BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034649
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P06617|TR2M_PSESS Tryptophan 2-monooxygenase OS=Pseudomonas syringae pv. savastanoi
           GN=iaaM PE=3 SV=1
          Length = 557

 Score = 32.0 bits (71), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 2   AGNRWIRPEVFPLFAAVGVAVG 23
            G+RW RPE F LF ++G+  G
Sbjct: 221 GGDRWARPEDFELFGSLGIGSG 242


>sp|P53987|MOT1_RAT Monocarboxylate transporter 1 OS=Rattus norvegicus GN=Slc16a1 PE=1
           SV=1
          Length = 494

 Score = 31.6 bits (70), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 2   AGNRWIRPEVFPLFAAVGVAVGIC 25
           A  RWIRP V   FAA  VA G+C
Sbjct: 313 ANTRWIRPRVQYFFAASVVANGVC 336


>sp|Q9CHD5|ARGC_LACLA N-acetyl-gamma-glutamyl-phosphate reductase OS=Lactococcus lactis
          subsp. lactis (strain IL1403) GN=argC PE=3 SV=1
          Length = 340

 Score = 30.4 bits (67), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 7/49 (14%)

Query: 16 AAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHF 64
          A VG+  G  G++L R    +PEV VTK      +      GEK SEHF
Sbjct: 5  AIVGIR-GYSGLELFRIFYYHPEVEVTK------IYATSHYGEKLSEHF 46


>sp|P68570|BDBA_BPSPB Disulfide bond formation protein A OS=Bacillus phage SPbeta GN=bdbA
           PE=3 SV=1
          Length = 137

 Score = 29.3 bits (64), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 35  INPEV-RVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKTPEIM 77
           I PE+  V K+ +      N  E E Y+  FL KY  NKTP I+
Sbjct: 64  IKPELNEVIKKEKLKVQALNIEEKENYNTEFLDKYNLNKTPTIL 107


>sp|P68569|BDBA_BACSU SPBc2 prophage-derived disulfide bond formation protein A
           OS=Bacillus subtilis (strain 168) GN=bdbA PE=3 SV=1
          Length = 137

 Score = 29.3 bits (64), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 35  INPEV-RVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKTPEIM 77
           I PE+  V K+ +      N  E E Y+  FL KY  NKTP I+
Sbjct: 64  IKPELNEVIKKEKLKVQALNIEEKENYNTEFLDKYNLNKTPTIL 107


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.139    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,244,182
Number of Sequences: 539616
Number of extensions: 1143262
Number of successful extensions: 2784
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2782
Number of HSP's gapped (non-prelim): 5
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)