BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034649
MAGNRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKY
SEHFLRKYVRNKTPEIMPKINSFFTDPQ

High Scoring Gene Products

Symbol, full name Information P value
AT3G48140 protein from Arabidopsis thaliana 1.6e-31
AT3G29970 protein from Arabidopsis thaliana 5.7e-20

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034649
        (88 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2100484 - symbol:AT3G48140 "AT3G48140" species...   346  1.6e-31   1
TAIR|locus:2829357 - symbol:AT3G29970 "AT3G29970" species...   237  5.7e-20   1


>TAIR|locus:2100484 [details] [associations]
            symbol:AT3G48140 "AT3G48140" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0010150 "leaf senescence"
            evidence=ISS] [GO:0005777 "peroxisome" evidence=IDA] EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0005777 EMBL:AL096856
            InterPro:IPR010530 Pfam:PF06522 UniGene:At.66502 EMBL:AY081326
            EMBL:BT001183 EMBL:AK317041 EMBL:F19976 IPI:IPI00540457 PIR:T13003
            RefSeq:NP_190397.1 STRING:Q42338 PaxDb:Q42338 PRIDE:Q42338
            EnsemblPlants:AT3G48140.1 GeneID:823969 KEGG:ath:AT3G48140
            TAIR:At3g48140 eggNOG:NOG264292 HOGENOM:HOG000242252
            InParanoid:Q42338 OMA:HGLRKFV PhylomeDB:Q42338
            ProtClustDB:CLSN2913370 ArrayExpress:Q42338 Genevestigator:Q42338
            Uniprot:Q42338
        Length = 88

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 62/84 (73%), Positives = 73/84 (86%)

Query:     4 NRWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEH 63
             +RW+RPEV+PLFAA GVAVGIC   L+RNI  NPEVR TK+NRAAG+L+N+AEGEKY E+
Sbjct:     3 SRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKEN 62

Query:    64 FLRKYVRNKTPEIMPKINSFFTDP 87
             FLRK+VRNK PEIMP +N FFTDP
Sbjct:    63 FLRKFVRNKKPEIMPGLNKFFTDP 86


>TAIR|locus:2829357 [details] [associations]
            symbol:AT3G29970 "AT3G29970" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AP000736
            InterPro:IPR010530 Pfam:PF06522 HOGENOM:HOG000242252
            IPI:IPI00526407 RefSeq:NP_189632.1 UniGene:At.36845 STRING:Q9LJ47
            PaxDb:Q9LJ47 PRIDE:Q9LJ47 EnsemblPlants:AT3G29970.1 GeneID:822700
            KEGG:ath:AT3G29970 TAIR:At3g29970 eggNOG:NOG240018
            InParanoid:Q9LJ47 OMA:EGEKYAQ PhylomeDB:Q9LJ47
            ProtClustDB:CLSN2684506 Genevestigator:Q9LJ47 Uniprot:Q9LJ47
        Length = 87

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 39/81 (48%), Positives = 57/81 (70%)

Query:     5 RWIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHF 64
             RW+RPEV+PL  A+G    +   QL RN  +NP+ R+ K++R  G+LEN  EGEKY++H 
Sbjct:     3 RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHN 62

Query:    65 LRKYVRNKTPEIMPKINSFFT 85
              RKY+R + P++MP +N FF+
Sbjct:    63 FRKYLRTRQPQVMPSLNRFFS 83


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        88   0.00091  102 3  11 22  0.44    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  113 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.19u 0.12s 10.31t   Elapsed:  00:00:00
  Total cpu time:  10.19u 0.12s 10.31t   Elapsed:  00:00:00
  Start:  Thu May  9 22:24:01 2013   End:  Thu May  9 22:24:01 2013

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