BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034648
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q63517|CENPI_RAT Centromere protein I OS=Rattus norvegicus GN=Cenpi PE=2 SV=1
          Length = 745

 Score = 31.6 bits (70), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 37/78 (47%)

Query: 4   LLKTSIASHLRSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSVWRLKR 63
           +L+ S +    +H  ++ EDAL     + + GP++ +L  D  + K  K+ +   W    
Sbjct: 42  VLEESSSLEDSNHADDQTEDALQTAVEYFQKGPKKASLSKDSVLEKHLKTVENVAWNNGL 101

Query: 64  MGDVLTIVVVAGKTGDFG 81
             + + I++    +G FG
Sbjct: 102 APEAIDILLNVALSGKFG 119


>sp|Q5R7F8|CKAP2_PONAB Cytoskeleton-associated protein 2 OS=Pongo abelii GN=CKAP2 PE=2
           SV=1
          Length = 682

 Score = 30.4 bits (67), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 4   LLKTSIASHLRSHTQEKREDALSRRGYHVEL--GPREKALLADDPVLKRFK-SHKKSVWR 60
           L++  I SH  S+TQ+  +  +SR   +V +  GPREK LL     L   K S  + + R
Sbjct: 251 LVRPPIRSH-HSNTQDTVKQGISRTSANVTIRKGPREKELLQSKTALSSVKTSSSQGIIR 309

Query: 61  LKRMGDVLTIVVVA 74
            K +   +   VVA
Sbjct: 310 NKTLSRCIASEVVA 323


>sp|Q06FP7|RR15_PELHO 30S ribosomal protein S15, chloroplastic OS=Pelargonium hortorum
          GN=rps15-A PE=3 SV=1
          Length = 90

 Score = 29.3 bits (64), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 4/33 (12%)

Query: 9  IASHLRSHTQEKREDALSRRGYHVELGPREKAL 41
          I+SHL+ H    R+D LS+RG H  LG R++ L
Sbjct: 36 ISSHLKLH----RKDYLSQRGLHKILGKRQRLL 64


>sp|O66557|BIOA_AQUAE Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
           OS=Aquifex aeolicus (strain VF5) GN=bioA PE=3 SV=1
          Length = 453

 Score = 29.3 bits (64), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 2   AYLLKTSIASHL-RSHTQEKREDALSRRGYHVELGPREKALLADDPVLKRFKSHKKSVWR 60
           A+L +   A H    HT      A S    ++E+   E+ L    P +K  K   +  W 
Sbjct: 307 AFLGEFGEAKHFYHGHTYTGNNLACSVALANLEVFEEERTLEKLQPKIKLLKERLQEFWE 366

Query: 61  LKRMGDVLTIVVVAG 75
           LK +GDV  +  +AG
Sbjct: 367 LKHVGDVRQLGFMAG 381


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,778,315
Number of Sequences: 539616
Number of extensions: 1134686
Number of successful extensions: 3699
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3689
Number of HSP's gapped (non-prelim): 13
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)