Query 034648
Match_columns 88
No_of_seqs 16 out of 18
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 07:54:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034648.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034648hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fnea1 b.36.1.1 (A:1955-2042) 52.0 5.6 0.00041 22.5 2.7 23 52-74 66-88 (88)
2 d2glia3 g.37.1.1 (A:168-197) F 46.1 3 0.00022 21.0 0.7 17 2-18 13-29 (30)
3 d2p61a1 a.24.29.1 (A:34-152) H 45.9 3.8 0.00028 25.8 1.4 23 41-63 31-53 (119)
4 d1q3oa_ b.36.1.1 (A:) Shank1, 38.9 14 0.001 20.8 3.1 23 52-74 78-100 (104)
5 d1ls1a1 a.24.13.1 (A:1-88) Sig 35.1 5.9 0.00043 23.6 0.9 23 38-60 35-57 (88)
6 d1r6ja_ b.36.1.1 (A:) Syntenin 33.9 17 0.0013 20.2 2.9 23 52-74 58-80 (82)
7 d2adra1 g.37.1.1 (A:102-130) A 33.6 7.5 0.00055 19.0 1.1 18 2-19 11-28 (29)
8 d1sp2a_ g.37.1.1 (A:) Transcri 33.4 9 0.00065 19.0 1.3 18 2-19 13-30 (31)
9 d1x4pa1 a.217.1.1 (A:8-60) Arg 33.4 8.4 0.00062 22.4 1.4 15 34-48 16-30 (53)
10 d2dlka2 g.37.1.1 (A:38-73) Zin 33.1 3.2 0.00023 21.4 -0.5 18 2-19 12-29 (36)
11 d1sp1a_ g.37.1.1 (A:) Transcri 29.9 6.3 0.00046 19.4 0.4 18 2-19 11-28 (29)
12 d1zfda_ g.37.1.1 (A:) SWI5 zin 29.1 9.1 0.00066 19.3 0.9 17 3-19 15-31 (32)
13 d1j8yf1 a.24.13.1 (F:3-86) Sig 29.1 8.6 0.00063 22.6 0.9 23 39-61 32-54 (84)
14 d2cota2 g.37.1.1 (A:7-44) Zinc 28.5 10 0.00075 19.1 1.1 17 2-18 21-37 (38)
15 d2h3la1 b.36.1.1 (A:1310-1412) 24.8 29 0.0021 19.9 2.9 22 52-73 77-98 (103)
16 d1srka_ g.37.1.1 (A:) Zinc fin 24.2 13 0.00092 18.9 0.9 18 2-19 16-33 (35)
17 d1x6ha2 g.37.1.1 (A:8-43) Tran 23.1 12 0.00085 18.8 0.6 18 2-19 17-34 (36)
18 d1x6ea2 g.37.1.1 (A:41-66) Zin 23.0 5.1 0.00037 19.8 -0.8 15 2-16 11-25 (26)
19 d1ubdc3 g.37.1.1 (C:351-380) Y 22.4 5.9 0.00043 19.7 -0.7 17 2-18 13-29 (30)
20 d2fcfa1 b.36.1.1 (A:1148-1243) 22.1 24 0.0018 19.7 2.0 21 52-72 72-92 (96)
21 d1rgra_ b.36.1.1 (A:) Synaptic 21.4 39 0.0029 18.5 2.8 26 47-73 63-88 (93)
22 d1a1ia2 g.37.1.1 (A:132-159) Z 20.9 6 0.00043 19.5 -0.8 16 2-17 12-27 (28)
23 d1wgwa_ a.24.13.1 (A:) Signal 20.8 14 0.001 22.2 0.7 22 39-60 41-62 (99)
No 1
>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.05 E-value=5.6 Score=22.47 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHhcCeeEEeeee
Q 034648 52 KSHKKSVWRLKRMGDVLTIVVVA 74 (88)
Q Consensus 52 KS~K~sv~~l~r~gdvLT~vVva 74 (88)
.+|..-+..++..++.++++||+
T Consensus 66 ~~~~~v~~~l~~~~~~v~L~Vls 88 (88)
T d2fnea1 66 VTHEEAVAILKRTKGTVTLMVLS 88 (88)
T ss_dssp CCHHHHHHHHHHCCSSEEEEEEE
T ss_pred CCHHHHHHHHHcCCCcEEEEEEC
Confidence 47888999999999999999985
No 2
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.14 E-value=3 Score=21.02 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=14.2
Q ss_pred chhhhhhhhhhhccCCc
Q 034648 2 AYLLKTSIASHLRSHTQ 18 (88)
Q Consensus 2 afll~ssi~S~lRS~sq 18 (88)
+|.-++.|..|+|.|+-
T Consensus 13 ~F~~~~~L~~H~r~HtG 29 (30)
T d2glia3 13 SYSRLENLKTHLRSHTG 29 (30)
T ss_dssp CCSSHHHHHHHHHHTTT
T ss_pred eECChhHhhhhcCcCcC
Confidence 57777999999999874
No 3
>d2p61a1 a.24.29.1 (A:34-152) Hypothetical protein TM1646 {Thermotoga maritima [TaxId: 2336]}
Probab=45.91 E-value=3.8 Score=25.82 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.3
Q ss_pred ccccchhhhhhhhhhHHHHHHHH
Q 034648 41 LLADDPVLKRFKSHKKSVWRLKR 63 (88)
Q Consensus 41 LL~eD~aLKrFKS~K~sv~~l~r 63 (88)
-|++.|.+..++.||+.|++.-+
T Consensus 31 ~L~~~~t~~~l~~YK~lIk~fl~ 53 (119)
T d2p61a1 31 ELVRSPTPSNLKRYKNAIKEFLK 53 (119)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHHHH
Confidence 48899999999999999998654
No 4
>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=38.93 E-value=14 Score=20.78 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHhcCeeEEeeee
Q 034648 52 KSHKKSVWRLKRMGDVLTIVVVA 74 (88)
Q Consensus 52 KS~K~sv~~l~r~gdvLT~vVva 74 (88)
.+|..-++.+++.|+.+++.|+.
T Consensus 78 ~~h~evv~~ik~~~~~v~L~V~~ 100 (104)
T d1q3oa_ 78 VGHRQVVNMIRQGGNTLMVKVVM 100 (104)
T ss_dssp CCHHHHHHHHHHTTTEEEEEEEE
T ss_pred CCHHHHHHHHHcCCCeEEEEEEe
Confidence 38899999999999999999875
No 5
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=35.10 E-value=5.9 Score=23.62 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=19.8
Q ss_pred cccccccchhhhhhhhhhHHHHH
Q 034648 38 EKALLADDPVLKRFKSHKKSVWR 60 (88)
Q Consensus 38 eKALL~eD~aLKrFKS~K~sv~~ 60 (88)
..|||+-|++++==|+.-+.|++
T Consensus 35 r~ALLeADV~l~vvk~f~~~ik~ 57 (88)
T d1ls1a1 35 RRALMDADVNLEVARDFVERVRE 57 (88)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHH
Confidence 37999999999988888888875
No 6
>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.85 E-value=17 Score=20.25 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHhcCeeEEeeee
Q 034648 52 KSHKKSVWRLKRMGDVLTIVVVA 74 (88)
Q Consensus 52 KS~K~sv~~l~r~gdvLT~vVva 74 (88)
.+|..-+.-+++.|+.+|+.|+-
T Consensus 58 ~t~~~~~~ll~~~~~~v~l~v~p 80 (82)
T d1r6ja_ 58 LKDSQIADILSTSGTVVTITIMP 80 (82)
T ss_dssp CCHHHHHHHHHHSCSEEEEEEEE
T ss_pred CCHHHHHHHHHcCCCEEEEEEEc
Confidence 47889999999999999999873
No 7
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=33.64 E-value=7.5 Score=19.02 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=14.8
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|-.++.|..|+|+|+..
T Consensus 11 ~F~~~~~L~~H~r~HTgE 28 (29)
T d2adra1 11 AFARQEHLKRHYRSHTNE 28 (29)
T ss_dssp CBSCHHHHHHHHHTTTSS
T ss_pred CCCCchHcccccCcccCC
Confidence 566779999999999854
No 8
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.37 E-value=9 Score=19.03 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=14.7
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|.-++.|..|+|.|+..
T Consensus 13 ~F~~~~~L~~H~r~Htge 30 (31)
T d1sp2a_ 13 RFTRSDELQRHKRTHTGE 30 (31)
T ss_dssp BCSSHHHHHHHHTTTSCC
T ss_pred CcCChhHhhhhcCccccc
Confidence 567779999999999754
No 9
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.36 E-value=8.4 Score=22.36 Aligned_cols=15 Identities=47% Similarity=0.984 Sum_probs=13.0
Q ss_pred cCcccccccccchhh
Q 034648 34 LGPREKALLADDPVL 48 (88)
Q Consensus 34 ~gaReKALL~eD~aL 48 (88)
+.|+|.+++.+||+.
T Consensus 16 LspkeR~~~k~~P~y 30 (53)
T d1x4pa1 16 LSPKERTLLKEDPAY 30 (53)
T ss_dssp SCHHHHHHHHHSGGG
T ss_pred CCHHHHHHhhcCCCe
Confidence 678999999999985
No 10
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.11 E-value=3.2 Score=21.43 Aligned_cols=18 Identities=17% Similarity=0.530 Sum_probs=15.2
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|.-++.|..|+|.|+..
T Consensus 12 ~F~~~~~L~~H~r~Htge 29 (36)
T d2dlka2 12 SFNFKKHLKEHMKLHSDT 29 (36)
T ss_dssp EESSHHHHHHHHHHHHTS
T ss_pred eeCChhHhccccCeeCCC
Confidence 566779999999999876
No 11
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.94 E-value=6.3 Score=19.43 Aligned_cols=18 Identities=11% Similarity=0.554 Sum_probs=14.5
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|-.+|.|..|.|.|+..
T Consensus 11 ~F~~~s~L~~H~r~Htge 28 (29)
T d1sp1a_ 11 RFMRSDHLSKHIKTHQNK 28 (29)
T ss_dssp CCSCSHHHHHHHHGGGCC
T ss_pred eecchHHhhhhcCccCCc
Confidence 466679999999999764
No 12
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.14 E-value=9.1 Score=19.30 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=13.4
Q ss_pred hhhhhhhhhhhccCCcc
Q 034648 3 YLLKTSIASHLRSHTQE 19 (88)
Q Consensus 3 fll~ssi~S~lRS~sq~ 19 (88)
|--.+.+..|+|+|+++
T Consensus 15 F~r~~~L~~H~r~Ht~k 31 (32)
T d1zfda_ 15 FVRNHDLIRHKKSHQEK 31 (32)
T ss_dssp BSSSHHHHHHHGGGTCC
T ss_pred eCCHHHHHHHhhhccCC
Confidence 44458899999999876
No 13
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=29.10 E-value=8.6 Score=22.61 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.9
Q ss_pred ccccccchhhhhhhhhhHHHHHH
Q 034648 39 KALLADDPVLKRFKSHKKSVWRL 61 (88)
Q Consensus 39 KALL~eD~aLKrFKS~K~sv~~l 61 (88)
.|||+-|++++==|...++|+.=
T Consensus 32 ~ALLeADVn~~vv~~f~~~ik~k 54 (84)
T d1j8yf1 32 KSLISADVNVKLVFSLTNKIKER 54 (84)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhcccCHHHHHHHHHHHHHH
Confidence 68999999999888888888764
No 14
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.54 E-value=10 Score=19.11 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=14.3
Q ss_pred chhhhhhhhhhhccCCc
Q 034648 2 AYLLKTSIASHLRSHTQ 18 (88)
Q Consensus 2 afll~ssi~S~lRS~sq 18 (88)
+|-.+|+|..|.|.|+-
T Consensus 21 ~F~~~s~L~~H~r~HtG 37 (38)
T d2cota2 21 SFSHSSDLSKHRRTHTG 37 (38)
T ss_dssp BCSCHHHHHHHHTTTCC
T ss_pred eeeCHHHHHHhCccCCC
Confidence 57778999999999874
No 15
>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.81 E-value=29 Score=19.93 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHhcCeeEEeee
Q 034648 52 KSHKKSVWRLKRMGDVLTIVVV 73 (88)
Q Consensus 52 KS~K~sv~~l~r~gdvLT~vVv 73 (88)
.+|..-+.-++..+|.++++|.
T Consensus 77 ~t~~eav~~l~~~~~~v~L~V~ 98 (103)
T d2h3la1 77 IEHGQAVSLLKTFQNTVELIIV 98 (103)
T ss_dssp CCHHHHHHHHHHCCSEEEEEEE
T ss_pred CCHHHHHHHHHhCCCeEEEEEE
Confidence 5899999999999999999885
No 16
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.23 E-value=13 Score=18.94 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=14.6
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|--++.+..|+|.|+..
T Consensus 16 ~F~~~~~L~~H~r~Ht~~ 33 (35)
T d1srka_ 16 AFTTKANCARHLKVHTDT 33 (35)
T ss_dssp EESSHHHHHHHHGGGTSC
T ss_pred cccChHHHHHHccccCCc
Confidence 466679999999999765
No 17
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.14 E-value=12 Score=18.80 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=14.6
Q ss_pred chhhhhhhhhhhccCCcc
Q 034648 2 AYLLKTSIASHLRSHTQE 19 (88)
Q Consensus 2 afll~ssi~S~lRS~sq~ 19 (88)
+|-.+++|..|+|.|..+
T Consensus 17 ~F~~~~~L~~H~r~H~~~ 34 (36)
T d1x6ha2 17 TFRQKQLLDMHFKRYHDP 34 (36)
T ss_dssp EESSHHHHHHHHHHTTCS
T ss_pred CcCCHhHHHHhCcccCCC
Confidence 577789999999998654
No 18
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.99 E-value=5.1 Score=19.83 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=12.3
Q ss_pred chhhhhhhhhhhccC
Q 034648 2 AYLLKTSIASHLRSH 16 (88)
Q Consensus 2 afll~ssi~S~lRS~ 16 (88)
+|-.+|+|..|.|.|
T Consensus 11 ~F~~~s~L~~HqriH 25 (26)
T d1x6ea2 11 AFSQNSGLINHQRIH 25 (26)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred eeccCcccccCccCC
Confidence 567789999999876
No 19
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.39 E-value=5.9 Score=19.71 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=13.0
Q ss_pred chhhhhhhhhhhccCCc
Q 034648 2 AYLLKTSIASHLRSHTQ 18 (88)
Q Consensus 2 afll~ssi~S~lRS~sq 18 (88)
+|--++.|..|+|.|+.
T Consensus 13 ~F~~~~~L~~H~r~HTG 29 (30)
T d1ubdc3 13 RFSLDFNLRTHVRIHTG 29 (30)
T ss_dssp EESCHHHHHHHHHHHHC
T ss_pred eECcHHHcCccccccCC
Confidence 45566899999998764
No 20
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.07 E-value=24 Score=19.66 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHhcCeeEEee
Q 034648 52 KSHKKSVWRLKRMGDVLTIVV 72 (88)
Q Consensus 52 KS~K~sv~~l~r~gdvLT~vV 72 (88)
.||..-+.-+++.+|.++++|
T Consensus 72 ~t~~ea~~~lk~~~~~v~L~V 92 (96)
T d2fcfa1 72 ASHEQAVEAIRKAGNPVVFMV 92 (96)
T ss_dssp CCHHHHHHHHHTCCSSEEEEE
T ss_pred CCHHHHHHHHHcCCCeEEEEE
Confidence 589999999999999999876
No 21
>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.38 E-value=39 Score=18.52 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=21.1
Q ss_pred hhhhhhhhhHHHHHHHHhcCeeEEeee
Q 034648 47 VLKRFKSHKKSVWRLKRMGDVLTIVVV 73 (88)
Q Consensus 47 aLKrFKS~K~sv~~l~r~gdvLT~vVv 73 (88)
.+.. .||..-+.-++..++.++++|.
T Consensus 63 ~v~~-~s~~e~~~~l~~~~~~v~L~v~ 88 (93)
T d1rgra_ 63 DVRE-VTHSAAVEALKEAGSIVRLYVM 88 (93)
T ss_dssp ECSS-SCHHHHHHHHHHTTTEEEEEEE
T ss_pred ECCC-CCHHHHHHHHHcCCCEEEEEEE
Confidence 4444 5899999999999999998874
No 22
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.93 E-value=6 Score=19.51 Aligned_cols=16 Identities=25% Similarity=0.600 Sum_probs=12.4
Q ss_pred chhhhhhhhhhhccCC
Q 034648 2 AYLLKTSIASHLRSHT 17 (88)
Q Consensus 2 afll~ssi~S~lRS~s 17 (88)
+|--++.|..|+|.|+
T Consensus 12 ~F~~~~~L~~H~r~HT 27 (28)
T d1a1ia2 12 NFSRSDHLTTHIRTHT 27 (28)
T ss_dssp EESCHHHHHHHHHHHH
T ss_pred EecccccccccCCCcc
Confidence 4666788999999874
No 23
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.84 E-value=14 Score=22.21 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=18.3
Q ss_pred ccccccchhhhhhhhhhHHHHH
Q 034648 39 KALLADDPVLKRFKSHKKSVWR 60 (88)
Q Consensus 39 KALL~eD~aLKrFKS~K~sv~~ 60 (88)
.|||+-|++++==|...+.|++
T Consensus 41 ~ALLeADVn~~vV~~f~~~Ik~ 62 (99)
T d1wgwa_ 41 TALLEADVNIKLVKQLRENVKS 62 (99)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHccCCHHHHHHHHHHHHH
Confidence 6899999999888887777754
Done!