Query 034650
Match_columns 88
No_of_seqs 11 out of 13
Neff 1.7
Searched_HMMs 13730
Date Mon Mar 25 07:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034650.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034650hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iqca1 a.3.1.5 (A:1-150) Di-h 58.2 1.5 0.00011 28.0 0.9 60 15-74 83-148 (150)
2 d1f5na1 a.114.1.1 (A:284-583) 52.1 8.3 0.0006 23.9 3.8 21 16-36 8-28 (300)
3 d2r1jl1 a.35.1.2 (L:3-68) P22 37.0 9.3 0.00068 19.9 1.9 47 8-56 18-65 (66)
4 d1i5na_ a.24.10.3 (A:) Chemota 33.7 15 0.0011 21.1 2.6 25 60-84 55-79 (128)
5 d1tqga_ a.24.10.3 (A:) Chemota 32.0 17 0.0013 20.3 2.6 25 60-84 56-80 (105)
6 d1roaa_ d.17.1.2 (A:) Cystatin 28.6 16 0.0012 21.1 2.2 26 55-81 2-27 (111)
7 d1eb7a1 a.3.1.5 (A:1-164) Di-h 25.8 1.5 0.00011 28.7 -3.4 59 16-74 96-162 (164)
8 d1nmla1 a.3.1.5 (A:1-166) Di-h 25.1 5.5 0.0004 25.8 -0.6 61 15-75 95-163 (166)
9 d2pq7a1 a.211.1.1 (A:1-217) Pr 24.1 81 0.0059 19.8 5.8 66 16-84 14-97 (217)
10 d1ngka_ a.1.1.1 (A:) Protozoan 23.2 62 0.0045 18.2 5.0 41 14-54 82-122 (126)
No 1
>d1iqca1 a.3.1.5 (A:1-150) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}
Probab=58.21 E-value=1.5 Score=27.99 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHhcCCCc-ccc---hHHHHHhHHHHHHHHH--HhccchhhhccHHHHHHhHHHH
Q 034650 15 QKRVLSLYRQILRSLNSPK-LEL---SLAARLAKKAEARAIF--MVGSEERSIHNIQDLIDTAEYA 74 (88)
Q Consensus 15 r~~VlSLYRqiLRslnSp~-L~L---~~AarlaKKae~RaiF--~~gseErS~HNI~dLid~aey~ 74 (88)
.|++-+|..|++..|.+|. ... -+..+|.+-.+-+..| .||+++.+..||.+-|.+=+.+
T Consensus 83 DGr~~~L~~Qa~~pi~~~~Em~~~~~~~~~~l~~~~~Y~~~F~~afg~~~i~~~~i~~ALaaferT 148 (150)
T d1iqca1 83 DGRAKDLKEQAAGPIANPKEMASTHEIAEKVVASMPQYRERFKKVFGSDEVTIDRITTAIAQFEET 148 (150)
T ss_dssp TCCBSSHHHHHHHHHHCTTTTCCCHHHHHHHHHTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHT
T ss_pred cCCcccHHHHHhhhhcCcccccCCHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 4677789999999987775 222 2456676666777777 4688999999999877665543
No 2
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.06 E-value=8.3 Score=23.95 Aligned_cols=21 Identities=24% Similarity=0.244 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHhcCCCcccc
Q 034650 16 KRVLSLYRQILRSLNSPKLEL 36 (88)
Q Consensus 16 ~~VlSLYRqiLRslnSp~L~L 36 (88)
+....+-.+++.++|||.+|-
T Consensus 8 ~~l~~l~~~yv~ain~g~~P~ 28 (300)
T d1f5na1 8 PRLESLVLTYVNAISSGDLPC 28 (300)
T ss_dssp HHHHHHHHHHHHHHHHTSCCB
T ss_pred HHHHHHHHHHHHHHcCCCCCC
Confidence 445567788999999999985
No 3
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=36.98 E-value=9.3 Score=19.94 Aligned_cols=47 Identities=15% Similarity=0.023 Sum_probs=32.3
Q ss_pred hhhhh-hchhHHHHHHHHHHHhcCCCcccchHHHHHhHHHHHHHHHHhcc
Q 034650 8 TAVDS-KHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGS 56 (88)
Q Consensus 8 TAedl-rnr~~VlSLYRqiLRslnSp~L~L~~AarlaKKae~RaiF~~gs 56 (88)
|.+|+ +-=|.=-+-|.++.+.-+.| .+..+.++|+--+|---+++.+
T Consensus 18 tq~~lA~~~gvs~~~i~~~e~g~~~p--~~~~l~~ia~~l~v~~~~Ll~g 65 (66)
T d2r1jl1 18 RQAALGKMVGVSNVAISQWERSETEP--NGENLLALSKALQCSPDYLLKG 65 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSCC--BHHHHHHHHHHTTSCHHHHHHC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCCCC--CHHHHHHHHHHhCCCHHHHhcC
Confidence 55566 44455567788888988887 5677888888777665555544
No 4
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=33.65 E-value=15 Score=21.12 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.7
Q ss_pred hhccHHHHHHhHHHHHHHhhcCCCC
Q 034650 60 SIHNIQDLIDTAEYALSLLKEGKIP 84 (88)
Q Consensus 60 S~HNI~dLid~aey~Ls~L~~G~iP 84 (88)
.+..|.++....|..|+.+++|++|
T Consensus 55 gl~~i~~lah~lE~~l~~lr~~~~~ 79 (128)
T d1i5na_ 55 GFTILQETTHLMENLLDEARRGEMQ 79 (128)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4667889999999999999999987
No 5
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=31.99 E-value=17 Score=20.30 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.4
Q ss_pred hhccHHHHHHhHHHHHHHhhcCCCC
Q 034650 60 SIHNIQDLIDTAEYALSLLKEGKIP 84 (88)
Q Consensus 60 S~HNI~dLid~aey~Ls~L~~G~iP 84 (88)
.+..|.++....|-.|+.+++|++|
T Consensus 56 gl~~i~~lah~lE~~l~~~~~~~~~ 80 (105)
T d1tqga_ 56 GFSSMAKLCHTLENILDKARNSEIK 80 (105)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3567788899999999999999988
No 6
>d1roaa_ d.17.1.2 (A:) Cystatin D {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.65 E-value=16 Score=21.06 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=20.8
Q ss_pred ccchhhhccHHHHHHhHHHHHHHhhcC
Q 034650 55 GSEERSIHNIQDLIDTAEYALSLLKEG 81 (88)
Q Consensus 55 gseErS~HNI~dLid~aey~Ls~L~~G 81 (88)
|-+|.+.++ .++.++|++|++.+.+.
T Consensus 2 G~~~~~~~d-~~v~~~~~~Av~~~N~~ 27 (111)
T d1roaa_ 2 GIHATDLND-KSVQRALDFAISEYNKV 27 (111)
T ss_dssp CEEEECTTS-HHHHHHHHHHHHHHHHT
T ss_pred CCccCCCCC-HHHHHHHHHHHHHHHHh
Confidence 556777776 77999999999988754
No 7
>d1eb7a1 a.3.1.5 (A:1-164) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.83 E-value=1.5 Score=28.69 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhcCCC----cccchHHHHHhHHHHHHHHHHh----ccchhhhccHHHHHHhHHHH
Q 034650 16 KRVLSLYRQILRSLNSP----KLELSLAARLAKKAEARAIFMV----GSEERSIHNIQDLIDTAEYA 74 (88)
Q Consensus 16 ~~VlSLYRqiLRslnSp----~L~L~~AarlaKKae~RaiF~~----gseErS~HNI~dLid~aey~ 74 (88)
|++-||..|++-.|..| .-+..+.+||.+-.+-+..|-- ++++.+.+||.+-|.+=+-+
T Consensus 96 Gr~~~L~~Qa~~pi~~~~EM~~~~~~~~~rl~~~~~Y~~~F~~af~~~~~~i~~~~i~~ALaaf~rt 162 (164)
T d1eb7a1 96 GRAKDLGEQAKGPIQNSVEMHSTPQLVEQTLGSIPEYVDAFRKAFPKAGKPVSFDNMALAIEAYEAT 162 (164)
T ss_dssp EETTGGGTCCCCHHHHHHHHHSCHHHHHHHHHTCHHHHHHHHHHSCSCSSSSSHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHcccccChhhhcCCHHHHHHHHhcCHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Confidence 45555666655544333 1233467788777777777754 56779999998877665544
No 8
>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}
Probab=25.10 E-value=5.5 Score=25.76 Aligned_cols=61 Identities=20% Similarity=0.167 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHhcCCCc-c---cchHHHHHhHHHHHHHHHH--hccch--hhhccHHHHHHhHHHHH
Q 034650 15 QKRVLSLYRQILRSLNSPK-L---ELSLAARLAKKAEARAIFM--VGSEE--RSIHNIQDLIDTAEYAL 75 (88)
Q Consensus 15 r~~VlSLYRqiLRslnSp~-L---~L~~AarlaKKae~RaiF~--~gseE--rS~HNI~dLid~aey~L 75 (88)
.|++-+|-.|++-.|-+|. . +--+.+||.+-.+-+..|. ||+++ .+.+||.+-|.+=+-+|
T Consensus 95 DGr~~~Le~Qa~~pl~~~~EM~~~~~~~~~rl~~~~~Y~~~F~~af~~~~~~it~~~i~~Alaaf~rtl 163 (166)
T d1nmla1 95 DGRAADLAEQAKGPVQAGVEMSSTPDRVVATLKSMPEYIERFEDAFPGQENPVTFDNMAVAIEAYEATL 163 (166)
T ss_dssp EEEGGGHHHHCCCHHHHTTCCSSCHHHHHHHHHTCHHHHHHHHHHSTTCSSCCCHHHHHHHHHHHHHHC
T ss_pred ccccchHHHhhcccccCcccccCCHHHHHHHHhcCHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHHHHc
Confidence 4667778888877765552 2 2335567777667777775 56654 78899998777655443
No 9
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}
Probab=24.15 E-value=81 Score=19.83 Aligned_cols=66 Identities=21% Similarity=0.402 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHhcCCCcccchH-------HHHHhHHHHHH-HHHHhccchhhhccHHHH----------HHhHHHHHHH
Q 034650 16 KRVLSLYRQILRSLNSPKLELSL-------AARLAKKAEAR-AIFMVGSEERSIHNIQDL----------IDTAEYALSL 77 (88)
Q Consensus 16 ~~VlSLYRqiLRslnSp~L~L~~-------AarlaKKae~R-aiF~~gseErS~HNI~dL----------id~aey~Ls~ 77 (88)
..|++..+|.+...+.|+=.+.| |.++|++.++. .+..+++ -+|.|.+- ...++.+-.+
T Consensus 14 ~~i~~~v~~~~~~~~d~sHd~~H~~RV~~~A~~Ia~~e~~D~~vv~~AA---LLHDIg~~~~~~~~~~h~~~~a~~a~~~ 90 (217)
T d2pq7a1 14 REILNIVREAFKDYDDPAHDISHTFRVMENASEIASREKCDLQKAIIAA---LLHDIKRPHEALTGVDHAESGAEYASGL 90 (217)
T ss_dssp HHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHH---HHTTTTHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHH---HhhhhcchhccCCCcCHHHHHHHHHHHH
Confidence 47899999999999999888888 55556655442 2222222 46776542 2345666667
Q ss_pred hhcCCCC
Q 034650 78 LKEGKIP 84 (88)
Q Consensus 78 L~~G~iP 84 (88)
|.+-.+|
T Consensus 91 L~~~~~~ 97 (217)
T d2pq7a1 91 LPTMGFD 97 (217)
T ss_dssp GGGGTCC
T ss_pred HHhcCCC
Confidence 7766555
No 10
>d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}
Probab=23.19 E-value=62 Score=18.19 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHHhcCCCcccchHHHHHhHHHHHHHHHHh
Q 034650 14 HQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMV 54 (88)
Q Consensus 14 nr~~VlSLYRqiLRslnSp~L~L~~AarlaKKae~RaiF~~ 54 (88)
.+.+.|.++++.|+.+..+.++-..+.++-..++-=|-.|+
T Consensus 82 ~fd~wl~~~~~al~~~~~~~~~~~~~~~l~~~~~~~a~~mv 122 (126)
T d1ngka_ 82 ERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLV 122 (126)
T ss_dssp HHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999998888888777666665544444
Done!