.|.. +-..|..+-.+|..|...
T Consensus 12 ak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~ 50 (113)
T 2lql_A 12 ARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSS 50 (113)
T ss_dssp --CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHT
T ss_pred HHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhc
Confidence 34588888888889887754 456688888888888753
No 10
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=31.82 E-value=80 Score=20.59 Aligned_cols=37 Identities=8% Similarity=-0.040 Sum_probs=31.0
Q ss_pred CCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 034645 27 AKPCMKEMITFLNCMSLNQMNSEKCARQKELLSACMD 63 (88)
Q Consensus 27 ~~pC~~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm~ 63 (88)
+..+...--.||-.|....-..+....++++|+.|--
T Consensus 45 ~~d~~Eq~~qlLr~W~~~~G~~aa~~~Li~aLr~~~l 81 (115)
T 3ezq_A 45 VQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKKANL 81 (115)
T ss_dssp SSCHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhCcccHHHHHHHHHHHccc
Confidence 3456677788999999888788899999999999953
No 11
>1hp9_A Kappa-hefutoxin 1; scorpion toxin, gating modifier, voltage-gated potassium channel; NMR {Synthetic} SCOP: j.33.2.1
Probab=23.97 E-value=28 Score=17.33 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=10.0
Q ss_pred HHHhcCCCChHHHHHH
Q 034645 39 NCMSLNQMNSEKCARQ 54 (88)
Q Consensus 39 ~Cwasng~~~~~Ca~~ 54 (88)
+||.. |.+.+.|.++
T Consensus 7 ~cw~~-g~deetck~~ 21 (26)
T 1hp9_A 7 NCWRE-GNDEETCKER 21 (26)
T ss_dssp HHHHH-HSCTTHHHHH
T ss_pred HHHHc-cCcHHHHHHH
Confidence 79975 4566677654
No 12
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.83 E-value=30 Score=17.58 Aligned_cols=10 Identities=50% Similarity=0.677 Sum_probs=7.9
Q ss_pred CChHHHHHhh
Q 034645 74 GSINYHLQRL 83 (88)
Q Consensus 74 stINYHL~Rl 83 (88)
--||-||.|-
T Consensus 19 ahin~hldrc 28 (29)
T 3vhs_A 19 AHINSHLDRC 28 (29)
T ss_dssp GGHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 4699999873
No 13
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=21.51 E-value=48 Score=20.46 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 034645 32 KEMITFLNCMSLNQMNSEKCARQKELLSACM 62 (88)
Q Consensus 32 ~eMs~lL~Cwasng~~~~~Ca~~~~~L~~Cm 62 (88)
..--.||..|....-..+....+.++|+.|-
T Consensus 42 Eq~~qmL~~W~~~~g~~a~~~~Li~~Lr~~~ 72 (86)
T 3oq9_A 42 EQKVQLLLCWYQSHGKSDAYQDLIKGLKKAE 72 (86)
T ss_dssp THHHHHHHHHHHHSCSSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHcc
Confidence 4566789999977666778999999999983
No 14
>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C pseudogene (COX17); oxidative protein folding, macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A 2rn9_A 2rnb_A
Probab=21.30 E-value=16 Score=22.26 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=14.9
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHhh
Q 034645 39 NCMSLNQMNSEKCARQKELLSACMDAQ 65 (88)
Q Consensus 39 ~Cwasng~~~~~Ca~~~~~L~~Cm~~~ 65 (88)
.|.-.+|.+ .|..++++-+.||...
T Consensus 39 eCil~~gee--~C~~lIeahk~Cmr~~ 63 (67)
T 2l0y_B 39 ACIIEKGEE--HCGHLIEAHKESMRAL 63 (67)
T ss_dssp --------C--CSCSSHHHHHHHHHHH
T ss_pred HHHHhcCHH--HHHHHHHHHHHHHHHc
Confidence 455556644 8999999999999864
Done!