Query 034649
Match_columns 88
No_of_seqs 102 out of 214
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r5l_A Deazaflavin-dependent n 40.7 13 0.00046 24.3 1.8 50 30-85 60-109 (122)
2 3r5z_A Putative uncharacterize 32.7 10 0.00035 25.8 0.2 21 30-50 82-102 (145)
3 1v54_D Cytochrome C oxidase su 31.5 50 0.0017 22.6 3.6 22 16-37 85-106 (147)
4 3r5y_A Putative uncharacterize 29.1 10 0.00035 25.8 -0.3 22 29-50 83-104 (147)
5 1pfi_A Major coat protein of P 28.6 70 0.0024 17.9 3.2 19 15-33 28-46 (46)
6 2y69_D Cytochrome C oxidase su 23.8 80 0.0027 22.1 3.6 23 15-37 106-128 (169)
7 1jb0_I Photosystem 1 reaction 22.8 32 0.0011 18.7 1.0 26 5-30 8-33 (38)
8 2y69_J Cytochrome C oxidase po 21.5 96 0.0033 19.1 3.2 21 11-31 52-73 (80)
9 3h96_A F420-H2 dependent reduc 19.2 18 0.00061 24.4 -0.6 22 29-50 77-98 (143)
10 2h3o_A MERF; membrane protein, 18.2 70 0.0024 19.0 2.0 18 12-29 13-30 (61)
No 1
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=40.67 E-value=13 Score=24.31 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=29.3
Q ss_pred HHHhhcCCceeEecCCccccchhhhhhhhhhhhhHHHHHhhcCCCCcCccccccCC
Q 034649 30 VRNICINPEVRVTKQNRAAGVLENYAEGEKYSEHFLRKYVRNKTPEIMPKINSFFT 85 (88)
Q Consensus 30 ~R~l~~nPdVr~~k~~r~~~v~~n~~eG~~y~~h~~R~~~~~~~p~i~p~ln~~f~ 85 (88)
+|+|..||+|++....+...+.-.+-+++. ++..++++. +..|...+|-+
T Consensus 60 ~~Nl~A~P~v~v~~~~~~~~~~A~~l~~~E-r~~~~~~~~-----~~~p~y~~yq~ 109 (122)
T 3r5l_A 60 YLNLKANPKVQVQIKKEVLDLTARDATDEE-RAEYWPQLV-----TMYPSYQDYQS 109 (122)
T ss_dssp HHHHHHCCEEEEEETTEEEEEEEEECCHHH-HHHHHHHHH-----HHCTTCCCTTG
T ss_pred HHhhccCCcEEEEECCEEEEEEEEECCcch-HHHHHHHHH-----HHCcCHHHHHh
Confidence 789999999999876665433322222222 245555565 33455555543
No 2
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=32.72 E-value=10 Score=25.76 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=16.4
Q ss_pred HHHhhcCCceeEecCCccccc
Q 034649 30 VRNICINPEVRVTKQNRAAGV 50 (88)
Q Consensus 30 ~R~l~~nPdVr~~k~~r~~~v 50 (88)
++||..||+|++....+...+
T Consensus 82 ~~Nl~A~p~v~v~~g~~~~~~ 102 (145)
T 3r5z_A 82 YHNIKAEPHVELRDGTEVGDY 102 (145)
T ss_dssp HHHHHHCCEEEEEETTEEEEE
T ss_pred HHHhhhCCcEEEEECCEEEEE
Confidence 589999999999877665433
No 3
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=31.48 E-value=50 Score=22.64 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 034649 16 AAVGVAVGICGMQLVRNICINP 37 (88)
Q Consensus 16 ~~vg~a~~~a~~~~~R~l~~nP 37 (88)
+++++|+++++|...|.....|
T Consensus 85 v~~~i~~s~~~f~~~r~~v~~p 106 (147)
T 1v54_D 85 AMFFIGFTALLLIWEKHYVYGP 106 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHccCC
Confidence 4566778888888889776543
No 4
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=29.14 E-value=10 Score=25.81 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=16.7
Q ss_pred HHHHhhcCCceeEecCCccccc
Q 034649 29 LVRNICINPEVRVTKQNRAAGV 50 (88)
Q Consensus 29 ~~R~l~~nPdVr~~k~~r~~~v 50 (88)
=++||..||+|++....+...+
T Consensus 83 W~~Nl~A~p~v~v~~g~~~~~~ 104 (147)
T 3r5y_A 83 WYFNLVADPRAQLRDKDAVLSV 104 (147)
T ss_dssp HHHHHHHCCEEEEEETTEEEEE
T ss_pred HHHhhhhCCcEEEEECCEEEEE
Confidence 3689999999999877665433
No 5
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=28.60 E-value=70 Score=17.92 Aligned_cols=19 Identities=26% Similarity=0.034 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 034649 15 FAAVGVAVGICGMQLVRNI 33 (88)
Q Consensus 15 ~~~vg~a~~~a~~~~~R~l 33 (88)
.+.+-+++.+.+|+++|++
T Consensus 28 GaLvil~VAGLiysm~RKa 46 (46)
T 1pfi_A 28 GALVILAVAGLIYSMLRKA 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3445567778899999873
No 6
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=23.77 E-value=80 Score=22.10 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 034649 15 FAAVGVAVGICGMQLVRNICINP 37 (88)
Q Consensus 15 ~~~vg~a~~~a~~~~~R~l~~nP 37 (88)
.+++++|+++++|...|.....|
T Consensus 106 gv~~~i~~s~~~f~~~r~~v~~p 128 (169)
T 2y69_D 106 AAMFFIGFTALLLIWEKHYVYGP 128 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHccCC
Confidence 34566778888888889776543
No 7
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=22.75 E-value=32 Score=18.74 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=20.5
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHH
Q 034649 5 RWIRPEVFPLFAAVGVAVGICGMQLV 30 (88)
Q Consensus 5 ~wi~pel~PL~~~vg~a~~~a~~~~~ 30 (88)
.|+|.=++||...+-=|+++|.+++.
T Consensus 8 ~~LPsI~VPlVglvfPai~Mallf~y 33 (38)
T 1jb0_I 8 SFLPWIFIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hhCChhhHhHHHHHHHHHHHHHHHHh
Confidence 46677789999988888888887764
No 8
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=21.46 E-value=96 Score=19.13 Aligned_cols=21 Identities=5% Similarity=-0.081 Sum_probs=12.4
Q ss_pred chhHHHHHHH-HHHHHHHHHHH
Q 034649 11 VFPLFAAVGV-AVGICGMQLVR 31 (88)
Q Consensus 11 l~PL~~~vg~-a~~~a~~~~~R 31 (88)
||+..+++++ |.+.+.|.++.
T Consensus 52 Ly~~t~~l~~~G~~~~ly~l~~ 73 (80)
T 2y69_J 52 LYRVTMTLCLGGTLYSLYCLGW 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655554 55556666655
No 9
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=19.22 E-value=18 Score=24.40 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=16.9
Q ss_pred HHHHhhcCCceeEecCCccccc
Q 034649 29 LVRNICINPEVRVTKQNRAAGV 50 (88)
Q Consensus 29 ~~R~l~~nPdVr~~k~~r~~~v 50 (88)
=+|||..||+|++....+...+
T Consensus 77 W~~Nl~A~p~v~v~~g~~~~~~ 98 (143)
T 3h96_A 77 WYYNLTTAGTAQVEVGTETYAV 98 (143)
T ss_dssp HHHHHHHHSEEEEEETTEEEEE
T ss_pred HHHhhhhCCcEEEEECCEEEEE
Confidence 3689999999999777666443
No 10
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=18.23 E-value=70 Score=18.99 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 034649 12 FPLFAAVGVAVGICGMQL 29 (88)
Q Consensus 12 ~PL~~~vg~a~~~a~~~~ 29 (88)
.|+.+++..++|++++..
T Consensus 13 tPvLvil~G~~Glsa~~~ 30 (61)
T 2h3o_A 13 TPVLVILLGVVGLSALTG 30 (61)
T ss_dssp ---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 577766666666665554
Done!