BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034649
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
           Thaliana
 pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
           Thaliana
          Length = 442

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 14/75 (18%)

Query: 11  VFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGV----LENYAEGEKYSEHFLR 66
           VF  FAAVGV   I G        I P V +    +AAG+    ++ +   E ++  F+ 
Sbjct: 299 VFRTFAAVGVDPAIMG--------IGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFV- 349

Query: 67  KYVRNKTPEIMPKIN 81
            Y RNK      KIN
Sbjct: 350 -YCRNKLGLDPEKIN 363


>pdb|2C7Y|A Chain A, Plant Enzyme
 pdb|2C7Y|B Chain B, Plant Enzyme
 pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
          Length = 404

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 14/75 (18%)

Query: 11  VFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGV----LENYAEGEKYSEHFLR 66
           VF  FAAVGV   I G        I P V +    +AAG+    ++ +   E ++  F+ 
Sbjct: 282 VFRTFAAVGVDPAIMG--------IGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFV- 332

Query: 67  KYVRNKTPEIMPKIN 81
            Y RNK      KIN
Sbjct: 333 -YCRNKLGLDPEKIN 346


>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
           Sunflower
 pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
           Sunflower
          Length = 440

 Score = 26.2 bits (56), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 11  VFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHFLRKYVR 70
           VF  FAAVGV   I G        I P V +    +AAG+  +  +  + +E F  ++V 
Sbjct: 302 VFRTFAAVGVPPSIMG--------IGPAVAIPAAVKAAGLQIDDIDLFEINEAFASQFVY 353

Query: 71  -NKTPEIMP-KIN 81
             K  EI P KIN
Sbjct: 354 CQKKLEIDPQKIN 366


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,723,602
Number of Sequences: 62578
Number of extensions: 90126
Number of successful extensions: 184
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 5
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)