Query 034649
Match_columns 88
No_of_seqs 102 out of 214
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06522 B12D: NADH-ubiquinone 99.9 4.3E-26 9.4E-31 144.8 4.3 72 6-86 1-72 (73)
2 PF05251 UPF0197: Uncharacteri 79.3 3.4 7.5E-05 26.8 3.5 30 7-36 11-42 (77)
3 PF06679 DUF1180: Protein of u 68.4 7.1 0.00015 28.3 3.3 38 13-53 97-134 (163)
4 PF01307 Plant_vir_prot: Plant 61.3 7.5 0.00016 26.2 2.2 24 14-39 12-35 (104)
5 PRK11677 hypothetical protein; 58.5 15 0.00032 25.9 3.3 51 16-70 6-58 (134)
6 PF13056 DUF3918: Protein of u 56.9 13 0.00028 21.7 2.4 16 16-31 7-22 (43)
7 PF15114 UPF0640: Uncharacteri 53.2 8.2 0.00018 24.6 1.2 13 10-22 25-37 (69)
8 TIGR00847 ccoS cytochrome oxid 52.4 20 0.00043 21.4 2.7 23 11-33 7-29 (51)
9 PF08216 CTNNBL: Catenin-beta- 50.7 9.3 0.0002 26.1 1.3 17 8-24 76-92 (108)
10 KOG2931 Differentiation-relate 48.5 3.7 7.9E-05 33.0 -1.1 37 16-52 123-164 (326)
11 COG3592 Uncharacterized conser 47.6 8.2 0.00018 24.9 0.6 12 68-79 39-50 (74)
12 PRK13755 putative mercury tran 46.5 29 0.00064 24.7 3.3 22 11-32 53-74 (139)
13 PF03672 UPF0154: Uncharacteri 46.4 42 0.0009 21.0 3.6 20 13-35 4-23 (64)
14 TIGR03052 PS_I_psaI photosyste 46.2 39 0.00084 18.4 3.0 25 6-30 2-26 (31)
15 PRK13707 conjugal transfer pil 45.5 28 0.00061 23.1 2.9 19 18-36 47-65 (101)
16 PF03597 CcoS: Cytochrome oxid 45.4 31 0.00066 20.0 2.7 22 11-32 6-27 (45)
17 PF14962 AIF-MLS: Mitochondria 43.1 8 0.00017 28.7 0.0 27 12-38 46-72 (180)
18 PF03096 Ndr: Ndr family; Int 43.0 2.4 5.1E-05 33.2 -2.9 25 17-41 101-125 (283)
19 KOG3491 Predicted membrane pro 40.2 61 0.0013 20.3 3.6 21 14-34 42-62 (65)
20 COG3763 Uncharacterized protei 39.7 22 0.00047 22.8 1.6 22 11-35 9-30 (71)
21 PF15050 SCIMP: SCIMP protein 38.6 98 0.0021 22.0 4.9 57 15-81 16-73 (133)
22 PF14880 COX14: Cytochrome oxi 38.3 47 0.001 19.8 2.9 26 11-36 18-43 (59)
23 PF10661 EssA: WXG100 protein 36.7 43 0.00093 23.6 2.9 20 15-34 125-144 (145)
24 CHL00186 psaI photosystem I su 36.3 65 0.0014 18.1 3.0 26 5-30 4-29 (36)
25 PF13400 Tad: Putative Flp pil 35.7 72 0.0016 17.7 3.3 22 11-32 11-32 (48)
26 PF07178 TraL: TraL protein; 35.4 65 0.0014 20.7 3.4 26 9-34 21-57 (95)
27 PF07444 Ycf66_N: Ycf66 protei 34.9 67 0.0014 20.9 3.4 25 14-40 9-33 (84)
28 PF08114 PMP1_2: ATPase proteo 34.4 66 0.0014 18.7 2.9 28 7-34 6-34 (43)
29 PF12732 YtxH: YtxH-like prote 34.1 55 0.0012 19.9 2.8 16 14-29 3-18 (74)
30 PF14159 CAAD: CAAD domains of 33.7 51 0.0011 21.4 2.7 19 20-38 55-73 (90)
31 PRK11877 psaI photosystem I re 31.3 77 0.0017 18.0 2.8 26 5-30 8-33 (38)
32 PF10907 DUF2749: Protein of u 30.9 21 0.00045 22.6 0.4 20 57-76 36-56 (66)
33 PF12606 RELT: Tumour necrosis 30.6 88 0.0019 18.5 3.1 10 11-20 6-15 (50)
34 PF11196 DUF2834: Protein of u 30.5 77 0.0017 20.8 3.2 22 11-32 74-95 (97)
35 PRK11367 hypothetical protein; 29.2 17 0.00037 30.2 -0.1 23 11-33 6-28 (476)
36 COG3766 Predicted membrane pro 29.2 47 0.001 23.6 2.0 37 15-51 79-115 (133)
37 PF09731 Mitofilin: Mitochondr 27.7 46 0.001 27.4 2.1 26 11-40 8-33 (582)
38 PLN02949 transferase, transfer 27.7 73 0.0016 25.9 3.2 40 4-45 107-148 (463)
39 PF12072 DUF3552: Domain of un 27.0 83 0.0018 22.8 3.1 20 14-33 4-23 (201)
40 PF14654 Epiglycanin_C: Mucin, 26.3 69 0.0015 21.9 2.4 22 12-33 23-45 (106)
41 PF03232 COQ7: Ubiquinone bios 26.3 97 0.0021 22.4 3.4 30 5-34 59-89 (172)
42 PF06295 DUF1043: Protein of u 25.9 77 0.0017 21.6 2.6 16 55-70 39-54 (128)
43 PRK00523 hypothetical protein; 25.5 94 0.002 19.9 2.8 15 21-35 17-31 (72)
44 PF12669 P12: Virus attachment 24.8 57 0.0012 19.6 1.6 15 22-36 8-23 (58)
45 PLN02777 photosystem I P subun 24.7 61 0.0013 23.9 2.0 19 20-38 130-148 (167)
46 PF10269 Tmemb_185A: Transmemb 23.9 81 0.0018 23.5 2.6 23 11-33 150-172 (238)
47 PF06624 RAMP4: Ribosome assoc 23.8 53 0.0011 20.3 1.4 28 6-33 34-61 (63)
48 PRK11089 PTS system glucose-sp 23.7 56 0.0012 27.3 1.9 14 12-25 59-72 (477)
49 KOG4431 Uncharacterized protei 23.5 67 0.0015 21.8 1.9 22 10-31 30-51 (100)
50 TIGR02005 PTS-IIBC-alpha PTS s 23.5 53 0.0011 27.8 1.7 14 12-25 65-78 (524)
51 PF15312 JSRP: Junctional sarc 23.5 1.5E+02 0.0033 18.6 3.4 22 14-35 15-36 (65)
52 PF04854 DUF624: Protein of un 23.5 86 0.0019 18.8 2.3 18 20-37 22-39 (77)
53 PRK07021 fliL flagellar basal 23.3 83 0.0018 22.0 2.5 14 18-31 29-42 (162)
54 PF14898 DUF4491: Domain of un 22.5 1.1E+02 0.0025 20.5 2.9 22 10-31 33-54 (94)
55 cd00922 Cyt_c_Oxidase_IV Cytoc 22.3 1.3E+02 0.0029 20.9 3.3 19 16-34 81-99 (136)
56 PF09527 ATPase_gene1: Putativ 22.2 1.6E+02 0.0035 16.7 3.2 20 13-32 32-53 (55)
57 PF02936 COX4: Cytochrome c ox 22.0 1.3E+02 0.0028 21.1 3.2 23 15-37 80-102 (142)
58 PF11654 DUF2665: Protein of u 22.0 1E+02 0.0022 18.2 2.3 15 18-32 11-25 (47)
59 PF05421 DUF751: Protein of un 21.9 1.5E+02 0.0032 18.2 3.1 33 6-38 2-35 (61)
60 TIGR02003 PTS-II-BC-unk1 PTS s 21.9 64 0.0014 27.4 1.9 14 12-25 63-76 (548)
61 COG3105 Uncharacterized protei 21.7 1.4E+02 0.003 21.4 3.3 20 15-34 10-29 (138)
62 PF05356 Phage_Coat_B: Phage C 21.6 1.5E+02 0.0033 19.4 3.2 19 15-33 65-83 (83)
63 MTH00030 ND3 NADH dehydrogenas 21.3 1.3E+02 0.0028 20.7 3.0 27 7-33 1-29 (123)
64 PF13571 DUF4133: Domain of un 20.9 62 0.0013 21.8 1.3 35 12-52 41-75 (96)
65 PRK06287 cobalt transport prot 20.8 1.8E+02 0.004 19.3 3.7 24 12-35 79-102 (107)
66 PF09574 DUF2374: Protein of 20.8 1.9E+02 0.0041 16.8 3.4 16 11-26 16-31 (42)
67 PF15086 UPF0542: Uncharacteri 20.7 1.3E+02 0.0028 19.4 2.7 19 11-33 30-48 (74)
68 PHA02101 hypothetical protein 20.4 69 0.0015 21.5 1.5 33 21-53 60-92 (101)
69 PF11833 DUF3353: Protein of u 20.1 1.1E+02 0.0024 22.5 2.6 15 18-32 121-135 (194)
70 TIGR02161 napC_nirT periplasmi 20.0 1.3E+02 0.0029 21.9 3.1 36 8-43 11-51 (185)
71 PF08602 Mgr1: Mgr1-like, i-AA 20.0 1.4E+02 0.0031 24.4 3.5 15 19-33 64-78 (363)
No 1
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=99.92 E-value=4.3e-26 Score=144.84 Aligned_cols=72 Identities=43% Similarity=0.617 Sum_probs=68.9
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhcCCceeEecCCccccchhhhhhhhhhhhhHHHHHhhcCCCCcCccccccCC
Q 034649 6 WIRPEVFPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKTPEIMPKINSFFT 85 (88)
Q Consensus 6 wi~pel~PL~~~vg~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~v~~n~~eG~~y~~h~~R~~~~~~~p~i~p~ln~~f~ 85 (88)
|.+|||||||+|||+|+++|+|+++|+|++||||+|+|++| .+++++|++|..|||++.+. +|||.+|++ +
T Consensus 1 ~~~pel~PL~~~vg~a~~~a~~~~~r~l~~~PdV~~~k~~~-------~~pw~~~~~~~~~K~~~~~~-~~~~~~~~~-p 71 (73)
T PF06522_consen 1 KKHPELYPLFVIVGVAVGGATFYLYRLLLTNPDVRWNKKNR-------PEPWEKYKPHEQRKFYSINQ-DYMPLKNNF-P 71 (73)
T ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCC-------cChhhhcCccccEEeecccc-ccccccccC-C
Confidence 89999999999999999999999999999999999999999 56799999999999999988 999999998 6
Q ss_pred C
Q 034649 86 D 86 (88)
Q Consensus 86 ~ 86 (88)
|
T Consensus 72 d 72 (73)
T PF06522_consen 72 D 72 (73)
T ss_pred C
Confidence 5
No 2
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=79.28 E-value=3.4 Score=26.76 Aligned_cols=30 Identities=13% Similarity=0.391 Sum_probs=21.0
Q ss_pred CCCcchhHHHHH--HHHHHHHHHHHHHHhhcC
Q 034649 7 IRPEVFPLFAAV--GVAVGICGMQLVRNICIN 36 (88)
Q Consensus 7 i~pel~PL~~~v--g~a~~~a~~~~~R~l~~n 36 (88)
++|++||.+.++ ++|.+..+++....++++
T Consensus 11 V~p~~~p~La~vll~iGl~fta~Ffiyevts~ 42 (77)
T PF05251_consen 11 VNPALYPHLAVVLLAIGLFFTAWFFIYEVTST 42 (77)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 578999998775 445556677777766543
No 3
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=68.41 E-value=7.1 Score=28.32 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceeEecCCccccchhh
Q 034649 13 PLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLEN 53 (88)
Q Consensus 13 PL~~~vg~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~v~~n 53 (88)
-++|++|+.+.+..|+++|-+.... =.|+.|+.|++.+
T Consensus 97 ~~~Vl~g~s~l~i~yfvir~~R~r~---~~rktRkYgvl~~ 134 (163)
T PF06679_consen 97 ALYVLVGLSALAILYFVIRTFRLRR---RNRKTRKYGVLTT 134 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc---ccccceeecccCC
Confidence 3678888888999999999553221 1245567777765
No 4
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=61.30 E-value=7.5 Score=26.17 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCce
Q 034649 14 LFAAVGVAVGICGMQLVRNICINPEV 39 (88)
Q Consensus 14 L~~~vg~a~~~a~~~~~R~l~~nPdV 39 (88)
|.+++|+++++++|.+.|+ +-|.|
T Consensus 12 l~~aiG~~lal~i~~ltr~--tlPhv 35 (104)
T PF01307_consen 12 LAAAIGVSLALIIFTLTRS--TLPHV 35 (104)
T ss_pred hHHHHHHHHHHHHHHhhcC--CCCCC
Confidence 5678899999999999995 45654
No 5
>PRK11677 hypothetical protein; Provisional
Probab=58.47 E-value=15 Score=25.88 Aligned_cols=51 Identities=31% Similarity=0.464 Sum_probs=24.4
Q ss_pred HHHHHHHHHH-HHHHHHHhhcCCceeEecCCccccchhh-hhhhhhhhhhHHHHHhh
Q 034649 16 AAVGVAVGIC-GMQLVRNICINPEVRVTKQNRAAGVLEN-YAEGEKYSEHFLRKYVR 70 (88)
Q Consensus 16 ~~vg~a~~~a-~~~~~R~l~~nPdVr~~k~~r~~~v~~n-~~eG~~y~~h~~R~~~~ 70 (88)
+++|+.+|+. +|++.| + +++.+ .++.+...-+|. ..|=+.|++-..-||-.
T Consensus 6 a~i~livG~iiG~~~~R-~-~~~~~--~~q~~le~eLe~~k~ele~YkqeV~~HFa~ 58 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMR-F-GNRKL--RQQQALQYELEKNKAELEEYRQELVSHFAR 58 (134)
T ss_pred HHHHHHHHHHHHHHHHh-h-ccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 444555 4 45554 233333333333 24446677665555543
No 6
>PF13056 DUF3918: Protein of unknown function (DUF3918)
Probab=56.87 E-value=13 Score=21.66 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 034649 16 AAVGVAVGICGMQLVR 31 (88)
Q Consensus 16 ~~vg~a~~~a~~~~~R 31 (88)
-.+++|+|+++|++.+
T Consensus 7 Slla~GaG~aAy~~A~ 22 (43)
T PF13056_consen 7 SLLAFGAGAAAYQMAQ 22 (43)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 3577888888998874
No 7
>PF15114 UPF0640: Uncharacterised protein family UPF0640
Probab=53.22 E-value=8.2 Score=24.64 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=11.0
Q ss_pred cchhHHHHHHHHH
Q 034649 10 EVFPLFAAVGVAV 22 (88)
Q Consensus 10 el~PL~~~vg~a~ 22 (88)
-.+|+|+++|+|+
T Consensus 25 RFLP~FF~lGaal 37 (69)
T PF15114_consen 25 RFLPLFFVLGAAL 37 (69)
T ss_pred hhhHHHHHhhhhh
Confidence 4689999999875
No 8
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=52.38 E-value=20 Score=21.41 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 034649 11 VFPLFAAVGVAVGICGMQLVRNI 33 (88)
Q Consensus 11 l~PL~~~vg~a~~~a~~~~~R~l 33 (88)
+||+-+++|+++..+.+-.+|+=
T Consensus 7 LIpiSl~l~~~~l~~f~Wavk~G 29 (51)
T TIGR00847 7 LIPISLLLGGVGLVAFLWSLKSG 29 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC
Confidence 68888888888888887777743
No 9
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=50.73 E-value=9.3 Score=26.10 Aligned_cols=17 Identities=24% Similarity=0.675 Sum_probs=13.3
Q ss_pred CCcchhHHHHHHHHHHH
Q 034649 8 RPEVFPLFAAVGVAVGI 24 (88)
Q Consensus 8 ~pel~PL~~~vg~a~~~ 24 (88)
.|++||+|+-.|+...+
T Consensus 76 ~P~LYp~lv~l~~v~sL 92 (108)
T PF08216_consen 76 APELYPELVELGAVPSL 92 (108)
T ss_pred ChhHHHHHHHcCCHHHH
Confidence 58999999988765543
No 10
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=48.49 E-value=3.7 Score=33.00 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcee-----EecCCccccchh
Q 034649 16 AAVGVAVGICGMQLVRNICINPEVR-----VTKQNRAAGVLE 52 (88)
Q Consensus 16 ~~vg~a~~~a~~~~~R~l~~nPdVr-----~~k~~r~~~v~~ 52 (88)
.+||+|+|+.+|.++|-++.+|+-- ++-...+.+..|
T Consensus 123 ~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwie 164 (326)
T KOG2931|consen 123 SVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIE 164 (326)
T ss_pred eEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHH
Confidence 4589999999999999999999933 455555555444
No 11
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=47.58 E-value=8.2 Score=24.88 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=10.0
Q ss_pred HhhcCCCCcCcc
Q 034649 68 YVRNKTPEIMPK 79 (88)
Q Consensus 68 ~~~~~~p~i~p~ 79 (88)
|..+++|+|||.
T Consensus 39 F~~~rkPWI~Pd 50 (74)
T COG3592 39 FNLGRKPWIMPD 50 (74)
T ss_pred cccCCCCccCCC
Confidence 457899999996
No 12
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=46.48 E-value=29 Score=24.74 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 034649 11 VFPLFAAVGVAVGICGMQLVRN 32 (88)
Q Consensus 11 l~PL~~~vg~a~~~a~~~~~R~ 32 (88)
|+|||+++.+..-+.+|+.-|+
T Consensus 53 LlPlFA~iALlanalgW~sHRQ 74 (139)
T PRK13755 53 LLPLFAAIALLANALGWFSHRQ 74 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999988888888888775
No 13
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=46.43 E-value=42 Score=20.99 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 034649 13 PLFAAVGVAVGICGMQLVRNICI 35 (88)
Q Consensus 13 PL~~~vg~a~~~a~~~~~R~l~~ 35 (88)
.|.+++|++ ++||++|+-+.
T Consensus 4 ilali~G~~---~Gff~ar~~~~ 23 (64)
T PF03672_consen 4 ILALIVGAV---IGFFIARKYME 23 (64)
T ss_pred HHHHHHHHH---HHHHHHHHHHH
Confidence 344444433 34555655543
No 14
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=46.19 E-value=39 Score=18.39 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=20.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHH
Q 034649 6 WIRPEVFPLFAAVGVAVGICGMQLV 30 (88)
Q Consensus 6 wi~pel~PL~~~vg~a~~~a~~~~~ 30 (88)
|++.=++||...+-=|+++|..++.
T Consensus 2 ~LPsI~VPlVglvfPai~Ma~lf~y 26 (31)
T TIGR03052 2 WLPSIFVPLVGLVFPAVFMALLFRY 26 (31)
T ss_pred CCceeehhHHHHHHHHHHHHHHHHh
Confidence 6777789999999888888887754
No 15
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=45.49 E-value=28 Score=23.14 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 034649 18 VGVAVGICGMQLVRNICIN 36 (88)
Q Consensus 18 vg~a~~~a~~~~~R~l~~n 36 (88)
+|+.+|++.+...|++-.+
T Consensus 47 ~g~i~g~~~~~~~r~lK~g 65 (101)
T PRK13707 47 FGIIAAVLVWFGIRKLKKG 65 (101)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 5666777888888887544
No 16
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=45.43 E-value=31 Score=19.97 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 034649 11 VFPLFAAVGVAVGICGMQLVRN 32 (88)
Q Consensus 11 l~PL~~~vg~a~~~a~~~~~R~ 32 (88)
++|+-+++|+++..+.+-.+|+
T Consensus 6 lip~sl~l~~~~l~~f~Wavk~ 27 (45)
T PF03597_consen 6 LIPVSLILGLIALAAFLWAVKS 27 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 5788888888877777777664
No 17
>PF14962 AIF-MLS: Mitochondria Localisation Sequence; PDB: 1M6I_A.
Probab=43.15 E-value=8 Score=28.71 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCc
Q 034649 12 FPLFAAVGVAVGICGMQLVRNICINPE 38 (88)
Q Consensus 12 ~PL~~~vg~a~~~a~~~~~R~l~~nPd 38 (88)
+-.+++||+.+.++++|.+|-+..|..
T Consensus 46 ~~Y~l~vG~t~~gag~YaYkTv~~dq~ 72 (180)
T PF14962_consen 46 MVYYLVVGVTVSGAGYYAYKTVKSDQA 72 (180)
T ss_dssp ---------------------------
T ss_pred EEEEEEECeEEEeeEEEEEEeecchhH
Confidence 456888999999999999998766643
No 18
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=43.02 E-value=2.4 Score=33.23 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceeE
Q 034649 17 AVGVAVGICGMQLVRNICINPEVRV 41 (88)
Q Consensus 17 ~vg~a~~~a~~~~~R~l~~nPdVr~ 41 (88)
+||+|+|+.++.++|.++.+|+...
T Consensus 101 vIg~GvGAGAnIL~rfAl~~p~~V~ 125 (283)
T PF03096_consen 101 VIGFGVGAGANILARFALKHPERVL 125 (283)
T ss_dssp EEEEEETHHHHHHHHHHHHSGGGEE
T ss_pred EEEEeeccchhhhhhccccCcccee
Confidence 4788889999999999999998543
No 19
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=40.22 E-value=61 Score=20.31 Aligned_cols=21 Identities=29% Similarity=0.192 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 034649 14 LFAAVGVAVGICGMQLVRNIC 34 (88)
Q Consensus 14 L~~~vg~a~~~a~~~~~R~l~ 34 (88)
|.++|=+.+|+|.|+++|.+.
T Consensus 42 lglFvFVVcGSa~FqIIr~~~ 62 (65)
T KOG3491|consen 42 LGLFVFVVCGSALFQIIRTAT 62 (65)
T ss_pred HHHHHHHhhcHHHHHHHHHHh
Confidence 444455578889999999764
No 20
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.74 E-value=22 Score=22.83 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=12.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhc
Q 034649 11 VFPLFAAVGVAVGICGMQLVRNICI 35 (88)
Q Consensus 11 l~PL~~~vg~a~~~a~~~~~R~l~~ 35 (88)
+++|.+.+|+.+| ||++|+.+.
T Consensus 9 ~ivl~ll~G~~~G---~fiark~~~ 30 (71)
T COG3763 9 LIVLALLAGLIGG---FFIARKQMK 30 (71)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHH
Confidence 3444444444443 777777654
No 21
>PF15050 SCIMP: SCIMP protein
Probab=38.60 E-value=98 Score=21.95 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHh-hcCCceeEecCCccccchhhhhhhhhhhhhHHHHHhhcCCCCcCcccc
Q 034649 15 FAAVGVAVGICGMQLVRNI-CINPEVRVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKTPEIMPKIN 81 (88)
Q Consensus 15 ~~~vg~a~~~a~~~~~R~l-~~nPdVr~~k~~r~~~v~~n~~eG~~y~~h~~R~~~~~~~p~i~p~ln 81 (88)
+++|++++|+..|-..|.+ .....-.+.|.-++. +.+|.+.|.+ +-+++|--.|.|+
T Consensus 16 II~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~----~rdeEkmYEN------v~n~~~~~LPpLP 73 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQK----QRDEEKMYEN------VLNQSPVQLPPLP 73 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccceeccchhhh----cccHHHHHHH------hhcCCcCCCCCCC
Confidence 4556777777666555544 334444444433332 2455666653 3455665555553
No 22
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=38.27 E-value=47 Score=19.80 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcC
Q 034649 11 VFPLFAAVGVAVGICGMQLVRNICIN 36 (88)
Q Consensus 11 l~PL~~~vg~a~~~a~~~~~R~l~~n 36 (88)
++-|+.+.+.|++++++..++....+
T Consensus 18 V~~Lig~T~~~g~~~~~~~y~~~~~~ 43 (59)
T PF14880_consen 18 VLGLIGFTVYGGGLTVYTVYSYFKYN 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888899999988877655
No 23
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=36.74 E-value=43 Score=23.60 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 034649 15 FAAVGVAVGICGMQLVRNIC 34 (88)
Q Consensus 15 ~~~vg~a~~~a~~~~~R~l~ 34 (88)
++.+-+++|+.+|...|+++
T Consensus 125 i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 125 IGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33344677888999999875
No 24
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=36.28 E-value=65 Score=18.09 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=21.3
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHH
Q 034649 5 RWIRPEVFPLFAAVGVAVGICGMQLV 30 (88)
Q Consensus 5 ~wi~pel~PL~~~vg~a~~~a~~~~~ 30 (88)
.|+|.=+.||...+-=|+++|.++++
T Consensus 4 s~LPsI~VPlVGlvfPai~Ma~lf~y 29 (36)
T CHL00186 4 SNLPSILVPLVGLVFPAIAMASLFLY 29 (36)
T ss_pred ccCchhHHhHHHHHHHHHHHHHHHHH
Confidence 47788889999999888888877654
No 25
>PF13400 Tad: Putative Flp pilus-assembly TadE/G-like
Probab=35.66 E-value=72 Score=17.74 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=14.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 034649 11 VFPLFAAVGVAVGICGMQLVRN 32 (88)
Q Consensus 11 l~PL~~~vg~a~~~a~~~~~R~ 32 (88)
++|+++++|+++-..-.+..|.
T Consensus 11 ~~~~l~~~~~~id~~~~~~~r~ 32 (48)
T PF13400_consen 11 LVPLLLLIGLAIDVGRAYLART 32 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776666666553
No 26
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=35.37 E-value=65 Score=20.71 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=16.5
Q ss_pred CcchhHHHH-----------HHHHHHHHHHHHHHHhh
Q 034649 9 PEVFPLFAA-----------VGVAVGICGMQLVRNIC 34 (88)
Q Consensus 9 pel~PL~~~-----------vg~a~~~a~~~~~R~l~ 34 (88)
-|++|.+++ +|+++|.+.+...|++-
T Consensus 21 De~~~~~~~~~~gi~~~~~~~g~i~g~~~~~~~~k~K 57 (95)
T PF07178_consen 21 DEFIPALILFVIGILSGHFLIGLILGIVLWWGYRKFK 57 (95)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 366666655 45556667777777763
No 27
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=34.89 E-value=67 Score=20.95 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcee
Q 034649 14 LFAAVGVAVGICGMQLVRNICINPEVR 40 (88)
Q Consensus 14 L~~~vg~a~~~a~~~~~R~l~~nPdVr 40 (88)
.++.+++++++.+.|..|.. .|+|+
T Consensus 9 ~iLgi~l~~~~~~Ly~lr~~--~Pev~ 33 (84)
T PF07444_consen 9 YILGIILILGGLALYFLRFF--RPEVS 33 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHH--Ccchh
Confidence 44556777777778877744 77764
No 28
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=34.40 E-value=66 Score=18.74 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=17.6
Q ss_pred CCCcchhHHHHHHHH-HHHHHHHHHHHhh
Q 034649 7 IRPEVFPLFAAVGVA-VGICGMQLVRNIC 34 (88)
Q Consensus 7 i~pel~PL~~~vg~a-~~~a~~~~~R~l~ 34 (88)
+|-.+|=.|+.+|++ ++..+.+.+|+..
T Consensus 6 lp~GVIlVF~lVglv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 6 LPGGVILVFCLVGLVGIGIVALFIYRKWQ 34 (43)
T ss_pred CCCCeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777654 4556677888764
No 29
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=34.06 E-value=55 Score=19.92 Aligned_cols=16 Identities=31% Similarity=0.216 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 034649 14 LFAAVGVAVGICGMQL 29 (88)
Q Consensus 14 L~~~vg~a~~~a~~~~ 29 (88)
+.+++|+++|+++.++
T Consensus 3 ~g~l~Ga~~Ga~~glL 18 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLL 18 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456677777666655
No 30
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=33.66 E-value=51 Score=21.42 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhcCCc
Q 034649 20 VAVGICGMQLVRNICINPE 38 (88)
Q Consensus 20 ~a~~~a~~~~~R~l~~nPd 38 (88)
+|++-.+|+.+|+|...++
T Consensus 55 vGlgyt~wF~~ryLL~~~~ 73 (90)
T PF14159_consen 55 VGLGYTGWFVYRYLLFAEN 73 (90)
T ss_pred HHHHHHhHHHHHHHcChHh
Confidence 4555679999999986543
No 31
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=31.29 E-value=77 Score=17.98 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=20.9
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHH
Q 034649 5 RWIRPEVFPLFAAVGVAVGICGMQLV 30 (88)
Q Consensus 5 ~wi~pel~PL~~~vg~a~~~a~~~~~ 30 (88)
.|+|.=++||...+-=|+.++..++.
T Consensus 8 s~LPsI~VPlVGlvfPai~Mallf~y 33 (38)
T PRK11877 8 SWLPWIFVPLVGWVFPAVFMVLLGRY 33 (38)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 47888889999999888888876653
No 32
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=30.89 E-value=21 Score=22.64 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=11.7
Q ss_pred hhhhhhhHHHHHhhcCC-CCc
Q 034649 57 GEKYSEHFLRKYVRNKT-PEI 76 (88)
Q Consensus 57 G~~y~~h~~R~~~~~~~-p~i 76 (88)
++..++|+=+.|-.+.. |.|
T Consensus 36 ~eeQr~~re~ff~~~~~l~~i 56 (66)
T PF10907_consen 36 SEEQRAHREKFFGGDKDLRDI 56 (66)
T ss_pred hHHHHHHHHHHcCCCCCCCCC
Confidence 45566776666665555 444
No 33
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=30.59 E-value=88 Score=18.54 Aligned_cols=10 Identities=20% Similarity=0.757 Sum_probs=7.6
Q ss_pred chhHHHHHHH
Q 034649 11 VFPLFAAVGV 20 (88)
Q Consensus 11 l~PL~~~vg~ 20 (88)
++|+|+++|+
T Consensus 6 iV~i~iv~~l 15 (50)
T PF12606_consen 6 IVSIFIVMGL 15 (50)
T ss_pred HHHHHHHHHH
Confidence 6788887776
No 34
>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins.
Probab=30.47 E-value=77 Score=20.80 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 034649 11 VFPLFAAVGVAVGICGMQLVRN 32 (88)
Q Consensus 11 l~PL~~~vg~a~~~a~~~~~R~ 32 (88)
.+|+-+++|+++|..-|...|.
T Consensus 74 ~i~~t~~vgvs~glPLyL~lRe 95 (97)
T PF11196_consen 74 YIVLTFFVGVSFGLPLYLYLRE 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6888999999999998888874
No 35
>PRK11367 hypothetical protein; Provisional
Probab=29.22 E-value=17 Score=30.19 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 034649 11 VFPLFAAVGVAVGICGMQLVRNI 33 (88)
Q Consensus 11 l~PL~~~vg~a~~~a~~~~~R~l 33 (88)
..=++|++|++.++++||+..++
T Consensus 6 a~gVIVaLga~wtGgsWYTGk~i 28 (476)
T PRK11367 6 ATGVIVALAVIWGGGTWYTGTQI 28 (476)
T ss_pred hhhhhhhhhhhhccccceechHH
Confidence 46678999999999999999876
No 36
>COG3766 Predicted membrane protein [Function unknown]
Probab=29.15 E-value=47 Score=23.64 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCceeEecCCccccch
Q 034649 15 FAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVL 51 (88)
Q Consensus 15 ~~~vg~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~v~ 51 (88)
..++|+.+-+.+|+..|.++.|=|.++...|...|.+
T Consensus 79 Wg~~~~vvqLl~f~i~~~l~p~l~~~I~ngn~AaG~~ 115 (133)
T COG3766 79 WGAIALVVQLLVFFIVRLLMPDLDEKIENGNVAAGFI 115 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccHHHHhcCcchHHHH
Confidence 3568888899999999999998888888777776644
No 37
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=27.73 E-value=46 Score=27.43 Aligned_cols=26 Identities=19% Similarity=0.043 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCCcee
Q 034649 11 VFPLFAAVGVAVGICGMQLVRNICINPEVR 40 (88)
Q Consensus 11 l~PL~~~vg~a~~~a~~~~~R~l~~nPdVr 40 (88)
|+-+++++|+|.|+++||... ||+++
T Consensus 8 l~~~~l~~~~~ygG~v~yA~~----n~~f~ 33 (582)
T PF09731_consen 8 LLYTTLLGGVGYGGGVYYAKQ----NDNFR 33 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhhc----ChHHH
Confidence 566778888888888888765 65554
No 38
>PLN02949 transferase, transferring glycosyl groups
Probab=27.65 E-value=73 Score=25.89 Aligned_cols=40 Identities=18% Similarity=0.425 Sum_probs=25.9
Q ss_pred CCCCCCcchhHHHHHHHHH--HHHHHHHHHHhhcCCceeEecCC
Q 034649 4 NRWIRPEVFPLFAAVGVAV--GICGMQLVRNICINPEVRVTKQN 45 (88)
Q Consensus 4 ~~wi~pel~PL~~~vg~a~--~~a~~~~~R~l~~nPdVr~~k~~ 45 (88)
+.|+++.++|-|-.+|-.+ ..++|..+++ .-|+|-+|--.
T Consensus 107 ~~~~~~~~~~~~t~~~~~~~~~~l~~~~~~~--~~p~v~vDt~~ 148 (463)
T PLN02949 107 RKWIEEETYPRFTMIGQSLGSVYLAWEALCK--FTPLYFFDTSG 148 (463)
T ss_pred ccccccccCCceehHHHHHHHHHHHHHHHHh--cCCCEEEeCCC
Confidence 6899999999955555444 3444444443 35778777655
No 39
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.05 E-value=83 Score=22.77 Aligned_cols=20 Identities=40% Similarity=0.391 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 034649 14 LFAAVGVAVGICGMQLVRNI 33 (88)
Q Consensus 14 L~~~vg~a~~~a~~~~~R~l 33 (88)
|++++|+++|+++.|+++..
T Consensus 4 i~~i~~~~vG~~~G~~~~~~ 23 (201)
T PF12072_consen 4 IIAIVALIVGIGIGYLVRKK 23 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444
No 40
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=26.33 E-value=69 Score=21.94 Aligned_cols=22 Identities=27% Similarity=0.120 Sum_probs=14.5
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHh
Q 034649 12 FPLF-AAVGVAVGICGMQLVRNI 33 (88)
Q Consensus 12 ~PL~-~~vg~a~~~a~~~~~R~l 33 (88)
|-|+ |++++|...+.|+++|+.
T Consensus 23 ItLasVvvavGl~aGLfFcvR~~ 45 (106)
T PF14654_consen 23 ITLASVVVAVGLFAGLFFCVRNS 45 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 4444 345667777788898874
No 41
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=26.31 E-value=97 Score=22.38 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCCCCcc-hhHHHHHHHHHHHHHHHHHHHhh
Q 034649 5 RWIRPEV-FPLFAAVGVAVGICGMQLVRNIC 34 (88)
Q Consensus 5 ~wi~pel-~PL~~~vg~a~~~a~~~~~R~l~ 34 (88)
+-++|.+ .||+-+.|+++|+++-.+.++..
T Consensus 59 ~~~RpS~l~Plw~~~g~~LG~~tal~G~~~~ 89 (172)
T PF03232_consen 59 LRVRPSLLNPLWYVAGFALGALTALLGDKAA 89 (172)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 4456654 69999999999998887777653
No 42
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.93 E-value=77 Score=21.56 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=9.5
Q ss_pred hhhhhhhhhHHHHHhh
Q 034649 55 AEGEKYSEHFLRKYVR 70 (88)
Q Consensus 55 ~eG~~y~~h~~R~~~~ 70 (88)
.|=+.|++-.-.+|..
T Consensus 39 ~el~~yk~~V~~HF~~ 54 (128)
T PF06295_consen 39 QELEQYKQEVNDHFAQ 54 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4446777666655554
No 43
>PRK00523 hypothetical protein; Provisional
Probab=25.52 E-value=94 Score=19.89 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhc
Q 034649 21 AVGICGMQLVRNICI 35 (88)
Q Consensus 21 a~~~a~~~~~R~l~~ 35 (88)
+++..+||.+|+.+.
T Consensus 17 ~G~~~Gffiark~~~ 31 (72)
T PRK00523 17 VGGIIGYFVSKKMFK 31 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333456777776654
No 44
>PF12669 P12: Virus attachment protein p12 family
Probab=24.80 E-value=57 Score=19.58 Aligned_cols=15 Identities=7% Similarity=0.005 Sum_probs=7.2
Q ss_pred HHHHHHH-HHHHhhcC
Q 034649 22 VGICGMQ-LVRNICIN 36 (88)
Q Consensus 22 ~~~a~~~-~~R~l~~n 36 (88)
+.++++| ++|++.++
T Consensus 8 i~~~~~~v~~r~~~k~ 23 (58)
T PF12669_consen 8 ILAAVAYVAIRKFIKD 23 (58)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444 34666544
No 45
>PLN02777 photosystem I P subunit (PSI-P)
Probab=24.72 E-value=61 Score=23.87 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhcCCc
Q 034649 20 VAVGICGMQLVRNICINPE 38 (88)
Q Consensus 20 ~a~~~a~~~~~R~l~~nPd 38 (88)
+|++-.+||.+|+|+..++
T Consensus 130 VGigYs~WF~yRyLLfke~ 148 (167)
T PLN02777 130 VGIGYTGWFAYKNLVFKPD 148 (167)
T ss_pred hhhhhhhhhhhhHhcCccc
Confidence 3455569999999987654
No 46
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome. The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].
Probab=23.85 E-value=81 Score=23.48 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 034649 11 VFPLFAAVGVAVGICGMQLVRNI 33 (88)
Q Consensus 11 l~PL~~~vg~a~~~a~~~~~R~l 33 (88)
.+|++++.|++...+.+++.+.+
T Consensus 150 FiPl~i~~~~~~~~~~~~~i~~~ 172 (238)
T PF10269_consen 150 FIPLWIADGLAFLVCLYSIIMSI 172 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999998888876655
No 47
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=23.82 E-value=53 Score=20.31 Aligned_cols=28 Identities=21% Similarity=0.110 Sum_probs=20.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 034649 6 WIRPEVFPLFAAVGVAVGICGMQLVRNI 33 (88)
Q Consensus 6 wi~pel~PL~~~vg~a~~~a~~~~~R~l 33 (88)
..+..-+-|.+++=+.+|+++|.++|.+
T Consensus 34 k~pVgp~~L~l~iFVV~Gs~ifqiir~i 61 (63)
T PF06624_consen 34 KYPVGPWLLGLFIFVVCGSAIFQIIRSI 61 (63)
T ss_pred cCCcCHHHHhhhheeeEcHHHHHHHHHH
Confidence 3455556667777778888999999965
No 48
>PRK11089 PTS system glucose-specific transporter subunits IIBC; Provisional
Probab=23.75 E-value=56 Score=27.28 Aligned_cols=14 Identities=50% Similarity=0.921 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHH
Q 034649 12 FPLFAAVGVAVGIC 25 (88)
Q Consensus 12 ~PL~~~vg~a~~~a 25 (88)
+||++|||+|+|+|
T Consensus 59 LpllFavgia~g~a 72 (477)
T PRK11089 59 MPLIFAIGVALGFT 72 (477)
T ss_pred cHHHHHHHHHHHHh
Confidence 69999999998876
No 49
>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]
Probab=23.52 E-value=67 Score=21.75 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 034649 10 EVFPLFAAVGVAVGICGMQLVR 31 (88)
Q Consensus 10 el~PL~~~vg~a~~~a~~~~~R 31 (88)
.++||.+...+|+..++.|.+|
T Consensus 30 P~VPlG~l~t~aal~~g~y~~r 51 (100)
T KOG4431|consen 30 PLVPLGCLGTTAALTAGLYKFR 51 (100)
T ss_pred CCeeehHHHHHHHHHHHhhhhh
Confidence 5789999999999888888888
No 50
>TIGR02005 PTS-IIBC-alpha PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose.
Probab=23.51 E-value=53 Score=27.77 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHH
Q 034649 12 FPLFAAVGVAVGIC 25 (88)
Q Consensus 12 ~PL~~~vg~a~~~a 25 (88)
+||++|||+|+|+|
T Consensus 65 LpllFAvgia~Gla 78 (524)
T TIGR02005 65 MPLIFVVGLPIGLA 78 (524)
T ss_pred chHHHHHHHHHHhc
Confidence 79999999988765
No 51
>PF15312 JSRP: Junctional sarcoplasmic reticulum protein
Probab=23.51 E-value=1.5e+02 Score=18.61 Aligned_cols=22 Identities=32% Similarity=0.202 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 034649 14 LFAAVGVAVGICGMQLVRNICI 35 (88)
Q Consensus 14 L~~~vg~a~~~a~~~~~R~l~~ 35 (88)
|+++..+++-+.+|++.|.+..
T Consensus 15 LvlAslValL~s~fq~~~dav~ 36 (65)
T PF15312_consen 15 LVLASLVALLGSGFQLCHDAVR 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 6788889999999999996654
No 52
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=23.48 E-value=86 Score=18.77 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 034649 20 VAVGICGMQLVRNICINP 37 (88)
Q Consensus 20 ~a~~~a~~~~~R~l~~nP 37 (88)
+....|.+++.|+...++
T Consensus 22 gPA~~Al~~~~~~~~~~~ 39 (77)
T PF04854_consen 22 GPATAALYYVVRKWVRDE 39 (77)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 344556777888777776
No 53
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=23.28 E-value=83 Score=21.99 Aligned_cols=14 Identities=14% Similarity=-0.052 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 034649 18 VGVAVGICGMQLVR 31 (88)
Q Consensus 18 vg~a~~~a~~~~~R 31 (88)
+|+|++++.|++.+
T Consensus 29 ~~~g~gg~~~~~~~ 42 (162)
T PRK07021 29 AAAAGAGYSWWLSK 42 (162)
T ss_pred HHHHHHHHHHHhhc
Confidence 33344444444443
No 54
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=22.49 E-value=1.1e+02 Score=20.46 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=17.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 034649 10 EVFPLFAAVGVAVGICGMQLVR 31 (88)
Q Consensus 10 el~PL~~~vg~a~~~a~~~~~R 31 (88)
...|+|+++|++...++.++.-
T Consensus 33 ~~W~~FL~~Gi~~~~~Sl~~~~ 54 (94)
T PF14898_consen 33 RIWPIFLLAGIACIIASLFVSN 54 (94)
T ss_pred CcHHHHHHHHHHHHHHHHHHcc
Confidence 4679999999998888776543
No 55
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=22.32 E-value=1.3e+02 Score=20.86 Aligned_cols=19 Identities=11% Similarity=-0.017 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 034649 16 AAVGVAVGICGMQLVRNIC 34 (88)
Q Consensus 16 ~~vg~a~~~a~~~~~R~l~ 34 (88)
+++++++++.+|...|...
T Consensus 81 ~~~~i~~s~~~~~~~r~~~ 99 (136)
T cd00922 81 VLAFIGITGVIFGLQRAFV 99 (136)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5566777888899999776
No 56
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=22.21 E-value=1.6e+02 Score=16.72 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=10.5
Q ss_pred hHHHHHH--HHHHHHHHHHHHH
Q 034649 13 PLFAAVG--VAVGICGMQLVRN 32 (88)
Q Consensus 13 PL~~~vg--~a~~~a~~~~~R~ 32 (88)
|++..+| +|++++.+++.|.
T Consensus 32 p~~~~~g~llG~~~g~~~~~~~ 53 (55)
T PF09527_consen 32 PWFTLIGLLLGIAAGFYNVYRL 53 (55)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 4445556666664
No 57
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=22.00 E-value=1.3e+02 Score=21.09 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 034649 15 FAAVGVAVGICGMQLVRNICINP 37 (88)
Q Consensus 15 ~~~vg~a~~~a~~~~~R~l~~nP 37 (88)
.+++++++++++|...|.....|
T Consensus 80 ~~~~~i~~s~~l~~~~r~~~~~~ 102 (142)
T PF02936_consen 80 GVFIFIGFSVLLFIWQRSYVYPP 102 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 45677788888888999775543
No 58
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=21.98 E-value=1e+02 Score=18.18 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q 034649 18 VGVAVGICGMQLVRN 32 (88)
Q Consensus 18 vg~a~~~a~~~~~R~ 32 (88)
+|+++|.++|++.-+
T Consensus 11 ~av~iG~~ayyl~e~ 25 (47)
T PF11654_consen 11 FAVFIGTSAYYLYEN 25 (47)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455667777777654
No 59
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=21.93 E-value=1.5e+02 Score=18.20 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=21.5
Q ss_pred CCCCcchhHHHH-HHHHHHHHHHHHHHHhhcCCc
Q 034649 6 WIRPEVFPLFAA-VGVAVGICGMQLVRNICINPE 38 (88)
Q Consensus 6 wi~pel~PL~~~-vg~a~~~a~~~~~R~l~~nPd 38 (88)
|-+..=||-|++ +.+|+..+.+.-...+.+||.
T Consensus 2 w~Nv~RYpry~is~~lG~~~~~~~pl~~llk~p~ 35 (61)
T PF05421_consen 2 WDNVSRYPRYFISVMLGLFLIIFEPLKPLLKNPV 35 (61)
T ss_pred chHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 444445676554 666777777777777777764
No 60
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=21.89 E-value=64 Score=27.44 Aligned_cols=14 Identities=7% Similarity=0.180 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHH
Q 034649 12 FPLFAAVGVAVGIC 25 (88)
Q Consensus 12 ~PL~~~vg~a~~~a 25 (88)
+||++|||+|+|+|
T Consensus 63 LpllFAigiaiGla 76 (548)
T TIGR02003 63 LHILFALAIGGSWA 76 (548)
T ss_pred chHHHHHHHHHHHh
Confidence 79999999998876
No 61
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.69 E-value=1.4e+02 Score=21.39 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 034649 15 FAAVGVAVGICGMQLVRNIC 34 (88)
Q Consensus 15 ~~~vg~a~~~a~~~~~R~l~ 34 (88)
++.+|+.+|.++-+++-.|.
T Consensus 10 ~a~igLvvGi~IG~li~Rlt 29 (138)
T COG3105 10 YALIGLVVGIIIGALIARLT 29 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34455556655555554453
No 62
>PF05356 Phage_Coat_B: Phage Coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1QL1_A 2XKM_A 4IFM_A 1QL2_A 1IFM_A 2KLV_A 1IFN_A 2IFN_A 3IFM_A 2KSJ_A ....
Probab=21.62 E-value=1.5e+02 Score=19.41 Aligned_cols=19 Identities=26% Similarity=0.015 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 034649 15 FAAVGVAVGICGMQLVRNI 33 (88)
Q Consensus 15 ~~~vg~a~~~a~~~~~R~l 33 (88)
.+.+-+++.+.+|.++|+.
T Consensus 65 gvl~~laVaGlI~~l~RKa 83 (83)
T PF05356_consen 65 GVLVILAVAGLIYSLLRKA 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4456677888899999974
No 63
>MTH00030 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=21.26 E-value=1.3e+02 Score=20.68 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=16.3
Q ss_pred CCCcchhHHHHHHHHHHHHH--HHHHHHh
Q 034649 7 IRPEVFPLFAAVGVAVGICG--MQLVRNI 33 (88)
Q Consensus 7 i~pel~PL~~~vg~a~~~a~--~~~~R~l 33 (88)
.+||..++++.+.+|++.++ ..+.+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 29 (123)
T MTH00030 1 MNPEFKTIFFSTLLGVGIILLLVSISFTL 29 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36888888777655555544 4444433
No 64
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=20.88 E-value=62 Score=21.76 Aligned_cols=35 Identities=11% Similarity=0.289 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCceeEecCCccccchh
Q 034649 12 FPLFAAVGVAVGICGMQLVRNICINPEVRVTKQNRAAGVLE 52 (88)
Q Consensus 12 ~PL~~~vg~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~v~~ 52 (88)
+|.++|+++++++++.-..- ..+++++.-++|+..
T Consensus 41 v~~~ici~~~~~~~~~lv~~------~f~ln~kyGe~GlmK 75 (96)
T PF13571_consen 41 VNQWICIGFGVVSGSLLVWQ------TFRLNRKYGEHGLMK 75 (96)
T ss_pred cchhhhHHHHHHHhhhhhee------eeeccccccHHHHHH
Confidence 46678888888887765433 456666655555443
No 65
>PRK06287 cobalt transport protein CbiN; Validated
Probab=20.82 E-value=1.8e+02 Score=19.35 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc
Q 034649 12 FPLFAAVGVAVGICGMQLVRNICI 35 (88)
Q Consensus 12 ~PL~~~vg~a~~~a~~~~~R~l~~ 35 (88)
|.+-.++|++++.+..+...++..
T Consensus 79 ~ilsgiiGv~i~l~l~~~~~~~l~ 102 (107)
T PRK06287 79 EIIAMVIGTLLVLALAYGVGKIFK 102 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667789999999999888877763
No 66
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=20.82 E-value=1.9e+02 Score=16.76 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=8.4
Q ss_pred chhHHHHHHHHHHHHH
Q 034649 11 VFPLFAAVGVAVGICG 26 (88)
Q Consensus 11 l~PL~~~vg~a~~~a~ 26 (88)
.+|.++.-|+++.+++
T Consensus 16 AmPvI~L~GF~~Vav~ 31 (42)
T PF09574_consen 16 AMPVIILSGFAAVAVA 31 (42)
T ss_pred cchHHHHhhHHHHHHH
Confidence 3566665555544443
No 67
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=20.70 E-value=1.3e+02 Score=19.44 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=12.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 034649 11 VFPLFAAVGVAVGICGMQLVRNI 33 (88)
Q Consensus 11 l~PL~~~vg~a~~~a~~~~~R~l 33 (88)
|.|||++.| .++|.+.+.+
T Consensus 30 LtPlfiisa----~lSwkLaK~i 48 (74)
T PF15086_consen 30 LTPLFIISA----VLSWKLAKAI 48 (74)
T ss_pred HhHHHHHHH----HHHHHHHHHH
Confidence 567776653 4677777755
No 68
>PHA02101 hypothetical protein
Probab=20.41 E-value=69 Score=21.50 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhcCCceeEecCCccccchhh
Q 034649 21 AVGICGMQLVRNICINPEVRVTKQNRAAGVLEN 53 (88)
Q Consensus 21 a~~~a~~~~~R~l~~nPdVr~~k~~r~~~v~~n 53 (88)
++|+|.|+-+-+...-|+|-++|-.+...-+++
T Consensus 60 ~vg~a~y~wi~~~~~~p~ve~t~ikpse~t~~r 92 (101)
T PHA02101 60 RVGLASYEWILARAFTPGVELTKVKPSEVTMSR 92 (101)
T ss_pred eeecchhhHHHHhcCCCCceEEEeccchhhhHH
Confidence 456666666655667899999998776654554
No 69
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=20.05 E-value=1.1e+02 Score=22.48 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q 034649 18 VGVAVGICGMQLVRN 32 (88)
Q Consensus 18 vg~a~~~a~~~~~R~ 32 (88)
+++|+++|+|++.|+
T Consensus 121 Lal~~~~~iyfl~~K 135 (194)
T PF11833_consen 121 LALGLGACIYFLNRK 135 (194)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566777889999987
No 70
>TIGR02161 napC_nirT periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family. Nearly every member of this subfamily is NapC, a predicted membrane-anchored four-heme c-type cytochrome that forms one component of the periplasmic nitrate reductase along with NapA, NapB, NapD, NapE, and NapF subunits. A single known exception at this time is NirT, which is instead a component of a nitrite reductase. This family excludes TorC subunits of trimethylamine N-oxide (TMAO) reductases.
Probab=20.05 E-value=1.3e+02 Score=21.88 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=17.8
Q ss_pred CCcchhHHH--HHHHHHHHHHHHHHH---HhhcCCceeEec
Q 034649 8 RPEVFPLFA--AVGVAVGICGMQLVR---NICINPEVRVTK 43 (88)
Q Consensus 8 ~pel~PL~~--~vg~a~~~a~~~~~R---~l~~nPdVr~~k 43 (88)
.|.++.|++ ++|+++|+++|..+- ..+.+|+.+.+=
T Consensus 11 k~~~~~~~~ll~~g~~~G~~~~~~~~~~~~~T~~~~fC~sC 51 (185)
T TIGR02161 11 RPSRLALGTLLLGGFVGGIVFWGGFNTGLEATNTEEFCISC 51 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHh
Confidence 455544433 334445554444332 345677776643
No 71
>PF08602 Mgr1: Mgr1-like, i-AAA protease complex subunit; InterPro: IPR013911 The Saccharomyces cerevisiae (Baker's yeast) Mgr1 protein has been shown to be required for mitochondrial viability in yeast lacking mitochondrial DNA. It is a mitochondrial inner membrane protein, which interacts with Yme1 and is a new subunit of the i-AAA protease complex [, ].
Probab=20.03 E-value=1.4e+02 Score=24.44 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHh
Q 034649 19 GVAVGICGMQLVRNI 33 (88)
Q Consensus 19 g~a~~~a~~~~~R~l 33 (88)
=+++|..++.-+|.|
T Consensus 64 Q~~~Gl~~~~r~R~l 78 (363)
T PF08602_consen 64 QTAVGLFCFRRARRL 78 (363)
T ss_pred HHHHHHHHHHHHHHh
Confidence 346666777777777
Done!