Query 034649
Match_columns 88
No_of_seqs 102 out of 214
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 07:55:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034649.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034649hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 37.7 16 0.0012 23.4 3.6 23 15-37 81-103 (144)
2 d3bzka2 a.60.2.6 (A:564-636) T 19.6 19 0.0014 20.2 1.1 15 4-18 6-20 (73)
3 d2gkea2 d.21.1.1 (A:131-274) D 17.8 28 0.0021 21.6 1.8 27 17-43 86-112 (144)
4 d1gpea1 c.3.1.2 (A:1-328,A:525 15.1 6.1 0.00044 27.5 -2.3 23 16-40 28-50 (391)
5 d1q90n_ f.23.27.1 (N:) PetN su 13.6 76 0.0056 15.1 3.2 21 13-33 3-23 (31)
6 d2pxrc1 a.73.1.1 (C:1-145) HIV 12.3 15 0.0011 23.8 -0.8 16 7-22 32-47 (145)
7 d1ubdc1 g.37.1.1 (C:295-322) Y 11.4 58 0.0042 15.3 1.5 12 63-74 17-28 (28)
8 d1st6a7 a.24.9.1 (A:719-855) V 9.9 72 0.0052 19.5 2.0 27 56-82 104-130 (137)
9 d2pw6a1 c.56.6.1 (A:14-271) Un 9.7 37 0.0027 22.9 0.5 12 10-21 221-232 (258)
10 d1y7ua1 d.38.1.1 (A:8-171) Acy 9.4 60 0.0044 20.0 1.5 29 39-67 113-145 (164)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=37.73 E-value=16 Score=23.41 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 034649 15 FAAVGVAVGICGMQLVRNICINP 37 (88)
Q Consensus 15 ~~~vg~a~~~a~~~~~R~l~~nP 37 (88)
.+++++|+++++|...|....+|
T Consensus 81 ~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 81 AAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 35677888888999999876553
No 2
>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.58 E-value=19 Score=20.19 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=11.4
Q ss_pred CCCCCCcchhHHHHH
Q 034649 4 NRWIRPEVFPLFAAV 18 (88)
Q Consensus 4 ~~wi~pel~PL~~~v 18 (88)
..+||||=|++.=-+
T Consensus 6 ~T~IHPESY~~a~kl 20 (73)
T d3bzka2 6 ASAVHPETYPLVQRI 20 (73)
T ss_dssp GSSCCGGGHHHHHHH
T ss_pred cCCCCCCchHHHHHH
Confidence 358999999976544
No 3
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]}
Probab=17.76 E-value=28 Score=21.60 Aligned_cols=27 Identities=19% Similarity=0.068 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCceeEec
Q 034649 17 AVGVAVGICGMQLVRNICINPEVRVTK 43 (88)
Q Consensus 17 ~vg~a~~~a~~~~~R~l~~nPdVr~~k 43 (88)
++|.|+++|++...++-..+.++.+.-
T Consensus 86 aCGTGA~Aaa~~~~~~~~~~~~i~V~~ 112 (144)
T d2gkea2 86 ACGSGACAAVAVGIMQGLLNNNVQVDL 112 (144)
T ss_dssp CCHHHHHHHHHHHHHTTSSCSEEEEEE
T ss_pred ccchhhHHHHHHHHHcCCCCCcEEEEE
Confidence 468888888877777655566665543
No 4
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}
Probab=15.15 E-value=6.1 Score=27.54 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcee
Q 034649 16 AAVGVAVGICGMQLVRNICINPEVR 40 (88)
Q Consensus 16 ~~vg~a~~~a~~~~~R~l~~nPdVr 40 (88)
++||.|.++|+ ++..|..+|+++
T Consensus 28 IIVGsG~aG~v--lA~rLae~~~~~ 50 (391)
T d1gpea1 28 IIAGGGLTGLT--VAAKLTENPKIK 50 (391)
T ss_dssp EEECCSHHHHH--HHHHHHTSTTCC
T ss_pred EEECcCHHHHH--HHHHHHHCCCCe
Confidence 45666666665 444587888643
No 5
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=13.60 E-value=76 Score=15.08 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 034649 13 PLFAAVGVAVGICGMQLVRNI 33 (88)
Q Consensus 13 PL~~~vg~a~~~a~~~~~R~l 33 (88)
|+++-++-|..+++|+..-.|
T Consensus 3 p~iv~~awaa~~atfsfslsl 23 (31)
T d1q90n_ 3 PAIVQIGWAATCVMFSFSLSL 23 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEhHHHHHHHhheeeEEE
Confidence 778888888888888765544
No 6
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=12.34 E-value=15 Score=23.79 Aligned_cols=16 Identities=38% Similarity=0.796 Sum_probs=12.6
Q ss_pred CCCcchhHHHHHHHHH
Q 034649 7 IRPEVFPLFAAVGVAV 22 (88)
Q Consensus 7 i~pel~PL~~~vg~a~ 22 (88)
+.||++|+|-+++-++
T Consensus 32 f~pEvipmF~ALSeg~ 47 (145)
T d2pxrc1 32 FSPEVIPMFSALSEGA 47 (145)
T ss_dssp TSTTHHHHHHHTCTTC
T ss_pred CCHHHHHHHHHHhCCC
Confidence 5699999999866543
No 7
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.42 E-value=58 Score=15.27 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=9.2
Q ss_pred hHHHHHhhcCCC
Q 034649 63 HFLRKYVRNKTP 74 (88)
Q Consensus 63 h~~R~~~~~~~p 74 (88)
+..|+.++++.|
T Consensus 17 saMRKHlhtHGP 28 (28)
T d1ubdc1 17 SAMRKHLHTHGP 28 (28)
T ss_dssp HHHHHHHGGGSC
T ss_pred HHHHHHhhccCC
Confidence 467888888766
No 8
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.88 E-value=72 Score=19.45 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=20.1
Q ss_pred hhhhhhhhHHHHHhhcCCCCcCccccc
Q 034649 56 EGEKYSEHFLRKYVRNKTPEIMPKINS 82 (88)
Q Consensus 56 eG~~y~~h~~R~~~~~~~p~i~p~ln~ 82 (88)
+.-...-+.+|+.+....|+|.|-.++
T Consensus 104 ~~l~~aV~~Vr~Al~~~~pd~l~~~~d 130 (137)
T d1st6a7 104 YRILGAVAKVREAFQPQEPDFPPPPPD 130 (137)
T ss_dssp TTHHHHHHHHHHHHSCCSSCSCCCCCC
T ss_pred HHHHHHHHHHHHHHccCCcccCCCCCc
Confidence 344455678899998888999876654
No 9
>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]}
Probab=9.73 E-value=37 Score=22.92 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=9.9
Q ss_pred cchhHHHHHHHH
Q 034649 10 EVFPLFAAVGVA 21 (88)
Q Consensus 10 el~PL~~~vg~a 21 (88)
-++||++++|+|
T Consensus 221 H~~Pl~~alGa~ 232 (258)
T d2pw6a1 221 HYLPLLYVLGAW 232 (258)
T ss_dssp TTHHHHHHHHTC
T ss_pred HHHHHHHHhhCC
Confidence 368999999974
No 10
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=9.42 E-value=60 Score=19.97 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=15.6
Q ss_pred eeEecCCccccch----hhhhhhhhhhhhHHHH
Q 034649 39 VRVTKQNRAAGVL----ENYAEGEKYSEHFLRK 67 (88)
Q Consensus 39 Vr~~k~~r~~~v~----~n~~eG~~y~~h~~R~ 67 (88)
|.+|.++++.++. ++.+|.+.|....-|+
T Consensus 113 Vavd~~g~p~~vp~l~p~t~eE~~~~~~a~~r~ 145 (164)
T d1y7ua1 113 VALSKENNPVPVPRVIPDTEEEKESHRIAVLRA 145 (164)
T ss_dssp EEECTTSCBCCCCEEECCSHHHHHHHHHHHHHH
T ss_pred EEECCCCCeeeCCccCCCCHHHHHHHHHHHHHH
Confidence 5667777766542 3455555555444343
Done!