Query 034650
Match_columns 88
No_of_seqs 11 out of 13
Neff 1.7
Searched_HMMs 29240
Date Mon Mar 25 07:56:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pd7_B MAD1; PAH2, SIN3, eukar 77.8 0.93 3.2E-05 24.8 1.3 15 61-75 2-16 (26)
2 2ef8_A C.ECOT38IS, putative tr 47.2 10 0.00035 20.7 1.7 51 8-58 25-78 (84)
3 3omt_A Uncharacterized protein 35.4 17 0.00057 19.7 1.4 50 8-59 23-73 (73)
4 1sjy_A MUTT/nudix family prote 35.2 23 0.0008 21.0 2.1 34 3-36 118-159 (159)
5 2xi8_A Putative transcription 32.6 24 0.00082 18.1 1.7 48 8-57 16-64 (66)
6 2q5c_A NTRC family transcripti 32.3 9.7 0.00033 25.9 0.0 45 34-82 147-191 (196)
7 2r1j_L Repressor protein C2; p 28.9 34 0.0012 17.5 1.9 29 20-50 33-61 (68)
8 1xqr_A HSPBP1 protein; armadil 27.9 47 0.0016 23.7 3.0 74 2-84 11-84 (296)
9 2kpj_A SOS-response transcript 27.3 28 0.00095 19.9 1.4 50 8-59 24-74 (94)
10 2ee4_A RHO GTPase activating p 26.9 1.2E+02 0.0041 20.1 4.8 28 16-43 81-108 (209)
11 1pbw_A Rhogap domain, phosphat 23.8 1.7E+02 0.0058 19.6 5.2 28 15-42 76-103 (216)
12 3aqb_A Component A of hexapren 23.5 1.4E+02 0.0047 21.4 4.8 55 10-68 66-129 (147)
13 1adr_A P22 C2 repressor; trans 22.5 49 0.0017 17.4 1.8 34 19-54 32-65 (76)
14 2vof_A BCL-2-related protein A 22.1 67 0.0023 21.3 2.8 13 37-49 99-111 (157)
15 3byi_A RHO GTPase activating p 21.6 1.6E+02 0.0056 19.5 4.6 28 16-43 90-117 (214)
16 3ngj_A Deoxyribose-phosphate a 21.2 28 0.00095 25.5 0.8 36 33-68 86-122 (239)
17 2w3l_A BCL2-XL, apoptosis regu 20.7 76 0.0026 20.5 2.8 10 37-46 90-99 (144)
18 1ku5_A HPHA, archaeal histon; 20.1 1.2E+02 0.0041 17.4 3.3 35 31-73 4-38 (70)
No 1
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=77.80 E-value=0.93 Score=24.82 Aligned_cols=15 Identities=40% Similarity=0.507 Sum_probs=12.7
Q ss_pred hccHHHHHHhHHHHH
Q 034650 61 IHNIQDLIDTAEYAL 75 (88)
Q Consensus 61 ~HNI~dLid~aey~L 75 (88)
+.||+.|++||||-=
T Consensus 2 ~~nvq~LLeAAeyLE 16 (26)
T 1pd7_B 2 RMNIQMLLEAADYLE 16 (26)
T ss_dssp CCSTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 469999999999953
No 2
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=47.23 E-value=10 Score=20.68 Aligned_cols=51 Identities=8% Similarity=-0.106 Sum_probs=30.2
Q ss_pred hhhhh-hchhHHHHHHHHHHHhcCCCccc--chHHHHHhHHHHHHHHHHhccch
Q 034650 8 TAVDS-KHQKRVLSLYRQILRSLNSPKLE--LSLAARLAKKAEARAIFMVGSEE 58 (88)
Q Consensus 8 TAedl-rnr~~VlSLYRqiLRslnSp~L~--L~~AarlaKKae~RaiF~~gseE 58 (88)
|.+|| +.-|.=-+.+.++.++-..|.+. ..++..||+.-+|..-++++.++
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~~~~v~~~~l~~~~~ 78 (84)
T 2ef8_A 25 SQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILLKDTY 78 (84)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHccccCCCHHHHHccch
Confidence 44455 33344446667777776666654 45666777766766655555443
No 3
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=35.40 E-value=17 Score=19.68 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=32.5
Q ss_pred hhhhh-hchhHHHHHHHHHHHhcCCCcccchHHHHHhHHHHHHHHHHhccchh
Q 034650 8 TAVDS-KHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEER 59 (88)
Q Consensus 8 TAedl-rnr~~VlSLYRqiLRslnSp~L~L~~AarlaKKae~RaiF~~gseEr 59 (88)
|-+|| +.=|.=-+-+.++.+.-..| ++..+.++|+--+|..-.+|+.++|
T Consensus 23 sq~~lA~~~gis~~~is~~e~g~~~~--~~~~l~~ia~~l~v~~~~l~~~~~r 73 (73)
T 3omt_A 23 TNLWLTETLDKNKTTVSKWCTNDVQP--SLETLFDIAEALNVDVRELIVSTKR 73 (73)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSSCC--CHHHHHHHHHHHTSCGGGGBCCCC-
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCC--CHHHHHHHHHHHCcCHHHHhcCCCC
Confidence 44555 44444456677777776555 5677888888888877666666553
No 4
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=35.21 E-value=23 Score=21.04 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=25.2
Q ss_pred cchhhhhhhhhch--------hHHHHHHHHHHHhcCCCcccc
Q 034650 3 GLIWATAVDSKHQ--------KRVLSLYRQILRSLNSPKLEL 36 (88)
Q Consensus 3 gliwaTAedlrnr--------~~VlSLYRqiLRslnSp~L~L 36 (88)
...|.+.+|+.+. .....++.+.++...+|.||.
T Consensus 118 ~~~W~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 159 (159)
T 1sjy_A 118 EASFVSREDFAQLYAAGQIRMYQTKLFYADALREKGFPALPV 159 (159)
T ss_dssp EEEEECHHHHHHHHHTTCBSCTHHHHHHHHHHHHHTCCCSCC
T ss_pred EEEEecHHHHHHhhhcccchhhhhHHHHHHHHhcCCCCCCcC
Confidence 4578888888332 245677889999999999984
No 5
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=32.58 E-value=24 Score=18.05 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=28.4
Q ss_pred hhhhh-hchhHHHHHHHHHHHhcCCCcccchHHHHHhHHHHHHHHHHhccc
Q 034650 8 TAVDS-KHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSE 57 (88)
Q Consensus 8 TAedl-rnr~~VlSLYRqiLRslnSp~L~L~~AarlaKKae~RaiF~~gse 57 (88)
|.+|+ +.-|.=-+.+.++.+.-..| +.....++|+.-+|..-.+++.+
T Consensus 16 s~~~lA~~~gis~~~i~~~e~g~~~~--~~~~l~~i~~~l~~~~~~l~~~~ 64 (66)
T 2xi8_A 16 SQSELAALLEVSRQTINGIEKNKYNP--SLQLALKIAYYLNTPLEDIFQWQ 64 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSCCC--CHHHHHHHHHHTTSCHHHHEEEC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCC--CHHHHHHHHHHHCcCHHHHhCCC
Confidence 34455 33344455667777766555 45667778877776655555443
No 6
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=32.28 E-value=9.7 Score=25.89 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=33.7
Q ss_pred ccchHHHHHhHHHHHHHHHHhccchhhhccHHHHHHhHHHHHHHhhcCC
Q 034650 34 LELSLAARLAKKAEARAIFMVGSEERSIHNIQDLIDTAEYALSLLKEGK 82 (88)
Q Consensus 34 L~L~~AarlaKKae~RaiF~~gseErS~HNI~dLid~aey~Ls~L~~G~ 82 (88)
+.=+.+.++|+|.+..++|+-.++| .|++-++.|...+...++|.
T Consensus 147 VG~~~~~~~A~~~Gl~~vli~sg~e----SI~~Ai~eA~~l~~~~~~~~ 191 (196)
T 2q5c_A 147 VSGKTVTDEAIKQGLYGETINSGEE----SLRRAIEEALNLIEVRNEGH 191 (196)
T ss_dssp EECHHHHHHHHHTTCEEEECCCCHH----HHHHHHHHHHHHHHHHC---
T ss_pred ECCHHHHHHHHHcCCcEEEEecCHH----HHHHHHHHHHHHHHHHHhcc
Confidence 4456889999999999999876565 46778888888888888775
No 7
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=28.93 E-value=34 Score=17.52 Aligned_cols=29 Identities=21% Similarity=0.084 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCCcccchHHHHHhHHHHHHH
Q 034650 20 SLYRQILRSLNSPKLELSLAARLAKKAEARA 50 (88)
Q Consensus 20 SLYRqiLRslnSp~L~L~~AarlaKKae~Ra 50 (88)
+-+.++.+.-..| +.....++|+.-+|..
T Consensus 33 ~~i~~~e~g~~~~--~~~~l~~i~~~l~~~~ 61 (68)
T 2r1j_L 33 VAISQWERSETEP--NGENLLALSKALQCSP 61 (68)
T ss_dssp HHHHHHHTTSSCC--BHHHHHHHHHHTTSCH
T ss_pred HHHHHHHcCCCCC--CHHHHHHHHHHhCCCH
Confidence 4445555554444 3445555555544443
No 8
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=27.92 E-value=47 Score=23.65 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=34.7
Q ss_pred CcchhhhhhhhhchhHHHHHHHHHHHhcCCCcccchHHHHHhHHHHHHHHHHhccchhhhccHHHHHHhHHHHHHHhhcC
Q 034650 2 KGLIWATAVDSKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEERSIHNIQDLIDTAEYALSLLKEG 81 (88)
Q Consensus 2 kgliwaTAedlrnr~~VlSLYRqiLRslnSp~L~L~~AarlaKKae~RaiF~~gseErS~HNI~dLid~aey~Ls~L~~G 81 (88)
.|+-|..+- +++.+-...+.+.++.-|.+|.=+--.+++..-..|.| +..+.++.+|++--+.+-.+.+-|
T Consensus 11 ~~~~~~~~~-~~~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k--------~~Al~~L~~lv~~~dna~~~~~~G 81 (296)
T 1xqr_A 11 SGLVPRGSH-MRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQER--------EGALELLADLCENMDNAADFCQLS 81 (296)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHH--------HHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred cchHHHHHH-HcCCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHH--------HHHHHHHHHHHhChhhHHHHHHcC
Confidence 477887543 46667778888999999999842222233211111111 234445555555444555555555
Q ss_pred CCC
Q 034650 82 KIP 84 (88)
Q Consensus 82 ~iP 84 (88)
-+|
T Consensus 82 ~l~ 84 (296)
T 1xqr_A 82 GMH 84 (296)
T ss_dssp HHH
T ss_pred CHH
Confidence 444
No 9
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=27.32 E-value=28 Score=19.90 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=27.9
Q ss_pred hhhhh-hchhHHHHHHHHHHHhcCCCcccchHHHHHhHHHHHHHHHHhccchh
Q 034650 8 TAVDS-KHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEER 59 (88)
Q Consensus 8 TAedl-rnr~~VlSLYRqiLRslnSp~L~L~~AarlaKKae~RaiF~~gseEr 59 (88)
|.+|| +.-|.--+.+.++.+.-..| .+....++|+.-+|..-++++.++.
T Consensus 24 sq~~lA~~~gis~~~is~~e~G~~~p--~~~~l~~ia~~l~v~~~~l~~~~~~ 74 (94)
T 2kpj_A 24 TQLEIAKSIGVSPQTFNTWCKGIAIP--RMGKVQALADYFNINKSDLIEDKKL 74 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSCCC--CHHHHHHHHHHHTCCTHHHHSCSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHhCCCCC--CHHHHHHHHHHHCcCHHHHhcCCCc
Confidence 33444 33344445556666665555 3556677777777666666655543
No 10
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=26.90 E-value=1.2e+02 Score=20.11 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHhcCCCcccchHHHHHh
Q 034650 16 KRVLSLYRQILRSLNSPKLELSLAARLA 43 (88)
Q Consensus 16 ~~VlSLYRqiLRslnSp~L~L~~Aarla 43 (88)
-.|-|+..+.||.|..|=+|..+-..+-
T Consensus 81 ~~va~lLK~flreLPePLi~~~l~~~~~ 108 (209)
T 2ee4_A 81 NAVAGALKAFFADLPDPLIPYSLHPELL 108 (209)
T ss_dssp HHHHHHHHHHHHHSSSCSSCTTTHHHHH
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHH
Confidence 3678999999999999999987665543
No 11
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=23.81 E-value=1.7e+02 Score=19.60 Aligned_cols=28 Identities=11% Similarity=0.286 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHhcCCCcccchHHHHH
Q 034650 15 QKRVLSLYRQILRSLNSPKLELSLAARL 42 (88)
Q Consensus 15 r~~VlSLYRqiLRslnSp~L~L~~Aarl 42 (88)
--.|-|+..++||.|-.|=+|..+-..+
T Consensus 76 v~~va~lLK~flReLPePLl~~~ly~~~ 103 (216)
T 1pbw_A 76 VHVLADAFKRYLLDLPNPVIPAAVYSEM 103 (216)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 3467899999999999999998876654
No 12
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=23.52 E-value=1.4e+02 Score=21.41 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=39.1
Q ss_pred hhhhchhHHH------HHHHHHHHhcCCCcccch---HHHHHhHHHHHHHHHHhccchhhhccHHHHH
Q 034650 10 VDSKHQKRVL------SLYRQILRSLNSPKLELS---LAARLAKKAEARAIFMVGSEERSIHNIQDLI 68 (88)
Q Consensus 10 edlrnr~~Vl------SLYRqiLRslnSp~L~L~---~AarlaKKae~RaiF~~gseErS~HNI~dLi 68 (88)
+++|+| .|| |+|-++|. -|....- ++.-..+=.|.+....--.||..+|||..=|
T Consensus 66 ~n~K~r-iVLaGD~~Sa~fY~lLa---~~~~~~~i~~lS~aI~eVNE~K~sl~~~~~~~~~~~~~~~~ 129 (147)
T 3aqb_A 66 EDNKDS-FVLSTDVLSALFYKYLS---QPFYQHDFLVLTDCVSRINELKSIRATITDEIALHNINKQI 129 (147)
T ss_dssp TTTHHH-HHHHHHHHHHHHHHHTB---TTBCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred cCCccc-eEeehHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhh
Confidence 456777 545 57888876 3444443 6666667778888888889999999998655
No 13
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=22.54 E-value=49 Score=17.35 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCcccchHHHHHhHHHHHHHHHHh
Q 034650 19 LSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMV 54 (88)
Q Consensus 19 lSLYRqiLRslnSp~L~L~~AarlaKKae~RaiF~~ 54 (88)
-+.+.++.+.-..| +.....++|+.-+|..-+++
T Consensus 32 ~~~i~~~e~g~~~~--~~~~l~~ia~~l~~~~~~l~ 65 (76)
T 1adr_A 32 NVAISQWERSETEP--NGENLLALSKALQCSPDYLL 65 (76)
T ss_dssp HHHHHHHHTTSSCC--CHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHcCCCCC--CHHHHHHHHHHHCcCHHHHh
Confidence 34555566654444 34456666666665544444
No 14
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=22.08 E-value=67 Score=21.31 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=9.8
Q ss_pred hHHHHHhHHHHHH
Q 034650 37 SLAARLAKKAEAR 49 (88)
Q Consensus 37 ~~AarlaKKae~R 49 (88)
.||+.||++.-.+
T Consensus 99 ~F~g~la~~~~~~ 111 (157)
T 2vof_A 99 AFGGVLLKKLKQE 111 (157)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 6899999987533
No 15
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=21.58 E-value=1.6e+02 Score=19.50 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhcCCCcccchHHHHHh
Q 034650 16 KRVLSLYRQILRSLNSPKLELSLAARLA 43 (88)
Q Consensus 16 ~~VlSLYRqiLRslnSp~L~L~~Aarla 43 (88)
-.|-|+..++||.|..|=+|..+-..+-
T Consensus 90 h~va~lLK~flreLPePLl~~~l~~~~~ 117 (214)
T 3byi_A 90 HVVTGALKMFFRELPEPLFPYSFFEQFV 117 (214)
T ss_dssp HHHHHHHHHHHHHSSSCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 4588999999999999999988766543
No 16
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=21.23 E-value=28 Score=25.53 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=28.8
Q ss_pred cccchHHHHHhHHHHHHHHHHhccchhhhc-cHHHHH
Q 034650 33 KLELSLAARLAKKAEARAIFMVGSEERSIH-NIQDLI 68 (88)
Q Consensus 33 ~L~L~~AarlaKKae~RaiF~~gseErS~H-NI~dLi 68 (88)
.+|+|-..--+|-+|++.-.-.|++|.++| ||..|.
T Consensus 86 gFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk 122 (239)
T 3ngj_A 86 GFPLGATPSEVKAYETKVAVEQGAEEVDMVINIGMVK 122 (239)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHH
T ss_pred ccCCCCCchHHHHHHHHHHHHcCCCEEEEEeehHHhc
Confidence 356666566778889999999999999998 887654
No 17
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=20.73 E-value=76 Score=20.54 Aligned_cols=10 Identities=0% Similarity=0.172 Sum_probs=6.4
Q ss_pred hHHHHHhHHH
Q 034650 37 SLAARLAKKA 46 (88)
Q Consensus 37 ~~AarlaKKa 46 (88)
.||+.||+|.
T Consensus 90 ~F~g~la~~~ 99 (144)
T 2w3l_A 90 EFGGVMCVES 99 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4677777663
No 18
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=20.10 E-value=1.2e+02 Score=17.43 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=22.0
Q ss_pred CCcccchHHHHHhHHHHHHHHHHhccchhhhccHHHHHHhHHH
Q 034650 31 SPKLELSLAARLAKKAEARAIFMVGSEERSIHNIQDLIDTAEY 73 (88)
Q Consensus 31 Sp~L~L~~AarlaKKae~RaiF~~gseErS~HNI~dLid~aey 73 (88)
+|.||.+--.|++|++ |....|-.=+..|-+.+++
T Consensus 4 ~~~lp~a~v~Rl~r~~--------g~~ris~~a~~~l~e~~~~ 38 (70)
T 1ku5_A 4 MGELPIAPVDRLIRKA--------GAERVSEQAAKVLAEYLEE 38 (70)
T ss_dssp -CCSCHHHHHHHHHHT--------TCSEECHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHc--------CcceeCHHHHHHHHHHHHH
Confidence 5788888888999975 4445554445555554443
Done!