Query 034648
Match_columns 88
No_of_seqs 16 out of 18
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 07:54:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zfd_A SWI5; DNA binding motif 52.7 5.7 0.0002 17.7 1.1 18 2-19 14-31 (32)
2 3pk1_B Apoptosis regulator BAX 51.5 5.1 0.00018 22.9 0.9 16 53-68 8-23 (34)
3 2p61_A Hypothetical protein TM 49.2 6.6 0.00022 27.4 1.4 23 41-63 66-88 (162)
4 1sp2_A SP1F2; zinc finger, tra 48.9 8.5 0.00029 17.0 1.3 18 2-19 13-30 (31)
5 2qup_A BH1478 protein; structu 45.3 7 0.00024 26.5 1.0 23 41-63 56-78 (145)
6 2dii_A TFIIH basal transcripti 45.3 5.3 0.00018 24.9 0.3 24 32-58 14-37 (61)
7 1znf_A 31ST zinc finger from X 40.5 15 0.00053 15.3 1.5 16 2-17 10-25 (27)
8 2ab3_A ZNF29; zinc finger prot 37.5 12 0.00039 15.9 0.8 15 3-17 14-28 (29)
9 4gzn_C ZFP-57, zinc finger pro 36.0 14 0.00048 20.7 1.1 19 2-20 41-59 (60)
10 2kvf_A Zinc finger and BTB dom 35.9 15 0.00053 15.5 1.1 16 2-17 12-27 (28)
11 2qkl_B SPAC19A8.12 protein, SP 35.1 8 0.00027 25.2 -0.0 13 45-57 83-95 (95)
12 2elv_A Zinc finger protein 406 34.9 17 0.00057 16.5 1.2 17 2-18 18-34 (36)
13 2kvg_A Zinc finger and BTB dom 34.9 15 0.0005 15.9 0.9 15 3-17 13-27 (27)
14 2m0d_A Zinc finger and BTB dom 33.9 18 0.00061 15.1 1.1 16 3-18 13-28 (30)
15 1f32_A Major pepsin inhibitor 32.6 37 0.0012 24.5 3.1 34 44-77 31-80 (149)
16 2kvh_A Zinc finger and BTB dom 31.9 15 0.0005 15.6 0.6 16 2-17 12-27 (27)
17 2kfq_A FP1; protein, de novo p 30.3 16 0.00055 16.6 0.6 18 2-19 11-28 (32)
18 1x4p_A Putative splicing facto 30.0 21 0.00071 22.8 1.3 30 36-65 25-62 (66)
19 2elq_A Zinc finger protein 406 29.2 18 0.00063 16.4 0.7 17 2-18 18-34 (36)
20 2elt_A Zinc finger protein 406 27.9 14 0.00048 16.6 0.2 17 2-18 18-34 (36)
21 2ent_A Krueppel-like factor 15 27.7 27 0.00091 16.8 1.2 18 2-19 23-40 (48)
22 2lvu_A Zinc finger and BTB dom 33.6 13 0.00044 15.7 0.0 14 3-16 12-25 (26)
23 2elx_A Zinc finger protein 406 26.4 22 0.00076 15.7 0.7 18 2-19 16-33 (35)
24 1rik_A E6APC1 peptide; E6-bind 25.9 18 0.00063 15.2 0.4 16 3-18 12-27 (29)
25 1r6j_A Syntenin 1; PDZ, membra 25.7 58 0.002 19.6 2.8 23 52-74 58-80 (82)
26 1ard_A Yeast transcription fac 25.6 17 0.00057 15.3 0.2 17 2-18 11-27 (29)
27 2eln_A Zinc finger protein 406 24.5 16 0.00054 19.0 -0.0 17 2-18 20-36 (38)
28 3g16_A Uncharacterized protein 24.4 20 0.00068 24.3 0.5 12 25-36 142-153 (156)
29 3h3e_A Uncharacterized protein 24.1 27 0.00091 25.2 1.1 8 70-77 174-181 (267)
30 2eq0_A Zinc finger protein 347 23.9 34 0.0012 16.4 1.2 18 2-19 21-38 (46)
31 2eos_A B-cell lymphoma 6 prote 23.8 36 0.0012 15.9 1.3 18 2-19 20-37 (42)
32 1i27_A Transcription factor II 23.7 16 0.00054 23.5 -0.1 16 47-62 29-47 (73)
33 1njq_A Superman protein; zinc- 23.6 30 0.001 16.0 1.0 17 3-19 16-32 (39)
34 2ept_A Zinc finger protein 32; 23.5 39 0.0013 15.7 1.4 18 2-19 19-36 (41)
35 2el4_A Zinc finger protein 268 23.4 38 0.0013 16.1 1.3 18 2-19 21-38 (46)
36 2elo_A Zinc finger protein 406 23.3 19 0.00064 16.4 0.1 18 2-19 18-35 (37)
37 2lvt_A Zinc finger and BTB dom 28.8 17 0.0006 15.5 0.0 16 3-18 12-27 (29)
38 2en8_A Zinc finger protein 224 23.0 36 0.0012 16.2 1.2 18 2-19 21-38 (46)
39 2ytb_A Zinc finger protein 32; 22.8 39 0.0013 15.6 1.3 18 2-19 20-37 (42)
40 1srk_A Zinc finger protein ZFP 22.6 36 0.0012 15.1 1.1 18 2-19 16-33 (35)
41 2ytn_A Zinc finger protein 347 22.4 44 0.0015 15.9 1.5 18 2-19 21-38 (46)
42 3iez_A RAS GTPase-activating-l 22.3 19 0.00066 24.1 0.1 22 44-65 12-33 (114)
43 2el5_A Zinc finger protein 268 22.2 36 0.0012 15.8 1.1 18 2-19 19-36 (42)
44 2yts_A Zinc finger protein 484 22.1 41 0.0014 15.9 1.3 18 2-19 21-38 (46)
45 1rim_A E6APC2 peptide; E6-bind 22.1 20 0.00069 16.4 0.1 18 2-19 11-28 (33)
46 2en7_A Zinc finger protein 268 22.1 41 0.0014 15.7 1.3 18 2-19 21-38 (44)
47 2enf_A Zinc finger protein 347 21.8 43 0.0015 16.0 1.4 18 2-19 21-38 (46)
48 2em5_A ZFP-95, zinc finger pro 21.7 39 0.0013 16.2 1.2 18 2-19 21-38 (46)
49 2m0f_A Zinc finger and BTB dom 21.6 12 0.00042 15.7 -0.7 16 3-18 12-27 (29)
50 2ytp_A Zinc finger protein 484 21.5 39 0.0013 16.2 1.2 18 2-19 21-38 (46)
51 2eop_A Zinc finger protein 268 21.4 45 0.0015 15.8 1.4 18 2-19 21-38 (46)
52 2eme_A Zinc finger protein 473 21.1 39 0.0013 16.0 1.1 18 2-19 21-38 (46)
53 2em9_A Zinc finger protein 224 21.0 41 0.0014 16.0 1.2 18 2-19 21-38 (46)
54 2emb_A Zinc finger protein 473 21.0 41 0.0014 15.9 1.2 18 2-19 21-38 (44)
55 1bbo_A Human enhancer-binding 20.9 40 0.0014 16.6 1.1 13 6-18 42-54 (57)
56 1paa_A Yeast transcription fac 20.9 47 0.0016 13.9 1.3 17 2-18 11-28 (30)
57 3a1j_B HHUS1, checkpoint prote 20.8 72 0.0025 22.7 2.9 24 46-72 162-185 (281)
58 2m0e_A Zinc finger and BTB dom 20.8 13 0.00046 15.5 -0.7 15 3-17 12-26 (29)
59 2ytr_A Zinc finger protein 347 20.7 45 0.0015 15.8 1.3 18 2-19 21-38 (46)
60 2yte_A Zinc finger protein 473 20.6 37 0.0013 15.7 0.9 18 2-19 19-36 (42)
61 2eod_A TNF receptor-associated 20.6 30 0.001 18.2 0.6 18 2-19 46-63 (66)
62 2emg_A Zinc finger protein 484 20.5 47 0.0016 15.8 1.3 18 2-19 21-38 (46)
63 2eon_A ZFP-95, zinc finger pro 20.5 48 0.0016 15.9 1.4 18 2-19 21-38 (46)
64 3r8n_U 30S ribosomal protein S 20.4 22 0.00076 20.8 0.1 10 44-53 9-18 (51)
65 2ytq_A Zinc finger protein 268 20.3 49 0.0017 15.8 1.4 18 2-19 21-38 (46)
66 2epz_A Zinc finger protein 28 20.2 47 0.0016 15.8 1.3 18 2-19 21-38 (46)
67 2ep0_A Zinc finger protein 28 20.2 44 0.0015 15.9 1.2 18 2-19 21-38 (46)
68 1va1_A Transcription factor SP 20.2 16 0.00053 17.1 -0.5 17 2-18 19-35 (37)
69 2ytf_A Zinc finger protein 268 20.1 43 0.0015 15.9 1.1 18 2-19 21-38 (46)
No 1
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=52.68 E-value=5.7 Score=17.69 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=13.5
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|.-++++..|+|+|+..
T Consensus 14 ~f~~~~~L~~H~~~H~~~ 31 (32)
T 1zfd_A 14 AFVRNHDLIRHKKSHQEK 31 (32)
T ss_dssp CBSSSHHHHHHHGGGTCC
T ss_pred ccCCHHHHHHHHHHccCC
Confidence 455668999999988643
No 2
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=51.53 E-value=5.1 Score=22.95 Aligned_cols=16 Identities=56% Similarity=0.553 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHhcCee
Q 034648 53 SHKKSVWRLKRMGDVL 68 (88)
Q Consensus 53 S~K~sv~~l~r~gdvL 68 (88)
++|+-+.+|.+|||-|
T Consensus 8 ~~K~l~~cL~~IgDEl 23 (34)
T 3pk1_B 8 STKKLSECLKRIGDEL 23 (34)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5788899999999854
No 3
>2p61_A Hypothetical protein TM_1646; structural genomics, unknown function, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima MSB8} SCOP: a.24.29.1
Probab=49.18 E-value=6.6 Score=27.40 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.3
Q ss_pred ccccchhhhhhhhhhHHHHHHHH
Q 034648 41 LLADDPVLKRFKSHKKSVWRLKR 63 (88)
Q Consensus 41 LL~eD~aLKrFKS~K~sv~~l~r 63 (88)
-|++.|.++.|+.||+.|++.-+
T Consensus 66 rL~~~~t~~~l~~YK~lVK~FL~ 88 (162)
T 2p61_A 66 ELVRSPTPSNLKRYKNAIKEFLK 88 (162)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999998654
No 4
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=48.90 E-value=8.5 Score=17.02 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=13.4
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|--+++|..|.|.|+..
T Consensus 13 ~f~~~~~L~~H~~~H~~~ 30 (31)
T 1sp2_A 13 RFTRSDELQRHKRTHTGE 30 (31)
T ss_dssp BCSSHHHHHHHHTTTSCC
T ss_pred ccCCHhHHHHHHHHhcCC
Confidence 455568999999988653
No 5
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=45.35 E-value=7 Score=26.55 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.0
Q ss_pred ccccchhhhhhhhhhHHHHHHHH
Q 034648 41 LLADDPVLKRFKSHKKSVWRLKR 63 (88)
Q Consensus 41 LL~eD~aLKrFKS~K~sv~~l~r 63 (88)
-|++.|.++.|+.||+.|++.-+
T Consensus 56 rL~~~~t~~~l~~YK~lVk~Fl~ 78 (145)
T 2qup_A 56 LLSETRTIEELRKYKELVKEFVG 78 (145)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH
Confidence 47889999999999999998643
No 6
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=45.31 E-value=5.3 Score=24.93 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=17.4
Q ss_pred cccCcccccccccchhhhhhhhhhHHH
Q 034648 32 VELGPREKALLADDPVLKRFKSHKKSV 58 (88)
Q Consensus 32 vE~gaReKALL~eD~aLKrFKS~K~sv 58 (88)
-|+-.| ++||+|||.|+ +=||.-|
T Consensus 14 ~ELe~k-~rlL~eN~~L~--qLyk~LV 37 (61)
T 2dii_A 14 KELEEK-NRMLQEDPVLF--QLYKDLV 37 (61)
T ss_dssp HHHHHH-HHHHHHCHHHH--HHHHHHH
T ss_pred HhHHHH-HHHHHhCHHHH--HHHHHHH
Confidence 444433 35889999998 7888775
No 7
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=40.55 E-value=15 Score=15.30 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=11.6
Q ss_pred chhhhhhhhhhhccCC
Q 034648 2 AYLLKTSIASHLRSHT 17 (88)
Q Consensus 2 afll~ssi~S~lRS~s 17 (88)
.|--++++..|.|.|+
T Consensus 10 ~f~~~~~l~~H~~~h~ 25 (27)
T 1znf_A 10 SFVEKSALSRHQRVHK 25 (27)
T ss_dssp BCSSHHHHHHHGGGTC
T ss_pred cCCCHHHHHHHHHHcC
Confidence 3445688889988875
No 8
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=37.49 E-value=12 Score=15.85 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=11.0
Q ss_pred hhhhhhhhhhhccCC
Q 034648 3 YLLKTSIASHLRSHT 17 (88)
Q Consensus 3 fll~ssi~S~lRS~s 17 (88)
|--++++..|.|.|+
T Consensus 14 f~~~~~l~~H~~~H~ 28 (29)
T 2ab3_A 14 FNDRRKLNRHKKIHT 28 (29)
T ss_dssp ESSHHHHHHHHGGGT
T ss_pred cCCHHHHHHHHHHhC
Confidence 445588888988764
No 9
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=35.97 E-value=14 Score=20.74 Aligned_cols=19 Identities=16% Similarity=0.426 Sum_probs=12.2
Q ss_pred chhhhhhhhhhhccCCccc
Q 034648 2 AYLLKTSIASHLRSHTQEK 20 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~~ 20 (88)
+|-.++.|..|+|.|+.+|
T Consensus 41 ~F~~~~~L~~H~~~Htgep 59 (60)
T 4gzn_C 41 CFRDQSEVNRHLKVHQNKP 59 (60)
T ss_dssp EESSHHHHHHHGGGGSCC-
T ss_pred CcCCHHHHHHHhCccCCCC
Confidence 4555677777777776653
No 10
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=35.86 E-value=15 Score=15.53 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=11.3
Q ss_pred chhhhhhhhhhhccCC
Q 034648 2 AYLLKTSIASHLRSHT 17 (88)
Q Consensus 2 afll~ssi~S~lRS~s 17 (88)
+|--++.+..|.|.|.
T Consensus 12 ~f~~~~~l~~H~~~h~ 27 (28)
T 2kvf_A 12 RFSLKHQMETHYRVHT 27 (28)
T ss_dssp EESCHHHHHHHHTTSC
T ss_pred ccCCHHHHHHHHHhcC
Confidence 3445588888988764
No 11
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=35.06 E-value=8 Score=25.24 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=7.8
Q ss_pred chhhhhhhhhhHH
Q 034648 45 DPVLKRFKSHKKS 57 (88)
Q Consensus 45 D~aLKrFKS~K~s 57 (88)
|.+++.|++||+.
T Consensus 83 ~~~~~~F~~YK~~ 95 (95)
T 2qkl_B 83 EEAFDDFLRYKTR 95 (95)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHhccC
Confidence 6689999999963
No 12
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.88 E-value=17 Score=16.54 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=12.8
Q ss_pred chhhhhhhhhhhccCCc
Q 034648 2 AYLLKTSIASHLRSHTQ 18 (88)
Q Consensus 2 afll~ssi~S~lRS~sq 18 (88)
.|.-++.|..|.|.|+.
T Consensus 18 ~f~~~~~l~~H~~~H~~ 34 (36)
T 2elv_A 18 KFKNELDRDRHMLVHGD 34 (36)
T ss_dssp EESSHHHHHHHHTTTST
T ss_pred ccCCHHHHHHHHHHhcC
Confidence 45556889999998864
No 13
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=34.86 E-value=15 Score=15.90 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=10.8
Q ss_pred hhhhhhhhhhhccCC
Q 034648 3 YLLKTSIASHLRSHT 17 (88)
Q Consensus 3 fll~ssi~S~lRS~s 17 (88)
|--++++..|.|.|+
T Consensus 13 f~~~~~l~~H~~~H~ 27 (27)
T 2kvg_A 13 CPSLASMQAHMRGHS 27 (27)
T ss_dssp ESCHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHhcC
Confidence 445588888988763
No 14
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.85 E-value=18 Score=15.14 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=11.7
Q ss_pred hhhhhhhhhhhccCCc
Q 034648 3 YLLKTSIASHLRSHTQ 18 (88)
Q Consensus 3 fll~ssi~S~lRS~sq 18 (88)
|--.+++..|.+.|+.
T Consensus 13 f~~~~~l~~H~~~h~~ 28 (30)
T 2m0d_A 13 FSDPTSKMRHLETHDT 28 (30)
T ss_dssp ESCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHhcc
Confidence 4455788899888764
No 15
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=32.57 E-value=37 Score=24.54 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=28.0
Q ss_pred cchhhhhhhhhhHHHHHHHHh----------------cCeeEEeeeeccc
Q 034648 44 DDPVLKRFKSHKKSVWRLKRM----------------GDVLTIVVVAGKT 77 (88)
Q Consensus 44 eD~aLKrFKS~K~sv~~l~r~----------------gdvLT~vVvagC~ 77 (88)
+|-.+.-||||++-+..-+.+ |+--|-.++-||-
T Consensus 31 ~~dei~~f~~y~~~l~~~~~~~~~fsp~~pk~PsFC~~~Dttqy~FdGCv 80 (149)
T 1f32_A 31 EGDDIQVGKEFAARVEDCTNVKHDMAPTCTKPPPFCGPQDMKMFNFVGCS 80 (149)
T ss_dssp CGGGHHHHHHHHHHHHHHHHTTCCCSHHHHCCCGGGCCTTCEEEEETTEE
T ss_pred cchhhHHHHHHHHHHHHHHhhHhhcCCCCCCCCCccCcccceEEEEeeeE
Confidence 455788999999999888887 5667888888885
No 16
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.92 E-value=15 Score=15.62 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=10.8
Q ss_pred chhhhhhhhhhhccCC
Q 034648 2 AYLLKTSIASHLRSHT 17 (88)
Q Consensus 2 afll~ssi~S~lRS~s 17 (88)
+|--++.+..|.|.|+
T Consensus 12 ~f~~~~~l~~H~~~H~ 27 (27)
T 2kvh_A 12 RSRDFSAMTKHLRTHG 27 (27)
T ss_dssp EESSHHHHHHHHHHCC
T ss_pred hhCCHHHHHHHHHHcc
Confidence 3445578888887763
No 17
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=30.30 E-value=16 Score=16.56 Aligned_cols=18 Identities=6% Similarity=0.307 Sum_probs=12.8
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|--++++..|.|.|+..
T Consensus 11 ~f~~~~~L~~H~~~H~~~ 28 (32)
T 2kfq_A 11 RFMRSDALSKHIKTAFIV 28 (32)
T ss_dssp THHHHHTTSSSTTSSSSS
T ss_pred ccCCHHHHHHHHHHHccC
Confidence 355567888888887654
No 18
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=29.97 E-value=21 Score=22.79 Aligned_cols=30 Identities=33% Similarity=0.627 Sum_probs=24.9
Q ss_pred cccccccccchhh--------hhhhhhhHHHHHHHHhc
Q 034648 36 PREKALLADDPVL--------KRFKSHKKSVWRLKRMG 65 (88)
Q Consensus 36 aReKALL~eD~aL--------KrFKS~K~sv~~l~r~g 65 (88)
+.|.|+..||||. +-||=||..+-.+++..
T Consensus 25 ~~~~a~~k~nPaf~FL~D~~S~eykYYr~KlaE~r~~k 62 (66)
T 1x4p_A 25 PKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEMQRSG 62 (66)
T ss_dssp HHHHHHHHHSGGGCTTTCCSSSHHHHHHHHHHHHHHSS
T ss_pred HHHHHHcccCCceeeeeCCCcHHHHHHHHHHHHHHhhc
Confidence 5678889999986 47999999999998763
No 19
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.15 E-value=18 Score=16.39 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=12.5
Q ss_pred chhhhhhhhhhhccCCc
Q 034648 2 AYLLKTSIASHLRSHTQ 18 (88)
Q Consensus 2 afll~ssi~S~lRS~sq 18 (88)
.|--++.+..|.|.|+.
T Consensus 18 ~f~~~~~l~~H~~~H~~ 34 (36)
T 2elq_A 18 ATRSKSNLKAHMNRHST 34 (36)
T ss_dssp EESCHHHHHHHHHHSST
T ss_pred hhCCHHHHHHHHHHhcc
Confidence 35556888999988764
No 20
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.90 E-value=14 Score=16.63 Aligned_cols=17 Identities=41% Similarity=0.600 Sum_probs=12.3
Q ss_pred chhhhhhhhhhhccCCc
Q 034648 2 AYLLKTSIASHLRSHTQ 18 (88)
Q Consensus 2 afll~ssi~S~lRS~sq 18 (88)
+|-.++.+..|.|.|..
T Consensus 18 ~f~~~~~l~~H~~~H~~ 34 (36)
T 2elt_A 18 ASAIKANLNVHLRKHTG 34 (36)
T ss_dssp EESSHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHccC
Confidence 45556888889887754
No 21
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.69 E-value=27 Score=16.76 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=13.6
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|.-++.|..|++.|+..
T Consensus 23 ~f~~~~~L~~H~~~H~~~ 40 (48)
T 2ent_A 23 RFSRSDELSRHRRSHSGV 40 (48)
T ss_dssp EESSHHHHHHHHTTSCCC
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 355568899999988754
No 22
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=33.56 E-value=13 Score=15.69 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=8.9
Q ss_pred hhhhhhhhhhhccC
Q 034648 3 YLLKTSIASHLRSH 16 (88)
Q Consensus 3 fll~ssi~S~lRS~ 16 (88)
|--++.+..|.|.|
T Consensus 12 f~~~~~l~~H~~~H 25 (26)
T 2lvu_A 12 FVQSSQLANHIRHH 25 (26)
Confidence 44456777777765
No 23
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.39 E-value=22 Score=15.72 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=13.0
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|--++.|..|.+.|...
T Consensus 16 ~f~~~~~L~~H~~~h~~~ 33 (35)
T 2elx_A 16 KFVSSIRLRSHIREVHGA 33 (35)
T ss_dssp EESSHHHHHHHHHHTSCT
T ss_pred hhCCHHHHHHHHHHHcCC
Confidence 355568899999887643
No 24
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=25.93 E-value=18 Score=15.22 Aligned_cols=16 Identities=13% Similarity=0.376 Sum_probs=11.1
Q ss_pred hhhhhhhhhhhccCCc
Q 034648 3 YLLKTSIASHLRSHTQ 18 (88)
Q Consensus 3 fll~ssi~S~lRS~sq 18 (88)
|--.+.+..|.+.|..
T Consensus 12 f~~~~~l~~H~~~H~~ 27 (29)
T 1rik_A 12 FMRSDHLTLHILLHEN 27 (29)
T ss_dssp ESCSHHHHHHHTGGGS
T ss_pred hCCHHHHHHHHHHhcC
Confidence 4445788888887753
No 25
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=25.73 E-value=58 Score=19.57 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHhcCeeEEeeee
Q 034648 52 KSHKKSVWRLKRMGDVLTIVVVA 74 (88)
Q Consensus 52 KS~K~sv~~l~r~gdvLT~vVva 74 (88)
++|..-+..++..|+.+|+.|+-
T Consensus 58 ~~~~evv~llr~~g~~V~L~v~p 80 (82)
T 1r6j_A 58 LKDSQIADILSTSGTVVTITIMP 80 (82)
T ss_dssp CCHHHHHHHHHHSCSEEEEEEEE
T ss_pred CCHHHHHHHHhcCCCEEEEEEEe
Confidence 57999999999999999998863
No 26
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.57 E-value=17 Score=15.30 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=11.7
Q ss_pred chhhhhhhhhhhccCCc
Q 034648 2 AYLLKTSIASHLRSHTQ 18 (88)
Q Consensus 2 afll~ssi~S~lRS~sq 18 (88)
+|--++.+..|.++|+.
T Consensus 11 ~f~~~~~l~~H~~~h~~ 27 (29)
T 1ard_A 11 AFARQEHLKRHYRSHTN 27 (29)
T ss_dssp BCSSHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHHhcC
Confidence 34455788888887754
No 27
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.49 E-value=16 Score=18.96 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=13.6
Q ss_pred chhhhhhhhhhhccCCc
Q 034648 2 AYLLKTSIASHLRSHTQ 18 (88)
Q Consensus 2 afll~ssi~S~lRS~sq 18 (88)
+|.-++.|..|+|.|+.
T Consensus 20 ~F~~~~~L~~H~r~Htg 36 (38)
T 2eln_A 20 STPDKYKLQAHLKVHTA 36 (38)
T ss_dssp EESCHHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHHhcCC
Confidence 56677999999998864
No 28
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=24.38 E-value=20 Score=24.26 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.8
Q ss_pred ccccccccccCc
Q 034648 25 LSRRGYHVELGP 36 (88)
Q Consensus 25 ~~rRgfHvE~ga 36 (88)
-.-||||++|+-
T Consensus 142 ~~~~~~~~~~~~ 153 (156)
T 3g16_A 142 YAGRGYRVTSPR 153 (156)
T ss_dssp TTTTTCCCSCTT
T ss_pred ccCCccccCCCC
Confidence 568999999863
No 29
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=24.06 E-value=27 Score=25.22 Aligned_cols=8 Identities=38% Similarity=0.775 Sum_probs=7.1
Q ss_pred Eeeeeccc
Q 034648 70 IVVVAGKT 77 (88)
Q Consensus 70 ~vVvagC~ 77 (88)
+||++|||
T Consensus 174 lvvitGCs 181 (267)
T 3h3e_A 174 LVVITGCS 181 (267)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 58999998
No 30
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.91 E-value=34 Score=16.35 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=13.6
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|++.|...
T Consensus 21 ~F~~~~~L~~H~~~H~~~ 38 (46)
T 2eq0_A 21 VFRRNSHLARHQLIHTGE 38 (46)
T ss_dssp EESSHHHHHHHHTTTCCC
T ss_pred hhCCHHHHHHHHHHcCCC
Confidence 455568899999988754
No 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.77 E-value=36 Score=15.93 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=13.4
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|.+.|...
T Consensus 20 ~f~~~~~L~~H~~~H~~~ 37 (42)
T 2eos_A 20 RFRHLQTLKSHLRIHTGS 37 (42)
T ss_dssp CBSSHHHHHHHTTTTSCC
T ss_pred ccCCHHHHHHHHHhcCCC
Confidence 355568899999988654
No 32
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=23.69 E-value=16 Score=23.54 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=10.6
Q ss_pred hhhhhhhhh---HHHHHHH
Q 034648 47 VLKRFKSHK---KSVWRLK 62 (88)
Q Consensus 47 aLKrFKS~K---~sv~~l~ 62 (88)
-|++||+++ ++-.-+.
T Consensus 29 Ll~KFK~r~~~~~~~e~v~ 47 (73)
T 1i27_A 29 LLKKFQTKKTGLSSEQTVN 47 (73)
T ss_dssp HHHTSCHHHHCCCHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHH
Confidence 378999998 5444433
No 33
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=23.59 E-value=30 Score=16.02 Aligned_cols=17 Identities=12% Similarity=0.458 Sum_probs=13.2
Q ss_pred hhhhhhhhhhhccCCcc
Q 034648 3 YLLKTSIASHLRSHTQE 19 (88)
Q Consensus 3 fll~ssi~S~lRS~sq~ 19 (88)
|--++.|..|.++|...
T Consensus 16 f~~~~~L~~H~~~H~~~ 32 (39)
T 1njq_A 16 FRSAQALGGHMNVHRRD 32 (39)
T ss_dssp ESSHHHHHHHHHTTCCS
T ss_pred cCCHHHHHHHHHHcCCC
Confidence 44568899999998765
No 34
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.49 E-value=39 Score=15.72 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=13.4
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|.+.|...
T Consensus 19 ~f~~~~~L~~H~~~H~~~ 36 (41)
T 2ept_A 19 SFRQKGSLTLHERIHTGS 36 (41)
T ss_dssp EESSHHHHHHHGGGCCCC
T ss_pred CcCCHHHHHHHHHHhCCC
Confidence 355568899999988754
No 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=23.37 E-value=38 Score=16.08 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=13.5
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|+++|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2el4_A 21 TFSLKSQLIVHQRSHTGV 38 (46)
T ss_dssp EESSHHHHHHHGGGSSSC
T ss_pred hhCCHHHHHHHHHHhCCC
Confidence 355568899999988754
No 36
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.28 E-value=19 Score=16.37 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=13.0
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|.-+++|..|.+.|...
T Consensus 18 ~f~~~~~l~~H~~~h~~~ 35 (37)
T 2elo_A 18 SFSEDRLIKSHIKTNHPE 35 (37)
T ss_dssp ECSSHHHHHHHHHHHCSS
T ss_pred ccCCHHHHHHHHHHHcCC
Confidence 355568899999887654
No 37
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.80 E-value=17 Score=15.47 Aligned_cols=16 Identities=31% Similarity=0.600 Sum_probs=10.3
Q ss_pred hhhhhhhhhhhccCCc
Q 034648 3 YLLKTSIASHLRSHTQ 18 (88)
Q Consensus 3 fll~ssi~S~lRS~sq 18 (88)
|--++++..|.+.|..
T Consensus 12 f~~~~~l~~H~~~H~~ 27 (29)
T 2lvt_A 12 FTQASSLIAHVRQHTG 27 (29)
Confidence 4445777788777653
No 38
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.02 E-value=36 Score=16.16 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=13.4
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|-..+.|..|.+.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2en8_A 21 NFCYISALRIHQRVHMGE 38 (46)
T ss_dssp EESSHHHHHHHHTTTCCS
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 355568899999988754
No 39
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.84 E-value=39 Score=15.63 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=12.9
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|--++.|..|.+.|...
T Consensus 20 ~f~~~~~L~~H~~~H~~~ 37 (42)
T 2ytb_A 20 AFSQKGSLIVHIRVHTGS 37 (42)
T ss_dssp CBSSHHHHHTTGGGTSCC
T ss_pred hhCCHHHHHHHHHHhCCC
Confidence 355568888999888654
No 40
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=22.56 E-value=36 Score=15.13 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=13.0
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|.-++.|..|+|.|...
T Consensus 16 ~f~~~~~l~~H~~~H~~~ 33 (35)
T 1srk_A 16 AFTTKANCARHLKVHTDT 33 (35)
T ss_dssp EESSHHHHHHHHGGGTSC
T ss_pred ccCCHHHHHHHHHHcCCC
Confidence 355568899999887654
No 41
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.43 E-value=44 Score=15.90 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=13.5
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|.+.|...
T Consensus 21 ~F~~~~~L~~H~~~H~~~ 38 (46)
T 2ytn_A 21 VFTQNSHLARHRGIHTGE 38 (46)
T ss_dssp BCSSHHHHHHHGGGTSCC
T ss_pred eeCCHHHHHHHhhhcCCC
Confidence 455568899999988754
No 42
>3iez_A RAS GTPase-activating-like protein iqgap2; structural genomics consortium, SGC, alternative splicing, calmodulin-binding, phosphoprotein; 1.50A {Homo sapiens} PDB: 4eza_A
Probab=22.26 E-value=19 Score=24.10 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=13.5
Q ss_pred cchhhhhhhhhhHHHHHHHHhc
Q 034648 44 DDPVLKRFKSHKKSVWRLKRMG 65 (88)
Q Consensus 44 eD~aLKrFKS~K~sv~~l~r~g 65 (88)
|+--.|.|+|||=|.++|.+-|
T Consensus 12 ~~~~~~k~~syKYSA~kL~eKG 33 (114)
T 3iez_A 12 ENLYFQGAKPVKYTAAKLHEKG 33 (114)
T ss_dssp --------CCEEEEHHHHHHHT
T ss_pred ceeEEeecCceeEcHHHHhhCC
Confidence 4556789999999999999988
No 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=22.19 E-value=36 Score=15.84 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=13.4
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|--++.|..|.+.|...
T Consensus 19 ~f~~~~~L~~H~~~H~~~ 36 (42)
T 2el5_A 19 AFNRKDQLISHQRTHAGE 36 (42)
T ss_dssp EESSHHHHHHHHGGGCCC
T ss_pred hhCCHHHHHHHHHhcCCC
Confidence 355568899999988754
No 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.09 E-value=41 Score=15.94 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=13.4
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|--++.|..|++.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2yts_A 21 SFIQKSHLNRHRRIHTGE 38 (46)
T ss_dssp EESSHHHHHHHGGGTSSC
T ss_pred hhCChHHHHHHHHhcCCC
Confidence 355568899999988654
No 45
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=22.09 E-value=20 Score=16.40 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=13.5
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|--+++|..|++.|+..
T Consensus 11 ~F~~~~~L~~H~~~H~~~ 28 (33)
T 1rim_A 11 RFMRSDHLSKHITLHELL 28 (33)
T ss_dssp CCSSHHHHHHHHHHHTTT
T ss_pred hhCCHHHHHHHHHHhCCC
Confidence 355568899999988765
No 46
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.07 E-value=41 Score=15.71 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=13.4
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|++.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (44)
T 2en7_A 21 AFRSKSYLIIHTRTHTGE 38 (44)
T ss_dssp CCSSHHHHHHHHTTTCCS
T ss_pred ccCCHHHHHHHhhhcCCC
Confidence 355568899999988654
No 47
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.82 E-value=43 Score=15.95 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=13.6
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|++.|...
T Consensus 21 ~F~~~~~L~~H~~~H~~~ 38 (46)
T 2enf_A 21 VFTQNSHLVRHRGIHTGE 38 (46)
T ss_dssp BCSSHHHHHHHHTTTTTS
T ss_pred ccCCHHHHHHHHHhhCCC
Confidence 455668899999988754
No 48
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.70 E-value=39 Score=16.21 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=13.4
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--+++|..|++.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2em5_A 21 GFTLKSHLNQHQRIHTGE 38 (46)
T ss_dssp EESSHHHHHHHHTTTSCS
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 355568899999988654
No 49
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.62 E-value=12 Score=15.65 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=10.7
Q ss_pred hhhhhhhhhhhccCCc
Q 034648 3 YLLKTSIASHLRSHTQ 18 (88)
Q Consensus 3 fll~ssi~S~lRS~sq 18 (88)
|--.+++..|.|.|+.
T Consensus 12 f~~~~~l~~H~~~H~~ 27 (29)
T 2m0f_A 12 FTTSGNLKRHLRIHSG 27 (29)
T ss_dssp ESCHHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHhcC
Confidence 4445778888887643
No 50
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.50 E-value=39 Score=16.19 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=13.7
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--+++|..|++.|...
T Consensus 21 ~F~~~~~L~~H~~~H~~~ 38 (46)
T 2ytp_A 21 AFARKSTLIMHQRIHTGE 38 (46)
T ss_dssp EESSHHHHHHHHTTTSCC
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 455668999999988754
No 51
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.37 E-value=45 Score=15.81 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=13.5
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|++.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2eop_A 21 SFSFNSQLIVHQRIHTGE 38 (46)
T ss_dssp BCSSHHHHHHHHTTTTTS
T ss_pred hhCCHHHHHHHHHHcCCC
Confidence 355568899999988754
No 52
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.13 E-value=39 Score=16.05 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=13.2
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|++.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2eme_A 21 AFGLSAELVRHQRIHTGE 38 (46)
T ss_dssp EESSHHHHHHHHGGGCCC
T ss_pred hhCCHHHHHHHHHhcCCC
Confidence 355568899999988654
No 53
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=21.01 E-value=41 Score=15.96 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=13.3
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|-.++.|..|.+.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2em9_A 21 SFRWASCLLKHQRVHSGE 38 (46)
T ss_dssp EESSHHHHHHHGGGGTSC
T ss_pred ccCChHHHHHHHHHhCCC
Confidence 355568899999888654
No 54
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.99 E-value=41 Score=15.87 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=13.2
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|-.++.|..|.+.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (44)
T 2emb_A 21 TFNLRKHLIQHQKTHAAK 38 (44)
T ss_dssp EESCHHHHHHHGGGGCCC
T ss_pred ccCCHHHHHHHHHHcCCC
Confidence 355568899999988654
No 55
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=20.92 E-value=40 Score=16.60 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=6.9
Q ss_pred hhhhhhhhccCCc
Q 034648 6 KTSIASHLRSHTQ 18 (88)
Q Consensus 6 ~ssi~S~lRS~sq 18 (88)
++.+..|+++|..
T Consensus 42 ~~~l~~H~~~h~~ 54 (57)
T 1bbo_A 42 KGNLTKHMKSKAH 54 (57)
T ss_dssp HHHHHHHHHSSSS
T ss_pred HHHHHHHHHHhcc
Confidence 3555556555543
No 56
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.86 E-value=47 Score=13.89 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=11.2
Q ss_pred chhhhhhhhhh-hccCCc
Q 034648 2 AYLLKTSIASH-LRSHTQ 18 (88)
Q Consensus 2 afll~ssi~S~-lRS~sq 18 (88)
+|--++.+..| .+.|+.
T Consensus 11 ~f~~~~~l~~H~~~~H~~ 28 (30)
T 1paa_A 11 AFTRRDLLIRHAQKIHSG 28 (30)
T ss_dssp BCSSSHHHHHHHTTTSCC
T ss_pred ccCChHHHHHHHHHHccC
Confidence 34455788888 677654
No 57
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=20.79 E-value=72 Score=22.68 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=18.3
Q ss_pred hhhhhhhhhhHHHHHHHHhcCeeEEee
Q 034648 46 PVLKRFKSHKKSVWRLKRMGDVLTIVV 72 (88)
Q Consensus 46 ~aLKrFKS~K~sv~~l~r~gdvLT~vV 72 (88)
|+++. .++-+++++.+||.++|-+
T Consensus 162 Psl~~---~~~iv~~lk~i~d~v~i~a 185 (281)
T 3a1j_B 162 PVLKT---MKSVVEKMKNISNHLVIEA 185 (281)
T ss_dssp CCHHH---HHHHHHHHHTTCSEEEEEE
T ss_pred CCHHH---HHHHHHHHhccCCeEEEEE
Confidence 45555 4568999999999887765
No 58
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.77 E-value=13 Score=15.45 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=10.1
Q ss_pred hhhhhhhhhhhccCC
Q 034648 3 YLLKTSIASHLRSHT 17 (88)
Q Consensus 3 fll~ssi~S~lRS~s 17 (88)
|-..+.+..|.+.|.
T Consensus 12 f~~~~~l~~H~~~h~ 26 (29)
T 2m0e_A 12 FNQVGNLKAHLKIHI 26 (29)
T ss_dssp CCTTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhc
Confidence 445577888877654
No 59
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.69 E-value=45 Score=15.82 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=13.4
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--+++|..|++.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2ytr_A 21 AFSQTSKLARHQRIHTGE 38 (46)
T ss_dssp CCSSHHHHHHHHTTTTTC
T ss_pred ccCCHHHHHHHHHhcCCC
Confidence 355568899999988754
No 60
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.64 E-value=37 Score=15.74 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=13.4
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|.+.|+..
T Consensus 19 ~f~~~~~L~~H~~~H~~~ 36 (42)
T 2yte_A 19 TFSDNNRLVQHQKMHTVK 36 (42)
T ss_dssp BCSSHHHHHHHHHHTSCC
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 455568899999988654
No 61
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.57 E-value=30 Score=18.15 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=12.3
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|..++.|..|+|.|-+.
T Consensus 46 ~f~~~~~L~~H~~~hc~~ 63 (66)
T 2eod_A 46 GTVAREDLPGHLKDSCNT 63 (66)
T ss_dssp CEEETTTHHHHHHTTSSS
T ss_pred ccccHHHHHHHHHhhccc
Confidence 355567788888877655
No 62
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.52 E-value=47 Score=15.81 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=13.5
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|++.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2emg_A 21 VFTHKTNLIIHQKIHTGE 38 (46)
T ss_dssp BCSSHHHHHHHHTTTSCC
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 355568899999988754
No 63
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.50 E-value=48 Score=15.94 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=13.5
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|++.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2eon_A 21 AFRVSSHLVQHHSVHSGE 38 (46)
T ss_dssp BCSSHHHHHHHTTTTTSC
T ss_pred ccCcHHHHHHHHHhcCCC
Confidence 455568899999988754
No 64
>3r8n_U 30S ribosomal protein S21; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_U 3fih_U* 3j18_U* 2wwl_U 3oar_U 3oaq_U 3ofb_U 3ofa_U 3ofp_U 3ofx_U 3ofy_U 3ofo_U 3r8o_U 4a2i_U 4gd1_U 4gd2_U
Probab=20.43 E-value=22 Score=20.84 Aligned_cols=10 Identities=50% Similarity=0.663 Sum_probs=7.9
Q ss_pred cchhhhhhhh
Q 034648 44 DDPVLKRFKS 53 (88)
Q Consensus 44 eD~aLKrFKS 53 (88)
-|.||++||-
T Consensus 9 ie~AlrrfkR 18 (51)
T 3r8n_U 9 FDVALRRFKR 18 (51)
T ss_dssp CCCCCCTTGG
T ss_pred HHHHHHHHHH
Confidence 3789999984
No 65
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.28 E-value=49 Score=15.82 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=13.4
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|.+.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2ytq_A 21 AFSSKSYLIIHMRTHSGE 38 (46)
T ss_dssp BCSCHHHHHHHHTTTCCS
T ss_pred hhCChHHHHHHHHHhCCC
Confidence 355568899999988754
No 66
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.24 E-value=47 Score=15.81 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=13.3
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--+++|..|++.|+..
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2epz_A 21 AFSDHIGLNQHRRIHTGE 38 (46)
T ss_dssp CBSSHHHHHHHHTTTTTC
T ss_pred eeCCHHHHHHHHHHhCCC
Confidence 355568899999988654
No 67
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.19 E-value=44 Score=15.93 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=13.4
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|++.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2ep0_A 21 SFRYGSSLTVHQRIHTGE 38 (46)
T ss_dssp EESSHHHHHHHHTTTSSS
T ss_pred ccCChHHHHHHHHHhCCC
Confidence 355568899999988754
No 68
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=20.17 E-value=16 Score=17.08 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=12.0
Q ss_pred chhhhhhhhhhhccCCc
Q 034648 2 AYLLKTSIASHLRSHTQ 18 (88)
Q Consensus 2 afll~ssi~S~lRS~sq 18 (88)
+|--++.|..|.|.|+.
T Consensus 19 ~f~~~~~L~~H~~~H~~ 35 (37)
T 1va1_A 19 VYGKTSHLRAHLRWHTG 35 (37)
T ss_dssp EESCHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHhcCC
Confidence 35556888889887653
No 69
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.13 E-value=43 Score=15.87 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=13.6
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
.|--++.|..|++.|...
T Consensus 21 ~f~~~~~L~~H~~~H~~~ 38 (46)
T 2ytf_A 21 AFNTKSNLIVHQRTHTGE 38 (46)
T ss_dssp EESSHHHHHHHHHTSCSS
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 355568899999988755
Done!