BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034651
(88 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|15224217|ref|NP_179464.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|297836770|ref|XP_002886267.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp.
lyrata]
gi|4185140|gb|AAD08943.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|21592486|gb|AAM64436.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|26452632|dbj|BAC43399.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|28973515|gb|AAO64082.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|297332107|gb|EFH62526.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp.
lyrata]
gi|330251706|gb|AEC06800.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 88
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/88 (96%), Positives = 86/88 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
IKKNTRKPLGRILLKGDNITLMMNTGK
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNTGK 88
>gi|242051601|ref|XP_002454946.1| hypothetical protein SORBIDRAFT_03g001950 [Sorghum bicolor]
gi|241926921|gb|EES00066.1| hypothetical protein SORBIDRAFT_03g001950 [Sorghum bicolor]
Length = 88
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/88 (95%), Positives = 87/88 (98%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KKNTRK LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKNTRKSLGRILLKGDNITLMMNTGK 88
>gi|357145040|ref|XP_003573502.1| PREDICTED: small nuclear ribonucleoprotein E-like [Brachypodium
distachyon]
Length = 88
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/88 (94%), Positives = 87/88 (98%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KKNTRK LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKNTRKSLGRILLKGDNITLMMNTGK 88
>gi|225455956|ref|XP_002278114.1| PREDICTED: small nuclear ribonucleoprotein E [Vitis vinifera]
gi|297734216|emb|CBI15463.3| unnamed protein product [Vitis vinifera]
Length = 88
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/88 (94%), Positives = 87/88 (98%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA+TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MATTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KKNT+K LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKNTKKTLGRILLKGDNITLMMNTGK 88
>gi|313586495|gb|ADR71258.1| small nuclear ribonucleoprotein E [Hevea brasiliensis]
Length = 88
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/88 (95%), Positives = 86/88 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKD+RIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
+IKK TRK LGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKTRKSLGRILLKGDNITLMMNTGK 88
>gi|357146132|ref|XP_003573886.1| PREDICTED: small nuclear ribonucleoprotein E-like [Brachypodium
distachyon]
Length = 88
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/88 (94%), Positives = 87/88 (98%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKD+RIEGRIIGFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
+IKKNTRK LGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKNTRKSLGRILLKGDNITLMMNTGK 88
>gi|282848216|gb|ADB02889.1| small nuclear ribonucleoprotein polypeptide [Jatropha curcas]
Length = 88
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/88 (94%), Positives = 86/88 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KK TRK LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKTRKSLGRILLKGDNITLMMNSGK 88
>gi|195606896|gb|ACG25278.1| small nuclear ribonucleoprotein E [Zea mays]
gi|195611048|gb|ACG27354.1| small nuclear ribonucleoprotein E [Zea mays]
gi|413947730|gb|AFW80379.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/88 (93%), Positives = 87/88 (98%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KKNTRK LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKNTRKSLGRILLKGDNITLMMNSGK 88
>gi|195638708|gb|ACG38822.1| small nuclear ribonucleoprotein E [Zea mays]
gi|223945527|gb|ACN26847.1| unknown [Zea mays]
gi|414875728|tpg|DAA52859.1| TPA: Small nuclear ribonucleoprotein E isoform 1 [Zea mays]
gi|414875729|tpg|DAA52860.1| TPA: Small nuclear ribonucleoprotein E isoform 2 [Zea mays]
Length = 88
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/88 (93%), Positives = 87/88 (98%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KKNTRK LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKNTRKTLGRILLKGDNITLMMNSGK 88
>gi|356547766|ref|XP_003542280.1| PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max]
gi|255627911|gb|ACU14300.1| unknown [Glycine max]
Length = 88
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/88 (94%), Positives = 86/88 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
+IKK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSRKTLGRILLKGDNITLMMNTGK 88
>gi|356562483|ref|XP_003549500.1| PREDICTED: small nuclear ribonucleoprotein E [Glycine max]
gi|255628153|gb|ACU14421.1| unknown [Glycine max]
Length = 88
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/88 (94%), Positives = 85/88 (96%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
IKK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 SIKKKSRKTLGRILLKGDNITLMMNTGK 88
>gi|115443949|ref|NP_001045754.1| Os02g0126700 [Oryza sativa Japonica Group]
gi|41053075|dbj|BAD08019.1| putative small nuclear ribonucleoprotein polypeptide E [Oryza
sativa Japonica Group]
gi|113535285|dbj|BAF07668.1| Os02g0126700 [Oryza sativa Japonica Group]
gi|215686543|dbj|BAG88796.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189970|gb|EEC72397.1| hypothetical protein OsI_05681 [Oryza sativa Indica Group]
gi|222622094|gb|EEE56226.1| hypothetical protein OsJ_05214 [Oryza sativa Japonica Group]
Length = 88
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/88 (94%), Positives = 87/88 (98%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLD+AEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
+IKK+TRK LGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKDTRKSLGRILLKGDNITLMMNTGK 88
>gi|356508935|ref|XP_003523208.1| PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max]
gi|356516401|ref|XP_003526883.1| PREDICTED: small nuclear ribonucleoprotein E [Glycine max]
gi|388501720|gb|AFK38926.1| unknown [Lotus japonicus]
Length = 88
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/88 (93%), Positives = 86/88 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
>gi|18417572|ref|NP_567844.1| small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|297798942|ref|XP_002867355.1| hypothetical protein ARALYDRAFT_913445 [Arabidopsis lyrata subsp.
lyrata]
gi|21593343|gb|AAM65292.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51968366|dbj|BAD42875.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51968768|dbj|BAD43076.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51971773|dbj|BAD44551.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|88010920|gb|ABD38873.1| At4g30330 [Arabidopsis thaliana]
gi|297313191|gb|EFH43614.1| hypothetical protein ARALYDRAFT_913445 [Arabidopsis lyrata subsp.
lyrata]
gi|332660353|gb|AEE85753.1| small nuclear ribonucleoprotein E [Arabidopsis thaliana]
Length = 88
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/88 (94%), Positives = 84/88 (95%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
IKK TRKPLGRILLKGDNITLMMN GK
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNAGK 88
>gi|224117550|ref|XP_002331664.1| predicted protein [Populus trichocarpa]
gi|224143797|ref|XP_002325079.1| predicted protein [Populus trichocarpa]
gi|118483404|gb|ABK93602.1| unknown [Populus trichocarpa]
gi|222866513|gb|EEF03644.1| predicted protein [Populus trichocarpa]
gi|222874083|gb|EEF11214.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/88 (94%), Positives = 86/88 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
+IKK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 NIKKKSRKSLGRILLKGDNITLMMNTGK 88
>gi|449444030|ref|XP_004139778.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis
sativus]
gi|449444032|ref|XP_004139779.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis
sativus]
gi|449502888|ref|XP_004161771.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis
sativus]
Length = 88
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/88 (93%), Positives = 86/88 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KK +RK LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNSGK 88
>gi|226529493|ref|NP_001148430.1| small nuclear ribonucleoprotein E [Zea mays]
gi|195619228|gb|ACG31444.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/88 (92%), Positives = 87/88 (98%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEY+NLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYINLVLEDAEEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KKNTRK LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKNTRKSLGRILLKGDNITLMMNSGK 88
>gi|357455361|ref|XP_003597961.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|357491039|ref|XP_003615807.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|355487009|gb|AES68212.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|355517142|gb|AES98765.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|388498322|gb|AFK37227.1| unknown [Medicago truncatula]
Length = 88
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/88 (92%), Positives = 86/88 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KK ++K LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 88
>gi|449457115|ref|XP_004146294.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 1
[Cucumis sativus]
Length = 88
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/88 (92%), Positives = 86/88 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KK ++K LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNSGK 88
>gi|255563612|ref|XP_002522808.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
gi|223538046|gb|EEF39659.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
Length = 88
Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/88 (93%), Positives = 85/88 (96%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQ WLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQFWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
>gi|255629853|gb|ACU15277.1| unknown [Glycine max]
Length = 88
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/88 (92%), Positives = 85/88 (96%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQR+MTQPINLIFRFLQ KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQGKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KK +RK LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSRKTLGRILLKGDNITLMMNTGK 88
>gi|217071220|gb|ACJ83970.1| unknown [Medicago truncatula]
gi|388520551|gb|AFK48337.1| unknown [Medicago truncatula]
Length = 88
Score = 167 bits (423), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNL LDDAEEV
Sbjct: 1 MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLALDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KK ++K LGRILLKGDNITLMMNTGK
Sbjct: 61 NVKKKSKKTLGRILLKGDNITLMMNTGK 88
>gi|195615352|gb|ACG29506.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/88 (92%), Positives = 86/88 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KKNT K LGRILLKGDNITLMMN+GK
Sbjct: 61 NVKKNTPKTLGRILLKGDNITLMMNSGK 88
>gi|255581898|ref|XP_002531748.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
gi|223528618|gb|EEF30637.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
Length = 86
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/86 (94%), Positives = 84/86 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNT 86
++KK TRK LGRILLKGDNITLMMN+
Sbjct: 61 NVKKKTRKTLGRILLKGDNITLMMNS 86
>gi|116779305|gb|ABK21228.1| unknown [Picea sitchensis]
Length = 88
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/88 (89%), Positives = 85/88 (96%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA+T+VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEE+
Sbjct: 1 MATTRVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
+K+ T KPLGRILLKGDNITLMMNTGK
Sbjct: 61 SVKRKTHKPLGRILLKGDNITLMMNTGK 88
>gi|7269933|emb|CAB81026.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
Length = 86
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/86 (94%), Positives = 82/86 (95%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNT 86
IKK TRKPLGRILLKGDNITLMMN
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNA 86
>gi|168008828|ref|XP_001757108.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691606|gb|EDQ77967.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/86 (91%), Positives = 85/86 (98%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+TKVQRIMTQPINLIFRFLQSK+RIQIWLFEQKD+RIEGRIIGFDEYMNLVL++AEEV +
Sbjct: 2 ATKVQRIMTQPINLIFRFLQSKSRIQIWLFEQKDMRIEGRIIGFDEYMNLVLEEAEEVSL 61
Query: 63 KKNTRKPLGRILLKGDNITLMMNTGK 88
KKNTRKPLGRILLKGDNITLMMNTGK
Sbjct: 62 KKNTRKPLGRILLKGDNITLMMNTGK 87
>gi|168027770|ref|XP_001766402.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168048491|ref|XP_001776700.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671992|gb|EDQ58536.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682311|gb|EDQ68730.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/86 (93%), Positives = 84/86 (97%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+TKVQRIMTQPINLIFRFLQSK+RIQIWLFEQKDLRIEGRIIGFDEYMNLVLD+AEEV +
Sbjct: 2 ATKVQRIMTQPINLIFRFLQSKSRIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSL 61
Query: 63 KKNTRKPLGRILLKGDNITLMMNTGK 88
KK TRKPLGRILLKGDNITLMMNTGK
Sbjct: 62 KKKTRKPLGRILLKGDNITLMMNTGK 87
>gi|449457117|ref|XP_004146295.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 2
[Cucumis sativus]
Length = 86
Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/86 (91%), Positives = 84/86 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNT 86
++KK ++K LGRILLKGDNITLMMN+
Sbjct: 61 NVKKKSKKALGRILLKGDNITLMMNS 86
>gi|302765919|ref|XP_002966380.1| hypothetical protein SELMODRAFT_230895 [Selaginella
moellendorffii]
gi|302792841|ref|XP_002978186.1| hypothetical protein SELMODRAFT_176675 [Selaginella
moellendorffii]
gi|300154207|gb|EFJ20843.1| hypothetical protein SELMODRAFT_176675 [Selaginella
moellendorffii]
gi|300165800|gb|EFJ32407.1| hypothetical protein SELMODRAFT_230895 [Selaginella
moellendorffii]
Length = 88
Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 78/88 (88%), Positives = 84/88 (95%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA++KVQRIMTQPINLIFRFLQSKA IQ+WLFEQKDLRIEGRIIGFDEYMNLVLDDA E+
Sbjct: 1 MATSKVQRIMTQPINLIFRFLQSKATIQVWLFEQKDLRIEGRIIGFDEYMNLVLDDAYEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
+KK +RKPLGRILLKGDNITLMMNTGK
Sbjct: 61 SLKKKSRKPLGRILLKGDNITLMMNTGK 88
>gi|257815604|gb|ACV70140.1| small nuclear ribonucleoprotein E [Jatropha curcas]
Length = 88
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/88 (85%), Positives = 79/88 (89%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRI+ QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMN VLDDAEEV
Sbjct: 1 MASTKVQRILPQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNSVLDDAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KK RK LG I KGDNI LMMN+GK
Sbjct: 61 NVKKKPRKSLGGIFFKGDNIILMMNSGK 88
>gi|333656537|gb|AEF68171.1| Sm-E-like protein [Physarum polycephalum]
Length = 90
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 79/86 (91%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
KVQ+ MTQPINLIFR+LQ+K+RIQIWL+EQ D+RIEGRIIGFDEYMNLVLDDA+E+
Sbjct: 4 PPAKVQKPMTQPINLIFRYLQNKSRIQIWLYEQNDVRIEGRIIGFDEYMNLVLDDADEIF 63
Query: 62 IKKNTRKPLGRILLKGDNITLMMNTG 87
+KKNT+K LGRILLKGDNITLMMNTG
Sbjct: 64 VKKNTKKHLGRILLKGDNITLMMNTG 89
>gi|384252439|gb|EIE25915.1| small nuclear ribonucleo protein E [Coccomyxa subellipsoidea
C-169]
Length = 87
Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/86 (80%), Positives = 79/86 (91%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+TKV+RIMTQPINLIFRFLQS+ ++QIWL+EQ DLRIEGRIIGFDEYMNLVLD+AEEV +
Sbjct: 2 ATKVKRIMTQPINLIFRFLQSRQKVQIWLYEQTDLRIEGRIIGFDEYMNLVLDEAEEVSM 61
Query: 63 KKNTRKPLGRILLKGDNITLMMNTGK 88
K+ TRK LGRILLKGDNITLM TG+
Sbjct: 62 KRKTRKALGRILLKGDNITLMQTTGR 87
>gi|255087330|ref|XP_002505588.1| predicted protein [Micromonas sp. RCC299]
gi|226520858|gb|ACO66846.1| predicted protein [Micromonas sp. RCC299]
Length = 87
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 78/86 (90%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+TKVQRIMTQPINLIFRFLQ+KARIQIWL+E D +EGRIIGFDEYMNLVLDDAEEV+
Sbjct: 2 ATKVQRIMTQPINLIFRFLQTKARIQIWLYENTDTVVEGRIIGFDEYMNLVLDDAEEVNK 61
Query: 63 KKNTRKPLGRILLKGDNITLMMNTGK 88
KK TRK +GRILLKGDNIT+M+NT K
Sbjct: 62 KKGTRKTVGRILLKGDNITMMVNTSK 87
>gi|193848588|gb|ACF22772.1| small nuclear ribonucleoprotein E [Brachypodium distachyon]
Length = 79
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/88 (84%), Positives = 78/88 (88%), Gaps = 9/88 (10%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPI KARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 51
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KKNTRK LGRILLKGDNITLMMNTGK
Sbjct: 52 NVKKNTRKSLGRILLKGDNITLMMNTGK 79
>gi|125560150|gb|EAZ05598.1| hypothetical protein OsI_27814 [Oryza sativa Indica Group]
gi|125560167|gb|EAZ05615.1| hypothetical protein OsI_27832 [Oryza sativa Indica Group]
gi|222639919|gb|EEE68051.1| hypothetical protein OsJ_26051 [Oryza sativa Japonica Group]
Length = 79
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/88 (84%), Positives = 78/88 (88%), Gaps = 9/88 (10%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPI KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE+
Sbjct: 1 MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI 51
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
++KK+TRK LGRILLKGDNITLMMNTGK
Sbjct: 52 NVKKDTRKSLGRILLKGDNITLMMNTGK 79
>gi|159472134|ref|XP_001694206.1| small nuclear ribonucleoprotein E [Chlamydomonas reinhardtii]
gi|158276869|gb|EDP02639.1| small nuclear ribonucleoprotein E [Chlamydomonas reinhardtii]
Length = 87
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 79/86 (91%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+TKVQ+IMTQPINL+FRFLQSK ++QIWLF+Q DLR+EGRIIGFDEYMNLVLD+AEEV +
Sbjct: 2 ATKVQKIMTQPINLMFRFLQSKQKVQIWLFDQADLRVEGRIIGFDEYMNLVLDEAEEVSM 61
Query: 63 KKNTRKPLGRILLKGDNITLMMNTGK 88
K+ TRK LGRILLKGDNITL+ TG+
Sbjct: 62 KRKTRKTLGRILLKGDNITLIQTTGR 87
>gi|414875727|tpg|DAA52858.1| TPA: hypothetical protein ZEAMMB73_852117, partial [Zea mays]
Length = 177
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/74 (91%), Positives = 73/74 (98%)
Query: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 74
NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEE+++KKNTRK LGRIL
Sbjct: 104 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRKTLGRIL 163
Query: 75 LKGDNITLMMNTGK 88
LKGDNITLMMN+GK
Sbjct: 164 LKGDNITLMMNSGK 177
>gi|440796303|gb|ELR17412.1| small nuclear ribonucleoprotein e, putative [Acanthamoeba
castellanii str. Neff]
Length = 90
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 76/84 (90%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ+IMTQPINLIFRFLQ+K+RIQI L+E DLRIEGRIIGFDEYMNLVLD+AEEV K+
Sbjct: 7 KVQKIMTQPINLIFRFLQNKSRIQIMLYENTDLRIEGRIIGFDEYMNLVLDEAEEVSTKR 66
Query: 65 NTRKPLGRILLKGDNITLMMNTGK 88
TR PLGRILLKGDNIT+M+NT K
Sbjct: 67 GTRTPLGRILLKGDNITMMLNTSK 90
>gi|302845652|ref|XP_002954364.1| hypothetical protein VOLCADRAFT_64746 [Volvox carteri f.
nagariensis]
gi|300260294|gb|EFJ44514.1| hypothetical protein VOLCADRAFT_64746 [Volvox carteri f.
nagariensis]
Length = 87
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 78/86 (90%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+TKVQ+IMTQPINL+FRFLQSK ++QIWL++Q DLR+EGRIIGFDEYMNLVLD+AEEV +
Sbjct: 2 ATKVQKIMTQPINLMFRFLQSKQKVQIWLYDQADLRVEGRIIGFDEYMNLVLDEAEEVSM 61
Query: 63 KKNTRKPLGRILLKGDNITLMMNTGK 88
K+ RK LGRILLKGDNITL+ TG+
Sbjct: 62 KRKNRKTLGRILLKGDNITLIQTTGR 87
>gi|145329170|ref|NP_001077914.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|330251707|gb|AEC06801.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 78
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/71 (95%), Positives = 69/71 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60
Query: 61 HIKKNTRKPLG 71
IKKNTRKPLG
Sbjct: 61 SIKKNTRKPLG 71
>gi|302845648|ref|XP_002954362.1| hypothetical protein VOLCADRAFT_82766 [Volvox carteri f.
nagariensis]
gi|300260292|gb|EFJ44512.1| hypothetical protein VOLCADRAFT_82766 [Volvox carteri f.
nagariensis]
Length = 87
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 78/86 (90%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+TK+Q+IMTQPINL+FRFLQSK ++QIWL++Q DLRIEGRIIGFDEYMNLVLD+AEEV +
Sbjct: 2 ATKIQKIMTQPINLMFRFLQSKQKVQIWLYDQADLRIEGRIIGFDEYMNLVLDEAEEVSM 61
Query: 63 KKNTRKPLGRILLKGDNITLMMNTGK 88
K+ RK LGRILLKGDNITL+ TG+
Sbjct: 62 KRKNRKTLGRILLKGDNITLIQTTGR 87
>gi|116780366|gb|ABK21652.1| unknown [Picea sitchensis]
Length = 79
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/88 (79%), Positives = 76/88 (86%), Gaps = 9/88 (10%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA+T+VQRIMTQPI KARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEE+
Sbjct: 1 MATTRVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 51
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTGK 88
+K+ T KPLGRILLKGDNITLMMNTGK
Sbjct: 52 SVKRKTHKPLGRILLKGDNITLMMNTGK 79
>gi|221119660|ref|XP_002154306.1| PREDICTED: small nuclear ribonucleoprotein E-like [Hydra
magnipapillata]
Length = 87
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 75/85 (88%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S KVQ++M QPINLIFR+LQ++ARIQIWL+EQ +LRIEG IIGFDEYMNLVLDDA+EVH+
Sbjct: 2 SKKVQKVMVQPINLIFRYLQNRARIQIWLYEQNNLRIEGHIIGFDEYMNLVLDDAQEVHV 61
Query: 63 KKNTRKPLGRILLKGDNITLMMNTG 87
K T+K LGRILLKGDNITL+ N
Sbjct: 62 KNKTKKQLGRILLKGDNITLIQNVA 86
>gi|156378619|ref|XP_001631239.1| predicted protein [Nematostella vectensis]
gi|156218276|gb|EDO39176.1| predicted protein [Nematostella vectensis]
Length = 91
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 76/83 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ++++IQIWL+EQ ++RIEG IIGFDEYMNLVLD+AEEVH+K
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSKIQIWLYEQVNMRIEGHIIGFDEYMNLVLDEAEEVHLKT 66
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
TRKPLGRIL+KGDNITL+MN
Sbjct: 67 KTRKPLGRILIKGDNITLLMNAS 89
>gi|325181229|emb|CCA15643.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 627
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 63/85 (74%), Positives = 75/85 (88%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
+ ST+VQ+ MTQPINL+FRFLQ+KAR+QIWL+EQ RIEGRI+GFDEYMN+VLD+AEEV
Sbjct: 536 IMSTRVQKPMTQPINLMFRFLQNKARVQIWLYEQTQTRIEGRIMGFDEYMNIVLDEAEEV 595
Query: 61 HIKKNTRKPLGRILLKGDNITLMMN 85
+KK R PLGRILLKGD ITLMM+
Sbjct: 596 DVKKAKRAPLGRILLKGDTITLMMS 620
>gi|428163538|gb|EKX32604.1| small nuclear ribonucleoprotein-like protein [Guillardia theta
CCMP2712]
Length = 91
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 73/80 (91%)
Query: 4 TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK 63
+K Q+ MTQPINLIFRFLQ+K+RIQIWL+E DLRIEG+IIGFDEYMNLVLD+AEE H K
Sbjct: 2 SKQQKTMTQPINLIFRFLQNKSRIQIWLYENADLRIEGQIIGFDEYMNLVLDNAEEYHKK 61
Query: 64 KNTRKPLGRILLKGDNITLM 83
K TRKPLGRILLKG+NITLM
Sbjct: 62 KGTRKPLGRILLKGENITLM 81
>gi|156554389|ref|XP_001600882.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Nasonia vitripennis]
Length = 94
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 73/85 (85%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
KVQ++M QPINLIFR+LQ+++R+ +WLFE +LRIEG I+GFDEYMNLVLDDAEE H
Sbjct: 5 GPPKVQKVMVQPINLIFRYLQNRSRVSVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYH 64
Query: 62 IKKNTRKPLGRILLKGDNITLMMNT 86
+K TRKPLGRI+LKGDNITL+ NT
Sbjct: 65 VKSKTRKPLGRIMLKGDNITLIQNT 89
>gi|401398344|ref|XP_003880279.1| hypothetical protein NCLIV_007180 [Neospora caninum Liverpool]
gi|325114689|emb|CBZ50244.1| hypothetical protein NCLIV_007180 [Neospora caninum Liverpool]
Length = 91
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 77/86 (89%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M++ K+Q+IMTQPINLIFRF + R+QIWL+EQ D+RIEGRI+GFDEYMN+VLDDAEEV
Sbjct: 6 MSNKKLQKIMTQPINLIFRFFTQRMRVQIWLYEQPDMRIEGRIMGFDEYMNMVLDDAEEV 65
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNT 86
++KK TR P+GRILLKG+N+TL+M T
Sbjct: 66 YLKKRTRIPVGRILLKGENVTLIMAT 91
>gi|336455074|ref|NP_001229595.1| small nuclear ribonucleoprotein polypeptide E-like
[Strongylocentrotus purpuratus]
Length = 99
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 73/82 (89%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++R+QIWL++Q +LRIEG IIGFDEYMN+VLDDAEE H K
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRVQIWLYDQSNLRIEGHIIGFDEYMNVVLDDAEEYHKKN 66
Query: 65 NTRKPLGRILLKGDNITLMMNT 86
TRKPLGRILLKGDNITL+ N
Sbjct: 67 KTRKPLGRILLKGDNITLIQNV 88
>gi|325181839|emb|CCA16294.1| small nuclear ribonucleoprotein homolog putative [Albugo
laibachii Nc14]
Length = 91
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/83 (75%), Positives = 74/83 (89%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
ST+VQ+ MTQPINL+FRFLQ+KAR+QIWL+EQ RIEGRI+GFDEYMN+VLD+AEEV +
Sbjct: 2 STRVQKPMTQPINLMFRFLQNKARVQIWLYEQTQTRIEGRIMGFDEYMNIVLDEAEEVDV 61
Query: 63 KKNTRKPLGRILLKGDNITLMMN 85
KK R PLGRILLKGD ITLMM+
Sbjct: 62 KKAKRAPLGRILLKGDTITLMMS 84
>gi|237844609|ref|XP_002371602.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
ME49]
gi|211969266|gb|EEB04462.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
ME49]
gi|221482996|gb|EEE21320.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
GT1]
gi|221503930|gb|EEE29607.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
VEG]
Length = 91
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 77/86 (89%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M++ K+Q+IMTQPINLIFRF + R+QIWL+EQ D+RIEGRI+GFDEYMN+VLDDAEEV
Sbjct: 6 MSNKKLQKIMTQPINLIFRFFTQRMRVQIWLYEQPDMRIEGRIMGFDEYMNMVLDDAEEV 65
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNT 86
++KK TR P+GRILLKG+N+TL+M T
Sbjct: 66 YLKKRTRIPVGRILLKGENVTLIMAT 91
>gi|307105606|gb|EFN53854.1| hypothetical protein CHLNCDRAFT_36210 [Chlorella variabilis]
Length = 86
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 72/79 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KV+RIMTQPINLIFRFLQS+ +IQIWL+E DLRIEGRIIGFDEYMNLVLD+AEEV +K+
Sbjct: 4 KVKRIMTQPINLIFRFLQSRQKIQIWLYEHNDLRIEGRIIGFDEYMNLVLDEAEEVSVKR 63
Query: 65 NTRKPLGRILLKGDNITLM 83
TRK LGRILLKGD ITLM
Sbjct: 64 KTRKALGRILLKGDTITLM 82
>gi|260788526|ref|XP_002589300.1| hypothetical protein BRAFLDRAFT_268096 [Branchiostoma floridae]
gi|229274477|gb|EEN45311.1| hypothetical protein BRAFLDRAFT_268096 [Branchiostoma floridae]
Length = 90
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/79 (77%), Positives = 73/79 (92%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQIWL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H+K
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRIQIWLYEQTNMRIEGHIIGFDEYMNLVLDDAEEIHLKT 66
Query: 65 NTRKPLGRILLKGDNITLM 83
RKPLGRILLKGDNITL+
Sbjct: 67 KNRKPLGRILLKGDNITLI 85
>gi|145356609|ref|XP_001422520.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582763|gb|ABP00837.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 87
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+TKVQRIMTQPINLIFRFLQ+KAR+QIW++E D +EGRI+GFDEYMNLVLDDAEEV
Sbjct: 2 ATKVQRIMTQPINLIFRFLQTKARVQIWMYENPDTCVEGRIVGFDEYMNLVLDDAEEVTE 61
Query: 63 KKNTRKPLGRILLKGDNITLMMNTGK 88
KK+ R +GRILLKGDNITLM N K
Sbjct: 62 KKSRRVGVGRILLKGDNITLMRNVSK 87
>gi|291235504|ref|XP_002737683.1| PREDICTED: small nuclear ribonucleoprotein polypeptide E-like
[Saccoglossus kowalevskii]
Length = 92
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 73/82 (89%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQS++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE H+K
Sbjct: 7 KVQKVMVQPINLIFRYLQSRSRIQVWLYEQVNMRIEGHIIGFDEYMNLVLDDAEEYHMKS 66
Query: 65 NTRKPLGRILLKGDNITLMMNT 86
TRK LGR++LKGDNITL+ N
Sbjct: 67 KTRKTLGRVMLKGDNITLIQNV 88
>gi|328778046|ref|XP_003249437.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Apis
mellifera]
Length = 94
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 73/85 (85%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
KVQ++M QPINLIFR+LQ+++R+Q+WLFE +LRIEG I+GFDEYMNLVLDDAEE H
Sbjct: 5 GPQKVQKVMVQPINLIFRYLQNRSRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYH 64
Query: 62 IKKNTRKPLGRILLKGDNITLMMNT 86
+K RKPLGRI+LKGDNITL+ NT
Sbjct: 65 LKTKNRKPLGRIMLKGDNITLIQNT 89
>gi|392874340|gb|AFM86002.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
gi|392875604|gb|AFM86634.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
gi|392884142|gb|AFM90903.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
Length = 92
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 75/84 (89%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+ KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H+
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHM 66
Query: 63 KKNTRKPLGRILLKGDNITLMMNT 86
K RKPLGR++LKGDNITL+ +
Sbjct: 67 KSKARKPLGRVMLKGDNITLLQSV 90
>gi|380023740|ref|XP_003695670.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Apis
florea]
Length = 129
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 73/82 (89%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++R+Q+WLFE +LRIEG I+GFDEYMNLVLDDAEE H+K
Sbjct: 43 KVQKVMVQPINLIFRYLQNRSRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYHLKT 102
Query: 65 NTRKPLGRILLKGDNITLMMNT 86
RKPLGRI+LKGDNITL+ NT
Sbjct: 103 KNRKPLGRIMLKGDNITLIQNT 124
>gi|317418569|emb|CBN80607.1| Small nuclear ribonucleoprotein E [Dicentrarchus labrax]
Length = 92
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 74/83 (89%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
RKPLGRI+LKGDNITL+ +
Sbjct: 69 KNRKPLGRIMLKGDNITLLQSVS 91
>gi|195653717|gb|ACG46326.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 80
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEE+
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEI 60
Query: 61 HIKKNTRKPL 70
++KKNT K L
Sbjct: 61 NVKKNTSKDL 70
>gi|213514566|ref|NP_001134166.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|209731160|gb|ACI66449.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|209731914|gb|ACI66826.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|221222246|gb|ACM09784.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223646154|gb|ACN09835.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223646558|gb|ACN10037.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223647280|gb|ACN10398.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223672001|gb|ACN12182.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223672405|gb|ACN12384.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223673159|gb|ACN12761.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|225715976|gb|ACO13834.1| Small nuclear ribonucleoprotein E [Esox lucius]
gi|303663497|gb|ADM16108.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|303666767|gb|ADM16243.1| Small nuclear ribonucleoprotein E [Salmo salar]
Length = 92
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 74/83 (89%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
RKPLGRI+LKGDNITL+ +
Sbjct: 69 KNRKPLGRIMLKGDNITLLQSVA 91
>gi|348510586|ref|XP_003442826.1| PREDICTED: small nuclear ribonucleoprotein E-like [Oreochromis
niloticus]
Length = 92
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 73/79 (92%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
RKPLGRI+LKGDNITL+
Sbjct: 69 KNRKPLGRIMLKGDNITLL 87
>gi|432859400|ref|XP_004069089.1| PREDICTED: small nuclear ribonucleoprotein E-like [Oryzias
latipes]
Length = 92
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 73/79 (92%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
RKPLGR++LKGDNITL+
Sbjct: 69 KNRKPLGRVMLKGDNITLL 87
>gi|391347407|ref|XP_003747954.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Metaseiulus occidentalis]
Length = 90
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 75/85 (88%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
+TKVQ++M QPINLIFR+LQ++A+IQ+WL+E LRIEG IIGFDEYMNLVLD+AEEV+
Sbjct: 4 GNTKVQKVMVQPINLIFRYLQNRAKIQVWLYENTSLRIEGYIIGFDEYMNLVLDEAEEVY 63
Query: 62 IKKNTRKPLGRILLKGDNITLMMNT 86
+K RK +GRILLKG+NITL+MNT
Sbjct: 64 VKTGHRKTIGRILLKGENITLLMNT 88
>gi|209735714|gb|ACI68726.1| Small nuclear ribonucleoprotein E [Salmo salar]
Length = 92
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+ +RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNHSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
RKPLGRI+LKGDNITL+ +
Sbjct: 69 KNRKPLGRIMLKGDNITLLQSVA 91
>gi|387914532|gb|AFK10875.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
Length = 92
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 75/84 (89%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+ KVQ+++ QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H+
Sbjct: 7 AQKVQKVLVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHM 66
Query: 63 KKNTRKPLGRILLKGDNITLMMNT 86
K RKPLGR++LKGDNITL+ +
Sbjct: 67 KSKARKPLGRVMLKGDNITLLQSV 90
>gi|318820229|ref|NP_001187846.1| small nuclear ribonucleoprotein e [Ictalurus punctatus]
gi|308324130|gb|ADO29200.1| small nuclear ribonucleoprotein e [Ictalurus punctatus]
Length = 92
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 74/83 (89%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQINMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
RKPLGR++LKGDNITL+ +
Sbjct: 69 KNRKPLGRVMLKGDNITLLQSVS 91
>gi|308322451|gb|ADO28363.1| small nuclear ribonucleoprotein e [Ictalurus furcatus]
Length = 92
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 74/83 (89%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQINMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
RKPLGR++LKGDNITL+ +
Sbjct: 69 KNRKPLGRVMLKGDNITLLQSVS 91
>gi|47227397|emb|CAF96946.1| unnamed protein product [Tetraodon nigroviridis]
Length = 92
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 73/79 (92%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHMKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
RKPLGR++LKGDNITL+
Sbjct: 69 KNRKPLGRVMLKGDNITLL 87
>gi|41055945|ref|NP_957298.1| small nuclear ribonucleoprotein E [Danio rerio]
gi|54039591|sp|Q7ZUG0.1|RUXE_DANRE RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|29124607|gb|AAH49062.1| Small nuclear ribonucleoprotein polypeptide E [Danio rerio]
Length = 92
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 72/79 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RI +WL+EQ ++RIEG IIGFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
RKPLGRI+LKGDNITL+
Sbjct: 69 KNRKPLGRIMLKGDNITLL 87
>gi|147904965|ref|NP_001085500.1| MGC80249 protein [Xenopus laevis]
gi|49119142|gb|AAH72854.1| MGC80249 protein [Xenopus laevis]
Length = 93
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 74/82 (90%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDD+EE+H
Sbjct: 7 GGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDSEEIH 66
Query: 62 IKKNTRKPLGRILLKGDNITLM 83
+K +RKP+GRI+LKGDNITL+
Sbjct: 67 LKTKSRKPIGRIMLKGDNITLL 88
>gi|357631258|gb|EHJ78848.1| hypothetical protein KGM_10301 [Danaus plexippus]
Length = 463
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 55/81 (67%), Positives = 72/81 (88%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I+GFDEYMN+VLD+AEEVH+K
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKT 67
Query: 65 NTRKPLGRILLKGDNITLMMN 85
RK +GRI++KGDNITL+ N
Sbjct: 68 KNRKQIGRIMMKGDNITLIQN 88
>gi|340720323|ref|XP_003398590.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Bombus terrestris]
gi|350408777|ref|XP_003488510.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Bombus impatiens]
Length = 94
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 73/85 (85%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
KVQ++M QPINLIFR+LQ+++R+Q+WLFE +LRIEG I+GFDEYMNLVLDDAEE +
Sbjct: 5 GPQKVQKVMVQPINLIFRYLQNRSRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYN 64
Query: 62 IKKNTRKPLGRILLKGDNITLMMNT 86
+K RKPLGRI+LKGDNITL+ NT
Sbjct: 65 LKTKARKPLGRIMLKGDNITLIQNT 89
>gi|410920641|ref|XP_003973792.1| PREDICTED: small nuclear ribonucleoprotein E-like [Takifugu
rubripes]
gi|410920643|ref|XP_003973793.1| PREDICTED: small nuclear ribonucleoprotein E-like [Takifugu
rubripes]
Length = 92
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 73/79 (92%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDD+EE+H+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDSEEIHMKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
RKPLGR++LKGDNITL+
Sbjct: 69 KNRKPLGRVMLKGDNITLL 87
>gi|307213117|gb|EFN88639.1| Probable small nuclear ribonucleoprotein E [Harpegnathos saltator]
Length = 295
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/82 (71%), Positives = 72/82 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++R+Q+WLFE +LRIEG I+GFDEYMNLVLDDAEE + K
Sbjct: 209 KVQKVMVQPINLIFRYLQNRSRVQVWLFENVNLRIEGHIVGFDEYMNLVLDDAEEYYQKT 268
Query: 65 NTRKPLGRILLKGDNITLMMNT 86
RKPLGRI+LKGDNITL+ NT
Sbjct: 269 KVRKPLGRIMLKGDNITLIQNT 290
>gi|52346208|ref|NP_001005147.1| small nuclear ribonucleoprotein polypeptide E [Xenopus (Silurana)
tropicalis]
gi|50603823|gb|AAH77697.1| MGC89991 protein [Xenopus (Silurana) tropicalis]
gi|89268183|emb|CAJ83657.1| small nuclear ribonucleoprotein polypeptide E [Xenopus (Silurana)
tropicalis]
gi|166796482|gb|AAI59376.1| MGC89991 protein [Xenopus (Silurana) tropicalis]
Length = 92
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 73/79 (92%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHLKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 69 KSRKQLGRIMLKGDNITLL 87
>gi|147903209|ref|NP_001090934.1| small nuclear ribonucleoprotein E [Sus scrofa]
gi|166233313|sp|A1XQR9.1|RUXE_PIG RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|117660533|gb|ABK55625.1| SNRPE [Sus scrofa]
gi|117660560|gb|ABK55626.1| NDUFB2 [Sus scrofa]
Length = 92
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 74/85 (87%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+ KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 63 KKNTRKPLGRILLKGDNITLMMNTG 87
K +RK LGRI+LKGDNITL+ +
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|301783571|ref|XP_002927201.1| PREDICTED: small nuclear ribonucleoprotein E-like [Ailuropoda
melanoleuca]
Length = 98
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 72/79 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 15 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 74
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 75 KSRKQLGRIMLKGDNITLL 93
>gi|294952865|ref|XP_002787488.1| Small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239902490|gb|EER19284.1| Small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 93
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 73/83 (87%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+ K+Q+IMT PINLIFR+L K RI +WL++ KDLR+EG I+GFDEYMN+VLDDAEEV
Sbjct: 2 MSKRKLQKIMTMPINLIFRYLTEKTRIVVWLYDHKDLRMEGVILGFDEYMNVVLDDAEEV 61
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
+ KK+TR+P+GRILLKGDNITLM
Sbjct: 62 NTKKDTRRPVGRILLKGDNITLM 84
>gi|4507129|ref|NP_003085.1| small nuclear ribonucleoprotein E [Homo sapiens]
gi|27883844|ref|NP_033253.1| small nuclear ribonucleoprotein E [Mus musculus]
gi|45382605|ref|NP_990581.1| small nuclear ribonucleoprotein E [Gallus gallus]
gi|134085710|ref|NP_001076928.1| small nuclear ribonucleoprotein E [Bos taurus]
gi|388490108|ref|NP_001253704.1| small nuclear ribonucleoprotein E [Macaca mulatta]
gi|403420626|ref|NP_001258166.1| small nuclear ribonucleoprotein polypeptide E [Rattus norvegicus]
gi|114572016|ref|XP_001158544.1| PREDICTED: small nuclear ribonucleoprotein E isoform 3 [Pan
troglodytes]
gi|126306697|ref|XP_001364976.1| PREDICTED: small nuclear ribonucleoprotein E-like [Monodelphis
domestica]
gi|291402573|ref|XP_002717622.1| PREDICTED: small nuclear ribonucleoprotein polypeptide E
[Oryctolagus cuniculus]
gi|297662243|ref|XP_002809621.1| PREDICTED: small nuclear ribonucleoprotein E [Pongo abelii]
gi|327271183|ref|XP_003220367.1| PREDICTED: small nuclear ribonucleoprotein E-like [Anolis
carolinensis]
gi|344277002|ref|XP_003410294.1| PREDICTED: small nuclear ribonucleoprotein E-like [Loxodonta
africana]
gi|348578175|ref|XP_003474859.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
gi|354487267|ref|XP_003505795.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cricetulus
griseus]
gi|359324001|ref|XP_003640259.1| PREDICTED: small nuclear ribonucleoprotein E-like [Canis lupus
familiaris]
gi|397479845|ref|XP_003811214.1| PREDICTED: small nuclear ribonucleoprotein E-like [Pan paniscus]
gi|397504925|ref|XP_003823029.1| PREDICTED: small nuclear ribonucleoprotein E [Pan paniscus]
gi|402857535|ref|XP_003893308.1| PREDICTED: small nuclear ribonucleoprotein E [Papio anubis]
gi|402858753|ref|XP_003893852.1| PREDICTED: small nuclear ribonucleoprotein E-like [Papio anubis]
gi|403261763|ref|XP_003923280.1| PREDICTED: small nuclear ribonucleoprotein E-like [Saimiri
boliviensis boliviensis]
gi|403294819|ref|XP_003938362.1| PREDICTED: small nuclear ribonucleoprotein E [Saimiri boliviensis
boliviensis]
gi|410986283|ref|XP_003999440.1| PREDICTED: small nuclear ribonucleoprotein E [Felis catus]
gi|426239377|ref|XP_004013598.1| PREDICTED: small nuclear ribonucleoprotein E [Ovis aries]
gi|426333365|ref|XP_004028248.1| PREDICTED: small nuclear ribonucleoprotein E-like [Gorilla
gorilla gorilla]
gi|55977309|sp|P62305.1|RUXE_MOUSE RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|61237380|sp|P62304.1|RUXE_HUMAN RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|78102504|sp|P62303.1|RUXE_CHICK RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|190360254|sp|A4FUI2.1|RUXE_BOVIN RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|225734045|pdb|3CW1|E Chain E, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734054|pdb|3CW1|W Chain W, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734063|pdb|3CW1|X Chain X, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734072|pdb|3CW1|Y Chain Y, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583605|pdb|3PGW|E Chain E, Crystal Structure Of Human U1 Snrnp
gi|315583614|pdb|3PGW|H Chain H, Crystal Structure Of Human U1 Snrnp
gi|332639437|pdb|2Y9A|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639444|pdb|2Y9A|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639451|pdb|2Y9A|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639461|pdb|2Y9B|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639468|pdb|2Y9B|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639475|pdb|2Y9B|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639485|pdb|2Y9C|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639492|pdb|2Y9C|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639499|pdb|2Y9C|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639509|pdb|2Y9D|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639516|pdb|2Y9D|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639523|pdb|2Y9D|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781212|pdb|3S6N|E Chain E, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302200|pdb|4F7U|E Chain E, Macromolecular Machine 6
gi|444302201|pdb|4F7U|H Chain H, Macromolecular Machine 6
gi|453055424|pdb|1VU2|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453055432|pdb|1VU2|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453055440|pdb|1VU2|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453055448|pdb|1VU2|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453055456|pdb|1VU2|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453055464|pdb|1VU2|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453055476|pdb|1VU2|YY Chain y, The 8s Snrnp Assembly Intermediate
gi|453055480|pdb|1VU3|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453055488|pdb|1VU3|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453055496|pdb|1VU3|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453055504|pdb|1VU3|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453055512|pdb|1VU3|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453055520|pdb|1VU3|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453056012|pdb|4F77|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453056020|pdb|4F77|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453056028|pdb|4F77|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453056036|pdb|4F77|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453056044|pdb|4F77|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453056052|pdb|4F77|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453056064|pdb|4F77|YY Chain y, The 8s Snrnp Assembly Intermediate
gi|35105|emb|CAA31007.1| unnamed protein product [Homo sapiens]
gi|304425|gb|AAA49073.1| small nuclear ribonucleoprotein E [Gallus gallus]
gi|312002|emb|CAA46624.1| SmE protein [Gallus gallus]
gi|338267|gb|AAA90926.1| small nuclear RNA protein (snRNP E) [Homo sapiens]
gi|12803609|gb|AAH02639.1| Small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
gi|12859681|dbj|BAB31734.1| unnamed protein product [Mus musculus]
gi|14198403|gb|AAH08262.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|33585911|gb|AAH55765.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|56078667|gb|AAH51207.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|60688403|gb|AAH90951.1| Small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
gi|119611900|gb|EAW91494.1| small nuclear ribonucleoprotein polypeptide E, isoform CRA_a
[Homo sapiens]
gi|133777545|gb|AAI14916.1| SNRPE protein [Bos taurus]
gi|149058608|gb|EDM09765.1| rCG46024, isoform CRA_a [Rattus norvegicus]
gi|189053260|dbj|BAG35066.1| unnamed protein product [Homo sapiens]
gi|208967438|dbj|BAG73733.1| small nuclear ribonucleoprotein polypeptide E [synthetic
construct]
gi|296479386|tpg|DAA21501.1| TPA: small nuclear ribonucleoprotein E [Bos taurus]
gi|344246138|gb|EGW02242.1| Small nuclear ribonucleoprotein E [Cricetulus griseus]
gi|355558873|gb|EHH15653.1| hypothetical protein EGK_01772 [Macaca mulatta]
gi|355746009|gb|EHH50634.1| hypothetical protein EGM_01497 [Macaca fascicularis]
gi|387542988|gb|AFJ72121.1| small nuclear ribonucleoprotein E [Macaca mulatta]
gi|410355685|gb|JAA44446.1| small nuclear ribonucleoprotein polypeptide E [Pan troglodytes]
gi|417395589|gb|JAA44847.1| Putative small nuclear ribonucleoprotein e [Desmodus rotundus]
Length = 92
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>gi|109484106|ref|XP_001064438.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|293349553|ref|XP_002727191.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>gi|387018116|gb|AFJ51176.1| Small nuclear ribonucleoprotein E [Crotalus adamanteus]
Length = 92
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>gi|148707696|gb|EDL39643.1| small nuclear ribonucleoprotein E, isoform CRA_a [Mus musculus]
Length = 105
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 72/79 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 22 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 81
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 82 KSRKQLGRIMLKGDNITLL 100
>gi|395734016|ref|XP_003776336.1| PREDICTED: small nuclear ribonucleoprotein E-like [Pongo abelii]
Length = 92
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 72/79 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG I+GFDEYMNLVLDDAEEVH K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIVGFDEYMNLVLDDAEEVHSKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 69 KSRKQLGRIMLKGDNITLL 87
>gi|281354337|gb|EFB29921.1| hypothetical protein PANDA_016960 [Ailuropoda melanoleuca]
Length = 92
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 72/79 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 69 KSRKQLGRIMLKGDNITLL 87
>gi|149408455|ref|XP_001513314.1| PREDICTED: small nuclear ribonucleoprotein E-like
[Ornithorhynchus anatinus]
Length = 92
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGR++LKGDNITL+ +
Sbjct: 69 KSRKQLGRVMLKGDNITLLQSVS 91
>gi|328768113|gb|EGF78160.1| hypothetical protein BATDEDRAFT_90820 [Batrachochytrium
dendrobatidis JAM81]
Length = 91
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 71/84 (84%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+TK+Q+IM QPINLIFR LQ K+R+QIWL+EQ ++RIEG+I+GFDE+MNLVLDDAEEV
Sbjct: 2 ATKLQKIMVQPINLIFRMLQQKSRVQIWLYEQTEIRIEGQILGFDEFMNLVLDDAEEVST 61
Query: 63 KKNTRKPLGRILLKGDNITLMMNT 86
K RK LGRILLKGDNITL N
Sbjct: 62 KTGARKQLGRILLKGDNITLFCNA 85
>gi|148226114|ref|NP_001085570.1| small nuclear ribonucleoprotein polypeptide E [Xenopus laevis]
gi|49256559|gb|AAH72956.1| MGC82471 protein [Xenopus laevis]
Length = 92
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 73/79 (92%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++R+Q+WL+EQ ++RIEG IIGFDEYMN+VLDDAEE+H+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRVQVWLYEQVNMRIEGCIIGFDEYMNIVLDDAEEIHLKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 69 KSRKQLGRIMLKGDNITLL 87
>gi|390176608|ref|XP_003736146.1| GA15004 [Drosophila pseudoobscura pseudoobscura]
gi|388858695|gb|EIM52219.1| GA15004 [Drosophila pseudoobscura pseudoobscura]
Length = 94
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 73/86 (84%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
++ KVQ++M QPINLIFR+LQ+++R+Q+WL+E LRIEG I+GFDEYMNLVLDDAEEV+
Sbjct: 5 SNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVY 64
Query: 62 IKKNTRKPLGRILLKGDNITLMMNTG 87
+K RK LGRI+LKGDNITL+ N
Sbjct: 65 VKTRQRKSLGRIMLKGDNITLIQNVS 90
>gi|198417167|ref|XP_002127833.1| PREDICTED: similar to small nuclear ribonucleoprotein E [Ciona
intestinalis]
Length = 96
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 73/79 (92%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++R+ IW++EQ ++RIEG I+GFDEYMNLVLDDAEEV+IKK
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRVSIWVYEQVNMRIEGHIVGFDEYMNLVLDDAEEVNIKK 66
Query: 65 NTRKPLGRILLKGDNITLM 83
N RK LGR++LKGDNIT++
Sbjct: 67 NVRKTLGRVMLKGDNITVI 85
>gi|294956367|ref|XP_002788910.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239904570|gb|EER20706.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 94
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 73/83 (87%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+ K+Q+IMT PINLIFR+L K RI +WL++ KDLR+EG I+GFDEYMN+VLDDAEEV
Sbjct: 2 MSKRKLQKIMTMPINLIFRYLTEKTRIVVWLYDHKDLRMEGVILGFDEYMNVVLDDAEEV 61
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
+ KK+TR+P+GRILLKGDNITLM
Sbjct: 62 NTKKDTRRPVGRILLKGDNITLM 84
>gi|405971206|gb|EKC36056.1| Small nuclear ribonucleoprotein E [Crassostrea gigas]
Length = 90
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 71/82 (86%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
KVQ++M QPINLIFR+LQ+++RI +WL+EQ +LRIEG I+GFDEYMNLVLD+AEEVH
Sbjct: 5 GGQKVQKVMVQPINLIFRYLQNRSRISVWLYEQTNLRIEGCIVGFDEYMNLVLDEAEEVH 64
Query: 62 IKKNTRKPLGRILLKGDNITLM 83
+K RK LGRILLKGDNITL+
Sbjct: 65 MKTKNRKTLGRILLKGDNITLI 86
>gi|157128750|ref|XP_001661504.1| SM protein G, putative [Aedes aegypti]
gi|108872482|gb|EAT36707.1| AAEL011233-PA [Aedes aegypti]
Length = 91
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 72/84 (85%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+KVQ++M QPINLIFR+LQ+++R+Q+WL+E LRIEG I+GFDEYMNLVLD+AEE +
Sbjct: 5 GSKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEYNT 64
Query: 63 KKNTRKPLGRILLKGDNITLMMNT 86
KK R+PLGRI+LKGDNITL+ N
Sbjct: 65 KKQNRRPLGRIMLKGDNITLIQNV 88
>gi|332222659|ref|XP_003260491.1| PREDICTED: small nuclear ribonucleoprotein E-like [Nomascus
leucogenys]
Length = 92
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ+IM QPINLIFR+LQS++RIQ+WL+EQ +++IEG IIGFDEYMNLVLD+AEE+H K
Sbjct: 9 KVQKIMVQPINLIFRYLQSRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDEAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>gi|443693014|gb|ELT94478.1| hypothetical protein CAPTEDRAFT_158302 [Capitella teleta]
gi|443707581|gb|ELU03095.1| hypothetical protein CAPTEDRAFT_101766 [Capitella teleta]
Length = 92
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 73/82 (89%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLD+AEEV+
Sbjct: 5 AGGKVQKVMVQPINLIFRYLQNRSRIQVWLYEQCNMRIEGCIIGFDEYMNLVLDEAEEVN 64
Query: 62 IKKNTRKPLGRILLKGDNITLM 83
IK RK LGRIL+KGDNITL+
Sbjct: 65 IKTKNRKNLGRILMKGDNITLI 86
>gi|118781504|ref|XP_311506.3| AGAP010440-PA [Anopheles gambiae str. PEST]
gi|116129981|gb|EAA07131.3| AGAP010440-PA [Anopheles gambiae str. PEST]
Length = 90
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 73/84 (86%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+KVQ++M QPINLIFR+LQ+++R+Q+WL+E LRIEG I+GFDEYMNLVLD+AEE +I
Sbjct: 5 GSKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEFNI 64
Query: 63 KKNTRKPLGRILLKGDNITLMMNT 86
KK TR+ LGRI+LKGDNITL+ N
Sbjct: 65 KKQTRRQLGRIMLKGDNITLIQNV 88
>gi|297459953|ref|XP_002700818.1| PREDICTED: uncharacterized protein LOC100296197 [Bos taurus]
Length = 182
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ +++IEG IIGFDEYMNL+LDDAEE+H K
Sbjct: 99 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKT 158
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 159 KSRKQLGRIMLKGDNITLLQSVS 181
>gi|55632867|ref|XP_520443.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan troglodytes]
Length = 92
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 72/79 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ +++IEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 69 KSRKQLGRIMLKGDNITLL 87
>gi|109514130|ref|XP_001065908.1| PREDICTED: small nuclear ribonucleoprotein E [Rattus norvegicus]
Length = 92
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RI+G IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNIRIKGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>gi|389612857|dbj|BAM19829.1| small ribonucleoprotein particle protein SmE [Papilio xuthus]
Length = 95
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 72/85 (84%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
KVQ++M QPINLIFR+LQ+++R+QIWL+E +LRIEG I+GFDEYMN+VLDDAEEVH
Sbjct: 5 GPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDDAEEVH 64
Query: 62 IKKNTRKPLGRILLKGDNITLMMNT 86
+K RK +GRI++KGDNITL+ N
Sbjct: 65 MKTKNRKQIGRIMMKGDNITLIQNV 89
>gi|383413025|gb|AFH29726.1| small nuclear ribonucleoprotein E [Macaca mulatta]
Length = 92
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ+++ QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVVVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>gi|346471229|gb|AEO35459.1| hypothetical protein [Amblyomma maculatum]
Length = 94
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 72/82 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ++ARIQ+WL+E LRIEG IIGFDEYMNLVLDDAEE++ K
Sbjct: 10 KVQKVMVQPINLIFRYLQNRARIQVWLYENVALRIEGHIIGFDEYMNLVLDDAEEIYTKT 69
Query: 65 NTRKPLGRILLKGDNITLMMNT 86
RK +GRILLKG+NITL+M+T
Sbjct: 70 KQRKQVGRILLKGENITLIMST 91
>gi|293356012|ref|XP_002728814.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|392337758|ref|XP_003753347.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ +++IEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>gi|427786001|gb|JAA58452.1| Putative small ribonucleoprotein particle protein sme
[Rhipicephalus pulchellus]
Length = 94
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 72/85 (84%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
KVQ++M QPINLIFR+LQ++ARIQ+WL+E LRIEG IIGFDEYMNLVLDDAEE++
Sbjct: 7 PGQKVQKVMVQPINLIFRYLQNRARIQVWLYENVHLRIEGHIIGFDEYMNLVLDDAEEIY 66
Query: 62 IKKNTRKPLGRILLKGDNITLMMNT 86
K RK +GRILLKG+NITL+M+T
Sbjct: 67 TKPKHRKQVGRILLKGENITLIMST 91
>gi|170065245|ref|XP_001867860.1| small nuclear ribonucleoprotein E [Culex quinquefasciatus]
gi|167882312|gb|EDS45695.1| small nuclear ribonucleoprotein E [Culex quinquefasciatus]
Length = 91
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 72/84 (85%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+KVQ++M QPINLIFR+LQ+++R+Q+WL+E LRIEG I+GFDEYMNLVLD+AEE +I
Sbjct: 5 GSKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEYNI 64
Query: 63 KKNTRKPLGRILLKGDNITLMMNT 86
KK R+ LGRI+LKGDNITL+ N
Sbjct: 65 KKQNRRTLGRIMLKGDNITLIQNV 88
>gi|241838714|ref|XP_002415212.1| small nuclear ribonucleoprotein E, putative [Ixodes scapularis]
gi|215509424|gb|EEC18877.1| small nuclear ribonucleoprotein E, putative [Ixodes scapularis]
Length = 94
Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 72/82 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ++ARIQ+WL+E LRIEG IIGFDEYMNLVLDDAEE++ K
Sbjct: 10 KVQKVMVQPINLIFRYLQNRARIQVWLYENVILRIEGHIIGFDEYMNLVLDDAEEIYTKT 69
Query: 65 NTRKPLGRILLKGDNITLMMNT 86
RK +GRILLKG+NITL+M+T
Sbjct: 70 KQRKQVGRILLKGENITLIMST 91
>gi|440911215|gb|ELR60916.1| Small nuclear ribonucleoprotein E, partial [Bos grunniens mutus]
Length = 91
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 73/82 (89%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ +++IEG IIGFDEYMNL+LDDAEE+H K
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKT 67
Query: 65 NTRKPLGRILLKGDNITLMMNT 86
+RK LGRI+LKGDNITL+ +
Sbjct: 68 KSRKQLGRIMLKGDNITLLQSV 89
>gi|301765636|ref|XP_002918237.1| PREDICTED: small nuclear ribonucleoprotein E-like [Ailuropoda
melanoleuca]
Length = 92
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 72/83 (86%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++R EG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRKEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>gi|296230202|ref|XP_002760604.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 92
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 72/83 (86%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++ IQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSWIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>gi|74747670|sp|Q5VYJ4.1|RUEL1_HUMAN RecName: Full=Putative small nuclear ribonucleoprotein
polypeptide E-like protein 1
Length = 92
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 72/79 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ++++IQ+WL+EQ +++IEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 69 KSRKQLGRIMLKGDNITLL 87
>gi|355721057|gb|AES07138.1| small nuclear ribonucleoprotein polypeptide E [Mustela putorius
furo]
Length = 82
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 71/82 (86%)
Query: 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN 65
VQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 1 VQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTK 60
Query: 66 TRKPLGRILLKGDNITLMMNTG 87
RK LGRI+LKGDNITL+ +
Sbjct: 61 LRKQLGRIMLKGDNITLLQSVS 82
>gi|24582631|ref|NP_609162.1| small ribonucleoprotein particle protein SmE [Drosophila
melanogaster]
gi|29428063|sp|Q9VLV5.1|RUXE_DROME RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
gi|7297315|gb|AAF52576.1| small ribonucleoprotein particle protein SmE [Drosophila
melanogaster]
gi|28317182|gb|AAO39600.1| GM19936p [Drosophila melanogaster]
gi|220947662|gb|ACL86374.1| CG18591-PA [synthetic construct]
gi|220956962|gb|ACL91024.1| CG18591-PA [synthetic construct]
Length = 94
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 72/86 (83%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
+ KVQ++M QPINLIFR+LQ+++R+Q+WL+E LRIEG I+GFDEYMNLVLDDAEEV+
Sbjct: 5 GNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVY 64
Query: 62 IKKNTRKPLGRILLKGDNITLMMNTG 87
+K R+ LGRI+LKGDNITL+ N
Sbjct: 65 VKTRQRRNLGRIMLKGDNITLIQNVS 90
>gi|297480322|ref|XP_002707759.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC100296197 [Bos taurus]
gi|296482627|tpg|DAA24742.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 182
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 72/83 (86%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M PINLIFR+LQ+++RIQ+WL+EQ +++IEG IIGFDEYMNL+LDDAEE+H K
Sbjct: 99 KVQKVMVXPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKT 158
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 159 KSRKQLGRIMLKGDNITLLQSVS 181
>gi|320168707|gb|EFW45606.1| hypothetical protein CAOG_03590 [Capsaspora owczarzaki ATCC
30864]
Length = 87
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 71/84 (84%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S +VQ++M PINLIF++LQ+K R+QIWL+EQ +R+EG I+GFDEYMNLVLDDAEE++
Sbjct: 2 SGRVQKVMVLPINLIFKYLQTKTRVQIWLYEQASMRVEGVIVGFDEYMNLVLDDAEELNA 61
Query: 63 KKNTRKPLGRILLKGDNITLMMNT 86
K TRK +GRILLKGDNITL+M
Sbjct: 62 KSQTRKNVGRILLKGDNITLIMGV 85
>gi|342905932|gb|AEL79249.1| small nuclear ribonucleoprotein E [Rhodnius prolixus]
gi|342905938|gb|AEL79252.1| small nuclear ribonucleoprotein E [Rhodnius prolixus]
Length = 97
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 71/85 (83%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
KVQ++M QPINLIFR+LQ+++R+ +WL+E +LRIEG I+GFDEYMNLVLDDAEE +
Sbjct: 5 GPQKVQKVMVQPINLIFRYLQNRSRVCVWLYENINLRIEGHIVGFDEYMNLVLDDAEEYN 64
Query: 62 IKKNTRKPLGRILLKGDNITLMMNT 86
IK R+PLGRI++KGDNITL+ N
Sbjct: 65 IKTKNRRPLGRIMMKGDNITLIQNV 89
>gi|348553541|ref|XP_003462585.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 93
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ++++IQ+WL+EQ ++R EG IIGFDEYMNL+LDDAEE+H K
Sbjct: 10 KVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMRTEGCIIGFDEYMNLILDDAEEIHSKT 69
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 70 KSRKQLGRIMLKGDNITLL 88
>gi|119589572|gb|EAW69166.1| hCG23490, isoform CRA_a [Homo sapiens]
Length = 92
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 72/82 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPI+LIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNT 86
+RK LGRI+LKG NITL+ +
Sbjct: 69 KSRKQLGRIMLKGGNITLLQSV 90
>gi|321471723|gb|EFX82695.1| hypothetical protein DAPPUDRAFT_195506 [Daphnia pulex]
Length = 94
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 72/85 (84%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+ KVQ++M QPINLIFR+LQ+++R+ IWL+E ++ +EG I+GFDEYMN+VLDDAEEV++
Sbjct: 5 APKVQKVMVQPINLIFRYLQTRSRVDIWLYENINMHMEGHIVGFDEYMNIVLDDAEEVYV 64
Query: 63 KKNTRKPLGRILLKGDNITLMMNTG 87
K N RK +GR+LLKGDNITL+ N
Sbjct: 65 KTNVRKQIGRVLLKGDNITLIQNAA 89
>gi|351707608|gb|EHB10527.1| Small nuclear ribonucleoprotein E [Heterocephalus glaber]
Length = 92
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 71/83 (85%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+ +IQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNVRKIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>gi|348569444|ref|XP_003470508.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 71/85 (83%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+ KVQ++M QPINLIFR+LQ+ +RIQ+WL+EQ ++ IEG IIGFDEYMNLVLDDAEE+H
Sbjct: 7 TQKVQKVMVQPINLIFRYLQNSSRIQVWLYEQVNMHIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 63 KKNTRKPLGRILLKGDNITLMMNTG 87
K +RK LG I+LKGDNITL+ +
Sbjct: 67 KTKSRKQLGWIMLKGDNITLLQSVS 91
>gi|359691083|emb|CBH32487.1| small nuclear ribonucleoprotein polypeptide E [Oreochromis
mossambicus]
Length = 92
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 70/79 (88%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++ IEG IIGFDEYMNLVLDDAEEV +K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMGIEGCIIGFDEYMNLVLDDAEEVPMKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
RKPLGRI+LKGDNI L+
Sbjct: 69 KNRKPLGRIMLKGDNIPLL 87
>gi|348563323|ref|XP_003467457.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 70/79 (88%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+L++ +RIQ+WL+EQ ++RIEG I+GFDEYMNLVLDD EE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLENTSRIQVWLYEQVNMRIEGCIVGFDEYMNLVLDDEEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 69 KSRKQLGRIMLKGDNITLL 87
>gi|196001475|ref|XP_002110605.1| hypothetical protein TRIADDRAFT_22667 [Trichoplax adhaerens]
gi|190586556|gb|EDV26609.1| hypothetical protein TRIADDRAFT_22667 [Trichoplax adhaerens]
Length = 88
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 70/79 (88%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
+V+++M QPIN+IFRFLQ+K R+QIWL+EQ + RIEG I+GFDEYMNLVLDDA EV IK
Sbjct: 6 RVKKVMIQPINVIFRFLQNKTRVQIWLYEQTNTRIEGYILGFDEYMNLVLDDAAEVSIKN 65
Query: 65 NTRKPLGRILLKGDNITLM 83
N R+P+GRILLKGDNI+L+
Sbjct: 66 NQRRPIGRILLKGDNISLI 84
>gi|296216208|ref|XP_002754465.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
gi|296238888|ref|XP_002764351.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 92
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 71/83 (85%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ +++IEG IIGFDEYMNLVLD AEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDAAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI LKGDNITL+ +
Sbjct: 69 KSRKQLGRITLKGDNITLLQSVS 91
>gi|348586080|ref|XP_003478798.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 71/79 (89%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ++++IQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE H +
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEETHSRT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LG+I+LKGDNITL+
Sbjct: 69 KSRKQLGQIMLKGDNITLL 87
>gi|297469885|ref|XP_002707307.1| PREDICTED: small nuclear ribonucleoprotein E [Bos taurus]
gi|297492936|ref|XP_002699974.1| PREDICTED: small nuclear ribonucleoprotein E [Bos taurus]
gi|296470897|tpg|DAA13012.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 164
Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 71/83 (85%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++ IQ+WL+EQ ++RIEG IIGFDEY NLVLDDAEE+H K
Sbjct: 81 KVQKVMVQPINLIFRYLQNRSHIQVWLYEQVNMRIEGCIIGFDEYRNLVLDDAEEIHSKT 140
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 141 KSRKQLGRIMLKGDNITLIQSVS 163
>gi|322802255|gb|EFZ22651.1| hypothetical protein SINV_02639 [Solenopsis invicta]
Length = 429
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 53/73 (72%), Positives = 64/73 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++R+Q+WLFE +LRIEG I+GFDEYMNLVLDDAEE H K
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSRVQVWLFENVNLRIEGHIVGFDEYMNLVLDDAEEYHQKT 67
Query: 65 NTRKPLGRILLKG 77
RKPLGRI+LKG
Sbjct: 68 KNRKPLGRIMLKG 80
>gi|440908733|gb|ELR58720.1| hypothetical protein M91_20943, partial [Bos grunniens mutus]
Length = 91
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 71/83 (85%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++ IQ+WL+EQ ++RIEG IIGFDEY NLVLDDAEE+H K
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSHIQVWLYEQVNMRIEGCIIGFDEYRNLVLDDAEEIHSKT 67
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 68 KSRKQLGRIMLKGDNITLIQSVS 90
>gi|303288826|ref|XP_003063701.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454769|gb|EEH52074.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 90
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/83 (80%), Positives = 76/83 (91%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+TKVQRIMTQPINLIFRFLQ+KARIQIWL+E D+ +EGRIIGFDEYMNLVLDDAEEV+
Sbjct: 2 ATKVQRIMTQPINLIFRFLQTKARIQIWLYENTDVVVEGRIIGFDEYMNLVLDDAEEVNK 61
Query: 63 KKNTRKPLGRILLKGDNITLMMN 85
KK T+K +GRILLKGDNIT+M N
Sbjct: 62 KKGTKKTVGRILLKGDNITMMRN 84
>gi|312005|emb|CAA46626.1| small nuclear ribonucleoprotein E [Mus musculus]
gi|338269|gb|AAA36621.1| small nuclear ribonucleoprotein E, partial [Homo sapiens]
Length = 81
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 70/80 (87%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K +R
Sbjct: 1 KVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 60
Query: 68 KPLGRILLKGDNITLMMNTG 87
K LGRI+LKGDNITL+ +
Sbjct: 61 KQLGRIMLKGDNITLLQSVS 80
>gi|332376438|gb|AEE63359.1| unknown [Dendroctonus ponderosae]
Length = 97
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 71/79 (89%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++R+Q+WL+E LRIEG I+GFDEYMNLVLDDAEE+++K
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRVQVWLYENVRLRIEGHIVGFDEYMNLVLDDAEELYVKT 66
Query: 65 NTRKPLGRILLKGDNITLM 83
R+PLGRI+LKGDNIT++
Sbjct: 67 MHRRPLGRIMLKGDNITVI 85
>gi|426361276|ref|XP_004047844.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Gorilla gorilla gorilla]
Length = 92
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 71/83 (85%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ +L+IEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNLQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LG I+LKGDN TL+ +
Sbjct: 69 KSRKQLGWIMLKGDNSTLLQSVS 91
>gi|348572632|ref|XP_003472096.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 71/83 (85%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ++++IQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDN L+ +
Sbjct: 69 KSRKQLGRIMLKGDNTILLQSVS 91
>gi|397505808|ref|XP_003823438.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan paniscus]
Length = 92
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 70/79 (88%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+E +++IEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEPVNMQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNI L+
Sbjct: 69 KSRKQLGRIMLKGDNINLL 87
>gi|296476433|tpg|DAA18548.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 92
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 70/79 (88%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RI++WL+EQ ++R EG IIGFDE MNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIRVWLYEQVNMRTEGSIIGFDECMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 69 KSRKQLGRIMLKGDNITLL 87
>gi|114051397|ref|NP_001040370.1| small nuclear ribonucleoprotein E [Bombyx mori]
gi|95102658|gb|ABF51267.1| small nuclear ribonucleoprotein E [Bombyx mori]
Length = 95
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 71/85 (83%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
KVQ++M QPINLIFR+LQ+++R+QI L+E +LRIEG I+GFDEYMN+VLD+AEEVH
Sbjct: 5 GPPKVQKVMVQPINLIFRYLQNRSRVQIGLYENVNLRIEGHIVGFDEYMNMVLDEAEEVH 64
Query: 62 IKKNTRKPLGRILLKGDNITLMMNT 86
+K RK +GRI++KGDNITL+ N
Sbjct: 65 MKSKNRKQIGRIMMKGDNITLIQNV 89
>gi|115474803|ref|NP_001060998.1| Os08g0151400 [Oryza sativa Japonica Group]
gi|113622967|dbj|BAF22912.1| Os08g0151400, partial [Oryza sativa Japonica Group]
Length = 64
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 63/64 (98%)
Query: 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMM 84
ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE+++KK+TRK LGRILLKGDNITLMM
Sbjct: 1 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLMM 60
Query: 85 NTGK 88
NTGK
Sbjct: 61 NTGK 64
>gi|339522121|gb|AEJ84225.1| small nuclear ribonucleoprotein E [Capra hircus]
Length = 79
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 68/78 (87%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K +RK
Sbjct: 1 MVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQ 60
Query: 70 LGRILLKGDNITLMMNTG 87
LGRI+LKGDNITL+ +
Sbjct: 61 LGRIMLKGDNITLLQSVS 78
>gi|426257308|ref|XP_004022271.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Ovis aries]
Length = 92
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 70/79 (88%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+K++IQ+WL+EQ ++ IEG IIGFDEY+NLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNKSQIQVWLYEQVNIWIEGCIIGFDEYVNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LG I+LKGDNITL+
Sbjct: 69 KSRKQLGWIMLKGDNITLL 87
>gi|389584836|dbj|GAB67567.1| small nuclear ribonucleoprotein E [Plasmodium cynomolgi strain B]
Length = 94
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 74/90 (82%), Gaps = 2/90 (2%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 58
MA+T K+Q+IMTQPIN IFRF +K +QIWL+++ D RIEG+I+GFDEYMN+VLD++
Sbjct: 1 MAATNKKLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDTRIEGKILGFDEYMNMVLDESA 60
Query: 59 EVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
EV +KKNTRK LG+ILLKGD ITL+M K
Sbjct: 61 EVSVKKNTRKDLGKILLKGDTITLIMEAKK 90
>gi|156096492|ref|XP_001614280.1| small nuclear ribonucleoprotein E [Plasmodium vivax Sal-1]
gi|148803154|gb|EDL44553.1| small nuclear ribonucleoprotein E, putative [Plasmodium vivax]
Length = 94
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 74/90 (82%), Gaps = 2/90 (2%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 58
MA+T K+Q+IMTQPIN IFRF +K +QIWL+++ D RIEG+I+GFDEYMN+VLD++
Sbjct: 1 MAATNKKLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDTRIEGKILGFDEYMNMVLDESA 60
Query: 59 EVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
EV +KKNTRK LG+ILLKGD ITL+M K
Sbjct: 61 EVSLKKNTRKDLGKILLKGDTITLIMEAKK 90
>gi|340379367|ref|XP_003388198.1| PREDICTED: small nuclear ribonucleoprotein E-like [Amphimedon
queenslandica]
Length = 93
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 73/84 (86%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+ KVQ++M QPINLIFR+LQ+K+R+Q+WL+ ++++RIEG I GFDE+MNLV+ DAEEV++
Sbjct: 5 AQKVQKVMVQPINLIFRYLQNKSRVQVWLYGRQNMRIEGVITGFDEFMNLVMSDAEEVYL 64
Query: 63 KKNTRKPLGRILLKGDNITLMMNT 86
K TRK +GRILL+GDN+TL+M
Sbjct: 65 KTETRKRIGRILLRGDNVTLIMQA 88
>gi|392339645|ref|XP_003753865.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Rattus norvegicus]
Length = 169
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 68/84 (80%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQS +RIQ+WL EQ D +IEG IIGFDEYMNLV DDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQSGSRIQVWLCEQVDAQIEGCIIGFDEYMNLVSDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTGK 88
+R+ G I+LKGDNITL+ G+
Sbjct: 69 KSREQPGWIMLKGDNITLLQPAGR 92
>gi|346468665|gb|AEO34177.1| hypothetical protein [Amblyomma maculatum]
Length = 99
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 72/87 (82%), Gaps = 5/87 (5%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ++ARIQ+WL+E LRIEG IIGFDEYMNLVLDDAEE++ K
Sbjct: 10 KVQKVMVQPINLIFRYLQNRARIQVWLYENVALRIEGHIIGFDEYMNLVLDDAEEIYTKS 69
Query: 65 NTRKPL-----GRILLKGDNITLMMNT 86
RK + GRILLKG+NI+L+M+T
Sbjct: 70 KQRKQVAIPRPGRILLKGENISLIMST 96
>gi|225713140|gb|ACO12416.1| Small nuclear ribonucleoprotein E [Lepeophtheirus salmonis]
gi|290462431|gb|ADD24263.1| Small nuclear ribonucleoprotein E [Lepeophtheirus salmonis]
Length = 104
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 68/82 (82%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A+ KVQ++M QPINLIFR+LQ++ R+ +WL+E + RIEG I+GFDEYMNLVL DA EVH
Sbjct: 6 ANQKVQKVMVQPINLIFRYLQNRTRVSVWLYENVNTRIEGHIVGFDEYMNLVLADAAEVH 65
Query: 62 IKKNTRKPLGRILLKGDNITLM 83
+K+ T K +G I+LKGDNITL+
Sbjct: 66 VKRGTTKNVGTIMLKGDNITLI 87
>gi|428671949|gb|EKX72864.1| small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 89
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 69/79 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
K+Q+IMTQPIN IFRF S R+QIWL++Q + RIEGRI+GFDEYMN+VLDDAEEV +KK
Sbjct: 7 KLQKIMTQPINQIFRFFTSGTRVQIWLYDQPNTRIEGRIMGFDEYMNMVLDDAEEVTLKK 66
Query: 65 NTRKPLGRILLKGDNITLM 83
+TRK +GRILLKGD +TL+
Sbjct: 67 DTRKDIGRILLKGDCMTLI 85
>gi|354468865|ref|XP_003496871.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cricetulus
griseus]
gi|344247265|gb|EGW03369.1| Small nuclear ribonucleoprotein E [Cricetulus griseus]
Length = 92
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 68/77 (88%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++ IEG IIG DEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMWIEGCIIGLDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNIT 81
+RK LG+I+LKGDNIT
Sbjct: 69 KSRKQLGQIMLKGDNIT 85
>gi|242008943|ref|XP_002425253.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212509009|gb|EEB12515.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 96
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 68/82 (82%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
KVQ++M QPINLIFR+LQ+++R+Q+W++E RIEG I+GFDEYMNLVLDDAEE +
Sbjct: 5 GPAKVQKVMVQPINLIFRYLQNRSRVQVWIYENITTRIEGHIVGFDEYMNLVLDDAEEFN 64
Query: 62 IKKNTRKPLGRILLKGDNITLM 83
IK RK LGRI++KGDNITL+
Sbjct: 65 IKTKNRKELGRIMMKGDNITLI 86
>gi|170579069|ref|XP_001894662.1| small nuclear ribonucleoprotein E [Brugia malayi]
gi|158598633|gb|EDP36493.1| small nuclear ribonucleoprotein E, putative [Brugia malayi]
gi|402592161|gb|EJW86090.1| small nuclear ribonucleoprotein E [Wuchereria bancrofti]
Length = 89
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 71/85 (83%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S KVQ++M QPINLIFR+LQ+++RIQIWL+E RIEG IIGFDEYMN+VLD+AEEV++
Sbjct: 5 SGKVQKVMVQPINLIFRYLQNRSRIQIWLYEDITHRIEGYIIGFDEYMNVVLDEAEEVNM 64
Query: 63 KKNTRKPLGRILLKGDNITLMMNTG 87
K R +GRI+LKGDNITL+ + G
Sbjct: 65 KTKNRNKVGRIMLKGDNITLIQSIG 89
>gi|221058403|ref|XP_002259847.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193809920|emb|CAQ41114.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
Length = 96
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 72/86 (83%), Gaps = 2/86 (2%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 58
MA T K+Q+IMTQPIN IFRF +K +QIWL+++ D RIEG+I+GFDEYMN+VLD++
Sbjct: 1 MAVTNKKLQKIMTQPINQIFRFFTNKTMVQIWLYDKPDTRIEGKILGFDEYMNMVLDESA 60
Query: 59 EVHIKKNTRKPLGRILLKGDNITLMM 84
EV +KKNTRK LG+ILLKGD ITL+M
Sbjct: 61 EVSVKKNTRKDLGKILLKGDTITLIM 86
>gi|441598236|ref|XP_004087442.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Nomascus leucogenys]
Length = 92
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 71/83 (85%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
+VQR+M QPINLIFR+L++++ IQ+WL+EQ +++IEG IIGFD+YMNLVLDDAEE+H K
Sbjct: 9 RVQRVMVQPINLIFRYLENRSWIQVWLYEQVNMQIEGCIIGFDKYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNI L+ +
Sbjct: 69 KSRKQLGRIMLKGDNIPLLQSVS 91
>gi|299470361|emb|CBN78410.1| Small nuclear ribonucleoprotein-associated protein E [Ectocarpus
siliculosus]
Length = 97
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 69/78 (88%)
Query: 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN 65
V+++MTQPI+LIFRFLQ++ R+QIWL+E +RIEG+I+GFDEYMNLVLD+AEEV +K +
Sbjct: 15 VKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKND 74
Query: 66 TRKPLGRILLKGDNITLM 83
RK LGRI+LKGD ITLM
Sbjct: 75 ERKQLGRIMLKGDTITLM 92
>gi|254281298|ref|NP_001156839.1| small nuclear ribonucleoprotein E [Acyrthosiphon pisum]
Length = 93
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 71/81 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR LQ++A++Q+WL E+ LRIEG I+GFDEYMNLVLD+A EV+ K
Sbjct: 7 KVQKVMVQPINLIFRHLQNRAKVQVWLQEKIHLRIEGHIVGFDEYMNLVLDEACEVNTKV 66
Query: 65 NTRKPLGRILLKGDNITLMMN 85
++RKP+GRILLKG+NITL+ N
Sbjct: 67 DSRKPVGRILLKGENITLIQN 87
>gi|440889654|gb|ELR44674.1| hypothetical protein M91_20945 [Bos grunniens mutus]
Length = 92
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 69/79 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RI++ L+EQ ++R EG IIGFDE MNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIRVRLYEQVNMRTEGSIIGFDECMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 69 KSRKQLGRIMLKGDNITLL 87
>gi|167533668|ref|XP_001748513.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773032|gb|EDQ86677.1| predicted protein [Monosiga brevicollis MX1]
Length = 128
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 66/79 (83%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
+++M QPINL+FRFLQ ++++ IWL+E K + IEG I+GFDEYMNLV+D AEEV+ K T
Sbjct: 8 KKVMVQPINLMFRFLQKRSKVSIWLYEHKHMSIEGVIVGFDEYMNLVMDSAEEVNSKAQT 67
Query: 67 RKPLGRILLKGDNITLMMN 85
R+PLGRILLKGDNI LM N
Sbjct: 68 RQPLGRILLKGDNICLMQN 86
>gi|392346855|ref|XP_003749650.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 66/79 (83%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQS +RIQ+WL EQ D +IEG IIGFDEYMNLV DDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQSGSRIQVWLCEQVDAQIEGCIIGFDEYMNLVSDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+R+ G I+LKGDNITL+
Sbjct: 69 KSREQPGWIMLKGDNITLL 87
>gi|312078394|ref|XP_003141719.1| small nuclear ribonucleoprotein E [Loa loa]
gi|307763117|gb|EFO22351.1| small nuclear ribonucleoprotein E [Loa loa]
Length = 89
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 70/83 (84%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQIWL+E RIEG IIGFDEYMN+VLD+AEEV++K
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRIQIWLYEDITHRIEGYIIGFDEYMNVVLDEAEEVNMKT 66
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
R +GRI+LKGDNITL+ + G
Sbjct: 67 KNRNKVGRIMLKGDNITLIQSIG 89
>gi|124513718|ref|XP_001350215.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|23615632|emb|CAD52624.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 93
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 72/86 (83%), Gaps = 2/86 (2%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 58
MA+T K+Q+IMTQPIN IFRF +K +QIWL+++ D+RIEG I+GFDEYMN+VLD +
Sbjct: 1 MATTNKKLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDMRIEGIILGFDEYMNMVLDQTK 60
Query: 59 EVHIKKNTRKPLGRILLKGDNITLMM 84
E+ +KKNT+K LG+ILLKGD ITL+M
Sbjct: 61 EISVKKNTKKELGKILLKGDTITLIM 86
>gi|390477421|ref|XP_002760651.2| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 79
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 65/74 (87%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
M P NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K +RK
Sbjct: 1 MGHPKNLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQ 60
Query: 70 LGRILLKGDNITLM 83
LGRI+LKGDNITL+
Sbjct: 61 LGRIMLKGDNITLL 74
>gi|403351354|gb|EJY75167.1| putative small nuclear ribonucleoprotein E [Oxytricha trifallax]
Length = 91
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 70/81 (86%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
K+Q++M +PI LI++F Q+K+R++IWL+E DLRIEG+IIGFDEYMN VLDDAEE++ KK
Sbjct: 8 KLQKLMIRPIFLIYKFFQTKSRVEIWLYENADLRIEGKIIGFDEYMNTVLDDAEEIYQKK 67
Query: 65 NTRKPLGRILLKGDNITLMMN 85
R+ LGRI+LKGDNI+L+ N
Sbjct: 68 GNRRKLGRIILKGDNISLICN 88
>gi|341891331|gb|EGT47266.1| hypothetical protein CAEBREN_05081 [Caenorhabditis brenneri]
gi|341897649|gb|EGT53584.1| hypothetical protein CAEBREN_23787 [Caenorhabditis brenneri]
Length = 90
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 70/83 (84%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M++ K+Q++M QP+NLIFR+LQ++ R+QIWL+E R+EG IIGFDE+MN+V D+AEEV
Sbjct: 1 MSARKLQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
++K N R +GRILLKGDNITL+
Sbjct: 61 NMKTNARNKIGRILLKGDNITLI 83
>gi|225717902|gb|ACO14797.1| Probable small nuclear ribonucleoprotein E [Caligus clemensi]
Length = 94
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 67/82 (81%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
+ KVQ++M QPINLIFR+LQ++ R+ +WL+E + +IEG I+GFDEYMNLVL DA EVH
Sbjct: 6 GNQKVQKVMVQPINLIFRYLQNRTRVSVWLYENVNTKIEGHIVGFDEYMNLVLADAAEVH 65
Query: 62 IKKNTRKPLGRILLKGDNITLM 83
+KK T K +G I+LKGDNITL+
Sbjct: 66 LKKGTTKNVGTIMLKGDNITLI 87
>gi|397521006|ref|XP_003830597.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan paniscus]
Length = 92
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 69/83 (83%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
+VQR+M PINLIFR+LQ+++ IQ+WL+EQ ++ IEG IIGFD+YMNLVLDDAEE+H K
Sbjct: 9 RVQRVMVLPINLIFRYLQNRSWIQVWLYEQVNMWIEGCIIGFDKYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNI L+ +
Sbjct: 69 KSRKQLGRIILKGDNIPLLQSVS 91
>gi|70954423|ref|XP_746259.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|56526807|emb|CAH78091.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi
chabaudi]
Length = 88
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 73/86 (84%), Gaps = 2/86 (2%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 58
MA+T K+Q+IMTQPIN IFRF ++ +QIWL+++ RIEG+I+GFDEYMN+VLD+++
Sbjct: 1 MATTNKKLQKIMTQPINQIFRFFTNQTVVQIWLYDKPHTRIEGKILGFDEYMNMVLDESK 60
Query: 59 EVHIKKNTRKPLGRILLKGDNITLMM 84
E+ IKKNT+K LG+ILLKGD ITL+M
Sbjct: 61 EISIKKNTKKELGKILLKGDTITLIM 86
>gi|68071133|ref|XP_677480.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|82596003|ref|XP_726082.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23481340|gb|EAA17647.1| small nuclear ribonucleoprotein homolog [Plasmodium yoelii
yoelii]
gi|56497614|emb|CAH98978.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 88
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 73/86 (84%), Gaps = 2/86 (2%)
Query: 1 MAST--KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 58
MA+T K+Q+IMTQPIN IFRF ++ +QIWL+++ RIEG+I+GFDEYMN+VLD+++
Sbjct: 1 MATTNKKLQKIMTQPINQIFRFFTNQTVVQIWLYDKPHTRIEGKILGFDEYMNMVLDESK 60
Query: 59 EVHIKKNTRKPLGRILLKGDNITLMM 84
E+ +KKNT+K LG+ILLKGD ITL+M
Sbjct: 61 EISVKKNTKKELGKILLKGDTITLIM 86
>gi|313228047|emb|CBY23197.1| unnamed protein product [Oikopleura dioica]
Length = 90
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 68/79 (86%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINL+FRF Q K R+QIWL++ +LR+EG I+GFDEYMNLVLDD EE+H+K
Sbjct: 7 KVQKVMVQPINLVFRFFQKKIRVQIWLYDVVNLRLEGIIVGFDEYMNLVLDDVEEMHVKT 66
Query: 65 NTRKPLGRILLKGDNITLM 83
+ ++ +G+ILLKGDNITL+
Sbjct: 67 HFKRNVGKILLKGDNITLI 85
>gi|395531172|ref|XP_003767656.1| PREDICTED: uncharacterized protein LOC100930096 [Sarcophilus
harrisii]
Length = 226
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 64/71 (90%)
Query: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 74
NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K +RK LGRI+
Sbjct: 153 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 212
Query: 75 LKGDNITLMMN 85
LKGDNITL+ +
Sbjct: 213 LKGDNITLLQS 223
>gi|313239283|emb|CBY14233.1| unnamed protein product [Oikopleura dioica]
gi|313245445|emb|CBY40176.1| unnamed protein product [Oikopleura dioica]
Length = 90
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 68/79 (86%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINL+FRF Q K R+QIWL++ ++R+EG I+GFDEYMNLVLDD EE+H+K
Sbjct: 7 KVQKVMVQPINLVFRFFQKKIRVQIWLYDVINVRLEGIIVGFDEYMNLVLDDVEEMHVKT 66
Query: 65 NTRKPLGRILLKGDNITLM 83
+ +K +G+ILLKGDNITL+
Sbjct: 67 HFKKNVGKILLKGDNITLI 85
>gi|324518207|gb|ADY47035.1| Small nuclear ribonucleoprotein E [Ascaris suum]
Length = 128
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 69/85 (81%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+ KVQ++M QPINLIFR+LQ+++RIQIWL+E RIEG II FDEYMN+VLD+AEEV++
Sbjct: 44 AGKVQKVMVQPINLIFRYLQNRSRIQIWLYEDVTHRIEGYIIWFDEYMNVVLDEAEEVNL 103
Query: 63 KKNTRKPLGRILLKGDNITLMMNTG 87
K R +GRILLKGDNITL+ +
Sbjct: 104 KTKNRNKVGRILLKGDNITLIQSVN 128
>gi|417395580|gb|JAA44844.1| Putative small nuclear ribonucleoprotein e [Desmodus rotundus]
Length = 92
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 68/83 (81%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
+VQ++M QPINLI R+LQ +++IQ+WL+EQ ++ IEG ++GFDEYMNLVLDDAEE+H K
Sbjct: 9 RVQKVMVQPINLIVRYLQDRSQIQLWLYEQVNVWIEGYVVGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGR +LKG+NI L+ N
Sbjct: 69 KSRKQLGRSMLKGNNIILLQNVS 91
>gi|431900697|gb|ELK08143.1| Small nuclear ribonucleoprotein E [Pteropus alecto]
Length = 79
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 66/78 (84%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
M QPINLIFR+LQ++++IQ+WL+EQ ++RIE I+GFDEYMNLVLDDAEE+H K +RK
Sbjct: 1 MVQPINLIFRYLQNRSQIQVWLYEQVNMRIESCIVGFDEYMNLVLDDAEEIHSKTKSRKQ 60
Query: 70 LGRILLKGDNITLMMNTG 87
+G I+LKGDNITL+ +
Sbjct: 61 VGWIMLKGDNITLLQSVS 78
>gi|119611901|gb|EAW91495.1| small nuclear ribonucleoprotein polypeptide E, isoform CRA_b
[Homo sapiens]
Length = 84
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 63/69 (91%)
Query: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 74
NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K +RK LGRI+
Sbjct: 11 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 70
Query: 75 LKGDNITLM 83
LKGDNITL+
Sbjct: 71 LKGDNITLL 79
>gi|410956998|ref|XP_003985122.1| PREDICTED: LOW QUALITY PROTEIN: putative small nuclear
ribonucleoprotein polypeptide E-like protein 1-like
[Felis catus]
Length = 103
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 67/83 (80%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++ IQ+W +EQ ++ IE II FDEY+NLVLDDAEE+H K
Sbjct: 18 KVQKVMVQPINLIFRYLQNRSWIQVWFYEQVNMXIERCIIDFDEYVNLVLDDAEEIHSKT 77
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL +
Sbjct: 78 KSRKQLGRIMLKGDNITLFQSVS 100
>gi|390458031|ref|XP_003732042.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 89
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 68/79 (86%), Gaps = 3/79 (3%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLI L ++++IQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLI---LTNRSQIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 65
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 66 KSRKQLGRIMLKGDNITLL 84
>gi|354484098|ref|XP_003504228.1| PREDICTED: hypothetical protein LOC100764959 [Cricetulus griseus]
Length = 195
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 68/79 (86%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
Q++M QPINL FR+LQ+ +RIQ+ L+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K +
Sbjct: 114 QKVMVQPINLTFRYLQNWSRIQVRLYEQVNIRIEGCIIGFDEYMNLVLDDAEEIHSKTKS 173
Query: 67 RKPLGRILLKGDNITLMMN 85
RK LGRI+L+GDN+TL+ +
Sbjct: 174 RKQLGRIMLEGDNMTLLQS 192
>gi|148707697|gb|EDL39644.1| small nuclear ribonucleoprotein E, isoform CRA_b [Mus musculus]
Length = 86
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 63/69 (91%)
Query: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 74
NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K +RK LGRI+
Sbjct: 13 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 72
Query: 75 LKGDNITLM 83
LKGDNITL+
Sbjct: 73 LKGDNITLL 81
>gi|332845410|ref|XP_003315041.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan troglodytes]
Length = 92
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 68/83 (81%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
+VQR+ PINLIFR+LQ+++ IQ+WL+EQ ++ IEG IIGFD+YMNLVLDDAEE+H K
Sbjct: 9 RVQRVTVLPINLIFRYLQNRSWIQVWLYEQVNMWIEGCIIGFDKYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNI L+ +
Sbjct: 69 KSRKQLGRIILKGDNIPLLQSVS 91
>gi|452822994|gb|EME30008.1| small nuclear ribonucleoprotein E [Galdieria sulphuraria]
Length = 85
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 66/77 (85%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
+IMTQPINLIFRFLQ++ ++ IWL+E+ + RIEGRI GFDEYMNLVLD+A E ++KKNT
Sbjct: 4 SKIMTQPINLIFRFLQNRTKVVIWLYEETNFRIEGRISGFDEYMNLVLDEAVEWNVKKNT 63
Query: 67 RKPLGRILLKGDNITLM 83
R LGRILLKGD ITL+
Sbjct: 64 RINLGRILLKGDTITLI 80
>gi|296473647|tpg|DAA15762.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 92
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 65/78 (83%)
Query: 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN 65
VQ+ QPINLIFR LQ+++RIQ+WL+EQ ++ EG IGFDEYMNLVLDDAE++H K
Sbjct: 10 VQKGQVQPINLIFRCLQNRSRIQVWLYEQVNMWTEGCTIGFDEYMNLVLDDAEDIHSKTK 69
Query: 66 TRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNITL+
Sbjct: 70 SRKQLGRIMLKGDNITLL 87
>gi|71027525|ref|XP_763406.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
gi|85000711|ref|XP_955074.1| small nuclear ribonucleoprotein (E) [Theileria annulata strain
Ankara]
gi|65303220|emb|CAI75598.1| small nuclear ribonucleoprotein (E), putative [Theileria
annulata]
gi|68350359|gb|EAN31123.1| small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 91
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 65/79 (82%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
K+Q+IMTQPIN IFRF R+QIWLF+Q + +IEG I GFDEYMN+VLD+A EVH+KK
Sbjct: 7 KLQKIMTQPINQIFRFFTGGTRVQIWLFDQPNTKIEGTIRGFDEYMNMVLDNATEVHVKK 66
Query: 65 NTRKPLGRILLKGDNITLM 83
N +K +GRILLKGD +TL+
Sbjct: 67 NVKKDVGRILLKGDCMTLI 85
>gi|326933691|ref|XP_003212934.1| PREDICTED: small nuclear ribonucleoprotein E-like [Meleagris
gallopavo]
Length = 85
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 63/69 (91%)
Query: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 74
NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K +RK LGRI+
Sbjct: 12 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 71
Query: 75 LKGDNITLM 83
LKGDNITL+
Sbjct: 72 LKGDNITLL 80
>gi|403223071|dbj|BAM41202.1| small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 94
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 66/79 (83%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
K+Q+IMTQPIN IFRF R+QIWLFEQ ++IEG I GFDEYMN+VLDDA+EV++KK
Sbjct: 10 KLQKIMTQPINQIFRFFTGGTRVQIWLFEQPYMKIEGTIRGFDEYMNMVLDDAQEVYMKK 69
Query: 65 NTRKPLGRILLKGDNITLM 83
N +K +GRILLKGD +TL+
Sbjct: 70 NLKKDVGRILLKGDCMTLI 88
>gi|268571317|ref|XP_002641005.1| C. briggsae CBR-SNR-6 protein [Caenorhabditis briggsae]
gi|190360255|sp|A8XDT0.1|RUXE_CAEBR RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
Length = 90
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 68/83 (81%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+ K+Q++M QP+NLIFR+LQ++ R+QIWL+E R+EG IIGFDE+MN+V D+AEEV
Sbjct: 1 MSQRKIQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
++K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>gi|392334358|ref|XP_002725436.2| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|392355007|ref|XP_002728648.2| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 67/82 (81%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QP +LI R+LQ+++RIQ+WL+EQ ++ IEG IIGFDEYMNLVLDD EE+H K
Sbjct: 9 KVQKVMVQPSSLIIRYLQNRSRIQVWLYEQVNMWIEGCIIGFDEYMNLVLDDTEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNT 86
+ K LG+I+LKGDNI L+ +
Sbjct: 69 KSGKQLGQIMLKGDNIALLQSV 90
>gi|338259|gb|AAB59365.1| small nuclear ribonucleic protein, partial [Homo sapiens]
Length = 92
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 64/73 (87%)
Query: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 74
NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K +RK LGRI+
Sbjct: 19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 78
Query: 75 LKGDNITLMMNTG 87
LKGDNITL+ +
Sbjct: 79 LKGDNITLLQSVS 91
>gi|426386751|ref|XP_004059844.1| PREDICTED: small nuclear ribonucleoprotein E-like [Gorilla
gorilla gorilla]
Length = 92
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 69/83 (83%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M Q INLIFR+LQ+++R+Q+ L+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMAQLINLIFRYLQNRSRVQVRLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGR++LK D+ TL+ +
Sbjct: 69 KSRKQLGRLMLKRDDSTLLQSVS 91
>gi|308470011|ref|XP_003097241.1| CRE-SNR-6 protein [Caenorhabditis remanei]
gi|308240461|gb|EFO84413.1| CRE-SNR-6 protein [Caenorhabditis remanei]
Length = 90
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 68/83 (81%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+ K+Q++M QP+NLIFR+LQ++ R+QIWL+E R+EG IIGFDE+MN+V D+AEEV
Sbjct: 1 MSQRKLQKVMVQPVNLIFRYLQNRTRVQIWLYEDITHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
++K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>gi|290989307|ref|XP_002677279.1| predicted protein [Naegleria gruberi]
gi|284090886|gb|EFC44535.1| predicted protein [Naegleria gruberi]
Length = 89
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 66/79 (83%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
K Q++MTQPI +F +L+ +RIQIWL+E DLRIEG I+GFDEYMN+VLD+ EE++ KK
Sbjct: 3 KKQKMMTQPITQVFEYLKQGSRIQIWLYENTDLRIEGNILGFDEYMNIVLDETEEIYTKK 62
Query: 65 NTRKPLGRILLKGDNITLM 83
+ RK +GRILLKGDNI+L+
Sbjct: 63 SQRKKIGRILLKGDNISLI 81
>gi|339247003|ref|XP_003375135.1| small nuclear ribonucleoprotein E [Trichinella spiralis]
gi|316971586|gb|EFV55343.1| small nuclear ribonucleoprotein E [Trichinella spiralis]
Length = 93
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 65/82 (79%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
KVQ++M QPINL+FRFLQS R+Q WL+E LRI+G I+GFDE+MN+VL++AEEV
Sbjct: 7 GQPKVQKVMVQPINLVFRFLQSHCRVQFWLYENTHLRIDGYIVGFDEFMNIVLEEAEEVD 66
Query: 62 IKKNTRKPLGRILLKGDNITLM 83
+K R+ +GRILLKG+ ITL+
Sbjct: 67 LKSKQRRQIGRILLKGECITLI 88
>gi|17556060|ref|NP_499620.1| Protein SNR-6 [Caenorhabditis elegans]
gi|29428070|sp|Q9XTU6.1|RUXE_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
gi|3979991|emb|CAB11551.1| Protein SNR-6 [Caenorhabditis elegans]
Length = 90
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 68/83 (81%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M++ K+ ++M QP+NLIFR+LQ++ R+QIWL+E R+EG IIGFDE+MN+V D+AEEV
Sbjct: 1 MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
++K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>gi|412985477|emb|CCO18923.1| small nuclear ribonucleoprotein E [Bathycoccus prasinos]
Length = 91
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 6/91 (6%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQK---DLRIEGRIIGFDEYMNLVLDDAEE 59
+TKVQRIMTQPINLIFRFLQ+K+R+QIWL+E D+ +EG+I+GFDEYMNLVLDD EE
Sbjct: 2 ATKVQRIMTQPINLIFRFLQTKSRVQIWLYEHAANGDV-LEGQIVGFDEYMNLVLDDCEE 60
Query: 60 VH--IKKNTRKPLGRILLKGDNITLMMNTGK 88
V R +GR+LLKGD++T+M+ K
Sbjct: 61 VKRVGGAKQRTSVGRVLLKGDSVTMMVKVDK 91
>gi|296222762|ref|XP_002757308.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 97
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 67/79 (84%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ++ IQ+W +EQ ++RIEG +IG D+YMNLVL DAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRLWIQVWPYEQVNMRIEGCVIGIDKYMNLVLGDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LG+++LKGDN+TL+
Sbjct: 69 KSRKRLGQMMLKGDNVTLL 87
>gi|395838983|ref|XP_003792383.1| PREDICTED: small nuclear ribonucleoprotein E [Otolemur garnettii]
Length = 90
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 61/68 (89%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGR 72
+RK LG+
Sbjct: 69 KSRKQLGK 76
>gi|399218257|emb|CCF75144.1| unnamed protein product [Babesia microti strain RI]
Length = 89
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 65/79 (82%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
++Q+IMTQPIN IFR S R+QIWLF++ +++IEGRI GFDEYMN+VLDDAE V+ K
Sbjct: 7 RLQKIMTQPINQIFRLFTSGVRVQIWLFDEPNIKIEGRIKGFDEYMNMVLDDAESVNQKH 66
Query: 65 NTRKPLGRILLKGDNITLM 83
TRK LG+ILLKGD +TL+
Sbjct: 67 KTRKSLGKILLKGDCMTLI 85
>gi|390459179|ref|XP_003732244.1| PREDICTED: LOW QUALITY PROTEIN: putative small nuclear
ribonucleoprotein polypeptide E-like protein 1-like
[Callithrix jacchus]
Length = 115
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 65/79 (82%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ+IM QPINLIFR+LQ+ ++I++WL+E+ ++ IEG I+ FDEYMNLVLDDAEE H K
Sbjct: 32 KVQKIMVQPINLIFRYLQNGSQIEVWLYERVNIXIEGCIVSFDEYMNLVLDDAEESHSKT 91
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK GRI+LKGD+ T +
Sbjct: 92 KSRKQXGRIMLKGDDSTWL 110
>gi|358056368|dbj|GAA97735.1| hypothetical protein E5Q_04414 [Mixia osmundae IAM 14324]
Length = 91
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 71/90 (78%), Gaps = 4/90 (4%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + R+M QPIN+IF++LQ+ R+Q+WL++ D R+EG+IIGFDE+MN+VLDDAEE++I
Sbjct: 2 SGRQSRVMVQPINVIFKYLQAGTRVQLWLYDILDFRLEGKIIGFDEFMNVVLDDAEEIYI 61
Query: 63 KKN----TRKPLGRILLKGDNITLMMNTGK 88
K+ RK LGR+LLKG+NITL+ T K
Sbjct: 62 KRKDDRPERKSLGRLLLKGENITLIQATTK 91
>gi|409083288|gb|EKM83645.1| hypothetical protein AGABI1DRAFT_110295 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426201658|gb|EKV51581.1| hypothetical protein AGABI2DRAFT_189809 [Agaricus bisporus var.
bisporus H97]
Length = 87
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 70/82 (85%), Gaps = 1/82 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IF+ LQ++++I +WL++ ++RIEGRIIGFDE+MNLV+DDA EV++
Sbjct: 2 SGRQQRVMVQPINVIFKNLQTRSKISVWLYDNIEMRIEGRIIGFDEFMNLVIDDAVEVYV 61
Query: 63 KK-NTRKPLGRILLKGDNITLM 83
K+ RK LGRILLKGDNITL+
Sbjct: 62 KEAKPRKELGRILLKGDNITLI 83
>gi|388582050|gb|EIM22356.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/84 (60%), Positives = 66/84 (78%), Gaps = 3/84 (3%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + Q++M QPIN+IF++LQ + +IQIWL++ D R+EGRIIGFDEYMN++LDD EEV
Sbjct: 2 SGRKQQVMVQPINVIFKYLQQRTKIQIWLYDNVDCRLEGRIIGFDEYMNVILDDVEEVFY 61
Query: 63 KKNTRKP---LGRILLKGDNITLM 83
K +P LGRILLKGDNITL+
Sbjct: 62 GKKQSQPRNSLGRILLKGDNITLI 85
>gi|268637717|ref|XP_002649120.1| small nuclear ribonucleoprotein E [Dictyostelium discoideum AX4]
gi|256012871|gb|EEU04068.1| small nuclear ribonucleoprotein E [Dictyostelium discoideum AX4]
Length = 92
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 65/87 (74%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+ + +M +PI LIF+FL K +QI LFE D+RI+G IIG DEYMNLVLD+A E+
Sbjct: 1 MSRHHAKSVMIKPITLIFKFLTQKTEVQIMLFENTDIRIQGVIIGLDEYMNLVLDNASEL 60
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTG 87
IKK T+KPLG+ILLKGDNI+L++
Sbjct: 61 SIKKKTKKPLGQILLKGDNISLVLEAA 87
>gi|402224412|gb|EJU04475.1| LSM-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 93
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 67/83 (80%), Gaps = 2/83 (2%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IF+ LQ + +QIWL++ ++RIEGRIIGFDE+MN+VLDDA EV +
Sbjct: 2 SGRQQRVMVQPINVIFKNLQQRVPVQIWLYDNVEMRIEGRIIGFDEFMNVVLDDASEVFV 61
Query: 63 KKNTRKP--LGRILLKGDNITLM 83
+ ++ P LGRILLKGDNITL+
Sbjct: 62 SEESKSPRSLGRILLKGDNITLI 84
>gi|156083891|ref|XP_001609429.1| small nuclear ribonucleoprotein E [Babesia bovis T2Bo]
gi|154796680|gb|EDO05861.1| small nuclear ribonucleoprotein E, putative [Babesia bovis]
Length = 89
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 65/79 (82%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
K+Q+IMTQPIN IFRF S R+QIWL++Q +L+IEG+I GFDEYMN+VL+D EE+++KK
Sbjct: 7 KLQQIMTQPINQIFRFFTSGTRVQIWLYDQPNLKIEGKIRGFDEYMNMVLEDVEELYVKK 66
Query: 65 NTRKPLGRILLKGDNITLM 83
R+ LG ILLKGD + L+
Sbjct: 67 QERRALGTILLKGDAMALI 85
>gi|444724508|gb|ELW65111.1| Small nuclear ribonucleoprotein E [Tupaia chinensis]
Length = 92
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 64/83 (77%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
K Q++M QPINLI R LQ+++R Q+WL+EQ ++ IEG II FDEY+NLV DDAEE H K
Sbjct: 9 KAQKVMVQPINLILRNLQNRSRTQVWLYEQVNIWIEGCIISFDEYVNLVSDDAEESHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+L GDNITL+ +
Sbjct: 69 KSRKQLGRIMLIGDNITLLQSVS 91
>gi|164663173|ref|XP_001732708.1| hypothetical protein MGL_0483 [Malassezia globosa CBS 7966]
gi|159106611|gb|EDP45494.1| hypothetical protein MGL_0483 [Malassezia globosa CBS 7966]
Length = 87
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IFR LQ + R+ +WL++ + R+EG+IIGFDE+MN+ L DAEEVH+
Sbjct: 2 SGRQQRVMIQPINVIFRHLQQQTRVSLWLYDNVEYRLEGKIIGFDEFMNVTLADAEEVHM 61
Query: 63 K-KNTRKPLGRILLKGDNITLM 83
+ RKPLGR+LLKGDNITL+
Sbjct: 62 NAQKDRKPLGRLLLKGDNITLI 83
>gi|299755906|ref|XP_002912145.1| hypothetical protein CC1G_13677 [Coprinopsis cinerea
okayama7#130]
gi|298411435|gb|EFI28651.1| hypothetical protein CC1G_13677 [Coprinopsis cinerea
okayama7#130]
Length = 87
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 68/82 (82%), Gaps = 1/82 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S++ QR+M QPIN+IF+ LQ K ++ IWL++ ++R+EGRIIGFDE+MNLV+DDA EV++
Sbjct: 2 SSRQQRVMVQPINVIFKNLQQKTKVVIWLYDNIEMRLEGRIIGFDEFMNLVIDDAAEVYV 61
Query: 63 K-KNTRKPLGRILLKGDNITLM 83
K R+ LGRILLKGDNITL+
Sbjct: 62 KDAKPRRELGRILLKGDNITLI 83
>gi|219127194|ref|XP_002183825.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404548|gb|EEC44494.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 100
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 67/83 (80%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M +V+++MT PIN+IF LQ K+R+++WL+E L+IEG+IIGFDEYMN+V+DDA E+
Sbjct: 1 MPPKRVKKVMTLPINVIFSHLQKKSRVRLWLYEDSRLQIEGQIIGFDEYMNMVMDDAVEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
KKN R+ +GRILLKGD +T++
Sbjct: 61 DSKKNVRQEVGRILLKGDAVTMI 83
>gi|332212934|ref|XP_003255575.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Nomascus leucogenys]
Length = 94
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 64/83 (77%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ++ IQ+W++EQ +L IIGFDE NLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRPWIQVWVYEQVNLWTGSFIIGFDECKNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGD ITL+ +
Sbjct: 69 KSRKQLGRIMLKGDTITLLQSVS 91
>gi|281338088|gb|EFB13672.1| hypothetical protein PANDA_003444 [Ailuropoda melanoleuca]
Length = 83
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 65/79 (82%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
+V+++M QPINL R+LQ+++RI +WL+EQ ++R EG IIGFDE MNL+LDDAEE+ K
Sbjct: 5 RVRKVMVQPINLTLRYLQNRSRIWVWLYEQVNMRKEGCIIGFDESMNLILDDAEEILSKT 64
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LGRI+LKGDNIT +
Sbjct: 65 KSRKQLGRIMLKGDNITFL 83
>gi|60692530|gb|AAX30632.1| SJCHGC06135 protein [Schistosoma japonicum]
gi|226470320|emb|CAX70440.1| Small nuclear ribonucleoprotein E [Schistosoma japonicum]
gi|226485471|emb|CAX75155.1| Small nuclear ribonucleoprotein E [Schistosoma japonicum]
gi|226485473|emb|CAX75156.1| Small nuclear ribonucleoprotein E [Schistosoma japonicum]
gi|226485475|emb|CAX75157.1| Small nuclear ribonucleoprotein E [Schistosoma japonicum]
Length = 89
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 62/79 (78%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
+ + + PI +++ FLQ KAR+++WL+EQ +LRIEG IIGFDEYMNLVL DA E H+K
Sbjct: 7 RSHKAIQPPIGVVYNFLQKKARVRVWLYEQCNLRIEGVIIGFDEYMNLVLADACERHMKS 66
Query: 65 NTRKPLGRILLKGDNITLM 83
+KPLGRILLKG+ ITL+
Sbjct: 67 GAKKPLGRILLKGETITLV 85
>gi|109018143|ref|XP_001098283.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Macaca mulatta]
Length = 92
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 63/77 (81%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ+ +T+PI+LIFRFLQ++ +IQ+WL+EQ ++ IEG I GFDEYMN VL DAEE++ K
Sbjct: 9 KVQKAVTEPIDLIFRFLQNRFQIQVWLYEQVNIWIEGCITGFDEYMNFVLVDAEEIYSKT 68
Query: 65 NTRKPLGRILLKGDNIT 81
RK LG I+LKGDNIT
Sbjct: 69 KLRKQLGWIMLKGDNIT 85
>gi|260947628|ref|XP_002618111.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847983|gb|EEQ37447.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 88
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 66/83 (79%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+S K ++ M PINLIF++LQ ++ + IWL+EQ RI+G++ GFDE+MN+V+D+AEE+
Sbjct: 1 MSSVKSKKSMLPPINLIFKYLQQQSVVTIWLYEQTQSRIQGKVRGFDEFMNIVIDEAEEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
K +R+ LGRILLKGDNITL+
Sbjct: 61 STKDGSRETLGRILLKGDNITLI 83
>gi|254567830|ref|XP_002491025.1| Core Sm protein Sm E [Komagataella pastoris GS115]
gi|238030822|emb|CAY68745.1| Core Sm protein Sm E [Komagataella pastoris GS115]
Length = 88
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 68/83 (81%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+S++ Q++M PINL+F+FLQ ++ +QIWL+EQ + RI G I GFDE+MN+V+D+A E+
Sbjct: 1 MSSSRTQKVMVPPINLMFKFLQQQSTVQIWLYEQNNTRINGIIKGFDEFMNVVVDEAIEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
++K ++ LGR+LLKGDNITL+
Sbjct: 61 NLKTQKQRKLGRLLLKGDNITLI 83
>gi|389751015|gb|EIM92088.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 87
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 68/82 (82%), Gaps = 1/82 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IF+ LQ + ++ +WL++ ++RIEGRIIGFDE+MN+V+DDA EV++
Sbjct: 2 SGRQQRVMVQPINVIFKNLQQRTKVVVWLYDNIEMRIEGRIIGFDEFMNIVIDDAAEVYV 61
Query: 63 KK-NTRKPLGRILLKGDNITLM 83
K+ R+ LGRI+LKGDNITL+
Sbjct: 62 KEAKPRRELGRIMLKGDNITLI 83
>gi|353227274|emb|CCA77787.1| probable small nuclear ribonucleoprotein E [Piriformospora indica
DSM 11827]
Length = 87
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + R+M QPIN+IF+ LQ K ++ IWL++ ++RIEGRIIGFDEYMN+V+DDA EV+
Sbjct: 2 SGRQTRVMVQPINVIFKHLQQKTKVVIWLYDNVEMRIEGRIIGFDEYMNVVMDDATEVYT 61
Query: 63 KKNTRK-PLGRILLKGDNITLM 83
K+ PLGRILLKG+NITL+
Sbjct: 62 KEGRPSVPLGRILLKGENITLI 83
>gi|449550635|gb|EMD41599.1| hypothetical protein CERSUDRAFT_61589 [Ceriporiopsis
subvermispora B]
Length = 87
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IF+ LQ + +I IWL++ ++RIEGRIIGFDE+MN+V+D+A EV++
Sbjct: 2 SNRQQRVMVQPINVIFKNLQQRTKIVIWLYDNIEMRIEGRIIGFDEFMNVVIDEAAEVYV 61
Query: 63 K-KNTRKPLGRILLKGDNITLM 83
K R+ LGRILLKGDNITL+
Sbjct: 62 KDAKPRRELGRILLKGDNITLI 83
>gi|397599586|gb|EJK57461.1| hypothetical protein THAOC_22489 [Thalassiosira oceanica]
Length = 86
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 61/83 (73%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M KV+++MT PIN+IF LQ K R++IWL+E + IEG+IIGFDEYMN VLD A EV
Sbjct: 1 MPPRKVKKVMTLPINVIFGHLQKKTRVKIWLYEDTRMSIEGQIIGFDEYMNFVLDSATEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
+K R +GRILLKGD ITLM
Sbjct: 61 DMKTGKRTDVGRILLKGDAITLM 83
>gi|302695849|ref|XP_003037603.1| hypothetical protein SCHCODRAFT_48486 [Schizophyllum commune
H4-8]
gi|300111300|gb|EFJ02701.1| hypothetical protein SCHCODRAFT_48486 [Schizophyllum commune
H4-8]
Length = 89
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IF+ LQ K+ + IWL++ ++RIEGRIIGFDE+MN+V+D+A EV I
Sbjct: 2 SQRQQRVMVQPINVIFKNLQQKSHVCIWLYDNIEMRIEGRIIGFDEFMNVVIDEAVEVFI 61
Query: 63 KK-NTRKPLGRILLKGDNITLM 83
K+ R+ LGRILLKGDNITL+
Sbjct: 62 KEAKPRRELGRILLKGDNITLI 83
>gi|170085379|ref|XP_001873913.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651465|gb|EDR15705.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 87
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IF+ LQ K ++ IWL++ ++RIEGRIIGFDE+MN+V+D+A EV +
Sbjct: 2 SGRQQRVMVQPINVIFKNLQQKTKVVIWLYDNVEMRIEGRIIGFDEFMNIVIDEAAEVFV 61
Query: 63 K-KNTRKPLGRILLKGDNITLM 83
K R+ LGRILLKGDNITL+
Sbjct: 62 KDAKPRRELGRILLKGDNITLI 83
>gi|224003489|ref|XP_002291416.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973192|gb|EED91523.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 86
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 61/83 (73%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M KV+++MT PIN+IF LQ K R++IWL+E + IEG+IIGFDEYMN VLD AEEV
Sbjct: 1 MPPRKVKKVMTLPINVIFGHLQKKNRVKIWLYEDTRMTIEGQIIGFDEYMNFVLDGAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
K + +GRILLKGD ITLM
Sbjct: 61 DTKSGKKTEVGRILLKGDAITLM 83
>gi|395326007|gb|EJF58421.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 87
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IF+ LQ + ++ IWL++ ++RIEG IIGFDE+MN+V+DDA EV++
Sbjct: 2 SNRQQRVMVQPINVIFKNLQQRTKVVIWLYDNIEMRIEGTIIGFDEFMNVVIDDAAEVYV 61
Query: 63 K-KNTRKPLGRILLKGDNITLM 83
K R+ LGRILLKGDNITL+
Sbjct: 62 KDAKPRRELGRILLKGDNITLI 83
>gi|146182714|ref|XP_001471048.1| Small nuclear ribonucleoprotein E, putative [Tetrahymena
thermophila]
gi|146143746|gb|EDK31351.1| Small nuclear ribonucleoprotein E, putative [Tetrahymena
thermophila SB210]
Length = 140
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 63/83 (75%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S K + +T P+ IF FLQ + R+QIWLFE ++++EG+IIGFDEYMN+VLD+ EV
Sbjct: 2 SKKQTKTITNPLTTIFGFLQKQVRVQIWLFENTEIKLEGKIIGFDEYMNMVLDETSEVDC 61
Query: 63 KKNTRKPLGRILLKGDNITLMMN 85
K N ++ +GRILLKG+NITL+ N
Sbjct: 62 KTNQKREIGRILLKGENITLIRN 84
>gi|392571823|gb|EIW64995.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 87
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IF+ LQ + ++ IWL++ D+RIEG IIGFDE+MN+V++DA EV++
Sbjct: 2 SGRQQRVMVQPINVIFKNLQQRTKVVIWLYDNIDMRIEGTIIGFDEFMNIVIEDAAEVYV 61
Query: 63 K-KNTRKPLGRILLKGDNITLM 83
K R+ LGRILLKGDNITL+
Sbjct: 62 KDAKPRRELGRILLKGDNITLI 83
>gi|343429490|emb|CBQ73063.1| probable small nuclear ribonucleoprotein E [Sporisorium reilianum
SRZ2]
Length = 85
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 60/76 (78%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
++ QPIN+IFR LQ + R+ +WL++ D RIEG+IIGFDE+MN+ L DAEEV KK+ R
Sbjct: 6 KVSVQPINIIFRHLQQQTRVSLWLYDNIDFRIEGKIIGFDEFMNVTLADAEEVWTKKDKR 65
Query: 68 KPLGRILLKGDNITLM 83
LGRILLKGDNITL+
Sbjct: 66 VELGRILLKGDNITLI 81
>gi|390604052|gb|EIN13443.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 87
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 68/82 (82%), Gaps = 1/82 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IF+ LQ + ++ +WL++ ++RIEGRIIGFDE+MN+V+D+A EV++
Sbjct: 2 SGRQQRVMVQPINVIFKNLQQRQKVVVWLYDNIEMRIEGRIIGFDEFMNVVMDEAAEVYV 61
Query: 63 KK-NTRKPLGRILLKGDNITLM 83
K+ R+ +GRILLKGDNITL+
Sbjct: 62 KEAKPRREIGRILLKGDNITLI 83
>gi|19112516|ref|NP_595724.1| Sm snRNP core protein Sme1 [Schizosaccharomyces pombe 972h-]
gi|74638881|sp|Q9USZ3.1|RUXE_SCHPO RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|6165482|emb|CAB59808.1| Sm snRNP core protein Sme1 [Schizosaccharomyces pombe]
Length = 84
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S +VQ++M PIN IF+ LQ + IWLFEQ D+R++G+I GFDE+MN+VLDDA +V
Sbjct: 2 SGRVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDA 61
Query: 63 KKNTRKPLGRILLKGDNITLM 83
K N R+ LGRILLKGDNITL+
Sbjct: 62 KNNKRE-LGRILLKGDNITLI 81
>gi|403411704|emb|CCL98404.1| predicted protein [Fibroporia radiculosa]
Length = 87
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IF+ LQ + ++ IWL++ ++RIEGRIIGFDE+MN+V+D+A EV++
Sbjct: 2 SGRQQRVMVQPINVIFKNLQQRTKVVIWLYDNIEMRIEGRIIGFDEFMNVVIDEATEVYV 61
Query: 63 K-KNTRKPLGRILLKGDNITLM 83
K ++ LGRILLKGDNITL+
Sbjct: 62 KDAKPQRELGRILLKGDNITLI 83
>gi|209882013|ref|XP_002142444.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209558050|gb|EEA08095.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 91
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 66/84 (78%), Gaps = 2/84 (2%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
+ Q+IMTQPIN IFR SK R+QIWL++ +L +EG+I GFDEYMN+VLDD EV+ KK
Sbjct: 6 RTQKIMTQPINQIFRLFTSKQRVQIWLYDHPELSLEGKIQGFDEYMNIVLDDVTEVYTKK 65
Query: 65 N--TRKPLGRILLKGDNITLMMNT 86
+ +R+ +GR++L+G+NI+L+ +
Sbjct: 66 DEVSRRDIGRLMLRGENISLISDA 89
>gi|430813791|emb|CCJ28894.1| unnamed protein product [Pneumocystis jirovecii]
Length = 92
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 61/77 (79%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
Q++M PIN IF+ LQ + IWL+EQ +++IEG+I GFDE+MNLV+D+A E+ KKN+
Sbjct: 11 QKVMIPPINFIFKLLQQHTTVCIWLYEQTEMKIEGKIRGFDEFMNLVIDEAVEIGQKKNS 70
Query: 67 RKPLGRILLKGDNITLM 83
+ LGRILLKGDNITL+
Sbjct: 71 SRSLGRILLKGDNITLI 87
>gi|281353334|gb|EFB28918.1| hypothetical protein PANDA_013986 [Ailuropoda melanoleuca]
Length = 86
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 62/79 (78%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M I LIFR LQ++ +IQ+WL Q ++RIEG I FDEY+NLVLDDA+E+H K
Sbjct: 6 KVQKVMVHTIILIFRSLQNRFQIQVWLHNQANMRIEGCIHSFDEYVNLVLDDAKEIHYKT 65
Query: 65 NTRKPLGRILLKGDNITLM 83
+RK LG+I+LKGDN TL+
Sbjct: 66 KSRKQLGQIMLKGDNTTLL 84
>gi|338724569|ref|XP_003364968.1| PREDICTED: small nuclear ribonucleoprotein E-like, partial [Equus
caballus]
Length = 71
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 58/70 (82%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
F +L ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K +RK LGRI+LKG
Sbjct: 1 FLWLFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKG 60
Query: 78 DNITLMMNTG 87
DNITL+ +
Sbjct: 61 DNITLLQSVS 70
>gi|45478130|gb|AAS66236.1| LRRGT00145 [Rattus norvegicus]
Length = 428
Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 45/61 (73%), Positives = 52/61 (85%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQS +RIQ+WL EQ D +IEG IIGFDEYMNLV DDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQSGSRIQVWLCEQVDAQIEGCIIGFDEYMNLVSDDAEEIHSKT 68
Query: 65 N 65
N
Sbjct: 69 N 69
>gi|301115033|ref|XP_002999286.1| small nuclear ribonucleoprotein E [Phytophthora infestans T30-4]
gi|262111380|gb|EEY69432.1| small nuclear ribonucleoprotein E [Phytophthora infestans T30-4]
Length = 79
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 55/68 (80%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLK 76
+F K+RIQ+WL+EQ + RIEGRI+GFDEYMNLVLDDAEE+ +K R PLGRILLK
Sbjct: 3 LFWLSTQKSRIQVWLYEQVNTRIEGRIMGFDEYMNLVLDDAEELDVKNLKRTPLGRILLK 62
Query: 77 GDNITLMM 84
GD ITLMM
Sbjct: 63 GDTITLMM 70
>gi|443894424|dbj|GAC71772.1| small nuclear ribonucleoprotein E [Pseudozyma antarctica T-34]
Length = 86
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
++ QPIN+IFR LQ + R+ +WL++ D RIEG+IIGFDE+MN+ L DAEEV +KK+ +
Sbjct: 6 KVSVQPINIIFRHLQQQTRVSLWLYDNVDFRIEGKIIGFDEFMNVTLADAEEVWLKKDHK 65
Query: 68 K-PLGRILLKGDNITLM 83
+ LGRILLKGDNITL+
Sbjct: 66 RVELGRILLKGDNITLI 82
>gi|348683781|gb|EGZ23596.1| hypothetical protein PHYSODRAFT_486753 [Phytophthora sojae]
Length = 70
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 53/61 (86%)
Query: 24 KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
K+RIQ+WL+EQ + RIEGRI+GFDEYMNLVLDDAEE+ +K R PLGRILLKGD ITLM
Sbjct: 1 KSRIQVWLYEQVNTRIEGRIMGFDEYMNLVLDDAEELDVKNLKRTPLGRILLKGDTITLM 60
Query: 84 M 84
M
Sbjct: 61 M 61
>gi|358399324|gb|EHK48667.1| hypothetical protein TRIATDRAFT_298071 [Trichoderma atroviride
IMI 206040]
Length = 96
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 5/82 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----K 63
++ PIN+IF+ LQS A + +WL+EQ +RIEG+I GFDE+MNLV+DDA EV
Sbjct: 12 VLLPPINMIFKLLQSNATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 64 KNTRKPLGRILLKGDNITLMMN 85
K +RKPLG+ILLKGDN++L+ N
Sbjct: 72 KESRKPLGQILLKGDNVSLIQN 93
>gi|400599169|gb|EJP66873.1| small nuclear ribonucleoprotein E [Beauveria bassiana ARSEF 2860]
Length = 95
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 5/82 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----K 63
++ PIN+IF+ LQS A + +WL+EQ +R+EG+I GFDE+MNLVLDDA EV
Sbjct: 11 VLLPPINMIFKLLQSNATVSVWLYEQLGIRVEGKIRGFDEFMNLVLDDAVEVRQITKTND 70
Query: 64 KNTRKPLGRILLKGDNITLMMN 85
K TR+PLG+ILLKGDN++L+ N
Sbjct: 71 KETRRPLGQILLKGDNVSLIQN 92
>gi|71015586|ref|XP_758826.1| hypothetical protein UM02679.1 [Ustilago maydis 521]
gi|46098616|gb|EAK83849.1| hypothetical protein UM02679.1 [Ustilago maydis 521]
Length = 136
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK-N 65
++ QPIN+IFR LQ + R+ +WL++ D RIEG+IIGFDE+MN+ L DAEEV KK N
Sbjct: 5 SKVSVQPINIIFRHLQQQTRVSLWLYDNVDFRIEGKIIGFDEFMNVTLADAEEVWTKKDN 64
Query: 66 TRKPLGRILLKGDNI 80
R LGRILLKGDNI
Sbjct: 65 KRVELGRILLKGDNI 79
>gi|340518388|gb|EGR48629.1| predicted protein [Trichoderma reesei QM6a]
Length = 96
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 5/82 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----K 63
++ PIN+IF+ LQ+ A + +WL+EQ +RIEG+I GFDE+MNLV+DDA EV
Sbjct: 12 VLLPPINMIFKLLQNNATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 64 KNTRKPLGRILLKGDNITLMMN 85
K TRKPLG+ILLKGDN++L+ N
Sbjct: 72 KETRKPLGQILLKGDNVSLIQN 93
>gi|150865716|ref|XP_001385048.2| hypothetical protein PICST_47366 [Scheffersomyces stipitis CBS
6054]
gi|149386972|gb|ABN67019.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 90
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 65/85 (76%), Gaps = 2/85 (2%)
Query: 1 MASTKV--QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 58
M+S K ++ M PINLIF++LQ ++ + IWL+EQ RI+G+I GFDE+MN+V+DDA
Sbjct: 1 MSSHKATGKKSMLPPINLIFKYLQQQSPVTIWLYEQTQSRIQGKIRGFDEFMNIVIDDAV 60
Query: 59 EVHIKKNTRKPLGRILLKGDNITLM 83
E+ K +++ LGRILLKGDNITL+
Sbjct: 61 EISTKDGSKEELGRILLKGDNITLI 85
>gi|358383788|gb|EHK21450.1| hypothetical protein TRIVIDRAFT_91240 [Trichoderma virens Gv29-8]
Length = 96
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 62/82 (75%), Gaps = 5/82 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----K 63
++ PIN+IF+ LQ+ A + +WL+EQ +RIEG+I GFDE+MNLV+DDA EV
Sbjct: 12 VLLPPINMIFKLLQNNATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 64 KNTRKPLGRILLKGDNITLMMN 85
K TRKPLG+ILLKGDN++L+ N
Sbjct: 72 KETRKPLGQILLKGDNVSLIQN 93
>gi|388853510|emb|CCF52909.1| probable small nuclear ribonucleoprotein E [Ustilago hordei]
Length = 86
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
++ QPIN+IFR LQ + R+ +WL++ D RIEG+IIGFDE+MN+ L DAEEV KK+ +
Sbjct: 6 KVSVQPINVIFRHLQQQTRVSLWLYDNIDFRIEGKIIGFDEFMNVTLADAEEVWTKKDNK 65
Query: 68 K-PLGRILLKGDNITLM 83
LGRILLKGDNITL+
Sbjct: 66 HVELGRILLKGDNITLI 82
>gi|432108661|gb|ELK33362.1| Small nuclear ribonucleoprotein E [Myotis davidii]
Length = 80
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 54/59 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK 63
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDE+MNLVLDDA E+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEFMNLVLDDAGEIHSK 67
>gi|300176178|emb|CBK23489.2| unnamed protein product [Blastocystis hominis]
Length = 95
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 63/85 (74%), Gaps = 9/85 (10%)
Query: 8 RIMTQPINLIFRFLQS---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 58
+ + QPI++IFRFLQ K +QIWL++Q +RIEG I GFDEYMN+VLD+A
Sbjct: 7 KTLLQPIDIIFRFLQGISFFKMATHKTGVQIWLYDQPHVRIEGVINGFDEYMNIVLDNAS 66
Query: 59 EVHIKKNTRKPLGRILLKGDNITLM 83
EV+IK TRK LG+ILLKGDN+TL+
Sbjct: 67 EVNIKMKTRKNLGKILLKGDNVTLI 91
>gi|213407688|ref|XP_002174615.1| Sm snRNP core protein Sme1 [Schizosaccharomyces japonicus yFS275]
gi|212002662|gb|EEB08322.1| Sm snRNP core protein Sme1 [Schizosaccharomyces japonicus yFS275]
Length = 84
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S +VQ++M PIN IF+ LQ +QIWL+EQ+ R+EG I GFDE+MN+VLDDA +V
Sbjct: 2 SGRVQKVMLPPINFIFKLLQQHTPVQIWLYEQQTHRLEGLIRGFDEFMNIVLDDAVQVD- 60
Query: 63 KKNTRKPLGRILLKGDNITLM 83
KN ++ LGRILLKGDNITL+
Sbjct: 61 DKNRKRALGRILLKGDNITLI 81
>gi|294659407|ref|XP_461772.2| DEHA2G05192p [Debaryomyces hansenii CBS767]
gi|199433937|emb|CAG90229.2| DEHA2G05192p [Debaryomyces hansenii CBS767]
Length = 90
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 61/77 (79%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
++ M PINLIF++LQ ++ + IWL+EQ RI+G+I GFDE+MN+V+DDA EV+ +
Sbjct: 9 KKTMIPPINLIFKYLQQQSPVTIWLYEQTHSRIQGKIRGFDEFMNVVIDDAMEVNTNDGS 68
Query: 67 RKPLGRILLKGDNITLM 83
++ LGRILLKGDNITL+
Sbjct: 69 KEELGRILLKGDNITLI 85
>gi|448118085|ref|XP_004203416.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|448120526|ref|XP_004203999.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|359384284|emb|CCE78988.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|359384867|emb|CCE78402.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 61/77 (79%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
++ M PINLIF++LQ ++ + IWLFEQ RI+G+I GFDE+MN+V+DDA+E+ + +
Sbjct: 9 KKPMLPPINLIFKYLQQQSLVTIWLFEQTQSRIQGKIRGFDEFMNIVIDDAKEISTEDGS 68
Query: 67 RKPLGRILLKGDNITLM 83
+ LGRILLKGDNITL+
Sbjct: 69 SEALGRILLKGDNITLI 85
>gi|346474106|gb|AEO36897.1| hypothetical protein [Amblyomma maculatum]
Length = 78
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 61/77 (79%), Gaps = 2/77 (2%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
MT P +L + + +ARIQ+WL+E LRIEG IIGFDEYMNLVLDDAEE++ K RK
Sbjct: 1 MTMPGHL--QRPRQRARIQVWLYENVALRIEGHIIGFDEYMNLVLDDAEEIYTKSKQRKQ 58
Query: 70 LGRILLKGDNITLMMNT 86
+GRILLKG+NI+L+M+T
Sbjct: 59 VGRILLKGENISLIMST 75
>gi|146418481|ref|XP_001485206.1| hypothetical protein PGUG_02935 [Meyerozyma guilliermondii ATCC
6260]
Length = 84
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
M PIN+IF+FLQ + + IWL+EQ L+I+GRI GFDE+MN+V+DDA V I K++ P
Sbjct: 8 MLPPINVIFKFLQQQVPVTIWLYEQTQLKIQGRIRGFDEFMNIVIDDA--VEILKDSEVP 65
Query: 70 LGRILLKGDNITLM 83
LGRILLKGDNITL+
Sbjct: 66 LGRILLKGDNITLI 79
>gi|297295616|ref|XP_002804656.1| PREDICTED: small nuclear ribonucleoprotein E-like [Macaca mulatta]
Length = 105
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 60/72 (83%)
Query: 14 INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRI 73
+NLIFR+LQ+++RIQ+WL+EQ + RIEG II FDEY+ LVLD+AEE++ K +R +GRI
Sbjct: 31 VNLIFRYLQNRSRIQVWLYEQVNTRIEGCIISFDEYVKLVLDNAEEIYSKTKSRMQVGRI 90
Query: 74 LLKGDNITLMMN 85
+LKG NITL+ +
Sbjct: 91 MLKGHNITLLQS 102
>gi|46111729|ref|XP_382922.1| hypothetical protein FG02746.1 [Gibberella zeae PH-1]
gi|408389795|gb|EKJ69221.1| hypothetical protein FPSE_10604 [Fusarium pseudograminearum
CS3096]
Length = 96
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 61/85 (71%), Gaps = 5/85 (5%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----K 63
++ PIN IF+ LQS A + +WL+EQ +RIEG+I GFDE+MNLV+DDA EV
Sbjct: 12 VLVPPINFIFKLLQSHATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 64 KNTRKPLGRILLKGDNITLMMNTGK 88
K +R+PLG+ILLKGDN++L+ +
Sbjct: 72 KESRRPLGQILLKGDNVSLIQSAAS 96
>gi|448534499|ref|XP_003870814.1| hypothetical protein CORT_0F04610 [Candida orthopsilosis Co
90-125]
gi|380355169|emb|CCG24686.1| hypothetical protein CORT_0F04610 [Candida orthopsilosis]
Length = 86
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 63/83 (75%), Gaps = 2/83 (2%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+S V + PINLIF+FLQ ++ + IWL+E+ RI+G+I GFDEYMNLV+D+AEE+
Sbjct: 1 MSSKSVSKTNLPPINLIFKFLQQQSLVTIWLYEKSHSRIQGKIQGFDEYMNLVIDEAEEI 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
K T PLG++LLKG+NITL+
Sbjct: 61 VNGKKT--PLGKLLLKGENITLI 81
>gi|320589574|gb|EFX02030.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 96
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 60/80 (75%), Gaps = 5/80 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIKKN-- 65
++ PIN+IF+ LQS A + +WL+EQ RIEG+I GFDE++NLVLDDA V I K
Sbjct: 12 VLLPPINMIFKLLQSHATVSVWLYEQLSFRIEGKIRGFDEFLNLVLDDAVVVGQITKTQE 71
Query: 66 --TRKPLGRILLKGDNITLM 83
TRKPLGRILLKGDNI+L+
Sbjct: 72 EETRKPLGRILLKGDNISLI 91
>gi|149235887|ref|XP_001523821.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452197|gb|EDK46453.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 86
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+S +++ PINLIF+FLQ ++ + IWL+EQ D RI+G+I+GFDE+MNLV+D+AEE+
Sbjct: 1 MSSQSLKKSNLPPINLIFKFLQQQSLVTIWLYEQIDYRIQGKILGFDEFMNLVVDEAEEL 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
K T+ LGR+LLKGD ITL+
Sbjct: 61 ADGKRTK--LGRLLLKGDTITLI 81
>gi|296411223|ref|XP_002835333.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629111|emb|CAZ79490.1| unnamed protein product [Tuber melanosporum]
Length = 93
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 63/81 (77%), Gaps = 4/81 (4%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK----K 64
++ PIN IF+ LQS A +QIWL+EQ +RIEG+I GFDE+MNLV+DDA EV +K +
Sbjct: 12 VLLPPINFIFKLLQSHATVQIWLYEQLAIRIEGKIRGFDEFMNLVIDDAVEVKLKTKDEE 71
Query: 65 NTRKPLGRILLKGDNITLMMN 85
+R+ LG+ILLKGDN++L+ +
Sbjct: 72 ESRRELGQILLKGDNVSLIQS 92
>gi|344299952|gb|EGW30292.1| hypothetical protein SPAPADRAFT_63138 [Spathaspora passalidarum
NRRL Y-27907]
Length = 87
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 61/81 (75%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S+K ++ PINLIF+FLQ ++++ IWL+EQ RI+G+I GFDE+MN+V+DDA E+
Sbjct: 2 SSKQKKATLPPINLIFKFLQHQSQVTIWLYEQTQSRIQGKIRGFDEFMNIVIDDAVEIST 61
Query: 63 KKNTRKPLGRILLKGDNITLM 83
+ LGRILLKGDNITL+
Sbjct: 62 VTGRKDELGRILLKGDNITLI 82
>gi|402079438|gb|EJT74703.1| sm snRNP core protein Sme1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 94
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 62/80 (77%), Gaps = 5/80 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH--IKKNT 66
I+ PIN IF+ LQS A +QIWL+EQ +RIEG+I GFDE+MNLVLDDA E+ K+N
Sbjct: 12 ILLPPINFIFKLLQSHAPVQIWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEIKQVTKENP 71
Query: 67 ---RKPLGRILLKGDNITLM 83
R+PLG+ILLKGDN++L+
Sbjct: 72 EEKRRPLGQILLKGDNVSLI 91
>gi|331212255|ref|XP_003307397.1| small nuclear ribonucleoprotein E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309297800|gb|EFP74391.1| small nuclear ribonucleoprotein E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 98
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 64/93 (68%), Gaps = 12/93 (12%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IF+ LQ+ + IWL++ + R+EG+IIGFDE+MN+VLD+A EV +
Sbjct: 2 SGRQQRVMVQPINVIFKHLQAGQLVHIWLYDNTEFRLEGKIIGFDEFMNVVLDNASEVWV 61
Query: 63 K------------KNTRKPLGRILLKGDNITLM 83
K K R LGR+LLKG+NITL+
Sbjct: 62 KSKKGTPHREAVEKGARVSLGRLLLKGENITLI 94
>gi|58271500|ref|XP_572906.1| small nuclear ribonucleoprotein E [Cryptococcus neoformans var.
neoformans JEC21]
gi|134115058|ref|XP_773827.1| hypothetical protein CNBH2790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256455|gb|EAL19180.1| hypothetical protein CNBH2790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229165|gb|AAW45599.1| small nuclear ribonucleoprotein E, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 92
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---- 62
+++M QPIN+IF LQ R+ IWL++ D RIE IIGFDE+MN+VLDDAEEV+
Sbjct: 4 RKVMVQPINIIFSHLQKHNRVAIWLYDNNDFRIEAYIIGFDEFMNVVLDDAEEVYDCGAK 63
Query: 63 ---KKNTRKPLGRILLKGDNITLM 83
+ R+ LGRILLKGDNITL+
Sbjct: 64 PGKEVPPRRELGRILLKGDNITLI 87
>gi|389633501|ref|XP_003714403.1| sm snRNP core protein Sme1 [Magnaporthe oryzae 70-15]
gi|351646736|gb|EHA54596.1| sm snRNP core protein Sme1 [Magnaporthe oryzae 70-15]
Length = 95
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 63/83 (75%), Gaps = 5/83 (6%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH--IKKN 65
+I+ PIN IF+ LQS A + IWL+EQ +RIEG+I GFDE+MNLV+DDA EV K N
Sbjct: 11 KILLPPINCIFKLLQSHATVSIWLYEQLGIRIEGKIRGFDEFMNLVIDDAIEVKQITKDN 70
Query: 66 T---RKPLGRILLKGDNITLMMN 85
T R+PLG+ILLKGDN++L+ +
Sbjct: 71 TEEKRRPLGQILLKGDNVSLIQS 93
>gi|302891819|ref|XP_003044791.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256725716|gb|EEU39078.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 96
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 61/82 (74%), Gaps = 5/82 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----K 63
++ PIN IF+ LQS A + +WL+EQ +RIEG+I GFDE+MNLV+DDA EV
Sbjct: 12 VLLLPINFIFKLLQSHATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 64 KNTRKPLGRILLKGDNITLMMN 85
K TR+PLG+ILLKGDN++L+ +
Sbjct: 72 KETRRPLGQILLKGDNVSLIQS 93
>gi|405122118|gb|AFR96885.1| small nuclear ribonucleoprotein E [Cryptococcus neoformans var.
grubii H99]
Length = 92
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---- 62
+++M QPIN+IF LQ R+ +WL++ D RIE IIGFDE+MN+VLDDAEEV+
Sbjct: 4 RKVMVQPINIIFSHLQKHNRVAVWLYDNNDFRIEAYIIGFDEFMNVVLDDAEEVYDCGAK 63
Query: 63 ---KKNTRKPLGRILLKGDNITLM 83
+ R+ LGRILLKGDNITL+
Sbjct: 64 PGKEVPPRRELGRILLKGDNITLI 87
>gi|440636915|gb|ELR06834.1| hypothetical protein GMDG_08125 [Geomyces destructans 20631-21]
Length = 98
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 62/80 (77%), Gaps = 5/80 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIKKN-- 65
++ PIN+IF+ LQ+ + + IWL+EQ +RIEG+I GFDE+MNLV+DDA EV I K
Sbjct: 14 VLLPPINMIFKLLQTNSTVSIWLYEQIAIRIEGKIRGFDEFMNLVIDDAIEVGQITKTNE 73
Query: 66 --TRKPLGRILLKGDNITLM 83
TR+PLGRILLKGDN++L+
Sbjct: 74 TETRRPLGRILLKGDNVSLI 93
>gi|346324729|gb|EGX94326.1| small nuclear ribonucleoprotein E [Cordyceps militaris CM01]
Length = 141
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 63/85 (74%), Gaps = 5/85 (5%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----K 63
++ PIN+IF+ LQ+ + + +WL+EQ +RIEG+I GFDE+MNLVLDDA EV
Sbjct: 57 VLLPPINMIFKLLQTNSTVSVWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEVRQITKTND 116
Query: 64 KNTRKPLGRILLKGDNITLMMNTGK 88
K +R+PLG+ILLKGDN++L+ N +
Sbjct: 117 KESRRPLGQILLKGDNVSLIQNLSE 141
>gi|322696736|gb|EFY88524.1| LSM domain-containing protein [Metarhizium acridum CQMa 102]
Length = 96
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 60/80 (75%), Gaps = 5/80 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----K 63
++ PIN+IF+ LQS A + +WL+EQ +RIEG+I GFDE+MNLV+DDA EV
Sbjct: 12 VLLPPINMIFKLLQSNATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVSQVTKTND 71
Query: 64 KNTRKPLGRILLKGDNITLM 83
K TRK LG+ILLKGDN++L+
Sbjct: 72 KETRKQLGQILLKGDNVSLI 91
>gi|344289176|ref|XP_003416321.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
E-like [Loxodonta africana]
Length = 124
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNL-VLDDAEEVH 61
S K+Q+++ QP LI R+LQS + IQ+WL EQ ++R+E +I FDE MNL DDAEE+H
Sbjct: 18 SQKMQKVIMQPTTLICRYLQSGSWIQVWLQEQVNIRVEDCVIXFDECMNLGAEDDAEEIH 77
Query: 62 IKKNTRKPLGRILLKGDNITLMMNTG 87
K +RK LG I++KGDNITL+ +
Sbjct: 78 SKTTSRKELGWIMIKGDNITLLQSVS 103
>gi|126647281|ref|XP_001388059.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|126117147|gb|EAZ51247.1| small nuclear ribonucleoprotein, putative [Cryptosporidium parvum
Iowa II]
Length = 92
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
K Q++M QPIN IF SK R+QIWL++ K+L +EG I GFDEYMN+VLD A EV+ KK
Sbjct: 8 KTQKMMLQPINQIFHLFTSKQRVQIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKK 67
Query: 65 NTRK--PLGRILLKGDNITLMMNT 86
R+ +G++LL+G+NI+L+
Sbjct: 68 EVRRETSVGQLLLRGENISLICEC 91
>gi|190346690|gb|EDK38837.2| hypothetical protein PGUG_02935 [Meyerozyma guilliermondii ATCC
6260]
Length = 84
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
M PIN+IF+FLQ + + IWL+EQ +I+GRI GFDE+MN+V+DDA V I K++ P
Sbjct: 8 MLPPINVIFKFLQQQVPVTIWLYEQTQSKIQGRIRGFDEFMNIVIDDA--VEILKDSEVP 65
Query: 70 LGRILLKGDNITLM 83
LGRILLKGDNITL+
Sbjct: 66 LGRILLKGDNITLI 79
>gi|50549605|ref|XP_502273.1| YALI0D01155p [Yarrowia lipolytica]
gi|49648141|emb|CAG80459.1| YALI0D01155p [Yarrowia lipolytica CLIB122]
Length = 85
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 61/79 (77%), Gaps = 2/79 (2%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
QR+M PI ++F+FLQ A +Q+WLFEQ D RI+G ++GFDE+MN+VL+DA + I +
Sbjct: 7 QRVMLVPIKVLFKFLQLHATVQVWLFEQSDTRIQGTLVGFDEFMNVVLEDA--IQICGDK 64
Query: 67 RKPLGRILLKGDNITLMMN 85
+ +G+I+LKGDNITL+ N
Sbjct: 65 ERKIGKIMLKGDNITLISN 83
>gi|429850739|gb|ELA25982.1| small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 96
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 60/81 (74%), Gaps = 5/81 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH--IKKN---TR 67
PIN IFR LQ +QIWL+EQ +RIEG+I GFDE+MNLV+DDA EV K N +R
Sbjct: 16 PINFIFRLLQQHTTVQIWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQVTKTNPEESR 75
Query: 68 KPLGRILLKGDNITLMMNTGK 88
+PLG+ILLKGDN++L+ + +
Sbjct: 76 RPLGQILLKGDNVSLIQSVSE 96
>gi|321262372|ref|XP_003195905.1| small nuclear ribonucleoprotein E [Cryptococcus gattii WM276]
gi|317462379|gb|ADV24118.1| Small nuclear ribonucleoprotein E, putative [Cryptococcus gattii
WM276]
Length = 92
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 60/84 (71%), Gaps = 7/84 (8%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---- 62
+++M QPIN+IF LQ R+ IWL++ + RIE IIGFDE+MN+VLDDAEEV+
Sbjct: 4 RKVMVQPINIIFSHLQKHNRVAIWLYDNNEFRIEAYIIGFDEFMNVVLDDAEEVYDCGAK 63
Query: 63 ---KKNTRKPLGRILLKGDNITLM 83
+ R+ LGRILLKGDNITL+
Sbjct: 64 PGKEVPPRRELGRILLKGDNITLI 87
>gi|407924103|gb|EKG17161.1| hypothetical protein MPH_05615 [Macrophomina phaseolina MS6]
Length = 95
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 62/83 (74%), Gaps = 4/83 (4%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI----K 63
+++ PIN IF+ LQ++A + IWLFEQ LRIEG+I GFDE+MNLV+DDA EV +
Sbjct: 11 KVLLPPINFIFKLLQTRATVSIWLFEQVGLRIEGKIRGFDEFMNLVIDDAIEVKLATKDS 70
Query: 64 KNTRKPLGRILLKGDNITLMMNT 86
+ R+ LG+ILLKGDN++L+ +
Sbjct: 71 EEKRRALGQILLKGDNVSLIQSV 93
>gi|281204021|gb|EFA78217.1| hypothetical protein PPL_08867 [Polysphondylium pallidum PN500]
Length = 80
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 62/86 (72%), Gaps = 10/86 (11%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+ + + +M +P++++ QI LFEQ DLRIEG IIG DEYMNLVLD+A E+
Sbjct: 1 MSEYRQKSVMLKPVSVV----------QIMLFEQTDLRIEGVIIGLDEYMNLVLDNAFEI 50
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNT 86
+KK TRKPLG+ILLKGDNITL+ +
Sbjct: 51 SMKKKTRKPLGQILLKGDNITLVYDV 76
>gi|344231123|gb|EGV63005.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 90
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 56/76 (73%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
R M PI+ IF LQ + + +WL+EQ RIEG+I GFDE+MN+VLDDA EV K ++
Sbjct: 10 RAMHTPIHTIFTCLQQRLTVSVWLYEQTQSRIEGKIRGFDEFMNIVLDDAIEVSTKDGSK 69
Query: 68 KPLGRILLKGDNITLM 83
+ LGRI+LKGDNITL+
Sbjct: 70 EDLGRIMLKGDNITLI 85
>gi|398365473|ref|NP_014802.3| Sme1p [Saccharomyces cerevisiae S288c]
gi|2500647|sp|Q12330.1|RUXE_YEAST RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|1293719|gb|AAC49645.1| similar to the mammalian snRNP-E involved in splicing, CAI: 0.12;
snRNPE homolog [Saccharomyces cerevisiae]
gi|1420395|emb|CAA99365.1| SME1 [Saccharomyces cerevisiae]
gi|1694906|emb|CAA63198.1| core snRNP protein E [Saccharomyces cerevisiae]
gi|45269948|gb|AAS56355.1| YOR159C [Saccharomyces cerevisiae]
gi|151945777|gb|EDN64018.1| Sm E [Saccharomyces cerevisiae YJM789]
gi|190407477|gb|EDV10744.1| small nuclear ribonucleoprotein E [Saccharomyces cerevisiae
RM11-1a]
gi|256272778|gb|EEU07749.1| Sme1p [Saccharomyces cerevisiae JAY291]
gi|259149642|emb|CAY86446.1| Sme1p [Saccharomyces cerevisiae EC1118]
gi|285815039|tpg|DAA10932.1| TPA: Sme1p [Saccharomyces cerevisiae S288c]
gi|349581316|dbj|GAA26474.1| K7_Sme1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296487|gb|EIW07589.1| Sme1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 94
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 8/92 (8%)
Query: 3 STKVQ-RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
S KV+ + M PIN IF FLQ + + IWLFEQ +RI+G+I+GFDE+MN+V+D+A E+
Sbjct: 2 SNKVKTKAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIP 61
Query: 62 IKKNTRK-------PLGRILLKGDNITLMMNT 86
+ K PLG+ILLKGDNITL+ +
Sbjct: 62 VNSADGKEDVEKGTPLGKILLKGDNITLITSA 93
>gi|345568747|gb|EGX51639.1| hypothetical protein AOL_s00054g38 [Arthrobotrys oligospora ATCC
24927]
Length = 98
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI----KK 64
++ PIN IF+ LQ+ A +QIWL+EQ RIEG+I GFDE+MNLV+D+A E+ + +
Sbjct: 14 VLLPPINFIFKLLQTHATVQIWLYEQLQTRIEGKIRGFDEFMNLVIDEAVEIKLPSKTED 73
Query: 65 NTRKPLGRILLKGDNITLM 83
TR+ LGRILLKGDN+T +
Sbjct: 74 ETRRELGRILLKGDNVTCI 92
>gi|340960769|gb|EGS21950.1| small nuclear ribonucleoprotein E-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 98
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%), Gaps = 5/82 (6%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
+R++ PIN +FR LQ + +QIWL+EQ +RI G I GFDE+MNLV+DDA E+ + T
Sbjct: 10 RRVLLPPINFLFRLLQQRTPVQIWLYEQLAIRITGVIRGFDEFMNLVIDDAVEIKLSPKT 69
Query: 67 -----RKPLGRILLKGDNITLM 83
++PLG+ILLKGDNI+L+
Sbjct: 70 NEPESKRPLGQILLKGDNISLI 91
>gi|293334659|ref|NP_001170587.1| uncharacterized protein LOC100384620 [Zea mays]
gi|238006188|gb|ACR34129.1| unknown [Zea mays]
Length = 143
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/48 (91%), Positives = 45/48 (93%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDE 48
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII +
Sbjct: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIVYSS 48
>gi|67478492|ref|XP_654638.1| small nuclear ribonucleoprotein [Entamoeba histolytica HM-1:IMSS]
gi|56471705|gb|EAL49252.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407040392|gb|EKE40106.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449708080|gb|EMD47607.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
KU27]
Length = 89
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 58/83 (69%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M TK+ + M P+ I + K R+ IWLFE LRIEG + GFD+Y+NLVL D EEV
Sbjct: 1 MNRTKMTKAMILPVKFIVNLAKHKQRVSIWLFENTALRIEGTLSGFDQYINLVLTDTEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
++K NTR+ +G ILLKG+NI+++
Sbjct: 61 YLKTNTRRKIGTILLKGENISVI 83
>gi|241956256|ref|XP_002420848.1| small nuclear ribonucleoprotein E (snRNP-E), putative [Candida
dubliniensis CD36]
gi|223644191|emb|CAX41000.1| small nuclear ribonucleoprotein E (snRNP-E), putative [Candida
dubliniensis CD36]
Length = 86
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+S + ++ PINLIF+FLQ ++ + IWL+EQ RI+G+I GFDE+MN+V+DDA V
Sbjct: 1 MSSKQTKQTNLPPINLIFKFLQQQSVVTIWLYEQTQSRIQGKIRGFDEFMNIVIDDA--V 58
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
+ + LGRILLKGDNITL+
Sbjct: 59 ELSNGKKSELGRILLKGDNITLI 81
>gi|302422556|ref|XP_003009108.1| small nuclear ribonucleoprotein E [Verticillium albo-atrum
VaMs.102]
gi|261352254|gb|EEY14682.1| small nuclear ribonucleoprotein E [Verticillium albo-atrum
VaMs.102]
gi|346970265|gb|EGY13717.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 94
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 61/80 (76%), Gaps = 5/80 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----K 63
++ PIN IF+ LQ +A +Q+WL+EQ +RIEG+I GFDE+MNLV+D+A EV K
Sbjct: 12 VLLPPINFIFKLLQQQATVQVWLYEQLSIRIEGKIRGFDEFMNLVIDNAVEVKQITKTNK 71
Query: 64 KNTRKPLGRILLKGDNITLM 83
+ TR+ LG+ILLKGDN++L+
Sbjct: 72 EETRRSLGQILLKGDNVSLI 91
>gi|255727532|ref|XP_002548692.1| small nuclear ribonucleoprotein E [Candida tropicalis MYA-3404]
gi|240134616|gb|EER34171.1| small nuclear ribonucleoprotein E [Candida tropicalis MYA-3404]
Length = 86
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 62/83 (74%), Gaps = 2/83 (2%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+S + ++ PINLIF+FLQ ++ + IWL+EQ RI+G+I GFDE+MN+V+DDA V
Sbjct: 1 MSSKQGKQSNLPPINLIFKFLQQQSLVNIWLYEQTQSRIQGKIRGFDEFMNIVIDDA--V 58
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
I ++ LGRILLKGDNITL+
Sbjct: 59 EICNGNKEELGRILLKGDNITLI 81
>gi|342874544|gb|EGU76546.1| hypothetical protein FOXB_12920 [Fusarium oxysporum Fo5176]
gi|388497428|gb|AFK36780.1| unknown [Lotus japonicus]
Length = 96
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 5/85 (5%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----K 63
+M PI IF L+ A + IWL+EQ +RIEG+I GFDE+MNLV+D+A EV +
Sbjct: 12 LMLPPIKYIFELLREHATVSIWLYEQLSIRIEGKIRGFDEFMNLVIDEAVEVKQVTKTNE 71
Query: 64 KNTRKPLGRILLKGDNITLMMNTGK 88
K TR+PLG+I+LKGDN++L+ N K
Sbjct: 72 KETRRPLGQIMLKGDNVSLIQNVSK 96
>gi|317139460|ref|XP_003189167.1| small nuclear ribonucleoprotein E [Aspergillus oryzae RIB40]
Length = 95
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 59/80 (73%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT- 66
+ + PI+ IF+ LQ ++ + IWL+EQ RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 12 KTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRLATKTG 71
Query: 67 ---RKPLGRILLKGDNITLM 83
R+PLG+ILLKGDN++L+
Sbjct: 72 EEKRRPLGQILLKGDNVSLI 91
>gi|238482745|ref|XP_002372611.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus flavus
NRRL3357]
gi|220700661|gb|EED56999.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus flavus
NRRL3357]
Length = 95
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 59/80 (73%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT- 66
+ + PI+ IF+ LQ ++ + IWL+EQ RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 12 KTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRLATKTE 71
Query: 67 ---RKPLGRILLKGDNITLM 83
R+PLG+ILLKGDN++L+
Sbjct: 72 EEKRRPLGQILLKGDNVSLI 91
>gi|115399850|ref|XP_001215514.1| small nuclear ribonucleoprotein E [Aspergillus terreus NIH2624]
gi|114191180|gb|EAU32880.1| small nuclear ribonucleoprotein E [Aspergillus terreus NIH2624]
Length = 94
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 60/82 (73%), Gaps = 4/82 (4%)
Query: 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN 65
++ + PI+ IF+ LQ ++ + IWL+EQ RIEG+I GFDE+MNLV+DDA EV +
Sbjct: 9 ARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRMATK 68
Query: 66 T----RKPLGRILLKGDNITLM 83
T R+PLG+ILLKGDN++L+
Sbjct: 69 TDEEKRRPLGQILLKGDNVSLI 90
>gi|255943851|ref|XP_002562693.1| Pc20g01340 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587428|emb|CAP85463.1| Pc20g01340 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 100
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%), Gaps = 4/81 (4%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
++ + PI+ IF LQ ++ + IWL+EQ RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 17 RKTLLAPIHFIFSLLQKRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLATKT 76
Query: 67 ----RKPLGRILLKGDNITLM 83
R+PLG+ILLKGDN++L+
Sbjct: 77 EEEKRRPLGQILLKGDNVSLI 97
>gi|392574635|gb|EIW67771.1| hypothetical protein TREMEDRAFT_69713 [Tremella mesenterica DSM
1558]
Length = 93
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%), Gaps = 7/84 (8%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK-- 64
+++ QPIN+IF LQ RI IWL++ + RIE I+GFDE+MNLVLD+AEEV+
Sbjct: 4 RKVAVQPINVIFSHLQKHTRITIWLYDSNEFRIEAFIVGFDEFMNLVLDEAEEVYDCAAK 63
Query: 65 -----NTRKPLGRILLKGDNITLM 83
R+ LGRILLKGDNITL+
Sbjct: 64 PGKPVKPRRELGRILLKGDNITLI 87
>gi|380479557|emb|CCF42948.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 96
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 58/80 (72%), Gaps = 5/80 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIKKNT- 66
++ PIN IF+ LQ +QIWL+EQ +RIEG+I GFDE+MNLV+DDA EV I K
Sbjct: 12 VLLPPINFIFKLLQQHTTVQIWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTNL 71
Query: 67 ---RKPLGRILLKGDNITLM 83
R PLG+ILLKGDN++L+
Sbjct: 72 EEKRTPLGQILLKGDNVSLI 91
>gi|380800507|gb|AFE72129.1| small nuclear ribonucleoprotein E, partial [Macaca mulatta]
Length = 59
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 48/54 (88%)
Query: 30 WLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K +RK LGRI+LKGDNITL+
Sbjct: 1 WLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 54
>gi|406866709|gb|EKD19748.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 95
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 62/83 (74%), Gaps = 4/83 (4%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----HI 62
++++ PIN IF+ LQ ++ +QIWL+EQ +RIEG+I GFDE+MNLV+DDA EV
Sbjct: 10 RKVLLPPINFIFKLLQQRSTVQIWLYEQLAIRIEGKIRGFDEFMNLVIDDAVEVKQATKT 69
Query: 63 KKNTRKPLGRILLKGDNITLMMN 85
+R+ LG+ILLKGDN++L+ +
Sbjct: 70 SAESRRDLGQILLKGDNVSLIQS 92
>gi|259480327|tpe|CBF71356.1| TPA: small nuclear ribonucleoprotein SmE, putative
(AFU_orthologue; AFUA_7G05980) [Aspergillus nidulans
FGSC A4]
Length = 94
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 60/82 (73%), Gaps = 4/82 (4%)
Query: 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN 65
++ + PI+ IF+ LQ ++ + IWL+EQ RIEG+I GFDE+MNLV+DDA EV +
Sbjct: 9 ARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLATK 68
Query: 66 T----RKPLGRILLKGDNITLM 83
+ R+PLG+ILLKGDN++L+
Sbjct: 69 SEEEKRRPLGQILLKGDNVSLI 90
>gi|119483034|ref|XP_001261545.1| LSM domain protein [Neosartorya fischeri NRRL 181]
gi|119409700|gb|EAW19648.1| LSM domain protein [Neosartorya fischeri NRRL 181]
Length = 95
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT- 66
+ + PI+ IF+ LQ + + IWL+EQ RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 12 KTLLAPIHFIFKLLQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRMATKTD 71
Query: 67 ---RKPLGRILLKGDNITLM 83
R+PLG+ILLKGDN++L+
Sbjct: 72 EEKRRPLGQILLKGDNVSLI 91
>gi|347838352|emb|CCD52924.1| similar to small nuclear ribonucleoprotein e [Botryotinia
fuckeliana]
Length = 94
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 61/84 (72%), Gaps = 4/84 (4%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---- 62
++++ PIN IF+ LQ + IWL+EQ +RIEG+I GFDE+MNLVLDDA EV
Sbjct: 9 RKVLLPPINFIFKLLQQHTPVSIWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEVRQATKD 68
Query: 63 KKNTRKPLGRILLKGDNITLMMNT 86
K+ +R+ LG+ILLKGDN++L+ +
Sbjct: 69 KEESRRALGQILLKGDNVSLIQSA 92
>gi|70986850|ref|XP_748912.1| small nuclear ribonucleoprotein SmE [Aspergillus fumigatus Af293]
gi|66846542|gb|EAL86874.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
fumigatus Af293]
gi|159123319|gb|EDP48439.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
fumigatus A1163]
Length = 95
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT- 66
+ + PI+ IF+ LQ + + IWL+EQ RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 12 KTLLAPIHFIFKLLQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVKMATKTD 71
Query: 67 ---RKPLGRILLKGDNITLM 83
R+PLG+ILLKGDN++L+
Sbjct: 72 EEKRRPLGQILLKGDNVSLI 91
>gi|121711637|ref|XP_001273434.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
clavatus NRRL 1]
gi|119401585|gb|EAW12008.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
clavatus NRRL 1]
Length = 95
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT- 66
+ + PI+ IF+ LQ + + IWL+EQ RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 12 KTLLAPIHFIFKLLQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRMATKTD 71
Query: 67 ---RKPLGRILLKGDNITLM 83
R+PLG+ILLKGDN++L+
Sbjct: 72 EEKRRPLGQILLKGDNVSLI 91
>gi|156045543|ref|XP_001589327.1| hypothetical protein SS1G_09962 [Sclerotinia sclerotiorum 1980]
gi|154694355|gb|EDN94093.1| hypothetical protein SS1G_09962 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 94
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 4/84 (4%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---- 62
++++ PIN IF+ LQ + IWL+EQ +RIEG+I GFDE+MNLVLDDA EV
Sbjct: 9 RKVLLPPINFIFKLLQQHTPVSIWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEVKQATKD 68
Query: 63 KKNTRKPLGRILLKGDNITLMMNT 86
K +R+ LG+ILLKGDN++L+ +
Sbjct: 69 KAESRRALGQILLKGDNVSLIQSA 92
>gi|330802344|ref|XP_003289178.1| hypothetical protein DICPUDRAFT_35231 [Dictyostelium purpureum]
gi|325080754|gb|EGC34296.1| hypothetical protein DICPUDRAFT_35231 [Dictyostelium purpureum]
Length = 77
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 53/72 (73%)
Query: 16 LIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILL 75
LIF+FL K +QI L+E D RI+G IIG DEYMNLVLD+A E +KK T+KPLG+ILL
Sbjct: 1 LIFKFLTQKTEVQIMLYENVDTRIQGVIIGLDEYMNLVLDNAFEFSLKKKTKKPLGQILL 60
Query: 76 KGDNITLMMNTG 87
KGDNI ++
Sbjct: 61 KGDNILMVFEAA 72
>gi|396458899|ref|XP_003834062.1| similar to small nuclear ribonucleoprotein E [Leptosphaeria
maculans JN3]
gi|312210611|emb|CBX90697.1| similar to small nuclear ribonucleoprotein E [Leptosphaeria
maculans JN3]
Length = 94
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 60/80 (75%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK--- 64
+++ PIN IF+ LQS+A I +WL+E LRIEG++ GFDE+MNLV+DDA EV + K
Sbjct: 11 KVLLPPINFIFKLLQSRATISVWLYENLGLRIEGKLRGFDEFMNLVIDDAVEVTLAKKDA 70
Query: 65 -NTRKPLGRILLKGDNITLM 83
R+ +G+ILLKGDNI+L+
Sbjct: 71 PEERRKVGQILLKGDNISLI 90
>gi|145237192|ref|XP_001391243.1| small nuclear ribonucleoprotein E [Aspergillus niger CBS 513.88]
gi|134075709|emb|CAK96601.1| unnamed protein product [Aspergillus niger]
gi|350635406|gb|EHA23767.1| hypothetical protein ASPNIDRAFT_40173 [Aspergillus niger ATCC
1015]
gi|358369432|dbj|GAA86046.1| small nuclear ribonucleoprotein SmE [Aspergillus kawachii IFO
4308]
Length = 95
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 59/80 (73%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT- 66
+ + PI+ IF+ LQ ++ + IWL+EQ RIEG+I GFDE+MNLV+DDA EV + +
Sbjct: 12 KTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRMATKSE 71
Query: 67 ---RKPLGRILLKGDNITLM 83
R+PLG+ILLKGDN++L+
Sbjct: 72 EEKRRPLGQILLKGDNVSLI 91
>gi|296817973|ref|XP_002849323.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238839776|gb|EEQ29438.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 95
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 59/80 (73%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT- 66
+ + PI+ IF+ LQ +A + IWL+EQ +RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 11 KTLLAPIHFIFKLLQQRATVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDAVEVTLATKTE 70
Query: 67 ---RKPLGRILLKGDNITLM 83
R+ LG+ILLKGDN++L+
Sbjct: 71 AESRRQLGQILLKGDNVSLI 90
>gi|169620926|ref|XP_001803874.1| hypothetical protein SNOG_13667 [Phaeosphaeria nodorum SN15]
gi|111057994|gb|EAT79114.1| hypothetical protein SNOG_13667 [Phaeosphaeria nodorum SN15]
Length = 97
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 62/82 (75%), Gaps = 6/82 (7%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---KK 64
+++ PIN IF+ LQS+A I +WL+E +RIEG++ GFDE+MNLV+DDA EV + KK
Sbjct: 12 KVLLPPINFIFKLLQSRATISVWLYENLGMRIEGKLRGFDEFMNLVIDDAVEVTLANAKK 71
Query: 65 NT---RKPLGRILLKGDNITLM 83
T R+ +G+ILLKGDNI+L+
Sbjct: 72 ETPEERRSIGQILLKGDNISLI 93
>gi|310798264|gb|EFQ33157.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 96
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 59/82 (71%), Gaps = 5/82 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT-- 66
++ PIN IF+ LQ + +QIWL+EQ +RIEG+I GFDE+MNLV+DDA EV T
Sbjct: 12 VLLPPINFIFKLLQQHSTVQIWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQVTKTNP 71
Query: 67 ---RKPLGRILLKGDNITLMMN 85
R+ LG+ILLKGDN++L+ +
Sbjct: 72 EEKRRALGQILLKGDNVSLIQS 93
>gi|189210563|ref|XP_001941613.1| small nuclear ribonucleoprotein E [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330923223|ref|XP_003300153.1| hypothetical protein PTT_11315 [Pyrenophora teres f. teres 0-1]
gi|187977706|gb|EDU44332.1| small nuclear ribonucleoprotein E [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311325858|gb|EFQ91754.1| hypothetical protein PTT_11315 [Pyrenophora teres f. teres 0-1]
Length = 93
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 60/80 (75%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK--- 64
+++ PIN IF+ LQS+A I +WL+E +RIEG++ GFDE+MNLV+DDA EV + K
Sbjct: 11 KVLLPPINFIFKLLQSRATISVWLYENLGMRIEGKLRGFDEFMNLVIDDAIEVKLAKKDA 70
Query: 65 -NTRKPLGRILLKGDNITLM 83
R+ +G+ILLKGDNI+L+
Sbjct: 71 PEERRKVGQILLKGDNISLI 90
>gi|303310042|ref|XP_003065034.1| Small nuclear ribonucleoprotein E , putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240104693|gb|EER22889.1| Small nuclear ribonucleoprotein E , putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320033257|gb|EFW15206.1| hypothetical protein CPSG_08394 [Coccidioides posadasii str.
Silveira]
gi|392867032|gb|EAS29780.2| LSM domain-containing protein [Coccidioides immitis RS]
Length = 94
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 61/80 (76%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI----K 63
+ + QPI+ IF+ LQ ++ + IWL+EQ +RIEG+I GFDE+MNLV+DDA EV + +
Sbjct: 11 KTLLQPIHFIFKLLQQRSTVSIWLYEQLAVRIEGKIRGFDEFMNLVIDDAVEVRVPTKDQ 70
Query: 64 KNTRKPLGRILLKGDNITLM 83
+ R+ LG+ILLKGDN++L+
Sbjct: 71 EEQRRQLGQILLKGDNVSLI 90
>gi|366996280|ref|XP_003677903.1| hypothetical protein NCAS_0H02460 [Naumovozyma castellii CBS
4309]
gi|342303773|emb|CCC71556.1| hypothetical protein NCAS_0H02460 [Naumovozyma castellii CBS
4309]
Length = 92
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 55/86 (63%), Gaps = 7/86 (8%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
+ M PIN IF FLQ + + WLFEQ RI G++ GFDE+MN+V+DDA E+ + T
Sbjct: 5 SKTMVPPINCIFNFLQQQTTVTFWLFEQVGTRIRGKVSGFDEFMNVVIDDAIEIPVDAKT 64
Query: 67 RKP-------LGRILLKGDNITLMMN 85
K LGRILLKGDNITL+ +
Sbjct: 65 GKELVSKGTKLGRILLKGDNITLITS 90
>gi|451995795|gb|EMD88263.1| hypothetical protein COCHEDRAFT_15041 [Cochliobolus
heterostrophus C5]
Length = 92
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 60/80 (75%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK--- 64
+++ PIN IF+ LQS+A I +WL+E +RIEG++ GFDE+MNLV+DDA EV + K
Sbjct: 9 KVLLPPINFIFKLLQSRATISVWLYENLGMRIEGKLRGFDEFMNLVIDDAIEVTLAKKDA 68
Query: 65 -NTRKPLGRILLKGDNITLM 83
R+ +G+ILLKGDNI+L+
Sbjct: 69 PEERRKVGQILLKGDNISLI 88
>gi|403214323|emb|CCK68824.1| hypothetical protein KNAG_0B03830 [Kazachstania naganishii CBS
8797]
Length = 90
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 56/78 (71%), Gaps = 7/78 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK---- 68
PIN IF +LQ++ + IWLFEQ RI G+I GFDE+MN+V+D+AEEV + K T +
Sbjct: 7 PINCIFNYLQNETSVTIWLFEQVSYRIRGKIRGFDEFMNVVVDEAEEVPLDKATGREIGE 66
Query: 69 ---PLGRILLKGDNITLM 83
LGRILLKGDNITL+
Sbjct: 67 KSVTLGRILLKGDNITLI 84
>gi|449297252|gb|EMC93270.1| hypothetical protein BAUCODRAFT_76081 [Baudoinia compniacensis
UAMH 10762]
Length = 97
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI----- 62
+++ PIN IF+ LQ ++ +QIWL+EQ +RIEG+I GFDE+MNLV+D+A EV
Sbjct: 11 KVLLPPINFIFKLLQQRSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDEAVEVKQPTKAD 70
Query: 63 --KKNTRKPLGRILLKGDNITLMMN 85
+N R+ LG+ILLKGDN+ L+ +
Sbjct: 71 PEPENPRRELGQILLKGDNVCLIQS 95
>gi|255717787|ref|XP_002555174.1| KLTH0G03102p [Lachancea thermotolerans]
gi|238936558|emb|CAR24737.1| KLTH0G03102p [Lachancea thermotolerans CBS 6340]
Length = 94
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 55/83 (66%), Gaps = 7/83 (8%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI--KKN 65
++ PIN IF FLQ + + WLFEQ RI GRI GFDE+MN+V+DDA E+ I K
Sbjct: 7 KVTVPPINCIFNFLQQQTLVNFWLFEQVQTRIRGRISGFDEFMNVVIDDASEIPIDTKTG 66
Query: 66 TRKP-----LGRILLKGDNITLM 83
+ P LGRILLKGDNITL+
Sbjct: 67 SELPDQAVKLGRILLKGDNITLI 89
>gi|45184940|ref|NP_982658.1| AAR116Wp [Ashbya gossypii ATCC 10895]
gi|44980549|gb|AAS50482.1| AAR116Wp [Ashbya gossypii ATCC 10895]
gi|374105858|gb|AEY94769.1| FAAR116Wp [Ashbya gossypii FDAG1]
Length = 97
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 61/90 (67%), Gaps = 11/90 (12%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-- 60
S K Q+ M PIN I+ +LQ + + WLF+Q +RI+GRI GFDE+MN+V+D+A EV
Sbjct: 2 SGKQQKPMMPPINCIYNYLQQQTTVTFWLFQQTQMRIKGRISGFDEFMNVVVDEAVEVPV 61
Query: 61 -------HIKKNTRKPLGRILLKGDNITLM 83
+ ++TR LGRILLKGDNITL+
Sbjct: 62 DEKSGEEQVGRSTR--LGRILLKGDNITLI 89
>gi|453085619|gb|EMF13662.1| LSM-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 99
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 9/87 (10%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI----- 62
+++ PIN IF+ LQ + +QIWL+EQ +RIEG+I GFDE+MNLV+DDA EV
Sbjct: 11 KVLLPPINFIFKLLQQHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEVQQSAKGE 70
Query: 63 ----KKNTRKPLGRILLKGDNITLMMN 85
K R+ LG+ILLKGDN+ L+ +
Sbjct: 71 TNEDSKEGRRELGQILLKGDNVCLIQS 97
>gi|167379643|ref|XP_001735222.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165902891|gb|EDR28600.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 84
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 54/76 (71%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
+ M P+ I + K R+ IWLFE LRIEG + GFD+Y+NLVL D EEV++K NTR
Sbjct: 3 KAMILPVKFIVNLAKHKQRVSIWLFENTALRIEGTLSGFDQYINLVLTDTEEVYLKTNTR 62
Query: 68 KPLGRILLKGDNITLM 83
+ +G ILLKG+NI+++
Sbjct: 63 RKIGTILLKGENISVI 78
>gi|401840391|gb|EJT43229.1| SME1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 85
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 7/83 (8%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK- 68
M PIN IF +LQ + + IWLFEQ +RI G+I+GFDE+MN+V+D+A EV + K
Sbjct: 1 MVPPINCIFNYLQQQTPVTIWLFEQVGIRIRGKIVGFDEFMNVVIDEAVEVPVNSTDGKE 60
Query: 69 ------PLGRILLKGDNITLMMN 85
LGR+LLKGDNITL+ +
Sbjct: 61 DVEKGTTLGRVLLKGDNITLITS 83
>gi|261204379|ref|XP_002629403.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis
SLH14081]
gi|239587188|gb|EEQ69831.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis
SLH14081]
gi|239614272|gb|EEQ91259.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis ER-3]
gi|327356357|gb|EGE85214.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis ATCC
18188]
Length = 94
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 60/81 (74%), Gaps = 4/81 (4%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
++ + PI+ IF+ LQ ++ + IWL+EQ +RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 10 RKTLLAPIHFIFKLLQQRSTVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKT 69
Query: 67 ----RKPLGRILLKGDNITLM 83
R+ LG+ILLKGDN++L+
Sbjct: 70 EEEKRRQLGQILLKGDNVSLI 90
>gi|315041917|ref|XP_003170335.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|311345369|gb|EFR04572.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
Length = 95
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT- 66
+ + PI+ IF+ LQ + + IWL+EQ +RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 11 KTLLAPIHFIFKLLQQRTTVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDAVEVKLATKTE 70
Query: 67 ---RKPLGRILLKGDNITLM 83
R+ LG+ILLKGDN++L+
Sbjct: 71 AESRRQLGQILLKGDNVSLI 90
>gi|327298737|ref|XP_003234062.1| small nuclear ribonucleoprotein E [Trichophyton rubrum CBS
118892]
gi|326464240|gb|EGD89693.1| small nuclear ribonucleoprotein E [Trichophyton rubrum CBS
118892]
gi|326472547|gb|EGD96556.1| small nuclear ribonucleoprotein SmE [Trichophyton tonsurans CBS
112818]
gi|326484188|gb|EGE08198.1| small nuclear ribonucleoprotein SmE [Trichophyton equinum CBS
127.97]
Length = 95
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT- 66
+ + PI+ IF+ LQ + + IWL+EQ +RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 11 KTLLAPIHFIFKLLQQRTTVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDAVEVKLATKTE 70
Query: 67 ---RKPLGRILLKGDNITLM 83
R+ LG+ILLKGDN++L+
Sbjct: 71 EESRRQLGQILLKGDNVSLI 90
>gi|363753610|ref|XP_003647021.1| hypothetical protein Ecym_5455 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890657|gb|AET40204.1| hypothetical protein Ecym_5455 [Eremothecium cymbalariae
DBVPG#7215]
Length = 93
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 60/88 (68%), Gaps = 7/88 (7%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S K Q+ M PIN I+ LQ ++ ++ WL++Q +RI+G+I GFDE+MN+V+DDA E+ I
Sbjct: 2 SGKQQKTMMPPINCIYSHLQQQSTVKFWLYQQSQMRIKGKISGFDEFMNVVIDDALELPI 61
Query: 63 KKNTRKP-------LGRILLKGDNITLM 83
+ T LGRILLKGDNITL+
Sbjct: 62 DEKTGAELPDKAVKLGRILLKGDNITLI 89
>gi|442758563|gb|JAA71440.1| Putative small nuclear ribonucleoprotein e [Ixodes ricinus]
Length = 82
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 60/79 (75%), Gaps = 2/79 (2%)
Query: 10 MTQPINLIFRFL-QSKARIQ-IWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
M Q INL F+ +++ARI+ L+E LRIEG IIGF EYMNLVLDDAEE++ K R
Sbjct: 1 MVQTINLYFQISNRTRARIRRFGLYENVILRIEGHIIGFGEYMNLVLDDAEEIYTKTKQR 60
Query: 68 KPLGRILLKGDNITLMMNT 86
K +GRILLKG+NITL+++T
Sbjct: 61 KQVGRILLKGENITLIVST 79
>gi|212543921|ref|XP_002152115.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
marneffei ATCC 18224]
gi|242787996|ref|XP_002481132.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
stipitatus ATCC 10500]
gi|210067022|gb|EEA21115.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
marneffei ATCC 18224]
gi|218721279|gb|EED20698.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
stipitatus ATCC 10500]
Length = 94
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 59/81 (72%), Gaps = 4/81 (4%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
++ + PI+ IF+ LQ ++ + IWL+EQ RIEG+I GFDE+MNLV+DDA EV + +
Sbjct: 10 RKTLLAPIHFIFKLLQQRSTVSIWLYEQLSFRIEGKIRGFDEFMNLVVDDAVEVRLATKS 69
Query: 67 ----RKPLGRILLKGDNITLM 83
R+ LG+ILLKGDN++L+
Sbjct: 70 EEEKRRNLGQILLKGDNVSLI 90
>gi|452980005|gb|EME79767.1| hypothetical protein MYCFIDRAFT_81234 [Pseudocercospora fijiensis
CIRAD86]
Length = 100
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 9/87 (10%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK---- 63
+++ PIN IF+ LQ + +QIWL+EQ +RIEG+I GFDE+MNLV+DDA EV
Sbjct: 12 KVLLPPINFIFKLLQQHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEVKQPGKGE 71
Query: 64 -----KNTRKPLGRILLKGDNITLMMN 85
K+ R+ +G+ILLKGDN+ L+ +
Sbjct: 72 TEEDVKDQRREVGQILLKGDNVCLIQS 98
>gi|367053583|ref|XP_003657170.1| hypothetical protein THITE_2122649 [Thielavia terrestris NRRL
8126]
gi|347004435|gb|AEO70834.1| hypothetical protein THITE_2122649 [Thielavia terrestris NRRL
8126]
Length = 90
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A+ +R++ PIN +FR LQ ++ +QIWL+EQ +RI G I GFDE+MNLV+ + +
Sbjct: 5 AAGGGRRVLLPPINFLFRLLQQRSTVQIWLYEQLSIRIVGTIRGFDEFMNLVVKQISKTN 64
Query: 62 IKKNTRKPLGRILLKGDNITLMMN 85
TR+PLG+ILLKGDN++L+ +
Sbjct: 65 -DTETRRPLGQILLKGDNVSLIQS 87
>gi|452842154|gb|EME44090.1| hypothetical protein DOTSEDRAFT_130967 [Dothistroma septosporum
NZE10]
Length = 99
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 9/87 (10%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK---- 63
+++ PIN IF+ LQ +QIWL+EQ +RIEG+I GFDE+MNLV+DDA EV
Sbjct: 11 KVLLPPINFIFKLLQQHNTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEVKQPAKGQ 70
Query: 64 -----KNTRKPLGRILLKGDNITLMMN 85
K+ R+ LG+ILLKGDN+ L+ +
Sbjct: 71 TEEDVKDQRRELGQILLKGDNVCLIQS 97
>gi|225679918|gb|EEH18202.1| hypothetical protein PABG_00765 [Paracoccidioides brasiliensis
Pb03]
gi|226291688|gb|EEH47116.1| hypothetical protein PADG_03214 [Paracoccidioides brasiliensis
Pb18]
Length = 94
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 59/80 (73%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT- 66
+ + PI+ IF+ LQ ++ + IWL+EQ +RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 11 KTLLAPIHFIFKLLQQRSVVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKTE 70
Query: 67 ---RKPLGRILLKGDNITLM 83
++ LG+ILLKGDN++L+
Sbjct: 71 EERKRQLGQILLKGDNVSLI 90
>gi|365984381|ref|XP_003669023.1| hypothetical protein NDAI_0C01190 [Naumovozyma dairenensis CBS
421]
gi|343767791|emb|CCD23780.1| hypothetical protein NDAI_0C01190 [Naumovozyma dairenensis CBS
421]
Length = 94
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+S + M PIN IF +LQ + + WL+EQ +RI G+I GFDE+MN+V+DDA E+
Sbjct: 1 MSSRTKSKAMVPPINCIFGYLQQQTPVTFWLYEQVGIRITGKISGFDEFMNVVIDDAIEI 60
Query: 61 HIKKNT-------RKPLGRILLKGDNITLMMN 85
+ T LGRI+LKGDNITL+ +
Sbjct: 61 PVDPKTGVENKAKGTQLGRIMLKGDNITLITS 92
>gi|156836424|ref|XP_001642276.1| hypothetical protein Kpol_218p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156112763|gb|EDO14418.1| hypothetical protein Kpol_218p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
+ M PIN IF +LQ + + WL+EQ +RI G+I GFDE+MN+V+DDA EV + T
Sbjct: 5 SKAMMPPINCIFNYLQQQTLVTFWLYEQVGIRIRGKIAGFDEFMNVVIDDALEVPVDVKT 64
Query: 67 RKP-------LGRILLKGDNITLMMNT 86
K LGRILLKGDNITL+ +
Sbjct: 65 GKEKLDEARKLGRILLKGDNITLLTSV 91
>gi|398397489|ref|XP_003852202.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
gi|339472083|gb|EGP87178.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
Length = 99
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 9/87 (10%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK---- 63
+++ PIN IF+ LQ + +QIWL+EQ +RIEG+I GFDE+MNLV+D+A EV
Sbjct: 11 KVLLPPINFIFKLLQQHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDEAVEVKQPGKGQ 70
Query: 64 -----KNTRKPLGRILLKGDNITLMMN 85
K+ R+ LG+ILLKGDN+ L+ +
Sbjct: 71 TEADVKDQRRELGQILLKGDNVCLIQS 97
>gi|425766459|gb|EKV05069.1| Small nuclear ribonucleoprotein SmE, putative [Penicillium
digitatum PHI26]
gi|425781600|gb|EKV19555.1| Small nuclear ribonucleoprotein SmE, putative [Penicillium
digitatum Pd1]
Length = 87
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 58/81 (71%), Gaps = 4/81 (4%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
++ + PI+ IF FLQ + + +WL+EQ RIEG I GFDE+MNLV+++A EV + T
Sbjct: 4 RKTLLAPIHCIFGFLQKRIPVSVWLYEQLAFRIEGTIRGFDEFMNLVIENAVEVRLATKT 63
Query: 67 ----RKPLGRILLKGDNITLM 83
R+PLG+ILLKGDN++L+
Sbjct: 64 EEEKRRPLGQILLKGDNVSLI 84
>gi|50302335|ref|XP_451102.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640233|emb|CAH02690.1| KLLA0A02299p [Kluyveromyces lactis]
Length = 93
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 7/91 (7%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+ +KV M PIN I+ +L + + WL+EQ RI G+I GFDE+MN+V+DDA E+
Sbjct: 1 MSGSKVGAPMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEI 60
Query: 61 HIKKNTRKP-------LGRILLKGDNITLMM 84
+ + K LGRI+LKGDNITL++
Sbjct: 61 AVDPKSGKESDDKAVFLGRIMLKGDNITLVV 91
>gi|295667135|ref|XP_002794117.1| hypothetical protein PAAG_03710 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226286223|gb|EEH41789.1| hypothetical protein PAAG_03710 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 155
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 59/80 (73%), Gaps = 4/80 (5%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT- 66
+ + PI+ IF+ LQ ++ + IWL+EQ +RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 72 KTLLAPIHFIFKLLQQRSVVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKTE 131
Query: 67 ---RKPLGRILLKGDNITLM 83
++ LG+ILLKGDN++L+
Sbjct: 132 EEKKRQLGQILLKGDNVSLI 151
>gi|336270688|ref|XP_003350103.1| hypothetical protein SMAC_00994 [Sordaria macrospora k-hell]
gi|380095497|emb|CCC06970.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 96
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 5/80 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----K 63
++ PIN +FR LQ + +QIWL+EQ +RI G I GFDE+MNLV+D+A EV + +
Sbjct: 12 VLLPPINFLFRLLQQHSTVQIWLYEQLHIRIIGTIRGFDEFMNLVIDNAIEVKLVSKTNE 71
Query: 64 KNTRKPLGRILLKGDNITLM 83
K R+ LG+ILLKGDN++L+
Sbjct: 72 KEERRELGQILLKGDNVSLI 91
>gi|410078143|ref|XP_003956653.1| hypothetical protein KAFR_0C05270 [Kazachstania africana CBS
2517]
gi|372463237|emb|CCF57518.1| hypothetical protein KAFR_0C05270 [Kazachstania africana CBS
2517]
Length = 94
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
ST + PIN IF +LQ + + WL+EQ +RI G+I GFDE+MN+V+DDA E+ +
Sbjct: 2 STSKPKAHVPPINCIFNYLQQQVPVTFWLYEQVGIRIRGKIRGFDEFMNIVIDDAVEIPV 61
Query: 63 KKNTRKP-------LGRILLKGDNITLMMN 85
T LGRILLKGDNITL+ +
Sbjct: 62 DSTTGTEQVDKGIKLGRILLKGDNITLITS 91
>gi|367008820|ref|XP_003678911.1| hypothetical protein TDEL_0A03680 [Torulaspora delbrueckii]
gi|359746568|emb|CCE89700.1| hypothetical protein TDEL_0A03680 [Torulaspora delbrueckii]
Length = 93
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 7/86 (8%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
+ M PIN IF +LQ + + WLFEQ +RI G+I GFDE+MN+V+DDA E+ + T
Sbjct: 5 SKAMVPPINCIFDYLQQQTLVTFWLFEQVGIRIRGKISGFDEFMNVVIDDALEIPVDPKT 64
Query: 67 -------RKPLGRILLKGDNITLMMN 85
+ LG+ILLKGDNITL+ +
Sbjct: 65 GVEDIEKGRKLGKILLKGDNITLITS 90
>gi|85107508|ref|XP_962388.1| hypothetical protein NCU06354 [Neurospora crassa OR74A]
gi|28923993|gb|EAA33152.1| predicted protein [Neurospora crassa OR74A]
Length = 96
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%), Gaps = 5/80 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT-- 66
++ PIN +FR LQ + +QIWL+EQ +RI G I GFDE+MNLV+D+A EV + T
Sbjct: 12 VLLPPINFLFRLLQQHSTVQIWLYEQLHIRIIGTIRGFDEFMNLVIDNAIEVKLVSKTNE 71
Query: 67 ---RKPLGRILLKGDNITLM 83
R+ LG+ILLKGDN++L+
Sbjct: 72 TEERRELGQILLKGDNVSLI 91
>gi|385302463|gb|EIF46594.1| small nuclear ribonucleoprotein e [Dekkera bruxellensis AWRI1499]
Length = 79
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR-K 68
M PIN IF++LQ ++++ IWL+EQ ++R+ G + GFDE+MN+VLDDA E+ + + +
Sbjct: 1 MVPPINQIFKYLQQQSKVTIWLYEQVNVRLTGVLKGFDEFMNVVLDDAVEISQGXSAKQR 60
Query: 69 PLGRILLKGDNITLM 83
LG +LLKGDNITL+
Sbjct: 61 KLGTVLLKGDNITLI 75
>gi|328859947|gb|EGG09054.1| hypothetical protein MELLADRAFT_96304 [Melampsora larici-populina
98AG31]
Length = 96
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S + QR+M QPIN+IF+ LQ+ + IWL++ + R+EG+IIGFDE+MN+VLD+A EV +
Sbjct: 2 SGRQQRVMVQPINVIFKHLQAGQLVHIWLYDNTEFRLEGKIIGFDEFMNVVLDNASEVWV 61
Query: 63 KKNTRKPLGRILLKGDNITLMMNT 86
K P + KG + L T
Sbjct: 62 KAKKGTPHREAVEKGTRVPLGGTT 85
>gi|417407598|gb|JAA50403.1| Putative small nuclear ribonucleoprotein e, partial [Desmodus
rotundus]
Length = 91
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ+ M QP NL+ R LQ+++RIQ WL EQ + R+EG + GF E ++LVLD+AEE+
Sbjct: 9 KVQKEMVQPTNLVLRSLQNRSRIQAWLSEQVNRRLEGCVTGFGECVSLVLDEAEEIQSXX 68
Query: 65 NTRKPLGRILLKGDNITLM 83
T++P G+ +LK DN L+
Sbjct: 69 XTKQP-GQNVLKADNSALL 86
>gi|397624778|gb|EJK67508.1| hypothetical protein THAOC_11446 [Thalassiosira oceanica]
Length = 222
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 10 MTQPINLIFRF----LQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN 65
+ P LI R ++ K R++IWL+E + IEG+IIGFDEYMN VLD A EV +K
Sbjct: 142 LCGPYILISRIPLAQIRKKTRVKIWLYEDTRMSIEGQIIGFDEYMNFVLDSATEVDMKTG 201
Query: 66 TRKPLGRILLKGDNITLM 83
R +GRILLKGD ITLM
Sbjct: 202 KRTDVGRILLKGDAITLM 219
>gi|254581938|ref|XP_002496954.1| ZYRO0D11968p [Zygosaccharomyces rouxii]
gi|238939846|emb|CAR28021.1| ZYRO0D11968p [Zygosaccharomyces rouxii]
Length = 93
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 7/80 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--- 69
PIN IF FLQ + + WLFEQ RI G+I GFDE+MN+V++DA E+ + T K
Sbjct: 11 PINCIFGFLQQQTVVTFWLFEQLGTRIRGKISGFDEFMNVVIEDATEIPVDPQTGKEHLD 70
Query: 70 ----LGRILLKGDNITLMMN 85
LG+ILLKGDNITL+ +
Sbjct: 71 RGKKLGKILLKGDNITLITS 90
>gi|440297058|gb|ELP89788.1| hypothetical protein EIN_425100 [Entamoeba invadens IP1]
Length = 85
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 54/79 (68%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
+ +R M P+ +++K ++ IWL+E ++IEGRI FD YMN+ L+ AEEV++K
Sbjct: 4 RAKRAMLAPVRYYADLIRNKQKVTIWLYENTAMKIEGRITAFDTYMNITLEQAEEVYVKT 63
Query: 65 NTRKPLGRILLKGDNITLM 83
+ R+ +G I+LKGDNI ++
Sbjct: 64 SNRRSIGNIMLKGDNIAVV 82
>gi|444314665|ref|XP_004177990.1| hypothetical protein TBLA_0A06790 [Tetrapisispora blattae CBS
6284]
gi|387511029|emb|CCH58471.1| hypothetical protein TBLA_0A06790 [Tetrapisispora blattae CBS
6284]
Length = 91
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 57/81 (70%), Gaps = 7/81 (8%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT--- 66
+ PINLIF +L+ ++ I++WL+E RI+G+I GFDE+MNLV+D+A E+ I T
Sbjct: 7 LIPPINLIFNYLEKQSTIKVWLYENTHSRIQGKISGFDEFMNLVIDNAIEIPIDNVTGVE 66
Query: 67 ----RKPLGRILLKGDNITLM 83
K LG+ILLKGDNITL+
Sbjct: 67 QIENGKKLGQILLKGDNITLI 87
>gi|378727606|gb|EHY54065.1| small nuclear ribonucleoprotein E [Exophiala dermatitidis
NIH/UT8656]
Length = 94
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---- 62
++ + PI+ IF LQ ++ + IWL+E RIEG+I GFDE+MNLV+DDA EV +
Sbjct: 10 RKTLLAPIHFIFSLLQKRSTVSIWLYENLRTRIEGKIRGFDEFMNLVIDDAVEVQLATRD 69
Query: 63 KKNTRKPLGRILLKGDNITLMMN 85
R+ LG+ILLKGDN++L+ +
Sbjct: 70 SPEKRRQLGQILLKGDNVSLIQS 92
>gi|145492122|ref|XP_001432059.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145499004|ref|XP_001435488.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399168|emb|CAK64662.1| unnamed protein product [Paramecium tetraurelia]
gi|124402621|emb|CAK68091.1| unnamed protein product [Paramecium tetraurelia]
Length = 95
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 54/79 (68%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
K Q+ +TQP++ F K +++IWL E +LRI+G++ GFDEY+NLVLD A E K
Sbjct: 9 KPQKKITQPLHAFFTLFTEKTQLEIWLVENDNLRIQGKLAGFDEYLNLVLDRAVEYDRKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
K LG+ILLKG+NI L+
Sbjct: 69 KATKELGKILLKGENIVLV 87
>gi|302309857|ref|XP_002999588.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049185|emb|CAR58061.1| unnamed protein product [Candida glabrata]
Length = 94
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+ + + PIN IF LQ + + WL+EQ +RI G I GFDE+MN+V+DDA EV
Sbjct: 1 MSGKSKGKAIVPPINCIFNHLQQQTPVTFWLYEQVGIRIRGTIRGFDEFMNVVIDDAVEV 60
Query: 61 HIKKNTRKP-------LGRILLKGDNITLM 83
I+ + + LGRILLKGDNITL+
Sbjct: 61 PIEAKSGRELVDQGTKLGRILLKGDNITLI 90
>gi|367001997|ref|XP_003685733.1| hypothetical protein TPHA_0E02070 [Tetrapisispora phaffii CBS
4417]
gi|357524032|emb|CCE63299.1| hypothetical protein TPHA_0E02070 [Tetrapisispora phaffii CBS
4417]
Length = 94
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 7/84 (8%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
+ + PIN +F FLQ + + WL+EQ RI G++ GFDE+MN+V+D+A E+ + T
Sbjct: 5 SKAVIPPINSVFNFLQQQTLVSFWLYEQVGFRIRGKVAGFDEFMNVVIDNAIEIPVDAET 64
Query: 67 -------RKPLGRILLKGDNITLM 83
K LGRILLKGDNITL+
Sbjct: 65 GIERVTDGKKLGRILLKGDNITLI 88
>gi|432090682|gb|ELK24023.1| Small nuclear ribonucleoprotein E [Myotis davidii]
Length = 128
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 20/88 (22%)
Query: 5 KVQRIMTQPINLIFRFLQ-------------------SKARIQIWLFEQKDLRIEGRIIG 45
KVQ++M QPI + + Q +++RIQ+WL+EQ ++RIEG IIG
Sbjct: 9 KVQKVMVQPI-VSYAECQDREVRARKRGGKADGGLGGARSRIQVWLYEQVNMRIEGCIIG 67
Query: 46 FDEYMNLVLDDAEEVHIKKNTRKPLGRI 73
FDEYMNLVLDDAEE+H K +RK L R+
Sbjct: 68 FDEYMNLVLDDAEEIHSKTKSRKQLERV 95
>gi|332248094|ref|XP_003273196.1| PREDICTED: small nuclear ribonucleoprotein E [Nomascus
leucogenys]
Length = 52
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/47 (78%), Positives = 42/47 (89%)
Query: 37 LRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+RIEG IIGFDEYMNLVLDDAEE+H K +RK LGRI+LKGDNITL+
Sbjct: 1 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 47
>gi|119589573|gb|EAW69167.1| hCG23490, isoform CRA_b [Homo sapiens]
Length = 52
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 41/47 (87%)
Query: 37 LRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+RIEG IIGFDEYMNLVLDDAEE+H K +RK LGRI+LKG NITL+
Sbjct: 1 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLL 47
>gi|431892912|gb|ELK03340.1| AP-1 complex subunit mu-2 [Pteropus alecto]
Length = 181
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 41/48 (85%)
Query: 24 KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K +RK L
Sbjct: 18 RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLA 65
>gi|401885285|gb|EJT49407.1| small nuclear ribonucleoprotein E [Trichosporon asahii var. asahii
CBS 2479]
gi|406694808|gb|EKC98129.1| small nuclear ribonucleoprotein E [Trichosporon asahii var. asahii
CBS 8904]
Length = 118
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 37/116 (31%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII-------------GFDEYMNLV 53
+++M QPIN++F FLQ R+QIWL++ + R+E II GFDE+MN+V
Sbjct: 4 RKVMVQPINILFSFLQKHQRVQIWLYDNNEFRLEAFIIVGLTLRGQRADGQGFDEFMNVV 63
Query: 54 LDDAEEVHIKKNTRKP----------------------LGRILLKGDNITLMMNTG 87
LD+ EEV+ + KP GRILLKGDNITL+ G
Sbjct: 64 LDETEEVY--DCSAKPGKEVKPRRSLGELRQYGNALTLAGRILLKGDNITLVQPVG 117
>gi|389602182|ref|XP_001566763.2| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505349|emb|CAM40282.2| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 86
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 53/84 (63%)
Query: 4 TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK 63
+ + R M P ++ RF+QS R+ +WL R+EG ++G+DE+MN+VL D E +++
Sbjct: 2 SSLTRQMENPTGVVHRFMQSHQRVCVWLVHDSHTRLEGNLLGYDEFMNVVLGDTTETNLR 61
Query: 64 KNTRKPLGRILLKGDNITLMMNTG 87
+ R LG+ILL+ DN+ ++ G
Sbjct: 62 NDKRYNLGKILLRSDNVGVIHPIG 85
>gi|440468395|gb|ELQ37560.1| sm snRNP core protein Sme1 [Magnaporthe oryzae Y34]
gi|440482793|gb|ELQ63252.1| sm snRNP core protein Sme1 [Magnaporthe oryzae P131]
Length = 126
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 5/68 (7%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH--IKKN 65
+I+ PIN IF+ LQS A + IWL+EQ +RIEG+I GFDE+MNLV+DDA EV K N
Sbjct: 11 KILLPPINCIFKLLQSHATVSIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEVKQITKDN 70
Query: 66 T---RKPL 70
T R+PL
Sbjct: 71 TEEKRRPL 78
>gi|72390193|ref|XP_845391.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma brucei TREU927]
gi|9837178|gb|AAG00463.1|AF280395_1 Sm-E [Trypanosoma brucei]
gi|62360561|gb|AAX80973.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma brucei]
gi|70801926|gb|AAZ11832.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328791|emb|CBH11769.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma brucei
gambiense DAL972]
Length = 86
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 52/78 (66%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
M +P ++ R+L+ R+ +WL + ++IEG ++G+DE+MN+VL DA EVH+K
Sbjct: 8 MVKPTVVVHRYLKESQRVCVWLVHETKMKIEGVLLGYDEFMNVVLGDATEVHLKTGEVVQ 67
Query: 70 LGRILLKGDNITLMMNTG 87
LG+ILL+ DN+ ++ G
Sbjct: 68 LGKILLRSDNVGVIHPIG 85
>gi|393247818|gb|EJD55325.1| hypothetical protein AURDEDRAFT_50301, partial [Auricularia
delicata TFB-10046 SS5]
Length = 65
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 24 KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN-TRKPLGRILLKGDNITL 82
+ I IWL++ ++RIEGRIIGFDE+MN+V+DDA EV+ K R+ LGRILLKGD ITL
Sbjct: 1 RTPISIWLYDNVEMRIEGRIIGFDEFMNVVIDDATEVYTDKTKERRLLGRILLKGDAITL 60
Query: 83 M 83
+
Sbjct: 61 I 61
>gi|401425575|ref|XP_003877272.1| small nuclear ribonucleoprotein polypeptide e,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493517|emb|CBZ28805.1| small nuclear ribonucleoprotein polypeptide e,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 86
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
R M P ++ RF+Q R+ +WL LR+EG ++G+DE+MN+VL D E +++ N
Sbjct: 6 RQMENPTGVVHRFMQDHQRVCVWLVHDPQLRLEGNLLGYDEFMNVVLGDTTETNLRNNKS 65
Query: 68 KPLGRILLKGDNITLMMNTG 87
LG+ILL+ DN+ ++ G
Sbjct: 66 YRLGKILLRSDNVGVIYPVG 85
>gi|71412367|ref|XP_808372.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma cruzi strain CL
Brener]
gi|70872563|gb|EAN86521.1| small nuclear ribonucleoprotein Sm-E, putative [Trypanosoma cruzi]
Length = 115
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M++T Q M +P +++ R++ R+ +WL ++IEG I+G+DE+MN+VL DA EV
Sbjct: 30 MSATTKQ--MVKPTSIVHRYMTEGQRVCVWLVHDTKMKIEGVILGYDEFMNVVLGDASEV 87
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTG 87
H K +G+ILL+ DNI ++ G
Sbjct: 88 HHKTKEVVHVGKILLRSDNIGVIHPIG 114
>gi|71666529|ref|XP_820222.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma cruzi strain CL
Brener]
gi|70885559|gb|EAN98371.1| small nuclear ribonucleoprotein Sm-E, putative [Trypanosoma
cruzi]
Length = 86
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M++T Q M +P +++ R++ R+ +WL ++IEG I+G+DE+MN+VL DA EV
Sbjct: 1 MSATTKQ--MVKPTSIVHRYMTEGQRVCVWLVHDTKMKIEGVILGYDEFMNVVLGDASEV 58
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTG 87
H K +G+ILL+ DNI ++ G
Sbjct: 59 HHKTKEVVHVGKILLRSDNIGVIHPIG 85
>gi|6062981|gb|AAF03088.1|AF126283_1 SmE protein [Leptomonas collosoma]
Length = 94
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 53/80 (66%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
++M +P ++I +F+ ++ R+ +WL ++IEG ++G+DE+MN+VL DA E + K
Sbjct: 14 KLMVKPSSVIHKFMTTQQRVCVWLVHDAHIKIEGNLLGYDEFMNVVLGDATETNSKTKES 73
Query: 68 KPLGRILLKGDNITLMMNTG 87
LG+ILL+ DN+ ++ G
Sbjct: 74 THLGKILLRSDNVGVVHAIG 93
>gi|146093720|ref|XP_001466971.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania infantum JPCM5]
gi|134071335|emb|CAM70021.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania infantum JPCM5]
Length = 86
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
R M P ++ RF+Q R+ +WL +R+EG ++G+DE+MN+VL D E +++ N
Sbjct: 6 RQMENPTGVVHRFMQDHQRVCVWLVHDPQMRLEGNLLGYDEFMNVVLGDTTETNLRNNKS 65
Query: 68 KPLGRILLKGDNITLMMNTG 87
LG+ILL+ DN+ ++ G
Sbjct: 66 YRLGKILLRSDNVGVIYPIG 85
>gi|398019352|ref|XP_003862840.1| small nuclear ribonucleoprotein polypeptide e, putative
[Leishmania donovani]
gi|322501071|emb|CBZ36148.1| small nuclear ribonucleoprotein polypeptide e, putative
[Leishmania donovani]
Length = 86
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
R M P ++ RF+Q R+ +WL +R+EG ++G+DE+MN+VL D E +++ N
Sbjct: 6 RQMENPTGVVHRFMQDHQRVCVWLVHDPQMRLEGNLLGYDEFMNVVLGDTTETNLRNNKS 65
Query: 68 KPLGRILLKGDNITLMMNTG 87
LG+ILL+ DN+ ++ G
Sbjct: 66 YRLGKILLRSDNVGVIYPIG 85
>gi|171683351|ref|XP_001906618.1| hypothetical protein [Podospora anserina S mat+]
gi|170941635|emb|CAP67289.1| unnamed protein product [Podospora anserina S mat+]
Length = 96
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 58/80 (72%), Gaps = 5/80 (6%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIKKN-- 65
++ PIN +F+ LQ + +QIWL+EQ +RI G I GFDE+MNLV+DDA EV I K
Sbjct: 12 VLLPPINFLFKLLQQRTPVQIWLYEQLSIRIIGIIRGFDEFMNLVIDDAVEVKQISKTND 71
Query: 66 --TRKPLGRILLKGDNITLM 83
TR+ LG+ILLKGDN++L+
Sbjct: 72 TETRRNLGQILLKGDNVSLI 91
>gi|67541130|ref|XP_664339.1| hypothetical protein AN6735.2 [Aspergillus nidulans FGSC A4]
gi|40739363|gb|EAA58553.1| hypothetical protein AN6735.2 [Aspergillus nidulans FGSC A4]
Length = 91
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN 65
++ + PI+ IF+ LQ ++ + IWL+EQ RIEG+I GFDE+MNLV+DDA EV +
Sbjct: 9 ARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLATK 68
Query: 66 T----RKPLG 71
+ R+PLG
Sbjct: 69 SEEEKRRPLG 78
>gi|340508793|gb|EGR34424.1| monoglyceride lipase, putative [Ichthyophthirius multifiliis]
Length = 322
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI--IGFDEYMNLVLDDAEEV 60
S K + +T P+ IF FLQ R+QIWL+E DL++EG+I IGFDEYMN+V+D+A EV
Sbjct: 2 SKKFTKTITNPLTTIFGFLQKSVRVQIWLYENTDLKLEGKIVVIGFDEYMNMVIDEAIEV 61
Query: 61 HIKKNTRKPLGRILL 75
+ K+ +P I L
Sbjct: 62 Y--KSKVQPPKAICL 74
>gi|123468440|ref|XP_001317438.1| Sm protein [Trichomonas vaginalis G3]
gi|121900172|gb|EAY05215.1| Sm protein [Trichomonas vaginalis G3]
Length = 93
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 53/76 (69%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
++ P+ + +L+ +AR+++ L + + +EG ++GFDEYMNLVL D+ EV+ K+NTR
Sbjct: 10 HLLEPPLKIYVSYLKERARLRVHLNDNSKMYMEGNLLGFDEYMNLVLGDSYEVYPKENTR 69
Query: 68 KPLGRILLKGDNITLM 83
PLG LL+G+ + ++
Sbjct: 70 VPLGTSLLRGECVGMV 85
>gi|157872335|ref|XP_001684716.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania major strain Friedlin]
gi|68127786|emb|CAJ06176.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania major strain Friedlin]
Length = 86
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR 67
R M P ++ RF+Q R+ +WL +R+EG ++G+DE+MN+VL D E +++ +
Sbjct: 6 RQMENPTGVVHRFMQDHQRVCVWLVHDPQIRLEGNLLGYDEFMNVVLGDTTETNLRNSKS 65
Query: 68 KPLGRILLKGDNITLMMNTG 87
LG+ILL+ DN+ ++ G
Sbjct: 66 YRLGKILLRSDNVGVIYPIG 85
>gi|340054134|emb|CCC48428.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma vivax Y486]
Length = 86
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M++T Q M +P N++ R+++ R+ +WL ++IEG ++G+DE+MN+VL DA EV
Sbjct: 1 MSTTTKQ--MIKPTNVVHRYMKEGQRVCVWLVHDTKMKIEGVLLGYDEFMNVVLGDAAEV 58
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNTG 87
K +G+ILL+ DN+ L+ G
Sbjct: 59 IQKTGETVQVGKILLRSDNVGLIHPIG 85
>gi|119178728|ref|XP_001241003.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 91
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 43/55 (78%)
Query: 8 RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+ + QPI+ IF+ LQ ++ + IWL+EQ +RIEG+I GFDE+MNLV+DDA EV +
Sbjct: 11 KTLLQPIHFIFKLLQQRSTVSIWLYEQLAVRIEGKIRGFDEFMNLVIDDAVEVRV 65
>gi|225559154|gb|EEH07437.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240282077|gb|EER45580.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325088218|gb|EGC41528.1| small nuclear ribonucleoprotein E [Ajellomyces capsulatus H88]
Length = 113
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
++ + PI+ IF+ LQ ++ + IWL+EQ +RIEG+I GFDE+MNLV+DDA EV + T
Sbjct: 10 RKTLLAPIHFIFKLLQQRSVVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKT 69
Query: 67 ----RKPLG 71
R+ LG
Sbjct: 70 EDEKRRQLG 78
>gi|449524146|ref|XP_004169084.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 1
[Cucumis sativus]
gi|449524148|ref|XP_004169085.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 2
[Cucumis sativus]
Length = 39
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 37/39 (94%)
Query: 50 MNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
MNLVLDDAEEV++KK ++K LGRILLKGDNITLMMN+GK
Sbjct: 1 MNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSGK 39
>gi|408993|gb|AAC60592.1| fusion protein [Homo sapiens]
gi|737057|prf||1921318A B-raf oncogene
Length = 104
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 37/40 (92%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG II
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48
>gi|322702469|gb|EFY94114.1| LSM domain-containing protein [Metarhizium anisopliae ARSEF 23]
Length = 190
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 24/87 (27%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI-------------------IGFDEY 49
++ PIN+IF+ LQS A + +WL+EQ +RIEG+I GFDE+
Sbjct: 12 VLLPPINMIFKLLQSNATVSVWLYEQLSIRIEGKIRVRTPFKLKSVRCHADWLSQGFDEF 71
Query: 50 MNLVLDDAEEVHI-----KKNTRKPLG 71
MNLV+DDA EV K TR+ LG
Sbjct: 72 MNLVIDDAVEVSQVTKTNDKETRRQLG 98
>gi|399949646|gb|AFP65304.1| small nuclear ribonucleoprotein E [Chroomonas mesostigmatica
CCMP1168]
Length = 82
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
++QPINL+FRF Q++ I I L K I G I+GFDE+MN+VL++A E++
Sbjct: 2 ISQPINLLFRFFQNRNLISITLQNAKLNTIIGIILGFDEFMNIVLENAFEIN-SSGKNIF 60
Query: 70 LGRILLKGDNITLMMNTGK 88
LG I++KGD I ++ + K
Sbjct: 61 LGHIMIKGDCIAIISDLSK 79
>gi|390341850|ref|XP_003725544.1| PREDICTED: small nuclear ribonucleoprotein E-like
[Strongylocentrotus purpuratus]
Length = 48
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/36 (80%), Positives = 31/36 (86%)
Query: 50 MNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 85
MN+VLDDAEE H K TRKPLGRILLKGDNITL+ N
Sbjct: 1 MNVVLDDAEEYHKKNKTRKPLGRILLKGDNITLIQN 36
>gi|162606552|ref|XP_001713306.1| putative small nuclear ribonucleoprotein E [Guillardia theta]
gi|12580772|emb|CAC27090.1| putative small nuclear ribonucleoprotein E [Guillardia theta]
Length = 78
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR-- 67
M QPIN +F+FL+ K + I D +EG +IGFDE+MNLV+++ E KK++
Sbjct: 1 MIQPINQLFKFLKEKNLVTIIFKGSNDYILEGNLIGFDEFMNLVIENTTE---KKDSLIV 57
Query: 68 KPLGRILLKGDNI 80
+ LG +L+KGD+I
Sbjct: 58 RDLGYVLIKGDSI 70
>gi|449017577|dbj|BAM80979.1| Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 105
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV--HIKKNTRK-- 68
P L+ + +AR+++WLFE +EG + GFDE+ NLVL D E K+ R+
Sbjct: 12 PEQLLATLARQQARVEVWLFENTRYSLEGTLRGFDEHTNLVLVDTVEQWGSTAKHKRRTV 71
Query: 69 PLGRILLKGDNITLMMNTG 87
LG ILLKG+N+ L+ + G
Sbjct: 72 ALGTILLKGENVVLVRSLG 90
>gi|161899071|ref|XP_001712762.1| mRNA splicing protein [Bigelowiella natans]
gi|75756255|gb|ABA27150.1| mRNA splicing protein [Bigelowiella natans]
Length = 80
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
+++M PINL++R+L K I + L ++K+ I G+IIGFDEYMN+VL +A V K
Sbjct: 2 KKLMVHPINLLYRYLIGKNIILVCL-KEKNKTINGKIIGFDEYMNIVLSEA--VAKNKEV 58
Query: 67 RKPLGRILLKGDNIT 81
K IL+KG+ I+
Sbjct: 59 EKIKNLILVKGNQIS 73
>gi|449018855|dbj|BAM82257.1| similar to Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 181
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV--HIKKNTRK-- 68
P L+ + +AR+++WLFE +EG + GFDE+ NLVL D E K+ R+
Sbjct: 12 PEQLLATLARQQARVEVWLFENTRYSLEGTLRGFDEHTNLVLVDTVEQWGSTAKHKRRTV 71
Query: 69 PLGRILLKGDNITLMMNTG 87
LG ILLKG+N+ L+ + G
Sbjct: 72 ALGTILLKGENVVLVRSLG 90
>gi|449016467|dbj|BAM79869.1| Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 105
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV--HIKKNTRK-- 68
P L+ + +AR+++WLFE +EG + GFDE+ NLVL D E K+ R+
Sbjct: 12 PEQLLATLARQQARVEVWLFENTRYSLEGTLRGFDEHTNLVLVDTVEQWGSTAKHKRRTV 71
Query: 69 PLGRILLKGDNITLMMNTG 87
LG ILLKG+N+ L+ + G
Sbjct: 72 ALGTILLKGENVVLVRSLG 90
>gi|51847692|gb|AAU10483.1| small nuclear ribonucleoprotein polypepide-E [Felis catus]
Length = 32
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
G IIGFDEYMNLVLDDAEE+H K +RK LG
Sbjct: 2 GCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 32
>gi|407921630|gb|EKG14771.1| hypothetical protein MPH_08046 [Macrophomina phaseolina MS6]
Length = 83
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + SK IW+ + D G ++GFD+Y+N+VL+D E + N K L +
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYQGNQTK-LSK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|401825470|ref|XP_003886830.1| LSM domain-containing protein [Encephalitozoon hellem ATCC 50504]
gi|392997986|gb|AFM97849.1| LSM domain-containing protein [Encephalitozoon hellem ATCC 50504]
Length = 73
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 17/77 (22%)
Query: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIE--GRIIGFDEYMNLVLDDAEEVHIKKNTRK 68
T P+ ++ FL ++IW +KD+R + GRI+GFDEYMNLV+D+ +
Sbjct: 8 TLPLEKLYDFLSKSTDVEIW---EKDIRTKHRGRIVGFDEYMNLVIDNGAK--------- 55
Query: 69 PLGRILLKGDNITLMMN 85
R LLKGD + +++
Sbjct: 56 ---RYLLKGDCVCVVLG 69
>gi|358389647|gb|EHK27239.1| hypothetical protein TRIVIDRAFT_73167 [Trichoderma virens Gv29-8]
Length = 84
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + SK IW+ + D G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNHTK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|212532417|ref|XP_002146365.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
gi|210071729|gb|EEA25818.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
Length = 83
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + SK IW+ + D G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYAGNQEK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+N+ +++ G+
Sbjct: 62 ILLNGNNVCMLIPGGE 77
>gi|303388441|ref|XP_003072455.1| small nuclear ribonucleoprotein E [Encephalitozoon intestinalis
ATCC 50506]
gi|303301595|gb|ADM11095.1| small nuclear ribonucleoprotein E [Encephalitozoon intestinalis
ATCC 50506]
Length = 73
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 17/75 (22%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDL--RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
P+ I+ FL A ++IW +KD+ R +GRI+GFDEYMN+V+D +
Sbjct: 10 PLEKIYAFLSRAADVEIW---EKDIGVRHKGRIVGFDEYMNIVMDSGAK----------- 55
Query: 71 GRILLKGDNITLMMN 85
R LLKGD I+++
Sbjct: 56 -RYLLKGDCISVVFG 69
>gi|296805413|ref|XP_002843531.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238844833|gb|EEQ34495.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 84
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI R + SK IW+ + D G ++GFD+Y+N+VL+D E K L +
Sbjct: 7 PLELIDRCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGGQTK-LSK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+N+ +++ G+
Sbjct: 62 ILLNGNNVCMLIPGGE 77
>gi|342878459|gb|EGU79796.1| hypothetical protein FOXB_09655 [Fusarium oxysporum Fo5176]
gi|408388349|gb|EKJ68035.1| hypothetical protein FPSE_11846 [Fusarium pseudograminearum
CS3096]
Length = 83
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGTLVGFDDYVNMVLEDVTEFDYSGNHTK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|402081161|gb|EJT76306.1| U6 snRNA-associated Sm-like protein LSm5 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 82
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYSGNHTK-LSK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|336473000|gb|EGO61160.1| hypothetical protein NEUTE1DRAFT_116005 [Neurospora tetrasperma
FGSC 2508]
gi|350293750|gb|EGZ74835.1| putative U6 SNRNA-associated SM-LIKE protein LSM5 [Neurospora
tetrasperma FGSC 2509]
gi|380092260|emb|CCC10036.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 84
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKEFSGTLVGFDDYVNMVLEDVTEFDYSGNHTK-LKK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|310792345|gb|EFQ27872.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 82
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNHTK-LSK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|396458116|ref|XP_003833671.1| similar to U6 snRNA-associated Sm-like protein LSm5
[Leptosphaeria maculans JN3]
gi|312210219|emb|CBX90306.1| similar to U6 snRNA-associated Sm-like protein LSm5
[Leptosphaeria maculans JN3]
Length = 84
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S QIW+ G+++GFD+Y+N+VL+D E+ + K L +
Sbjct: 8 PLELIDKCVGS----QIWVIMNGGKEFTGKLVGFDDYVNMVLEDVTEIDASEGNVK-LPK 62
Query: 73 ILLKGDNITLMMNTG 87
ILL G+NI +M+ G
Sbjct: 63 ILLNGNNICMMVPGG 77
>gi|16944624|emb|CAD11394.1| probable U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Neurospora
crassa]
Length = 84
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKEFAGTLVGFDDYVNMVLEDVTEFDYSGNHTK-LKK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|367025621|ref|XP_003662095.1| hypothetical protein MYCTH_2302246 [Myceliophthora thermophila
ATCC 42464]
gi|347009363|gb|AEO56850.1| hypothetical protein MYCTH_2302246 [Myceliophthora thermophila
ATCC 42464]
Length = 85
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFAGTLVGFDDYVNMVLEDVTEFDYSGNHTK-LKK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|358392255|gb|EHK41659.1| hypothetical protein TRIATDRAFT_250596 [Trichoderma atroviride
IMI 206040]
Length = 84
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKEFSGTLMGFDDYVNMVLEDVTEFDYSGNHTK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|302909361|ref|XP_003050056.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730993|gb|EEU44343.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 83
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNHTK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|380474440|emb|CCF45778.1| U6 snRNA-associated Sm-like protein LSm5 [Colletotrichum
higginsianum]
Length = 82
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNHTK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|440465859|gb|ELQ35159.1| hypothetical protein OOU_Y34scaffold00725g17 [Magnaporthe oryzae
Y34]
Length = 82
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N K + +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYSGNYTK-MSK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|340522327|gb|EGR52560.1| predicted protein [Trichoderma reesei QM6a]
Length = 84
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYTGNHTK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|315045688|ref|XP_003172219.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
gi|311342605|gb|EFR01808.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
Length = 84
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + SK IW+ + D G ++GFD+Y+N+VL+D E K L +
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGGQTK-LSK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+N+ +++ G+
Sbjct: 62 ILLNGNNVCMLIPGGE 77
>gi|389623205|ref|XP_003709256.1| U6 snRNA-associated Sm-like protein LSm5 [Magnaporthe oryzae
70-15]
gi|351648785|gb|EHA56644.1| U6 snRNA-associated Sm-like protein LSm5 [Magnaporthe oryzae
70-15]
gi|440486474|gb|ELQ66335.1| hypothetical protein OOW_P131scaffold00400g22 [Magnaporthe oryzae
P131]
Length = 82
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N K + +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYSGNHTK-MSK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|449329361|gb|AGE95634.1| small nuclear ribonucleoprotein e [Encephalitozoon cuniculi]
Length = 111
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 17/77 (22%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDL--RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
P+ I+ FL ++IW +KD+ + +GRI+GFDEYMN+V+D
Sbjct: 48 PLEKIYDFLSRSIDVEIW---EKDMGAKHKGRIVGFDEYMNVVVDGET------------ 92
Query: 71 GRILLKGDNITLMMNTG 87
GR LLKGD I ++ G
Sbjct: 93 GRYLLKGDCICVIFGKG 109
>gi|396080948|gb|AFN82568.1| small nuclear ribonucleoprotein E [Encephalitozoon romaleae
SJ-2008]
Length = 73
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 17/75 (22%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIE--GRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
P+ ++ FL ++IW +KD+R++ GRI+GFDEYMNLV+D+ +
Sbjct: 10 PLEKLYDFLSKSIDVEIW---EKDIRVKHKGRIVGFDEYMNLVIDNGTK----------- 55
Query: 71 GRILLKGDNITLMMN 85
R +LKGD I ++
Sbjct: 56 -RYILKGDCICVIFG 69
>gi|410076164|ref|XP_003955664.1| hypothetical protein KAFR_0B02310 [Kazachstania africana CBS
2517]
gi|372462247|emb|CCF56529.1| hypothetical protein KAFR_0B02310 [Kazachstania africana CBS
2517]
Length = 87
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
M+ P L + +W+ Q + G ++GFD+++N+++DDA+E + N
Sbjct: 1 MSLPDVLPLEVIDKTINQPVWIILQSNREFTGTLVGFDDFVNVIIDDAKEYIVNDNGENE 60
Query: 70 L-----GRILLKGDNITLMMNTGK 88
L GR+LL G NI +++ GK
Sbjct: 61 LVMEHHGRLLLSGGNINMLVPGGK 84
>gi|392512547|emb|CAD25131.2| SMALL NUCLEAR RIBONUCLEOPROTEIN E [Encephalitozoon cuniculi
GB-M1]
Length = 73
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 17/77 (22%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDL--RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
P+ I+ FL ++IW +KD+ + +GRI+GFDEYMN+V+D
Sbjct: 10 PLEKIYDFLSRSIDVEIW---EKDMGAKHKGRIVGFDEYMNVVVD------------GET 54
Query: 71 GRILLKGDNITLMMNTG 87
GR LLKGD I + G
Sbjct: 55 GRYLLKGDCICAIFGKG 71
>gi|327304591|ref|XP_003236987.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326459985|gb|EGD85438.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 84
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + SK IW+ + D G ++GFD+Y+N+VL+D E K L +
Sbjct: 7 PLELIDKCVGSK----IWIVMKGDKEFCGTLLGFDDYVNMVLEDVTEFDYSGGQTK-LSK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+N+ +++ G+
Sbjct: 62 ILLNGNNVCMLIPGGE 77
>gi|19074021|ref|NP_584627.1| SMALL NUCLEAR RIBONUCLEOPROTEIN E [Encephalitozoon cuniculi GB-M1]
Length = 111
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 17/77 (22%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDL--RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
P+ I+ FL ++IW +KD+ + +GRI+GFDEYMN+V+D
Sbjct: 48 PLEKIYDFLSRSIDVEIW---EKDMGAKHKGRIVGFDEYMNVVVDGET------------ 92
Query: 71 GRILLKGDNITLMMNTG 87
GR LLKGD I + G
Sbjct: 93 GRYLLKGDCICAIFGKG 109
>gi|115395198|ref|XP_001213486.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193055|gb|EAU34755.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 83
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E T++ L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKNDKEFSGTLLGFDDYVNMVLEDVTEFDY-SGTQEKLPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+N+ +++ G+
Sbjct: 62 ILLNGNNVCMLIPGGE 77
>gi|261190750|ref|XP_002621784.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239591207|gb|EEQ73788.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239614892|gb|EEQ91879.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
gi|327352333|gb|EGE81190.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 84
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIKKNTRKPLG 71
P+ LI + + SK IW+ + D G ++GFD+Y+N+VL+D E + T+ P
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFAGTLLGFDDYVNMVLEDVTEFDYTGAQTKLP-- 60
Query: 72 RILLKGDNITLMMNTGK 88
+ILL G+NI +++ G+
Sbjct: 61 KILLNGNNICMLIPGGE 77
>gi|320032480|gb|EFW14433.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
Length = 84
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIKKNTRKPLG 71
P+ LI + + SK IW+ + D G ++GFD+Y+N+VL+D E + T+ P
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDREFSGTLLGFDDYVNMVLEDVTEFDYTAAQTKLP-- 60
Query: 72 RILLKGDNITLMMNTGK 88
+ILL G+N+ +++ G+
Sbjct: 61 KILLNGNNVCMLIPGGE 77
>gi|432328294|ref|YP_007246438.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135003|gb|AGB04272.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 72
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 8/75 (10%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRI-EGRIIGFDEYMNLVLDDAEEVHIKKNTRK 68
MT P+ ++ F+ RI + L KD R+ EG+++GFD+YMN+VL D EE ++ TR+
Sbjct: 1 MTMPLKMLENFMNK--RISLLL---KDNRVLEGKLVGFDDYMNMVLMDTEE-KTEEMTRR 54
Query: 69 PLGRILLKGDNITLM 83
LG ++L+G+N+ M
Sbjct: 55 -LGTVILRGNNVVRM 68
>gi|295657072|ref|XP_002789110.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284564|gb|EEH40130.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 84
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIKKNTRKPLG 71
P+ LI + + SK IW+ + D G ++GFD+Y+N+VL+D E + T+ P
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYTGAQTKLP-- 60
Query: 72 RILLKGDNITLMMNTGK 88
+ILL G+N+ +++ G+
Sbjct: 61 KILLNGNNVCMLIPGGE 77
>gi|395517528|ref|XP_003762928.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Sarcophilus harrisii]
Length = 140
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
V R ++ P L+ + + S RI I + + D I G ++GFD+++N+VL+D E I
Sbjct: 55 PVTRSVSAPPELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 110
Query: 65 NTRK--PLGRILLKGDNITLMMNTGK 88
R+ L +ILL G+NIT+++ G+
Sbjct: 111 EGRRITKLDQILLNGNNITMLVPGGE 136
>gi|392867674|gb|EAS29072.2| U6 snRNA-associated Sm-like protein LSm5 [Coccidioides immitis
RS]
Length = 84
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIKKNTRKPLG 71
P+ LI + + SK IW+ + D G ++GFD+Y+N+VL+D E + T+ P
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDREFSGTLLGFDDYVNMVLEDVTEFDYTGAQTKLP-- 60
Query: 72 RILLKGDNITLMMNTGK 88
+ILL G+N+ +++ G+
Sbjct: 61 KILLNGNNVCMLIPGGE 77
>gi|329765899|ref|ZP_08257464.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393795327|ref|ZP_10378691.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137605|gb|EGG41876.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 78
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 28 QIWLFEQKDLR-IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
QI L + K + I G ++GFD++MNL+LD +EE+ ++ N+ K LG I+++GDN+ ++
Sbjct: 16 QIVLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPVEGNS-KSLGTIVVRGDNVVMI 71
>gi|281341468|gb|EFB17052.1| hypothetical protein PANDA_006654 [Ailuropoda melanoleuca]
Length = 30
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 45 GFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
GFDEYMNLVLDDAEE+H K +RK LG+
Sbjct: 1 GFDEYMNLVLDDAEEIHSKTKSRKQLGK 28
>gi|224059779|ref|XP_002299989.1| predicted protein [Populus trichocarpa]
gi|224103927|ref|XP_002313247.1| predicted protein [Populus trichocarpa]
gi|118484238|gb|ABK93999.1| unknown [Populus trichocarpa]
gi|222847247|gb|EEE84794.1| predicted protein [Populus trichocarpa]
gi|222849655|gb|EEE87202.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA+T +++ P LI R + SK IW+ + D + G + GFD Y+N+VL+D E
Sbjct: 1 MANTNPSQLL--PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 54
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTGK 88
I R+ L +ILL G+NI +++ G
Sbjct: 55 EITAEGRRITKLDQILLNGNNIAILVPGGS 84
>gi|400596491|gb|EJP64262.1| putative U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Beauveria
bassiana ARSEF 2860]
Length = 82
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + + G ++GFD+Y+N+VL+D E N K L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGEKEFSGTLVGFDDYVNMVLEDVTEFDYTGNHTK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|193891015|gb|ACF28661.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 94
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI + + S+ IW+ + D + G + GFD+Y+N+VLDD E +K L
Sbjct: 12 PLALIDKCIGSR----IWVIMKGDKELVGTLRGFDDYVNMVLDDVREYTFTPEGKKVTQL 67
Query: 71 GRILLKGDNITLMMNTG 87
ILL G+NIT+M+ G
Sbjct: 68 ESILLNGNNITMMVPGG 84
>gi|346325284|gb|EGX94881.1| small nuclear ribonucleoprotein [Cordyceps militaris CM01]
Length = 83
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + + G ++GFD+Y+N+VL+D E L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGEKEFSGTLVGFDDYVNMVLEDVTEFSDYTGNHTKLPK 62
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 63 ILLNGNNICMLIPGGE 78
>gi|154303271|ref|XP_001552043.1| predicted protein [Botryotinia fuckeliana B05.10]
gi|347841641|emb|CCD56213.1| similar to U6 snRNA-associated Sm-like protein LSm5 [Botryotinia
fuckeliana]
Length = 84
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + SK IW+ + D G + GFD+Y+N+VL+D E + ++ L +
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFTGTLTGFDDYVNMVLEDVIEFDHQSGSQTKLPK 62
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+ I +++ G+
Sbjct: 63 ILLNGNGIAMLVPGGE 78
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P +L+ R + + I++ + +L I G++ FD +MN+VLD+AEE+ + LG
Sbjct: 5 RPFDLLNRVISQQVLIRL----KNNLNIRGKVTSFDAHMNIVLDNAEELDANGELKAKLG 60
Query: 72 RILLKGDNI 80
ILL+G NI
Sbjct: 61 TILLRGGNI 69
>gi|169601618|ref|XP_001794231.1| hypothetical protein SNOG_03677 [Phaeosphaeria nodorum SN15]
gi|160705976|gb|EAT88882.2| hypothetical protein SNOG_03677 [Phaeosphaeria nodorum SN15]
Length = 86
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S QIW+ G+++GFD+Y+N+VL++ E+ + K L +
Sbjct: 8 PLELIDKCVGS----QIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEIDPAEGNVK-LPK 62
Query: 73 ILLKGDNITLMMNTG 87
ILL G+NI +M+ G
Sbjct: 63 ILLNGNNICMMVPGG 77
>gi|388507376|gb|AFK41754.1| unknown [Lotus japonicus]
Length = 87
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MAS Q + P LI R + SK IW+ + D + G + GFD Y+N+VL+D E
Sbjct: 1 MASNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 53
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTGK 88
I R+ L +ILL G+NI +++ G
Sbjct: 54 EITAEGRRITKLDQILLNGNNIAILVPGGS 83
>gi|323507716|emb|CBQ67587.1| probable U6 snRNA-associated Sm-like protein LSm5 [Sporisorium
reilianum SRZ2]
Length = 103
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK---P 69
P+ LI + + S IW+ + D G ++GFD+Y+N+VL+D E + +K
Sbjct: 24 PLELIDKCIGS----SIWVIMKTDREFSGTLLGFDDYVNMVLEDVTEYETTPDGKKKKTK 79
Query: 70 LGRILLKGDNITLMM 84
LG+ LL G+NI +++
Sbjct: 80 LGQTLLNGNNICMLI 94
>gi|259484847|tpe|CBF81418.1| TPA: small nuclear ribonucleoprotein (LSM5), putative
(AFU_orthologue; AFUA_7G04280) [Aspergillus nidulans
FGSC A4]
Length = 129
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E K L +
Sbjct: 53 PLELIDKCVGSR----IWIIMKNDKEFSGTLLGFDDYVNMVLEDVTEFDYTGAQVK-LPK 107
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 108 ILLNGNNICMLIPGGE 123
>gi|358054346|dbj|GAA99272.1| hypothetical protein E5Q_05966 [Mixia osmundae IAM 14324]
Length = 83
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI + + S+ +W+ + + I G ++GFD+++N+VLDD E RK L
Sbjct: 7 PLELIDKCIGSR----LWVVLKSEREIVGTLLGFDDFVNMVLDDVTEYENTAQGRKATKL 62
Query: 71 GRILLKGDNITLMMNTGK 88
G+ LL G+NI +++ G
Sbjct: 63 GQTLLNGNNIAMLIPGGA 80
>gi|254166807|ref|ZP_04873661.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|254167437|ref|ZP_04874289.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|289596330|ref|YP_003483026.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623700|gb|EDY36263.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|197624417|gb|EDY36978.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|289534117|gb|ADD08464.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 72
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 8/75 (10%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRI-EGRIIGFDEYMNLVLDDAEEVHIKKNTRK 68
MT P+ ++ FL RI + L KD R+ EG+++G+D+YMN+VL D EE ++ TR+
Sbjct: 1 MTLPLKMLENFLNK--RISLLL---KDNRVLEGKLVGYDDYMNMVLMDTEE-KTEEMTRR 54
Query: 69 PLGRILLKGDNITLM 83
LG ++L+G+N+ M
Sbjct: 55 -LGTVILRGNNVVRM 68
>gi|242775508|ref|XP_002478658.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722277|gb|EED21695.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
stipitatus ATCC 10500]
Length = 105
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87
+IW+ + D G ++GFD+Y+N+VL+D E N K L +ILL G+N+ +++ G
Sbjct: 40 KIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYAGNQEK-LPKILLNGNNVCMLIPGG 98
Query: 88 K 88
+
Sbjct: 99 E 99
>gi|452837763|gb|EME39705.1| hypothetical protein DOTSEDRAFT_75376 [Dothistroma septosporum
NZE10]
Length = 80
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI R + S IW+ + D G ++GFD+++N+VL+D E H + L +
Sbjct: 7 PLELIDRCVGSP----IWVIMKGDKEFSGTLLGFDDFVNMVLEDVTE-HDYTGAKTKLPK 61
Query: 73 ILLKGDNITLMMNTG 87
ILL G+N+ +++ G
Sbjct: 62 ILLNGNNVCMLIPGG 76
>gi|410909464|ref|XP_003968210.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Takifugu rubripes]
gi|47225103|emb|CAF98730.1| unnamed protein product [Tetraodon nigroviridis]
Length = 88
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA+T +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E
Sbjct: 1 MAATNPSQLL--PLELVDKCIGS--RIHIVM--KTDKEIVGTLLGFDDFVNMVLEDVTEF 54
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTGK 88
+ R+ L +ILL G+NIT+++ G+
Sbjct: 55 EVTPEGRRITKLDQILLNGNNITMLIPGGE 84
>gi|326922224|ref|XP_003207351.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Meleagris gallopavo]
gi|363730150|ref|XP_418849.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Gallus
gallus]
Length = 91
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
AST +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E
Sbjct: 5 ASTNPSQLL--PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLMMNTGK 88
I R+ L +ILL G+NIT+++ G+
Sbjct: 59 ITPEGRRITKLDQILLNGNNITMLVPGGE 87
>gi|317034233|ref|XP_001396223.2| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus niger CBS
513.88]
gi|358373053|dbj|GAA89653.1| small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 83
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E + K L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKNDKEFAGTLLGFDDYVNMVLEDVTEFDYSGSQVK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+N+ +++ G+
Sbjct: 62 ILLNGNNVCMLIPGGE 77
>gi|443896082|dbj|GAC73426.1| U6 snRNA-associated Sm-like protein [Pseudozyma antarctica T-34]
Length = 103
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK---P 69
P+ LI + + S IW+ + + G ++GFD+Y+N+VL+D E ++ +K
Sbjct: 24 PLELIDKCIGS----SIWVIMKSEREFSGTLLGFDDYVNMVLEDVTEYETAQDGKKKKTK 79
Query: 70 LGRILLKGDNITLMM 84
LG+ LL G+NI +++
Sbjct: 80 LGQTLLNGNNICMLI 94
>gi|317139035|ref|XP_003189120.1| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus oryzae
RIB40]
Length = 102
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
+ST +++ P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E
Sbjct: 17 SSTMASQLL--PLELIDKCVGSR----IWVIMKNDKEFAGTLLGFDDYVNMVLEDVTEFD 70
Query: 62 IKKNTRKPLGRILLKGDNITLMMNTGK 88
K L +ILL G+N+ +++ G+
Sbjct: 71 YSGAQIK-LPKILLNGNNVCMLIPGGE 96
>gi|340344088|ref|ZP_08667220.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519229|gb|EGP92952.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 78
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 28 QIWLFEQKDLR-IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
QI L + K + I G ++GFD++MNL+LD +EE+ + N+ K LG I+++GDN+ ++
Sbjct: 16 QIVLIKLKGGKTIRGNLLGFDQHMNLLLDSSEEIPTEGNS-KSLGTIVVRGDNVVMI 71
>gi|156053688|ref|XP_001592770.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980]
gi|154703472|gb|EDO03211.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980 UF-70]
Length = 84
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + SK IW+ + D G + GFD+Y+N+VL+D E + + L +
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFTGTLTGFDDYVNMVLEDVIEFDHQSGNQTKLPK 62
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+ I +++ G+
Sbjct: 63 ILLNGNGIAMLVPGGE 78
>gi|70987204|ref|XP_749081.1| small nuclear ribonucleoprotein (LSM5) [Aspergillus fumigatus
Af293]
gi|66846711|gb|EAL87043.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus Af293]
gi|159123148|gb|EDP48268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E K L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGAQVK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|297792081|ref|XP_002863925.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
gi|297309760|gb|EFH40184.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
Length = 88
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MAS Q + P LI R + SK IW+ + D + G + GFD Y+N+VL+D E
Sbjct: 1 MASNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEY 53
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTGK 88
I R+ L +ILL G+NI +++ G
Sbjct: 54 EITAEGRRVTKLDQILLNGNNIAILVPGGS 83
>gi|413949490|gb|AFW82139.1| SAD1 [Zea mays]
Length = 137
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E R+ L
Sbjct: 60 PSELIDRCIGSK----IWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKL 115
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G
Sbjct: 116 DQILLNGNNIAILVPGGS 133
>gi|156937769|ref|YP_001435565.1| like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
gi|156566753|gb|ABU82158.1| Like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
Length = 73
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 21 LQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
+ ++A +I L + +D ++ GR+ FD ++N+VL+DAEEV +++ +PLG IL++GD +
Sbjct: 8 VMAEAIGKIVLVKLRDGKVRGRLKTFDMHLNIVLEDAEEV--REDQTRPLGTILIRGDGV 65
Query: 81 TLM 83
+
Sbjct: 66 VFV 68
>gi|168009596|ref|XP_001757491.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691185|gb|EDQ77548.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 86
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA +M P LI R + SK IW+ + D + G + GFD Y+N+VL+D E
Sbjct: 1 MAHNNPSHLM--PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 54
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTG 87
I R+ L +ILL G+NI +++ G
Sbjct: 55 EITSEGRRITKLEQILLNGNNIAILVPGG 83
>gi|390597684|gb|EIN07083.1| like-Sm ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 84
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI R + S+ IW+ + D G ++GFD+++N+VLDD E +K L
Sbjct: 7 PLELIDRCIGSR----IWVIMKNDREFTGTLLGFDDFVNMVLDDVTEFETTPEGKKKTQL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 AQTLLNGNNICMLI 76
>gi|348503608|ref|XP_003439356.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Oreochromis niloticus]
gi|348503610|ref|XP_003439357.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Oreochromis niloticus]
Length = 88
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M++T +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E
Sbjct: 1 MSATNPSQLL--PLELVDKCIGS--RIHIVM--KTDKEIVGTLLGFDDFVNMVLEDVTEF 54
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTGK 88
I R+ L +ILL G+NIT+++ G+
Sbjct: 55 EITPEGRRITKLDQILLNGNNITMLIPGGE 84
>gi|388852511|emb|CCF53913.1| probable U6 snRNA-associated Sm-like protein LSm5 [Ustilago
hordei]
Length = 103
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---KKNTRKP 69
P+ LI + + S IW+ + D G ++GFD+Y+N+VL+D E K +
Sbjct: 24 PLELIDKCIGS----SIWVIMKTDREFSGTLLGFDDYVNMVLEDVTEYETCLDGKKKKTE 79
Query: 70 LGRILLKGDNITLMM 84
LG+ LL G+NI +++
Sbjct: 80 LGQTLLNGNNICMLI 94
>gi|225433436|ref|XP_002285668.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Vitis vinifera]
gi|297741927|emb|CBI33362.3| unnamed protein product [Vitis vinifera]
Length = 87
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E I R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRITKL 65
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G
Sbjct: 66 DQILLNGNNIAILVPGGS 83
>gi|326472938|gb|EGD96947.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
gi|326477364|gb|EGE01374.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 83
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 14 INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRI 73
+ LI + + SK IW+ + D G ++GFD+Y+N+VL+D E K L +I
Sbjct: 7 VELIDKCVGSK----IWIVMKGDKEFCGTLLGFDDYVNMVLEDVTEFDYSGGQTK-LSKI 61
Query: 74 LLKGDNITLMMNTGK 88
LL G+N+ +++ G+
Sbjct: 62 LLNGNNVCMLIPGGE 76
>gi|449295361|gb|EMC91383.1| hypothetical protein BAUCODRAFT_127288 [Baudoinia compniacensis
UAMH 10762]
Length = 83
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI R + S IW+ + D G ++GFD+++N+VL+D E K L +
Sbjct: 7 PLELIDRCVGSP----IWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEYDYSGAQTK-LPK 61
Query: 73 ILLKGDNITLMMNTG 87
ILL G+NI +++ G
Sbjct: 62 ILLNGNNICMLIPGG 76
>gi|84998502|ref|XP_953972.1| (U6) snRNA-associated Sm-like protein [Theileria annulata]
gi|65304970|emb|CAI73295.1| (U6) snRNA-associated Sm-like protein, putative [Theileria
annulata]
Length = 90
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI + L SK IW+ + D I G + GFD+YMN+VL+D + + K L
Sbjct: 12 PLALIDKCLGSK----IWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTEL 67
Query: 71 GRILLKGDNITLMMNTGK 88
L+ G+N+ +++ GK
Sbjct: 68 NDALVNGNNVAMLVPGGK 85
>gi|296423698|ref|XP_002841390.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637628|emb|CAZ85581.1| unnamed protein product [Tuber melanosporum]
Length = 84
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ L+ + + S+ IW+ + D G ++GFD+Y+N+VL+D E K L +
Sbjct: 7 PLELVDKCVGSR----IWVVMKGDKEFSGTLVGFDDYVNMVLEDVTEYESTGEQVK-LKK 61
Query: 73 ILLKGDNITLMMNTG 87
ILL G+NI +++ G
Sbjct: 62 ILLNGNNICMLIPGG 76
>gi|356524941|ref|XP_003531086.1| PREDICTED: uncharacterized protein LOC100306359 [Glycine max]
gi|255628297|gb|ACU14493.1| unknown [Glycine max]
Length = 87
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E I R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 65
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G
Sbjct: 66 DQILLNGNNIAILVPGGS 83
>gi|170085071|ref|XP_001873759.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651311|gb|EDR15551.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 86
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI R + S+ IW+ + D G+++GFD+++N+VL+D E +K L
Sbjct: 7 PLELIDRCIGSR----IWVIMKSDREFTGKLLGFDDFVNMVLEDVTEYETTPQGKKTTQL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 AQTLLNGNNICMLI 76
>gi|449468622|ref|XP_004152020.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
gi|449522508|ref|XP_004168268.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
Length = 87
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA+ Q + P LI R + SK IW+ + D + G + GFD Y+N+VL+D E
Sbjct: 1 MATNPSQLL---PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEY 53
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTGK 88
I R+ L +ILL G+NI +++ G
Sbjct: 54 EITAEGRRITKLDQILLNGNNIAILVPGGS 83
>gi|121711305|ref|XP_001273268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
gi|119401419|gb|EAW11842.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
Length = 83
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E K L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGAQIK-LNK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+N+ +++ G+
Sbjct: 62 ILLNGNNVCMLIPGGE 77
>gi|451848655|gb|EMD61960.1| hypothetical protein COCSADRAFT_147219 [Cochliobolus sativus
ND90Pr]
gi|451998469|gb|EMD90933.1| hypothetical protein COCHEDRAFT_1021722 [Cochliobolus
heterostrophus C5]
Length = 86
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IKKNTRKPLG 71
P+ LI + + S QIW+ G+++GFD+Y+N+VL++ E+ + N + P
Sbjct: 8 PLELIDKCVGS----QIWVIMNGGKEFTGKLVGFDDYVNMVLENVTEIDPAEGNVQLP-- 61
Query: 72 RILLKGDNITLMMNTG 87
+ILL G+NI +M+ G
Sbjct: 62 KILLNGNNICMMVPGG 77
>gi|387915912|gb|AFK11565.1| U6 snRNA-associated Sm-like protein LSm5 [Callorhinchus milii]
Length = 90
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA T P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E
Sbjct: 1 MAVTVTNPSQLLPLELVDKCIGS--RIHIVM--KNDKEIVGTLLGFDDFVNMVLEDVTEF 56
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTGK 88
I R+ L +ILL G+NIT+++ G+
Sbjct: 57 EITPEGRRITKLDQILLNGNNITMLIPGGE 86
>gi|115463665|ref|NP_001055432.1| Os05g0389300 [Oryza sativa Japonica Group]
gi|357133866|ref|XP_003568543.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Brachypodium distachyon]
gi|54287604|gb|AAV31348.1| putative snRNA associated protein [Oryza sativa Japonica Group]
gi|113578983|dbj|BAF17346.1| Os05g0389300 [Oryza sativa Japonica Group]
gi|215765216|dbj|BAG86913.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196723|gb|EEC79150.1| hypothetical protein OsI_19819 [Oryza sativa Indica Group]
gi|222622229|gb|EEE56361.1| hypothetical protein OsJ_05491 [Oryza sativa Japonica Group]
Length = 89
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E R+ L
Sbjct: 11 PSELIDRCIGSK----IWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKL 66
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G
Sbjct: 67 DQILLNGNNIAILVPGGS 84
>gi|48477793|ref|YP_023499.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
gi|48430441|gb|AAT43306.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 71
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 16 LIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILL 75
L + L+ ++ L + + +EG + G+DEYMN+ LDDAEE T++ LG +++
Sbjct: 4 LPMKMLEESLNKKVSLLLKDNRVLEGTLAGYDEYMNMTLDDAEE---SGETQRKLGTVVI 60
Query: 76 KGDNI 80
+G N+
Sbjct: 61 RGSNV 65
>gi|71033371|ref|XP_766327.1| U6 small nuclear ribonucleoprotein E [Theileria parva strain
Muguga]
gi|68353284|gb|EAN34044.1| U6 small nuclear ribonucleoprotein E, putative [Theileria parva]
Length = 90
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI + L SK IW+ + D I G + GFD+YMN+VL+D + + K L
Sbjct: 12 PLALIDKCLGSK----IWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSPDGVKTTEL 67
Query: 71 GRILLKGDNITLMMNTGK 88
L+ G+N+ +++ GK
Sbjct: 68 NDALVNGNNVAMLVPGGK 85
>gi|17560310|ref|NP_506870.1| Protein LSM-5 [Caenorhabditis elegans]
gi|3876465|emb|CAB03013.1| Protein LSM-5 [Caenorhabditis elegans]
Length = 91
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
ST P+ LI + + SK IW+ + D I G + GFD+Y+N+VL+D E
Sbjct: 3 TSTSTNPNTLLPLELIDKCIGSK----IWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLMMNTGK 88
+ ++ L ILL G++IT+++ G+
Sbjct: 59 NTADGKRMTKLDTILLNGNHITMLVPGGE 87
>gi|6912488|ref|NP_036454.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Homo sapiens]
gi|13384942|ref|NP_079796.1| U6 snRNA-associated Sm-like protein LSm5 [Mus musculus]
gi|114053307|ref|NP_001040018.1| U6 snRNA-associated Sm-like protein LSm5 [Bos taurus]
gi|157822947|ref|NP_001100759.1| U6 snRNA-associated Sm-like protein LSm5 [Rattus norvegicus]
gi|197101673|ref|NP_001126628.1| U6 snRNA-associated Sm-like protein LSm5 [Pongo abelii]
gi|383873354|ref|NP_001244745.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca mulatta]
gi|55628382|ref|XP_519030.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 3
[Pan troglodytes]
gi|73976577|ref|XP_854477.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Canis lupus
familiaris]
gi|149705702|ref|XP_001500867.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Equus
caballus]
gi|291394638|ref|XP_002713789.1| PREDICTED: LSM5 homolog, U6 small nuclear RNA associated
[Oryctolagus cuniculus]
gi|296209016|ref|XP_002751358.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Callithrix jacchus]
gi|301772952|ref|XP_002921890.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Ailuropoda melanoleuca]
gi|332242762|ref|XP_003270553.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Nomascus leucogenys]
gi|335305486|ref|XP_003360223.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Sus
scrofa]
gi|344270397|ref|XP_003407031.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Loxodonta africana]
gi|348568734|ref|XP_003470153.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cavia
porcellus]
gi|395831025|ref|XP_003788612.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Otolemur garnettii]
gi|397527112|ref|XP_003833447.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Pan
paniscus]
gi|402863784|ref|XP_003896179.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Papio anubis]
gi|403278350|ref|XP_003930776.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Saimiri
boliviensis boliviensis]
gi|407262510|ref|XP_003946397.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Mus
musculus]
gi|410952602|ref|XP_003982968.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Felis catus]
gi|426227726|ref|XP_004007967.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Ovis aries]
gi|426355879|ref|XP_004045331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Gorilla gorilla gorilla]
gi|426355881|ref|XP_004045332.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Gorilla gorilla gorilla]
gi|10720081|sp|Q9Y4Y9.3|LSM5_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|52783752|sp|P62322.2|LSM5_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|75054789|sp|Q5R628.3|LSM5_PONAB RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|116256439|sp|Q2HJH0.3|LSM5_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|5919151|gb|AAD56229.1|AF182291_1 U6 snRNA-associated Sm-like protein LSm5 [Homo sapiens]
gi|5262860|emb|CAB45868.1| Lsm5 protein [Homo sapiens]
gi|12844520|dbj|BAB26394.1| unnamed protein product [Mus musculus]
gi|12847199|dbj|BAB27475.1| unnamed protein product [Mus musculus]
gi|13543565|gb|AAH05938.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|38512042|gb|AAH61085.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|51105856|gb|EAL24440.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|55732167|emb|CAH92788.1| hypothetical protein [Pongo abelii]
gi|55930921|gb|AAH48459.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|88682880|gb|AAI05405.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119614397|gb|EAW93991.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
gi|124376122|gb|AAI32627.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|124376508|gb|AAI32629.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|148672763|gb|EDL04710.1| mCG13108, isoform CRA_a [Mus musculus]
gi|149033255|gb|EDL88056.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_c [Rattus norvegicus]
gi|208966684|dbj|BAG73356.1| LSM5 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296488471|tpg|DAA30584.1| TPA: U6 snRNA-associated Sm-like protein LSm5 [Bos taurus]
gi|312153290|gb|ADQ33157.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|355560708|gb|EHH17394.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca mulatta]
gi|380811262|gb|AFE77506.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|383417167|gb|AFH31797.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|384941550|gb|AFI34380.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|410223678|gb|JAA09058.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410255044|gb|JAA15489.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410354065|gb|JAA43636.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395572|gb|JAA44840.1| Putative u6 snrna-associated sm-like protein [Desmodus rotundus]
gi|440911522|gb|ELR61182.1| U6 snRNA-associated Sm-like protein LSm5 [Bos grunniens mutus]
Length = 91
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A+T +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E
Sbjct: 5 ATTNPSQLL--PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLMMNTGK 88
I R+ L +ILL G+NIT+++ G+
Sbjct: 59 ITPEGRRITKLDQILLNGNNITMLVPGGE 87
>gi|226504910|ref|NP_001152573.1| SAD1 [Zea mays]
gi|226528898|ref|NP_001149693.1| SAD1 [Zea mays]
gi|242090409|ref|XP_002441037.1| hypothetical protein SORBIDRAFT_09g019200 [Sorghum bicolor]
gi|194697624|gb|ACF82896.1| unknown [Zea mays]
gi|195606068|gb|ACG24864.1| SAD1 [Zea mays]
gi|195609070|gb|ACG26365.1| SAD1 [Zea mays]
gi|195629524|gb|ACG36403.1| SAD1 [Zea mays]
gi|195638676|gb|ACG38806.1| SAD1 [Zea mays]
gi|195657645|gb|ACG48290.1| SAD1 [Zea mays]
gi|241946322|gb|EES19467.1| hypothetical protein SORBIDRAFT_09g019200 [Sorghum bicolor]
gi|413945216|gb|AFW77865.1| SAD1 isoform 1 [Zea mays]
gi|413945217|gb|AFW77866.1| SAD1 isoform 2 [Zea mays]
gi|413949491|gb|AFW82140.1| SAD1 [Zea mays]
Length = 88
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E R+ L
Sbjct: 11 PSELIDRCIGSK----IWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKL 66
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G
Sbjct: 67 DQILLNGNNIAILVPGGS 84
>gi|345567853|gb|EGX50755.1| hypothetical protein AOL_s00054g841 [Arthrobotrys oligospora ATCC
24927]
Length = 81
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ L+ + + SK IW+ + + G ++GFD+Y+N+VL+D E + + L +
Sbjct: 7 PLELVDKCVGSK----IWVVMKSEKEFSGTLVGFDDYVNMVLEDVTEYDAGEQIK--LKK 60
Query: 73 ILLKGDNITLMMNTG 87
ILL G+NI +++ G
Sbjct: 61 ILLNGNNICMLIPGG 75
>gi|388498294|gb|AFK37213.1| unknown [Medicago truncatula]
Length = 87
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E I R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 65
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G
Sbjct: 66 DQILLNGNNIAILVPGGS 83
>gi|302697739|ref|XP_003038548.1| hypothetical protein SCHCODRAFT_13369 [Schizophyllum commune
H4-8]
gi|300112245|gb|EFJ03646.1| hypothetical protein SCHCODRAFT_13369 [Schizophyllum commune
H4-8]
Length = 84
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI R + S+ IW+ + D G ++GFD+++N+VL+D E RK L
Sbjct: 7 PLELIDRCIGSR----IWVVMKNDHEFTGTLLGFDDFVNMVLEDVTEYETTAAGRKKTQL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 AQTLLNGNNICILI 76
>gi|238482069|ref|XP_002372273.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
gi|220700323|gb|EED56661.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
Length = 83
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E K L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKNDKEFAGTLLGFDDYVNMVLEDVTEFDYSGAQIK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+N+ +++ G+
Sbjct: 62 ILLNGNNVCMLIPGGE 77
>gi|197129592|gb|ACH46090.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
Length = 91
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D +I G ++GFD+++N+VL+D E I R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KSDKQIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 70 DQILLNGNNITMLVPGGE 87
>gi|116779179|gb|ABK21171.1| unknown [Picea sitchensis]
gi|116779217|gb|ABK21184.1| unknown [Picea sitchensis]
gi|224285498|gb|ACN40469.1| unknown [Picea sitchensis]
Length = 85
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E I R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRITKL 65
Query: 71 GRILLKGDNITLMMNTG 87
+ILL G+NI +++ G
Sbjct: 66 DQILLNGNNIAILVPGG 82
>gi|346470761|gb|AEO35225.1| hypothetical protein [Amblyomma maculatum]
Length = 90
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+ + V P+ LI + + SK I + + D I G ++GFD+++N+VL+D E
Sbjct: 1 MSLSAVNPSSLLPLELIDKCIGSK----IHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEY 56
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTG 87
R+ L +ILL G+NIT+M+ G
Sbjct: 57 ESTPEGRRITKLDQILLNGNNITMMVPGG 85
>gi|302421256|ref|XP_003008458.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261351604|gb|EEY14032.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|346974640|gb|EGY18092.1| hypothetical protein VDAG_08426 [Verticillium dahliae VdLs.17]
Length = 80
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G + GFD+Y+N+VL+D E K L +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGTLTGFDDYVNMVLEDVTEFDYSGQHVK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|392341168|ref|XP_003754272.1| PREDICTED: hypothetical protein LOC685221 [Rattus norvegicus]
gi|392348953|ref|XP_002729703.2| PREDICTED: hypothetical protein LOC685221 [Rattus norvegicus]
Length = 94
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLR-IEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--P 69
P+ L+ + + S RI I + K+++ I G ++GFD+++N+VL+D E I R+
Sbjct: 14 PLELVDKCIGS--RIPIVMKSDKEIKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITK 71
Query: 70 LGRILLKGDNITLMMNTGK 88
L +ILL G+NIT+++ G+
Sbjct: 72 LDQILLNGNNITMLVPGGE 90
>gi|356512167|ref|XP_003524792.1| PREDICTED: uncharacterized protein LOC100527929 [Glycine max]
gi|255633598|gb|ACU17158.1| unknown [Glycine max]
Length = 87
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK IW+ + D + G + GFD Y N+VL+D E I R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKL 65
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G
Sbjct: 66 DQILLNGNNIAILVPGGS 83
>gi|452077675|gb|AGF93625.1| like-Sm ribonucleoprotein, eukaryotic and archaea-type, core
[uncultured organism]
Length = 73
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK 68
++ +P N FL ++ L + ++G +IGFD++MNLVL+D EE K+++R+
Sbjct: 2 VIMKPSN----FLNENLDTEVELLLKDGSILKGTLIGFDDHMNLVLEDTEEK--KEDSRR 55
Query: 69 PLGRILLKGDNITLM 83
+G I+L+G+N+ +
Sbjct: 56 RIGTIILRGNNVVTL 70
>gi|299471840|emb|CBN77010.1| Sm-like protein LSm5 [Ectocarpus siliculosus]
Length = 85
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK---P 69
P+ LI + + S+ +W+ + D + G + GFD+Y+N+VLDD E + + K
Sbjct: 7 PLELIDKCIGSR----LWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQ 62
Query: 70 LGRILLKGDNITLMMNTGK 88
L +ILL G+N+ +++ G
Sbjct: 63 LDQILLNGNNVAMLVPGGS 81
>gi|350539912|ref|NP_001232310.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129593|gb|ACH46091.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129594|gb|ACH46092.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129595|gb|ACH46093.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129831|gb|ACH46329.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129908|gb|ACH46406.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
Length = 91
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E I R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 70 DQILLNGNNITMLVPGGE 87
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
+ L+ Q+ + + ++ + G++ FD+++N+VLDDAEE+ +TRK LG ++++G
Sbjct: 6 HKILEENLGKQVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRK-LGTVVIRG 64
Query: 78 DNITLMMNTGK 88
D + L+ G+
Sbjct: 65 DTVVLISPLGE 75
>gi|225681342|gb|EEH19626.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 130
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIKKNTRKPLG 71
P+ LI + + SK IW+ + D G ++GFD+Y+N+VL+D E + T+ P
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYTGAQTKLP-- 60
Query: 72 RILLKGDNITLM 83
+ILL G+N+ ++
Sbjct: 61 KILLNGNNVCML 72
>gi|196001101|ref|XP_002110418.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190586369|gb|EDV26422.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 84
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI + + S RI I + + D + G ++GFD+++N+VL+D E + R+ L
Sbjct: 8 PLELIDKCIGS--RIHIIM--KSDKEVVGTLLGFDDFVNMVLEDVTEYETTADGRRVTKL 63
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+M+ G+
Sbjct: 64 DQILLNGNNITMMVPGGE 81
>gi|313586491|gb|ADR71256.1| U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
Length = 87
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E + R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEVTAEGRRITKL 65
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G
Sbjct: 66 DQILLNGNNIAILVPGGS 83
>gi|378725612|gb|EHY52071.1| U6 snRNA-associated Sm-like protein LSm5 [Exophiala dermatitidis
NIH/UT8656]
Length = 84
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIKKNTRKPLG 71
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E + T+ P
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKDFAGTLLGFDDYVNMVLEDVIEFDYTGAQTKLP-- 60
Query: 72 RILLKGDNITLMMNTGK 88
+ILL G+NI +++ G+
Sbjct: 61 KILLNGNNICMLIPGGE 77
>gi|147901169|ref|NP_001087187.1| U6 snRNA-associated Sm-like protein LSm5 [Xenopus laevis]
gi|51873770|gb|AAH78466.1| MGC85219 protein [Xenopus laevis]
Length = 91
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E I R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 70 DQILLNGNNITMLVPGGE 87
>gi|193582435|ref|XP_001943900.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like
[Acyrthosiphon pisum]
Length = 217
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
P++ I F +K R+++++ +R EG II FD++ NLV+DD +EV +KN K L
Sbjct: 108 PLSRIALFCYAKKRVKVYIRSAVSVRGHCEGYIIAFDKHWNLVMDDVDEVWTRKNKYKSL 167
Query: 71 G 71
Sbjct: 168 A 168
>gi|427785997|gb|JAA58450.1| Putative u6 snrna-associated sm-like protein [Rhipicephalus
pulchellus]
Length = 90
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI + + SK I + + D I G ++GFD+++N+VL+D E R+ L
Sbjct: 13 PLELIDKCIGSK----IHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEYESTPEGRRITKL 68
Query: 71 GRILLKGDNITLMMNTG 87
+ILL G+NIT+M+ G
Sbjct: 69 DQILLNGNNITMMVPGG 85
>gi|392597490|gb|EIW86812.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 84
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI R + SK IW+ + D G ++GFD+++N+VL+D E I K L
Sbjct: 7 PLELIDRCIGSK----IWVVMKGDREFSGTLLGFDDFVNMVLEDVTEFEITAEGIKQTKL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 SQTLLNGNNICMLI 76
>gi|213982795|ref|NP_001135569.1| U6 snRNA-associated Sm-like protein LSm5 [Xenopus (Silurana)
tropicalis]
gi|195539827|gb|AAI68072.1| Unknown (protein for MGC:185877) [Xenopus (Silurana) tropicalis]
Length = 91
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E I R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 70 DQILLNGNNITMLVPGGE 87
>gi|350854337|emb|CCD58316.1| unnamed protein product [Schistosoma mansoni]
Length = 53
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 44 IGFDEYMNLVLDDAEEVHIKKNTRKPLGRIL 74
IGFDEYMNLVL DA E H+K +KPLG +
Sbjct: 16 IGFDEYMNLVLADACERHMKSGAKKPLGETI 46
>gi|398394357|ref|XP_003850637.1| hypothetical protein MYCGRDRAFT_81468 [Zymoseptoria tritici
IPO323]
gi|339470516|gb|EGP85613.1| hypothetical protein MYCGRDRAFT_81468 [Zymoseptoria tritici
IPO323]
Length = 81
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI R + S IW+ + D G ++GFD+++N+VL+D E K L +
Sbjct: 7 PLELIDRCVGSP----IWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEYDYSGAQTK-LPK 61
Query: 73 ILLKGDNITLMMNTG 87
ILL G+N+ +++ G
Sbjct: 62 ILLNGNNVAMLIPGG 76
>gi|134105981|ref|XP_778001.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260704|gb|EAL23354.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 216
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN--TRKPL 70
P+ L+ R + S IW+ + + G ++GFD+Y+N+VL D +E + + T L
Sbjct: 7 PLELVDRCIGSP----IWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETDL 62
Query: 71 GRILLKGDNITLMMNT 86
G LL G+NI ++ T
Sbjct: 63 GDTLLNGNNIAMVRTT 78
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 36 DLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 86
D+ + G++ FD+++NLVL++AEE+ +TRK LG ++++GDN+ L+ T
Sbjct: 24 DIVVRGKLKSFDQHLNLVLEEAEEIKSDGSTRK-LGTLVIRGDNVVLISPT 73
>gi|317420150|emb|CBN82186.1| U6 snRNA-associated Sm-like protein LSm5 [Dicentrarchus labrax]
Length = 91
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E I R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KTDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 70 DQILLNGNNITMLIPGGE 87
>gi|268561698|ref|XP_002638393.1| C. briggsae CBR-LSM-5 protein [Caenorhabditis briggsae]
gi|341889312|gb|EGT45247.1| hypothetical protein CAEBREN_08263 [Caenorhabditis brenneri]
gi|341889389|gb|EGT45324.1| hypothetical protein CAEBREN_18101 [Caenorhabditis brenneri]
Length = 91
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
ST P+ LI + + SK IW+ + D I G + GFD+Y+N+VL+D E
Sbjct: 3 TSTSTNPNTLLPLELIDKCIGSK----IWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLMMNTGK 88
++ L ILL G++IT+++ G+
Sbjct: 59 NTAEGKRMTKLDTILLNGNHITMLVPGGE 87
>gi|118575248|ref|YP_874991.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118193769|gb|ABK76687.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 78
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
I G ++GFD++MNL+L+ +EE+ ++ TR LG I+++GDN+ ++
Sbjct: 28 IRGNLLGFDQHMNLLLESSEEIPVEGETRT-LGTIVVRGDNVVII 71
>gi|302771065|ref|XP_002968951.1| hypothetical protein SELMODRAFT_90525 [Selaginella
moellendorffii]
gi|302816639|ref|XP_002989998.1| hypothetical protein SELMODRAFT_130618 [Selaginella
moellendorffii]
gi|300142309|gb|EFJ09011.1| hypothetical protein SELMODRAFT_130618 [Selaginella
moellendorffii]
gi|300163456|gb|EFJ30067.1| hypothetical protein SELMODRAFT_90525 [Selaginella
moellendorffii]
Length = 85
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E I + ++ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITPDGKRITKL 65
Query: 71 GRILLKGDNITLMMNTG 87
+ILL G+NI +++ G
Sbjct: 66 DQILLNGNNIAILVPGG 82
>gi|229366148|gb|ACQ58054.1| U6 snRNA-associated Sm-like protein LSm5 [Anoplopoma fimbria]
Length = 91
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E I R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KTDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 70 DQILLNGNNITMLIPGGE 87
>gi|110739170|dbj|BAF01501.1| Sm-like protein [Arabidopsis thaliana]
Length = 88
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E I R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G
Sbjct: 66 DQILLNGNNIAILVPGGS 83
>gi|15239727|ref|NP_199698.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|9758886|dbj|BAB09440.1| U6 snRNA-associated Sm-like protein-like [Arabidopsis thaliana]
gi|16554971|gb|AAK61592.1| Sm-like protein [Arabidopsis thaliana]
gi|106879147|gb|ABF82603.1| At5g48870 [Arabidopsis thaliana]
gi|332008352|gb|AED95735.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|386305005|gb|AFJ05005.1| hypothetical protein [Arabidopsis thaliana]
Length = 88
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E I R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G
Sbjct: 66 DQILLNGNNIAILVPGGS 83
>gi|309241419|ref|XP_003115877.1| CRE-LSM-5 protein [Caenorhabditis remanei]
gi|308256412|gb|EFP00365.1| CRE-LSM-5 protein [Caenorhabditis remanei]
Length = 91
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
ST P+ LI + + SK IW+ + D I G + GFD+Y+N+VL+D E
Sbjct: 3 TSTSTNPNTLLPLELIDKCIGSK----IWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLMMNTGK 88
++ L ILL G++IT+++ G+
Sbjct: 59 NTAEGKRMTKLDTILLNGNHITMLVPGGE 87
>gi|154426284|ref|NP_001093908.1| U6 snRNA-associated Sm-like protein LSm5 [Danio rerio]
gi|152012711|gb|AAI50415.1| Zgc:171959 protein [Danio rerio]
Length = 91
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E I R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 70 DQILLNGNNITMLIPGGE 87
>gi|313213177|emb|CBY37031.1| unnamed protein product [Oikopleura dioica]
gi|313226437|emb|CBY21582.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFDE++N+VL+D E + +K L
Sbjct: 7 PLELVDKCIGS--RIHIIM--RNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKL 62
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 63 EQILLNGNNITMLVPGGE 80
>gi|261245080|ref|NP_001140132.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221220780|gb|ACM09051.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221222120|gb|ACM09721.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|225715330|gb|ACO13511.1| U6 snRNA-associated Sm-like protein LSm5 [Esox lucius]
Length = 91
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E I R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 70 DQILLNGNNITMLIPGGE 87
>gi|149025174|gb|EDL81541.1| rCG64141 [Rattus norvegicus]
Length = 94
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDL-RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--P 69
P+ L+ + + S RI I + K++ I G ++GFD+++N+VL+D E I R+
Sbjct: 14 PLELVDKCIGS--RIPIVMKSDKEIVEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITK 71
Query: 70 LGRILLKGDNITLMMNTGK 88
L +ILL G+NIT+++ G+
Sbjct: 72 LDQILLNGNNITMLVPGGE 90
>gi|442748493|gb|JAA66406.1| Putative u6 snrna-associated sm-like protein [Ixodes ricinus]
Length = 90
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI + + SK I + + D I G ++GFD+++N+VL+D E R+ L
Sbjct: 13 PLELIDKCIGSK----IHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEYESTPEGRRITKL 68
Query: 71 GRILLKGDNITLMMNTG 87
+ILL G+NIT+M+ G
Sbjct: 69 DQILLNGNNITMMVPGG 85
>gi|193890979|gb|ACF28643.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 82
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMN 85
+IW+ + D + G + GFD+Y+N+VLDD E +K L ILL G+NIT+M+
Sbjct: 11 RIWVIMKGDKELVGTLRGFDDYVNMVLDDVREYTFTPEGKKVTQLESILLNGNNITMMVP 70
Query: 86 TG 87
G
Sbjct: 71 GG 72
>gi|58258057|ref|XP_566441.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57222578|gb|AAW40622.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 216
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MAST + P+ L+ R + S IW+ + + G ++GFD+Y+N+VL D +E
Sbjct: 1 MASTIL------PLELVDRCIGSP----IWVLMKNEREFTGTLMGFDDYVNMVLKDVKEY 50
Query: 61 HIKKN--TRKPLGRILLKGDNITLMMNT 86
+ + T LG LL G+NI ++ T
Sbjct: 51 EVTASGITETDLGDTLLNGNNIAMVRTT 78
>gi|432929710|ref|XP_004081239.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Oryzias
latipes]
Length = 91
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E I R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KTDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 70 DQILLNGNNITMLIPGGE 87
>gi|336376883|gb|EGO05218.1| hypothetical protein SERLA73DRAFT_174233 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389815|gb|EGO30958.1| hypothetical protein SERLADRAFT_455383 [Serpula lacrymans var.
lacrymans S7.9]
Length = 85
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI R + S+ IW+ + D G ++GFD+++N+VL+D E +K L
Sbjct: 7 PLELIDRCIGSR----IWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYETTPQGKKKTKL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 AQTLLNGNNICMLI 76
>gi|46124883|ref|XP_386995.1| hypothetical protein FG06819.1 [Gibberella zeae PH-1]
Length = 89
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKD------LRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
P+ LI + + S+ IW+ + D G ++GFD+Y+N+VL+D E N
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKGKMSLAEFSGTLVGFDDYVNMVLEDVTEFDYSGNH 62
Query: 67 RKPLGRILLKGDNITLMMNTGK 88
K L +ILL G+NI +++ G+
Sbjct: 63 TK-LPKILLNGNNICMLIPGGE 83
>gi|407464058|ref|YP_006774940.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047246|gb|AFS81998.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 78
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
I G ++GFD++MNL+LD +EE+ + ++ K LG I+++GDN+ ++
Sbjct: 28 IRGNLLGFDQHMNLLLDSSEEIPAEGDS-KSLGSIVVRGDNVVMI 71
>gi|409083153|gb|EKM83510.1| hypothetical protein AGABI1DRAFT_110162 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 84
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI R + SK IW+ + D G ++GFD+++N+VL+D E +K L
Sbjct: 7 PLELIDRCIGSK----IWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKETKL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 AQTLLNGNNICMLI 76
>gi|321250537|ref|XP_003191841.1| hypothetical protein CGB_B0090W [Cryptococcus gattii WM276]
gi|317458309|gb|ADV20054.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 122
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN--TRKPL 70
P+ L+ R + S IW+ + + G ++GFD+Y+N+VL D +E + + T L
Sbjct: 7 PLELVDRCIGSP----IWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETDL 62
Query: 71 GRILLKGDNITL 82
G LL G+NI +
Sbjct: 63 GDTLLNGNNIAM 74
>gi|169843758|ref|XP_001828604.1| hypothetical protein CC1G_10275 [Coprinopsis cinerea
okayama7#130]
gi|116510312|gb|EAU93207.1| hypothetical protein CC1G_10275 [Coprinopsis cinerea
okayama7#130]
Length = 84
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI R + SK IW+ + D G ++GFD+++N+VL+D E RK L
Sbjct: 7 PLELIDRCIGSK----IWVVMKNDREFTGTLLGFDDFVNMVLEDVTEFENTPQGRKKTKL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 TQTLLNGNNICMLI 76
>gi|363753790|ref|XP_003647111.1| hypothetical protein Ecym_5554 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890747|gb|AET40294.1| hypothetical protein Ecym_5554 [Eremothecium cymbalariae
DBVPG#7215]
Length = 82
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 29 IWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IKKNTRKPLGRILLKGDNITLMMNTG 87
IW+ + G ++GFD+++N+V++D E + K ++ G++LL G+NIT+++ G
Sbjct: 20 IWILLTSNREFTGTLVGFDDFVNVVIEDVIEYEGVDKEVKRHHGKMLLSGNNITMLVPGG 79
Query: 88 K 88
K
Sbjct: 80 K 80
>gi|367001532|ref|XP_003685501.1| hypothetical protein TPHA_0D04330 [Tetrapisispora phaffii CBS
4417]
gi|357523799|emb|CCE63067.1| hypothetical protein TPHA_0D04330 [Tetrapisispora phaffii CBS
4417]
Length = 86
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN-----TRKPLGRILLKGDNITL 82
+W+ Q + G +IGFD+++N++++DA E + N K GR+LL G+NI +
Sbjct: 20 NVWIILQSNREFTGTLIGFDDFVNVIIEDAVEYITRNNDDDDIVMKHHGRMLLSGNNIAM 79
Query: 83 MMNTGK 88
++ GK
Sbjct: 80 LVPGGK 85
>gi|440632020|gb|ELR01939.1| hypothetical protein GMDG_05112 [Geomyces destructans 20631-21]
Length = 227
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 14 INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRI 73
I LI R + SK IW+ + D G + GFD+Y+N+VL+D E T K + +I
Sbjct: 139 IELIDRCVGSK----IWVVMKTDKEFTGTLTGFDDYVNMVLEDVTEFDYTGATTK-MEKI 193
Query: 74 LLKGDNITL 82
LL G+NI +
Sbjct: 194 LLNGNNICM 202
>gi|428180050|gb|EKX48919.1| hypothetical protein GUITHDRAFT_93594 [Guillardia theta CCMP2712]
Length = 94
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT---RKP 69
P+ LI R + S+ IW+ + D G + GFD+Y+N+VL+D E + +
Sbjct: 11 PLELIDRCIGSR----IWIILKGDKEFVGTLQGFDDYVNMVLEDVTEFEVNPDGGYRETK 66
Query: 70 LGRILLKGDNITLMMNTGK 88
L +ILL G+NI +++ G+
Sbjct: 67 LDQILLNGNNICMLVPGGE 85
>gi|426201795|gb|EKV51718.1| hypothetical protein AGABI2DRAFT_189942 [Agaricus bisporus var.
bisporus H97]
Length = 84
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI R + SK IW+ + D G ++GFD+++N+VL+D E +K L
Sbjct: 7 PLELIDRCIGSK----IWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKETKL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 SQTLLNGNNICMLI 76
>gi|313240518|emb|CBY32850.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFDE++N+VL+D E + +K L
Sbjct: 7 PLELVDKCIGS--RIHIIM--RNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKL 62
Query: 71 GRILLKGDNITLMMNTG 87
+ILL G+NIT+++ G
Sbjct: 63 EQILLNGNNITMLVPGG 79
>gi|126336758|ref|XP_001371876.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Monodelphis domestica]
Length = 166
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A+T +++ P+ L+ + + S+ I + + D I G ++GFD+++N+VL+D E
Sbjct: 5 ATTNPSQLL--PLELVDKCIGSRIHIVM----KSDKEIVGTLLGFDDFVNMVLEDVTEFE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLM 83
I R+ L +ILL G+NIT+M
Sbjct: 59 ITPEGRRITKLDQILLNGNNITMM 82
>gi|16081975|ref|NP_394385.1| hypothetical protein Ta0927 [Thermoplasma acidophilum DSM 1728]
gi|10640204|emb|CAC12056.1| hypothetical protein [Thermoplasma acidophilum]
Length = 67
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
+ L+ ++ L + + +EG + GFDEYMN+VLDD +E +N + LG ++++G
Sbjct: 1 MKMLEESVNKRVSLLLKDNRVLEGVLTGFDEYMNMVLDDVDENS--ENVSRKLGTVVVRG 58
Query: 78 DNIT 81
N+
Sbjct: 59 SNVV 62
>gi|389751535|gb|EIM92608.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 85
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI R + S+ IW+ + + G ++GFD+++N+VL+D E I RK L
Sbjct: 7 PLELIDRCIGSR----IWVIMKNEREFTGTLLGFDDFVNMVLEDVTEFEITSAGRKKTAL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 RQTLLNGNNICMLV 76
>gi|320592276|gb|EFX04715.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 80
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + + G ++GFD+Y+N+VL++ E K + +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGEREFSGTLVGFDDYVNMVLEEVTEFDYSGGQTK-MSK 61
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+NI +++ G+
Sbjct: 62 ILLNGNNICMLIPGGE 77
>gi|395334578|gb|EJF66954.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 85
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI R + S+ IW+ + D G ++GFD+++N+VL+D E +K L
Sbjct: 7 PLELIDRCIGSR----IWVIMKNDREFTGTLLGFDDFVNMVLEDVTEYETTPQGKKKTTL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 NQTLLNGNNICMLI 76
>gi|391338472|ref|XP_003743582.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Metaseiulus occidentalis]
Length = 83
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI + + S RI I + K+L G ++GFD+Y+N+VL+D E + R+ L
Sbjct: 6 PLELIDKCIGS--RIHIIMKNDKELV--GTLLGFDDYVNMVLEDVTEYENSSDGRRVTKL 61
Query: 71 GRILLKGDNITLMMNTG 87
+I+L G NIT+M+ G
Sbjct: 62 DQIILNGSNITMMVPGG 78
>gi|354485537|ref|XP_003504940.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Cricetulus griseus]
Length = 140
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITL 82
+RI I + + D I G ++GFD+++N+VL+D E I R+ L +ILL G+NIT+
Sbjct: 73 SRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITM 130
Query: 83 MMNTGK 88
++ G+
Sbjct: 131 LVPGGE 136
>gi|386875009|ref|ZP_10117213.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807169|gb|EIJ66584.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 74
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 28 QIWLFEQKDLR-IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
Q+ L + K + I G ++GFD++MNL+LD +EE+ + ++ K LG I+++GDN+ ++
Sbjct: 12 QVVLIKLKGSKTIRGTLLGFDQHMNLLLDSSEEIPAEGDS-KSLGTIVVRGDNVVMI 67
>gi|308806167|ref|XP_003080395.1| Sm-like protein (ISS) [Ostreococcus tauri]
gi|116058855|emb|CAL54562.1| Sm-like protein (ISS) [Ostreococcus tauri]
Length = 95
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P L+ R + S +W+ + + + G + GFD Y+N+VL+D E + N R GR
Sbjct: 17 PSELVERCVGSP----LWVLMKGEKEMTGTLRGFDVYVNMVLEDVTEYEMTANGRVETGR 72
Query: 73 ---ILLKGDNITLMMNTG 87
ILL G+N+ +++ G
Sbjct: 73 MDQILLNGNNVAILVPGG 90
>gi|392577759|gb|EIW70888.1| hypothetical protein TREMEDRAFT_29158 [Tremella mesenterica DSM
1558]
Length = 85
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MAST + P+ L+ R + S I + + + G ++GFD+Y+N+VL D +E
Sbjct: 1 MASTIL------PLELVDRCIGSP----IHVIMKNEREFTGTLMGFDDYVNMVLRDVKEY 50
Query: 61 HIKKNT--RKPLGRILLKGDNITLMMNTGK 88
+ PLG+ LL G+NI +++ G+
Sbjct: 51 QVTPGGIIETPLGQTLLNGNNIVMLIPGGR 80
>gi|302837345|ref|XP_002950232.1| hypothetical protein VOLCADRAFT_109070 [Volvox carteri f.
nagariensis]
gi|300264705|gb|EFJ48900.1| hypothetical protein VOLCADRAFT_109070 [Volvox carteri f.
nagariensis]
Length = 95
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + S+ +W+ + D I G + GFD Y+N+VL+D E+ +K L
Sbjct: 18 PSELIDRCIGSR----MWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEIEDSPEGKKLTKL 73
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ GK
Sbjct: 74 DQILLNGNNIAILVPGGK 91
>gi|109502984|ref|XP_001054331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Rattus
norvegicus]
gi|392333476|ref|XP_003752904.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Rattus
norvegicus]
Length = 90
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + KD I G +GFD+++N+VL+D E I R+ L
Sbjct: 14 PLELVAKCIGS--RIHIVMKSDKD--IVGTPLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITLMM 84
+ILL G+NIT+++
Sbjct: 70 DQILLNGNNITMLV 83
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
+ L+ + + + ++ + G++ FD+++N+VLDDAEE+ +TRK LG I+++G
Sbjct: 6 HKILEENLGKHVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRK-LGTIVIRG 64
Query: 78 DNITLMMNTGK 88
D + L+ G+
Sbjct: 65 DTVVLISPLGE 75
>gi|255953479|ref|XP_002567492.1| Pc21g04460 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589203|emb|CAP95343.1| Pc21g04460 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 83
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S+ IW+ + D G ++GFD+Y+N+V++D E K L +
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKEFSGTLLGFDDYVNMVMEDVTEFDYTGAQIK-LPK 61
Query: 73 ILLKGDNITLMMNTGK 88
+LL G+NI +++ G+
Sbjct: 62 LLLNGNNICMLIPGGE 77
>gi|403216723|emb|CCK71219.1| hypothetical protein KNAG_0G01610 [Kazachstania naganishii CBS
8797]
Length = 86
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
M+ P L + +W+ Q + G ++GFD+++N++++DA E + +
Sbjct: 1 MSVPDILPLEVIDKTISQPVWIILQSNREFTGTLVGFDDFVNVIIEDAVEWTVTDGKSEK 60
Query: 70 L----GRILLKGDNITLMMNTGK 88
+ GR+LL G+NI +++ GK
Sbjct: 61 IMEHHGRMLLSGNNIVMLVPGGK 83
>gi|330801323|ref|XP_003288678.1| hypothetical protein DICPUDRAFT_152939 [Dictyostelium purpureum]
gi|325081300|gb|EGC34821.1| hypothetical protein DICPUDRAFT_152939 [Dictyostelium purpureum]
Length = 92
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
AST++++I+ P+ LI + + S+ IW+ + D G ++GFD Y+N+ L D E
Sbjct: 5 ASTQIEQIL--PLELIEKCIGSR----IWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYE 58
Query: 62 IKKNTRKP--LGRILLKGDNITLMMNTGK 88
K L ILL G+++ L++ G+
Sbjct: 59 YTPEGLKTIKLDNILLNGNHVCLLVPGGE 87
>gi|91078636|ref|XP_968589.1| PREDICTED: similar to Lsm5 protein [Tribolium castaneum]
gi|270004060|gb|EFA00508.1| hypothetical protein TcasGA2_TC003372 [Tribolium castaneum]
Length = 89
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M S V P+ L+ + + S RI I + + D I G ++GFD+++N++L+D E
Sbjct: 1 MTSMPVSSSTLLPLELVDKCIGS--RIHIIM--KNDKEIVGTLLGFDDFVNMLLEDVTEY 56
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTGK 88
R+ L +ILL G+NIT+++ G+
Sbjct: 57 ETTPEGRRITKLDQILLNGNNITMLVPGGE 86
>gi|403411591|emb|CCL98291.1| predicted protein [Fibroporia radiculosa]
Length = 600
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--LGRILLKGDNITLMM 84
+IW+ + + G ++GFD+++N+VL+D E I RK L + LL G+NI +++
Sbjct: 533 RIWVIMKSEREFTGTLLGFDDFVNMVLEDVTEYEITPQGRKATKLAQTLLNGNNICMLI 591
>gi|307104476|gb|EFN52729.1| hypothetical protein CHLNCDRAFT_138271 [Chlorella variabilis]
Length = 99
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRI----IGFDEYMNLVLDDAEEVHIKKNTRK 68
P LI R + SK +W+ + D IEG + GFD ++N+VL+D E I +K
Sbjct: 18 PSELIDRCVGSK----VWVVMRGDKEIEGTLRRVAAGFDVFVNMVLEDVTEYEITPEGKK 73
Query: 69 --PLGRILLKGDNITLMMNTGK 88
L +ILL G+NI +++ GK
Sbjct: 74 VTHLDQILLNGNNIAVLVPGGK 95
>gi|402871503|ref|XP_003899701.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Papio
anubis]
Length = 91
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 11 TQPINLI-FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK- 68
T P L+ F+ +I + + D I G ++GFD+++N+VL D E I R+
Sbjct: 7 TNPSQLLSLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTEFEITPEGRRI 66
Query: 69 -PLGRILLKGDNITLMMNTGK 88
L +ILL G+NIT+++ G+
Sbjct: 67 TKLDQILLNGNNITMLVPGGE 87
>gi|453082042|gb|EMF10090.1| like-Sm ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 81
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI R + S IW+ + D G ++GFD+++N+VL+D E K L +
Sbjct: 7 PLELIDRCVGSP----IWVIMKGDKEFSGTLMGFDDFVNMVLEDVTEYDYTGAHTK-LKK 61
Query: 73 ILLKGDNITLMMNTG 87
ILL G+N+ +++ G
Sbjct: 62 ILLNGNNVAMLIPGG 76
>gi|355691296|gb|EHH26481.1| hypothetical protein EGK_16467 [Macaca mulatta]
Length = 91
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 11 TQPINLI-FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK- 68
T P L+ F+ +I + + D I G ++GFD+++N+VL D E I R+
Sbjct: 7 TNPSQLLPLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTEFEITPEGRRI 66
Query: 69 -PLGRILLKGDNITLMMNTGK 88
L +ILL G+NIT+++ G+
Sbjct: 67 TKLDQILLNGNNITMLVPGGE 87
>gi|20093660|ref|NP_613507.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Methanopyrus kandleri AV19]
gi|19886535|gb|AAM01437.1| Small nuclear ribonucleoprotein (snRNP) homolog [Methanopyrus
kandleri AV19]
Length = 73
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ GR++ FD ++NLVLDD V I +++ LGR+L++GD++TL+
Sbjct: 25 LRGRLVSFDGHLNLVLDDC--VEIDEDSEVRLGRVLIRGDSVTLI 67
>gi|401413338|ref|XP_003886116.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
gi|325120536|emb|CBZ56090.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
Length = 118
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S+ +W+ + D + G + GFD+++N+VLDD E K L
Sbjct: 25 PLALVDKCIGSR----MWIIMKGDKELAGTLRGFDDFVNMVLDDVTEYTFTPTGVKKTKL 80
Query: 71 GRILLKGDNITLMMNTG 87
ILL G+NIT+++ G
Sbjct: 81 QSILLNGNNITMLVPGG 97
>gi|124485152|ref|YP_001029768.1| hypothetical protein Mlab_0325 [Methanocorpusculum labreanum Z]
gi|124362693|gb|ABN06501.1| Like-Sm ribonucleoprotein, core [Methanocorpusculum labreanum Z]
Length = 77
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
PI + + SK ++I + + + EGR++ DEY+NL L+ E V I N R+ +G
Sbjct: 8 PIKKVNSLVDSKISVEI---KDEGCKFEGRLVAMDEYLNLHLE--ETVEITANGRRNIGT 62
Query: 73 ILLKGDNI 80
++++G+NI
Sbjct: 63 VVIRGNNI 70
>gi|407461730|ref|YP_006773047.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045352|gb|AFS80105.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 78
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
I G ++GFD++MNL+LD +EE+ + ++ K LG I+++GDN+ ++
Sbjct: 28 IRGNLLGFDQHMNLLLDSSEEIPAEGDS-KGLGTIVVRGDNVVMI 71
>gi|45201226|ref|NP_986796.1| AGR130Wp [Ashbya gossypii ATCC 10895]
gi|44986080|gb|AAS54620.1| AGR130Wp [Ashbya gossypii ATCC 10895]
gi|374110045|gb|AEY98950.1| FAGR130Wp [Ashbya gossypii FDAG1]
Length = 80
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK-KNTRKPLGRILLKGDNITLMMNT 86
IW+ + G ++GFD+++N+V++D E + ++ GR+LL G+NIT+++
Sbjct: 16 PIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYDAPDRAVKRHPGRMLLSGNNITVLVPG 75
Query: 87 GK 88
GK
Sbjct: 76 GK 77
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
++P++++ R L S+ I++ + G + FD +MNLVL+DAEE+ +++R+ L
Sbjct: 10 SRPLDVLGRALNSQVLIKL----KGGREFRGVLESFDMHMNLVLNDAEELESGESSRR-L 64
Query: 71 GRILLKGDNIT 81
G +L++GDNI
Sbjct: 65 GVVLIRGDNIV 75
>gi|351699507|gb|EHB02426.1| U6 snRNA-associated Sm-like protein LSm5, partial [Heterocephalus
glaber]
Length = 82
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITL 82
+RI I + + D I G ++GFD+++N+VL+D E I R+ L +ILL G+NIT+
Sbjct: 15 SRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITM 72
Query: 83 MMNTGK 88
++ G+
Sbjct: 73 LVPGGE 78
>gi|449551015|gb|EMD41979.1| hypothetical protein CERSUDRAFT_110522 [Ceriporiopsis
subvermispora B]
Length = 85
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI R + S+ IW+ + D G ++GFD+++N+VL+D E +K L
Sbjct: 7 PLELIDRCIGSR----IWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYENTPQGKKKTQL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 AQTLLNGNNICMLI 76
>gi|449283162|gb|EMC89854.1| U6 snRNA-associated Sm-like protein LSm5, partial [Columba livia]
Length = 82
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A+T +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E
Sbjct: 5 ATTNPSQLL--PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLM 83
I R+ L +ILL G+NIT++
Sbjct: 59 IPPEGRRITKLDQILLNGNNITMV 82
>gi|384249954|gb|EIE23434.1| Sm-E protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI + + SK IW+ + D ++G + GFD ++N+VL+D EE + + +
Sbjct: 18 PSELIDKCINSK----IWVIMKGDKELQGTLRGFDVFVNMVLEDVEEYEMTAEGLRVTHM 73
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ GK
Sbjct: 74 DQILLNGNNIAVLVPGGK 91
>gi|213403610|ref|XP_002172577.1| U6 snRNP-associated protein Lsm5 [Schizosaccharomyces japonicus
yFS275]
gi|212000624|gb|EEB06284.1| U6 snRNP-associated protein Lsm5 [Schizosaccharomyces japonicus
yFS275]
Length = 79
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S +W+ + + G ++GFD+Y+N+VL D E+ N +
Sbjct: 7 PLELIDKCIGS----NLWVIMKGEKEFVGTLVGFDDYVNMVLKDVTEIDTITNVTEQHKE 62
Query: 73 ILLKGDNITLMMNTGK 88
ILL G+ I +++ GK
Sbjct: 63 ILLNGNGICMLIPGGK 78
>gi|355700152|gb|AES01357.1| LSM5-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 76
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITL 82
+RI I + + D I G ++GFD+++N+VL+D E I R+ L +ILL G+NIT+
Sbjct: 9 SRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITM 66
Query: 83 MMNTGK 88
++ G+
Sbjct: 67 LVPGGE 72
>gi|330934258|ref|XP_003304477.1| hypothetical protein PTT_17081 [Pyrenophora teres f. teres 0-1]
gi|311318880|gb|EFQ87428.1| hypothetical protein PTT_17081 [Pyrenophora teres f. teres 0-1]
Length = 94
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 13 PINLIFRFLQSKARIQIWLFEQ--------KDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
P+ LI + + S QIW+ + G+++GFD+Y+N+VL+D E+ +
Sbjct: 8 PLELIDKCVGS----QIWVIMNGGKGRLICSHSKFTGKLVGFDDYVNMVLEDVTEIDPAE 63
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
K L +ILL G+NI +M+ G
Sbjct: 64 GNVK-LPKILLNGNNICMMVPGG 85
>gi|452980574|gb|EME80335.1| hypothetical protein MYCFIDRAFT_89886 [Pseudocercospora fijiensis
CIRAD86]
Length = 81
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI R + S IW+ + D G + GFD+++N+VL+D E K L +
Sbjct: 7 PLELIDRCVGSP----IWVIMKGDKEFSGTLQGFDDFVNMVLEDVTEYDYTGAHTK-LNK 61
Query: 73 ILLKGDNITLMMNTG 87
ILL G+NI +++ G
Sbjct: 62 ILLNGNNICMLIPGG 76
>gi|119614396|gb|EAW93990.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
Length = 85
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 8/83 (9%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A+T +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E
Sbjct: 5 ATTNPSQLL--PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE 58
Query: 62 IKKNTRK--PLGRILLKGDNITL 82
I R+ L +ILL G+NIT+
Sbjct: 59 ITPEGRRITKLDQILLNGNNITM 81
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Query: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
++P++++ R L S+ I+ L ++ R G + FD +MNLVL+DAEE+ +++R+ L
Sbjct: 30 SRPLDVLGRALNSQVLIK--LKGGREFR--GVLESFDMHMNLVLNDAEELESGESSRR-L 84
Query: 71 GRILLKGDNIT 81
G +L++GDNI
Sbjct: 85 GVVLIRGDNIV 95
>gi|281343311|gb|EFB18895.1| hypothetical protein PANDA_010826 [Ailuropoda melanoleuca]
Length = 79
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITL 82
+RI I + + D I G ++GFD+++N+VL+D E I R+ L +ILL G+NIT+
Sbjct: 12 SRIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITM 69
Query: 83 MMNTGK 88
++ G+
Sbjct: 70 LVPGGE 75
>gi|164657261|ref|XP_001729757.1| hypothetical protein MGL_3301 [Malassezia globosa CBS 7966]
gi|159103650|gb|EDP42543.1| hypothetical protein MGL_3301 [Malassezia globosa CBS 7966]
Length = 87
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ L+ R + S IW+ + G+++GFD+Y+N+VL+DA E + K L
Sbjct: 9 PLELVDRCIGS----SIWVVMKGQREFVGKLLGFDDYVNMVLEDAVEYEETPDGYKKTHL 64
Query: 71 GRILLKGDNITLMMNTGK 88
+ LL G+NI ++ G+
Sbjct: 65 SKTLLNGNNICTLIPGGQ 82
>gi|257076617|ref|ZP_05570978.1| snRNP Sm-like protein [Ferroplasma acidarmanus fer1]
Length = 71
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 16 LIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILL 75
L + L+ ++ L + + + G ++G+DEYMN+ LDDAEE ++ +G++++
Sbjct: 4 LPMKMLEENLNKKVTLLLKDNRSLVGTLVGYDEYMNMTLDDAEE---NGEVQRKIGKVII 60
Query: 76 KGDNI 80
+G N+
Sbjct: 61 RGSNV 65
>gi|13541906|ref|NP_111594.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Thermoplasma volcanium GSS1]
gi|14325338|dbj|BAB60242.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 71
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
+ L+ ++ L + + +EG + G+D+YMN+VLDD +E +N + LG ++++G
Sbjct: 5 MKLLEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDENS--ENVSRKLGTVVIRG 62
Query: 78 DNI 80
N+
Sbjct: 63 SNV 65
>gi|156555736|ref|XP_001602011.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Nasonia
vitripennis]
Length = 93
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 4 TKVQRIMTQPINLIFRFLQSK---ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
T + T P L+ L K +RI I + + D I G + GFD+++N++LDD E
Sbjct: 2 TSASSVTTNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLKGFDDFVNMLLDDVTES 59
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTG 87
R+ L +ILL G+NIT+++ G
Sbjct: 60 EATPEGRRVTKLDQILLNGNNITMLVPGG 88
>gi|321472276|gb|EFX83246.1| hypothetical protein DAPPUDRAFT_230679 [Daphnia pulex]
Length = 89
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E R+ L
Sbjct: 10 PLELVDKCIGS--RIHIIM--KNDKEIVGTLLGFDDFVNMVLEDVSEFESTPEGRRVTKL 65
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 66 DQILLNGNNITMLVPGGE 83
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ GR+ +D+++NLVL+DAEE++ TRK LG I+++GD + L+
Sbjct: 27 VRGRLKSYDQHLNLVLEDAEEIYEDGRTRK-LGTIVIRGDTVLLI 70
>gi|337284247|ref|YP_004623721.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
gi|334900181|gb|AEH24449.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
Length = 82
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M S +R+ +P+++I R L + + +K G++IG+D ++N+VL DAE +
Sbjct: 1 MKSKGGRRMAERPLDVIHRSLDK----DVLVILKKGFEFRGKLIGYDIHLNVVLADAEMI 56
Query: 61 HIKKNTRKPLGRILLKGDNITLMMNT 86
+ +K G+I+++GDN+ + T
Sbjct: 57 QDGEVVKK-YGKIVIRGDNVLAISPT 81
>gi|164426888|ref|XP_001728350.1| hypothetical protein NCU03766 [Neurospora crassa OR74A]
gi|157071516|gb|EDO65259.1| hypothetical protein NCU03766 [Neurospora crassa OR74A]
Length = 65
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 37 LRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
L G ++GFD+Y+N+VL+D E N K L +ILL G+NI +++ G+
Sbjct: 8 LEFAGTLVGFDDYVNMVLEDVTEFDYSGNHTK-LKKILLNGNNICMLIPGGE 58
>gi|159474956|ref|XP_001695589.1| Sm-E protein [Chlamydomonas reinhardtii]
gi|158275600|gb|EDP01376.1| Sm-E protein [Chlamydomonas reinhardtii]
Length = 95
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI R + SK +W+ + D I G + GFD Y+N+VL+D E+ +K L
Sbjct: 18 PSELIDRCIGSK----MWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEIEDTPEGKKLTKL 73
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ K
Sbjct: 74 DQILLNGNNIAMLVPGAK 91
>gi|312136602|ref|YP_004003939.1| small nuclear ribonucleoprotein, lsm family [Methanothermus
fervidus DSM 2088]
gi|311224321|gb|ADP77177.1| Small nuclear ribonucleoprotein, LSM family [Methanothermus
fervidus DSM 2088]
Length = 80
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M Q+ + +P++ + + L S + I L +++ R G + FD +MNLVL+DAEE+
Sbjct: 1 MMEVNKQKNIQRPLDTLGKSLNSP--VLIRLKGEREFR--GILKSFDLHMNLVLNDAEEI 56
Query: 61 HIKKNTRKPLGRILLKGDNIT 81
+ TRK LG +L++GDNI
Sbjct: 57 ENGEVTRK-LGTVLIRGDNIV 76
>gi|161527729|ref|YP_001581555.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339030|gb|ABX12117.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 78
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 28 QIWLFEQKDLR-IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
QI L + K + I G ++GFD++MNL+LD +EE+ + K LG I+++GDN+ ++
Sbjct: 16 QIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIP-AEGEAKGLGSIVVRGDNVVMI 71
>gi|145348592|ref|XP_001418730.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578960|gb|ABO97023.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 93
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P L+ R + S +W+ + + + G + GFD Y+N+VL+D E R+ GR
Sbjct: 17 PSELVERCVGSP----LWVLMKSERELVGTLRGFDVYVNMVLEDVTEYETTAEGRRVTGR 72
Query: 73 ---ILLKGDNITLMMNTG 87
ILL G+NI +++ G
Sbjct: 73 LDQILLNGNNIAMLVPGG 90
>gi|15678676|ref|NP_275791.1| small nuclear ribonucleoprotein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6094215|sp|O26745.1|RUXX_METTH RecName: Full=Putative snRNP Sm-like protein
gi|2621731|gb|AAB85154.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 81
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 1 MASTKVQRIMTQ-PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 59
M QR+ Q P++ + L S I++ + D G + FD +MNLVL+DAEE
Sbjct: 1 MIDVSSQRVNVQRPLDALGNSLNSPVIIKL----KGDREFRGVLKSFDLHMNLVLNDAEE 56
Query: 60 VHIKKNTRKPLGRILLKGDNIT 81
+ + TR+ LG +L++GDNI
Sbjct: 57 LEDGEVTRR-LGTVLIRGDNIV 77
>gi|322704991|gb|EFY96580.1| small nuclear ribonucleoprotein (LSM5), putative [Metarhizium
anisopliae ARSEF 23]
Length = 100
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 34 QKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
+L G +IGFD+Y+N+VL+D E T L +ILL G+NI +++ G+
Sbjct: 44 NSELEFSGTLIGFDDYVNMVLEDVTEFDYSG-THTKLPKILLNGNNICMLIPGGE 97
>gi|156843124|ref|XP_001644631.1| hypothetical protein Kpol_526p26 [Vanderwaltozyma polyspora DSM
70294]
gi|156115278|gb|EDO16773.1| hypothetical protein Kpol_526p26 [Vanderwaltozyma polyspora DSM
70294]
Length = 86
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 29 IWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----HIKKNTR-KPLGRILLKGDNITLM 83
+W+ Q + G+++GFD+++N++++DA E H + +T + GR+LL G+NI ++
Sbjct: 21 VWIILQSNREFTGKLVGFDDFVNVIIEDAVEYITDNHNQCDTELRHHGRMLLSGNNIAML 80
Query: 84 MNTGK 88
+ G+
Sbjct: 81 VPGGR 85
>gi|301630685|ref|XP_002944447.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like, partial
[Xenopus (Silurana) tropicalis]
Length = 81
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E I R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 71 GRILLKGDNITL 82
+ILL G+NIT+
Sbjct: 70 DQILLNGNNITM 81
>gi|393794933|ref|ZP_10378297.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 76
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
+ G + FD +MNL LD+AE+ I N PLGRILL+GDNI
Sbjct: 27 VRGSLQDFDIHMNLTLDNAED--ISDNKVVPLGRILLRGDNI 66
>gi|255719860|ref|XP_002556210.1| KLTH0H07612p [Lachancea thermotolerans]
gi|238942176|emb|CAR30348.1| KLTH0H07612p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 37/60 (61%)
Query: 29 IWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
+W+ G ++G+D+++N+VL+D E + ++ G++LL G+NI++++ GK
Sbjct: 20 VWVMLTSHREFAGTLVGYDDFVNVVLEDVIEYDHDQEIKRHAGKMLLSGNNISMLVPGGK 79
>gi|198425042|ref|XP_002126895.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm5
[Ciona intestinalis]
Length = 89
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + SK I I + +K+ I G ++GFD+++N+VL+D E R+ L
Sbjct: 12 PLELVDKCIGSK--IHIIMKSEKE--IVGTLLGFDDFVNMVLEDVTEYESTSEGRRISKL 67
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 68 DQILLNGNNITMLVPGGE 85
>gi|50546793|ref|XP_500866.1| YALI0B14058p [Yarrowia lipolytica]
gi|49646732|emb|CAG83117.1| YALI0B14058p [Yarrowia lipolytica CLIB122]
Length = 85
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A +V +I+ P+ L+ + + SK I + + + G ++GFD+++N+VL+D EV+
Sbjct: 5 AEPQVSQIL--PLELVDKCIGSK----ILVLVKSKVEFTGTLVGFDDFVNMVLEDVTEVN 58
Query: 62 IKKNTRKPLGRILLKGDNITLMMNTG 87
K ++LL G +I +++ G
Sbjct: 59 TKTGKETNHSKLLLSGKSIYMLVPGG 84
>gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726410|pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726411|pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726412|pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726413|pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726414|pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726415|pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726416|pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726417|pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726418|pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726419|pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726420|pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726421|pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726422|pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 1 MASTKVQRIMTQ-PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 59
M QR+ Q P++ + L S I++ + D G + FD +MNLVL+DAEE
Sbjct: 1 MIDVSSQRVNVQRPLDALGNSLNSPVIIKL----KGDREFRGVLKSFDLHMNLVLNDAEE 56
Query: 60 VHIKKNTRKPLGRILLKGDNIT 81
+ + TR+ LG +L++GDNI
Sbjct: 57 LEDGEVTRR-LGTVLIRGDNIV 77
>gi|402217704|gb|EJT97783.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 85
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-VHIKKNTRK-PL 70
P+ LI R + S+ IW+ + + GR++GFD+++N+VL+D E + ++ +K L
Sbjct: 7 PLELIDRCIGSR----IWVITKTEREFAGRLLGFDDFVNMVLEDVTEFITTEEGVKKVKL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 QQTLLNGNNICMLV 76
>gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726340|pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726341|pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726342|pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726343|pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726344|pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726345|pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 1 MASTKVQRIMTQ-PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 59
M QR+ Q P++ + L S I++ + D G + FD +MNLVL+DAEE
Sbjct: 1 MIDVSSQRVNVQRPLDALGNSLNSPVIIKL----KGDREFRGVLKSFDLHMNLVLNDAEE 56
Query: 60 VHIKKNTRKPLGRILLKGDNIT 81
+ + TR+ LG +L++GDNI
Sbjct: 57 LEDGEVTRR-LGTVLIRGDNIV 77
>gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150504|pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150505|pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150506|pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150507|pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150508|pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150509|pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150510|pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150511|pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150512|pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150513|pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150514|pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150515|pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150516|pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit
Length = 85
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 1 MASTKVQRIMTQ-PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 59
M QR+ Q P++ + L S I++ + D G + FD +MNLVL+DAEE
Sbjct: 1 MIDVSSQRVNVQRPLDALGNSLNSPVIIKL----KGDREFRGVLKSFDLHMNLVLNDAEE 56
Query: 60 VHIKKNTRKPLGRILLKGDNIT 81
+ + TR+ LG +L++GDNI
Sbjct: 57 LEDGEVTRR-LGTVLIRGDNIV 77
>gi|392571152|gb|EIW64324.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 85
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI R + S+ IW+ + + G ++GFD+++N+VL+D E RK L
Sbjct: 7 PLELIDRCIGSR----IWVIMKSEREFTGTLLGFDDFVNMVLEDVTEYEHTPQGRKKTKL 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 NQTLLNGNNICMLI 76
>gi|254586103|ref|XP_002498619.1| ZYRO0G14696p [Zygosaccharomyces rouxii]
gi|238941513|emb|CAR29686.1| ZYRO0G14696p [Zygosaccharomyces rouxii]
Length = 86
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 29 IWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK-PL----GRILLKGDNITLM 83
+W+ Q + G +IGFD+++N++++DA+EV + + + P+ GR+LL G++I ++
Sbjct: 20 VWIVLQSNREFTGTLIGFDDFVNVIVEDAKEVTVGADLQDIPVMQHKGRMLLSGNSIAML 79
Query: 84 MNTGK 88
+ K
Sbjct: 80 VPGNK 84
>gi|393218481|gb|EJD03969.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 85
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI + S+ IW+ + D G ++GFD+++N+VLDD E RK L
Sbjct: 7 PLELIDTCIGSR----IWVIMKNDREFTGTLLGFDDFVNMVLDDVTEYQYLPEGRKVTML 62
Query: 71 GRILLKGDNITLMM 84
+ LL G+NI +++
Sbjct: 63 RQTLLNGNNICMLI 76
>gi|393246263|gb|EJD53772.1| LSM-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 100
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++++ Q ++ G + GFD ++NLVLDDA++ + + PLG ++++G+++T M
Sbjct: 39 KLFVHIQGGRKVSGTLRGFDIFLNLVLDDAQDESVPAQ-KAPLGTVVIRGNSVTSM 93
>gi|324529784|gb|ADY49042.1| U6 snRNA-associated Sm-like protein LSm5 [Ascaris suum]
Length = 94
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-- 59
+ST P+ L+ + + S+ IW+ + + I G + GFD+Y+N+VL+D E
Sbjct: 6 SSTATNPSTLLPLELVDKCIGSR----IWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYE 61
Query: 60 --VHIKKNTRKPLGRILLKGDNITLMMNTGK 88
V K+ T+ L ILL G++IT+++ G+
Sbjct: 62 NTVDGKRVTK--LDTILLNGNHITMLVPGGE 90
>gi|307203438|gb|EFN82513.1| Probable small nuclear ribonucleoprotein E [Harpegnathos
saltator]
Length = 51
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQ-IWLFEQKDLRIEGRIIGFDEYMN 51
KVQ++M Q I L+ +LQ+ +Q I L ++ L IEG IIGF+EY+N
Sbjct: 1 GPQKVQKVMVQFIRLVLFYLQNHRCVQVIRLLDKVKLEIEGHIIGFNEYVN 51
>gi|344302358|gb|EGW32663.1| hypothetical protein SPAPADRAFT_61726 [Spathaspora passalidarum
NRRL Y-27907]
Length = 84
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
+ I+ QPI L + ++ + D G++IGFD+Y+N+VL+D E+ +
Sbjct: 3 EEIVEQPI-LPLEIIDKSVGNKVKVLMTSDKEFYGKLIGFDDYVNMVLEDVVEIDNEGTK 61
Query: 67 RKPLGRILLKGDNITLMM 84
P+ ++LL G ++ +++
Sbjct: 62 SDPVKKMLLNGGHVAMII 79
>gi|389860536|ref|YP_006362775.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
gi|388525439|gb|AFK50637.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
Length = 76
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
++ L+ + + + ++ I G++ +D+++N+VLDDAEEV ++RK LG ++++G
Sbjct: 7 YKLLEENVGKIVLIKMKGEVSIRGKLRSYDQHLNIVLDDAEEVRGDGSSRK-LGTLVIRG 65
Query: 78 DNITLM 83
D + L+
Sbjct: 66 DTVVLI 71
>gi|332374080|gb|AEE62181.1| unknown [Dendroctonus ponderosae]
Length = 89
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M++ V P+ L+ + + S RI I + + D I G ++GFD+++N++L+D E
Sbjct: 1 MSAMPVSSSTLLPLELVDKCIGS--RIHIIM--KNDKEIVGTLLGFDDFVNMLLEDVTEY 56
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTG 87
R+ L +ILL G+NIT+++ G
Sbjct: 57 ETTPEGRRITRLDQILLNGNNITMLVPGG 85
>gi|322696272|gb|EFY88067.1| putative U6 snRNA-associated protein [Metarhizium acridum CQMa
102]
Length = 81
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 34 QKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
+L G ++GFD+Y+N+VL+D E T L +ILL G+NI +++ G+
Sbjct: 25 NSELEFSGTLVGFDDYVNMVLEDVTEFDY-SGTHTKLPKILLNGNNICMLIPGGE 78
>gi|260807635|ref|XP_002598614.1| hypothetical protein BRAFLDRAFT_118348 [Branchiostoma floridae]
gi|229283887|gb|EEN54626.1| hypothetical protein BRAFLDRAFT_118348 [Branchiostoma floridae]
Length = 87
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E R+ L
Sbjct: 10 PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFENTSEGRRITKL 65
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 66 DQILLNGNNITMLIPGGE 83
>gi|154309621|ref|XP_001554144.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 59
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 43
++++ PIN IF+ LQ + IWL+EQ +RIEG+I
Sbjct: 9 RKVLLPPINFIFKLLQQHTPVSIWLYEQLGIRIEGKI 45
>gi|167043902|gb|ABZ08590.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG3H9]
gi|167044597|gb|ABZ09270.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG7F11]
Length = 76
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
I G ++GFD++MNL+LD AEE+ + LG ++++GDN+ ++
Sbjct: 28 IRGNLLGFDQHMNLLLDQAEEI-LSDGDSNSLGSLVVRGDNVVMI 71
>gi|304314789|ref|YP_003849936.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
gi|302588248|gb|ADL58623.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
Length = 78
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 7 QRIMTQ-PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN 65
QR+ Q P++ + L S I++ + D G + FD +MNLVL+DAEE+ +
Sbjct: 4 QRVNVQRPLDALGNSLNSPVIIKL----KGDREFRGVLKSFDLHMNLVLNDAEELEDGEV 59
Query: 66 TRKPLGRILLKGDNIT 81
TR+ LG +L++GDNI
Sbjct: 60 TRR-LGTVLIRGDNIV 74
>gi|109077185|ref|XP_001093268.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5 [Macaca
mulatta]
gi|355747728|gb|EHH52225.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca fascicularis]
gi|355749905|gb|EHH54243.1| hypothetical protein EGM_15034 [Macaca fascicularis]
Length = 91
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 11 TQPINLI-FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK- 68
T P L+ F+ +I + + D I G ++GFD+++N+VL D E I R+
Sbjct: 7 TNPSQLLPLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTEFEITPEGRRI 66
Query: 69 -PLGRILLKGDNITLMMNTGK 88
L +ILL G+N T+++ G+
Sbjct: 67 TKLDQILLNGNNTTMLVPGGE 87
>gi|84995270|ref|XP_952357.1| small nuclear ribonucleoprotein associated protein b [Theileria
annulata strain Ankara]
gi|65302518|emb|CAI74625.1| small nuclear ribonucleoprotein associated protein b, putative
[Theileria annulata]
Length = 155
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 17/70 (24%)
Query: 26 RIQIWLFEQKDLRIE--------GRIIGFDEYMNLVLDDAEEVHI-------KKNTRKPL 70
R+Q WL Q ++R+ G ++ FD+YMNLVL D EE + + ++ L
Sbjct: 7 RMQHWL--QYNVRVTLKDNRKFVGTLVAFDKYMNLVLSDCEEFRMTLGKDKNRTEVKRTL 64
Query: 71 GRILLKGDNI 80
G +LL+G+NI
Sbjct: 65 GFVLLRGENI 74
>gi|294885997|ref|XP_002771506.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239875210|gb|EER03322.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 97
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S T P L + +IW+ + D + G + GFD+Y+N+VLDD E I
Sbjct: 6 SAPPTATATGPSFLPLALVDKCVGSRIWVIMRGDRELVGTLRGFDDYVNMVLDDVTEYTI 65
Query: 63 KKNTRKPLGR---ILLKGDNITLMMNTGK 88
+ K + + ILL G ++ +++ G
Sbjct: 66 LPDGGKRVDKIESILLNGSSVAMLVPGGS 94
>gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786870|pdb|1I81|B Chain B, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786871|pdb|1I81|C Chain C, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786872|pdb|1I81|D Chain D, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786873|pdb|1I81|E Chain E, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786874|pdb|1I81|F Chain F, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786875|pdb|1I81|G Chain G, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|27573929|pdb|1MGQ|A Chain A, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573930|pdb|1MGQ|B Chain B, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573931|pdb|1MGQ|C Chain C, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573932|pdb|1MGQ|D Chain D, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573933|pdb|1MGQ|E Chain E, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573934|pdb|1MGQ|F Chain F, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573935|pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
Length = 83
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 7 QRIMTQ-PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN 65
QR+ Q P++ + L S I++ + D G + FD +MNLVL+DAEE+ +
Sbjct: 9 QRVNVQRPLDALGNSLNSPVIIKL----KGDREFRGVLKSFDLHMNLVLNDAEELEDGEV 64
Query: 66 TRKPLGRILLKGDNITLM 83
TR+ LG +L++GDNI +
Sbjct: 65 TRR-LGTVLIRGDNIVYI 81
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
++P++++ + L S+ I++ + G + FD +MNLVL+DAEE+ +++R+ L
Sbjct: 10 SRPLDVLGKSLNSQVLIKL----KGGREFRGVLNSFDMHMNLVLNDAEELESGESSRR-L 64
Query: 71 GRILLKGDNIT 81
G +L++GDNI
Sbjct: 65 GVVLIRGDNIV 75
>gi|281208052|gb|EFA82230.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 86
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI + + S+ IW+ + D G ++GFD Y+N+ L D E KP L
Sbjct: 8 PLELIEKCIGSR----IWICMKNDKEFVGTLLGFDTYVNIFLKDVTEYEFTPEGIKPIKL 63
Query: 71 GRILLKGDNITLMMNTGK 88
ILL G+++ L++ G+
Sbjct: 64 ETILLNGNHVCLLVPGGE 81
>gi|209879413|ref|XP_002141147.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556753|gb|EEA06798.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-----VHIKKNTR 67
P+ LI + + S+ I++ + D I G + GFDEY+N+VLD+ EE V + +
Sbjct: 22 PLALIDKCIGSR----IYIILRGDREISGTLRGFDEYVNMVLDEVEEYGYTIVMNESASN 77
Query: 68 KPLGR--------ILLKGDNITLMMNTG 87
K L R ILL G+NI L++ G
Sbjct: 78 KKLKRVLVNRLDTILLSGNNIALLIPGG 105
>gi|237835661|ref|XP_002367128.1| snRNP protein Lsm5, putative [Toxoplasma gondii ME49]
gi|211964792|gb|EEA99987.1| snRNP protein Lsm5, putative [Toxoplasma gondii ME49]
gi|221485337|gb|EEE23618.1| snRNP protein Lsm5, putative [Toxoplasma gondii GT1]
gi|221506198|gb|EEE31833.1| snRNP protein Lsm5, putative [Toxoplasma gondii VEG]
Length = 119
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S+ +W+ + D + G + GFD+++N+VLDD E K L
Sbjct: 26 PLALVDKCIGSR----MWIIMKGDKELAGTLRGFDDFVNMVLDDVTEYTFTPTGVKKTKL 81
Query: 71 GRILLKGDNITLMMNTG 87
ILL G++IT+++ G
Sbjct: 82 QSILLNGNSITMLVPGG 98
>gi|157103848|ref|XP_001648155.1| small nuclear ribonucleoprotein, core, putative [Aedes aegypti]
gi|108869330|gb|EAT33555.1| AAEL014169-PA [Aedes aegypti]
Length = 92
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 1 MASTKVQRIMTQ-PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 59
MA T V T P+ L+ + + S+ I + + D I G ++GFD+++N++L+D E
Sbjct: 1 MAQTTVSNQSTLLPLELVDKCIGSR----IHIIMKNDKEIVGTLLGFDDFVNMLLEDVTE 56
Query: 60 VHIKKNTRK--PLGRILLKGDNITLMMNTG 87
R+ L +ILL G+NIT+++ G
Sbjct: 57 YENTSEGRRITKLDQILLNGNNITMLVPGG 86
>gi|452822058|gb|EME29081.1| U6 snRNA-associated Sm-like protein LSm5 [Galdieria sulphuraria]
Length = 89
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN--TRKPL 70
P+ L+ + + S QIW+ + D G + GFD+++N+VL+D E R L
Sbjct: 10 PLELVDKCIGS----QIWVLMKTDKEFTGILRGFDQFVNMVLEDVSEYEWTSEGLIRTHL 65
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G
Sbjct: 66 DQILLNGNNICVLIPGGA 83
>gi|393215720|gb|EJD01211.1| like-Sm ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 77
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++++ Q ++ G + GFD ++NLVLDDA E + P+G ++++G+++TLM
Sbjct: 16 KLFVHLQGGRKVSGTLRGFDIFLNLVLDDAIE-ETTPAQKSPIGNVVIRGNSVTLM 70
>gi|195222722|ref|NP_001124182.1| U6 snRNA-associated Sm-like protein LSm5 isoform b [Homo sapiens]
gi|213385305|ref|NP_001132971.1| U6 snRNA-associated Sm-like protein LSm5 isoform b [Homo sapiens]
gi|332242764|ref|XP_003270554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Nomascus leucogenys]
gi|332242766|ref|XP_003270555.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 3
[Nomascus leucogenys]
gi|332242768|ref|XP_003270556.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 4
[Nomascus leucogenys]
gi|332864463|ref|XP_003318296.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Pan troglodytes]
gi|332864465|ref|XP_003318297.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Pan troglodytes]
gi|402863786|ref|XP_003896180.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Papio anubis]
gi|410058757|ref|XP_003951029.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Pan
troglodytes]
gi|410058759|ref|XP_003951030.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Pan
troglodytes]
gi|426355883|ref|XP_004045333.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
3 [Gorilla gorilla gorilla]
gi|426355885|ref|XP_004045334.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
4 [Gorilla gorilla gorilla]
gi|426355887|ref|XP_004045335.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
5 [Gorilla gorilla gorilla]
gi|426355889|ref|XP_004045336.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
6 [Gorilla gorilla gorilla]
gi|441650806|ref|XP_004091023.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Nomascus
leucogenys]
gi|344235531|gb|EGV91634.1| U6 snRNA-associated Sm-like protein LSm5 [Cricetulus griseus]
Length = 62
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 34 QKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 88
+ D I G ++GFD+++N+VL+D E I R+ L +ILL G+NIT+++ G+
Sbjct: 2 KSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 58
>gi|339233484|ref|XP_003381859.1| putative LSM domain protein [Trichinella spiralis]
gi|339261308|ref|XP_003367972.1| putative LSM domain protein [Trichinella spiralis]
gi|316964809|gb|EFV49750.1| putative LSM domain protein [Trichinella spiralis]
gi|316979279|gb|EFV62087.1| putative LSM domain protein [Trichinella spiralis]
Length = 92
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
ST V P+ LI + + SK +W+ + + + G ++GFD+Y+N+VL+D E
Sbjct: 4 PSTAVNPSTLLPLELIDKCIGSK----LWIVMKGNKELVGTLLGFDDYVNIVLEDVIEYE 59
Query: 62 I----KKNTRKPLGRILLKGDNITLMMNTGK 88
K+ TR L +ILL G +I +++ G+
Sbjct: 60 TTTEGKRITR--LDQILLNGTHIAMLIPGGE 88
>gi|225710006|gb|ACO10849.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ R + S RI I + + D I G ++GFD+++N+VL+D E ++ L
Sbjct: 15 PLELVDRAIGS--RIHIIM--KGDKEIVGTLLGFDDFVNMVLEDVTEFESTSEGQRVSKL 70
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 71 DQILLNGNNITMLVPGGE 88
>gi|21358059|ref|NP_648022.1| CG6610, isoform A [Drosophila melanogaster]
gi|442630491|ref|NP_001261461.1| CG6610, isoform B [Drosophila melanogaster]
gi|442630493|ref|NP_001261462.1| CG6610, isoform C [Drosophila melanogaster]
gi|194867419|ref|XP_001972067.1| GG15317 [Drosophila erecta]
gi|195337817|ref|XP_002035522.1| GM14749 [Drosophila sechellia]
gi|195492179|ref|XP_002093879.1| GE21536 [Drosophila yakuba]
gi|195588132|ref|XP_002083812.1| GD13931 [Drosophila simulans]
gi|7295386|gb|AAF50703.1| CG6610, isoform A [Drosophila melanogaster]
gi|21064593|gb|AAM29526.1| RE60135p [Drosophila melanogaster]
gi|190653850|gb|EDV51093.1| GG15317 [Drosophila erecta]
gi|194128615|gb|EDW50658.1| GM14749 [Drosophila sechellia]
gi|194179980|gb|EDW93591.1| GE21536 [Drosophila yakuba]
gi|194195821|gb|EDX09397.1| GD13931 [Drosophila simulans]
gi|220950876|gb|ACL87981.1| CG6610-PA [synthetic construct]
gi|220959480|gb|ACL92283.1| CG6610-PA [synthetic construct]
gi|440215357|gb|AGB94156.1| CG6610, isoform B [Drosophila melanogaster]
gi|440215358|gb|AGB94157.1| CG6610, isoform C [Drosophila melanogaster]
Length = 91
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D + G ++GFD+++N++LDD E + R+ L
Sbjct: 15 PLELVDKCIGS--RIHIIM--KNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRITKL 70
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 71 DQILLNGNNITMLVPGGE 88
>gi|195011763|ref|XP_001983306.1| GH15826 [Drosophila grimshawi]
gi|195125111|ref|XP_002007026.1| GI12608 [Drosophila mojavensis]
gi|195374668|ref|XP_002046125.1| GJ12731 [Drosophila virilis]
gi|193896788|gb|EDV95654.1| GH15826 [Drosophila grimshawi]
gi|193918635|gb|EDW17502.1| GI12608 [Drosophila mojavensis]
gi|194153283|gb|EDW68467.1| GJ12731 [Drosophila virilis]
Length = 91
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D + G ++GFD+++N++LDD E + R+ L
Sbjct: 15 PLELVDKCIGS--RIHIIM--KNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRITKL 70
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 71 DQILLNGNNITMLVPGGE 88
>gi|148642242|ref|YP_001272755.1| small nuclear ribonucleoprotein [Methanobrevibacter smithii ATCC
35061]
gi|222444586|ref|ZP_03607101.1| hypothetical protein METSMIALI_00198 [Methanobrevibacter smithii
DSM 2375]
gi|261350875|ref|ZP_05976292.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
gi|148551259|gb|ABQ86387.1| snRNP Sm-like protein [Methanobrevibacter smithii ATCC 35061]
gi|222434151|gb|EEE41316.1| LSM domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860212|gb|EFC92510.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
Length = 76
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 9/81 (11%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+ VQR P++ + + + S I++ + D G + FD +MNLVL+DAEE+
Sbjct: 1 MSGQNVQR----PLDALGKSVNSPVLIKL----KGDREFRGILKSFDLHMNLVLNDAEEL 52
Query: 61 HIKKNTRKPLGRILLKGDNIT 81
+ TR+ LG +L++GDNI
Sbjct: 53 QDGEVTRR-LGVVLIRGDNIV 72
>gi|125979619|ref|XP_001353842.1| GA19721 [Drosophila pseudoobscura pseudoobscura]
gi|194752281|ref|XP_001958451.1| GF23512 [Drosophila ananassae]
gi|195171277|ref|XP_002026433.1| GL15546 [Drosophila persimilis]
gi|54640826|gb|EAL29577.1| GA19721 [Drosophila pseudoobscura pseudoobscura]
gi|190625733|gb|EDV41257.1| GF23512 [Drosophila ananassae]
gi|194111339|gb|EDW33382.1| GL15546 [Drosophila persimilis]
Length = 91
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D + G ++GFD+++N++LDD E + R+ L
Sbjct: 15 PLELVDKCIGS--RIHIIM--KNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRITKL 70
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 71 DQILLNGNNITMLVPGGE 88
>gi|297527485|ref|YP_003669509.1| hypothetical protein Shell_1522 [Staphylothermus hellenicus DSM
12710]
gi|297256401|gb|ADI32610.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 75
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G++ +D+++N+VLDDAEE+ +TRK LG I+++GD + L+
Sbjct: 27 VRGKLKSYDQHLNIVLDDAEEIRENGSTRK-LGTIVIRGDTVILI 70
>gi|50290221|ref|XP_447542.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526852|emb|CAG60479.1| unnamed protein product [Candida glabrata]
Length = 90
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL---------GRILLKGD 78
Q+ + Q + G+++GFDE++N++L+D E + L GR+LL G+
Sbjct: 19 QVHIILQSNREFSGKLVGFDEFVNVILEDPIEYTTEITANDGLKSEVVMEHHGRMLLSGN 78
Query: 79 NITLMMNTGK 88
NIT+++ GK
Sbjct: 79 NITMLVPGGK 88
>gi|429327489|gb|AFZ79249.1| small nuclear ribonucleoprotein-associated protein B, putative
[Babesia equi]
Length = 153
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 15/68 (22%)
Query: 26 RIQIWLFEQKDLRIE--------GRIIGFDEYMNLVLDDAEEVHIKKNT-----RKPLGR 72
R+Q WL Q +R+ G +I FD++MNLVL D EE + K ++ LG
Sbjct: 7 RMQQWL--QYTVRVTVKDGRKFVGTLIAFDKHMNLVLADCEEFRMTKGKEGKEIKRTLGF 64
Query: 73 ILLKGDNI 80
ILL+G+NI
Sbjct: 65 ILLRGENI 72
>gi|242023983|ref|XP_002432410.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517833|gb|EEB19672.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 91
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
AS P+ L+ + + S RI I + + D I G ++GFD+++N++L+D E
Sbjct: 3 ASVATNPSTLLPLELVDKCIGS--RIHIIM--KNDKEIVGTLLGFDDFVNMLLEDVTEYE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLMMNTGK 88
R+ L +ILL G+NIT+++ G+
Sbjct: 59 STPEGRRITKLDQILLNGNNITMLVPGGE 87
>gi|403221170|dbj|BAM39303.1| uncharacterized protein TOT_010000762 [Theileria orientalis
strain Shintoku]
Length = 90
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD-AEEVHIKKNTRKP-L 70
P+ LI + L SK IW+ + D I G + GFD+YMN+VL+D + + + R L
Sbjct: 12 PLALIDKCLGSK----IWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYTYTAEGVRTTEL 67
Query: 71 GRILLKGDNITLMMNTGK 88
L+ G+ I +++ GK
Sbjct: 68 PDALVNGNYIAMLVPGGK 85
>gi|221118892|ref|XP_002154101.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Hydra
magnipapillata]
Length = 93
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P LI + + SK I + + D I G +GFD+++N+VL+D E R+ L
Sbjct: 16 PFELIDKCIGSK----IHIIMKTDREIVGTFLGFDDFVNVVLEDVTEFENTPEGRRITKL 71
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 72 DQILLNGNNITMLVPGGQ 89
>gi|193582383|ref|XP_001951255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Acyrthosiphon pisum]
Length = 91
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N++L+D E R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KNDKEIVGTLLGFDDFVNMLLEDVTEYESTPEGRRVTKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 70 DQILLNGNNITMLVPGGE 87
>gi|359477805|ref|XP_003632024.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Vitis vinifera]
Length = 88
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIKKNTRK--P 69
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E I R+
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYSEITSEGRRITK 65
Query: 70 LGRILLKGDNITLMMNTGK 88
L +ILL G+NI +++ G
Sbjct: 66 LDQILLNGNNIAILVPGGS 84
>gi|386875165|ref|ZP_10117354.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807044|gb|EIJ66474.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 79
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
++G +I FD +MNL LD+AE++ K + LG+ILL+GDNI
Sbjct: 30 VQGTLIDFDIHMNLTLDNAEDISEGKTEK--LGKILLRGDNI 69
>gi|403166042|ref|XP_003889979.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
gi|375166047|gb|EHS63049.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
Length = 84
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI R + S+ IW+ + G+++GFD+Y+N+VL+D E +K L
Sbjct: 7 PLELIDRCIGSR----IWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAEGQKVTNL 62
Query: 71 GRILLKGDNITLMMNTG 87
+ LL G+ I +++ G
Sbjct: 63 KQTLLNGNQICMLVPGG 79
>gi|422293907|gb|EKU21207.1| hypothetical protein NGA_2089810, partial [Nannochloropsis gaditana
CCMP526]
gi|422294090|gb|EKU21390.1| hypothetical protein NGA_2089820, partial [Nannochloropsis gaditana
CCMP526]
Length = 162
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEV 60
+ + T P L++R Q K + + + + LR + GR+ GFD + NLVL++AEE
Sbjct: 82 AESLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAEEA 138
>gi|195427721|ref|XP_002061925.1| GK17260 [Drosophila willistoni]
gi|194158010|gb|EDW72911.1| GK17260 [Drosophila willistoni]
Length = 91
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D + G ++GFD+++N++LDD E + R+ L
Sbjct: 15 PLELVDKCIGS--RIHIIM--KNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRVTKL 70
Query: 71 GRILLKGDNITLMMNTG 87
+ILL G+NIT+++ G
Sbjct: 71 DQILLNGNNITMLVPGG 87
>gi|110760718|ref|XP_001120607.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Apis
mellifera]
gi|340715932|ref|XP_003396461.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Bombus
terrestris]
gi|350396810|ref|XP_003484674.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Bombus
impatiens]
gi|380019757|ref|XP_003693769.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Apis
florea]
gi|383866113|ref|XP_003708516.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Megachile rotundata]
Length = 91
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N++L+D E R+ L
Sbjct: 14 PLELVDKCIGS--RIHIIM--KNDKEIVGTLLGFDDFVNMLLEDVTESEATPEGRRVTKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G NIT+++ G+
Sbjct: 70 DQILLNGSNITMLVPGGE 87
>gi|296234717|ref|XP_002762581.1| PREDICTED: uncharacterized protein LOC100410554 [Callithrix
jacchus]
Length = 655
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A+T P+ L+ + + S RI I L + D I G ++G +++N+VL+D E
Sbjct: 568 ANTTTNPSQLLPLELVGKCIGS--RIHIVL--ESDKEIVGALLGLADFVNMVLEDVTEFE 623
Query: 62 IKKNTRK--PLGRILLKGDNITLMM 84
I R+ L +ILL G+NIT+++
Sbjct: 624 ISPEGRRITKLDQILLNGNNITMLV 648
>gi|126465841|ref|YP_001040950.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126014664|gb|ABN70042.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 75
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G++ +D+++N+VLDDAEE+ +TRK LG I+++GD + L+
Sbjct: 27 VRGKLKSYDQHLNIVLDDAEEIKEDGSTRK-LGTIVIRGDTVILI 70
>gi|428672985|gb|EKX73898.1| U6 small nuclear ribonucleoprotein E, putative [Babesia equi]
Length = 88
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI + L SK IW+ + D I G + GFD+YMN+VL++ E K L
Sbjct: 12 PLALIDKCLGSK----IWIIMKGDKEIAGILRGFDDYMNMVLEEVTEYSFTPEGIKTTKL 67
Query: 71 GRILLKGDNITLMMNTGK 88
L+ G+ I +++ GK
Sbjct: 68 SDALVNGNYIAMLVPGGK 85
>gi|367033203|ref|XP_003665884.1| hypothetical protein MYCTH_2310069 [Myceliophthora thermophila
ATCC 42464]
gi|347013156|gb|AEO60639.1| hypothetical protein MYCTH_2310069 [Myceliophthora thermophila
ATCC 42464]
Length = 59
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 43
++ PIN +FR LQ + +QIWL+EQ +RI G I
Sbjct: 12 VLLPPINFLFRLLQQRTTVQIWLYEQLSIRIIGTI 46
>gi|383848568|ref|XP_003699921.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like
[Megachile rotundata]
Length = 225
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
P+ +++ +++S+ RI+++ +R +E + FD++ NL L+D EV +K RK
Sbjct: 113 PLGMLYGYMESRTRIKVYTRNAYGIRGHVEAYVAAFDKHWNLALEDCFEVWTRKTKRKAP 172
Query: 71 GR 72
R
Sbjct: 173 AR 174
>gi|14591301|ref|NP_143379.1| small nuclear ribonucleoprotein [Pyrococcus horikoshii OT3]
gi|6094216|sp|O74016.1|RUXX_PYRHO RecName: Full=Putative snRNP Sm-like protein
gi|3257945|dbj|BAA30628.1| 75aa long hypothetical small nucleoprotein [Pyrococcus horikoshii
OT3]
Length = 75
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I R L + + +K GR+IG+D ++N+VL DAE V + +K G
Sbjct: 4 RPLDVIHRSLDK----DVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDGEVVKK-YG 58
Query: 72 RILLKGDNITLMMNT 86
+I+++GDN+ + T
Sbjct: 59 KIVIRGDNVLAISPT 73
>gi|388579402|gb|EIM19726.1| LSM-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 87
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT---RKP 69
P+ LI + + S+ IW+ + + G + GFD+++N+VLDD E I + +
Sbjct: 7 PLELIDKCIGSR----IWVIMKNEREFVGTLQGFDDFVNMVLDDVTEYDISPDGTQKKSK 62
Query: 70 LGRILLKGDNITLMMNTGK 88
L + LL G+N+ +++ G+
Sbjct: 63 LRQTLLNGNNVCMLLPGGE 81
>gi|407464208|ref|YP_006775090.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047396|gb|AFS82148.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 76
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Query: 21 LQSKARIQIWLFEQKDLR-IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDN 79
L + ++ ++ L ++ R ++G + FD +MNL L+DAE+V +K+ + LG+ILL+GDN
Sbjct: 8 LMTNSKGKVVLLRLRNTRTVQGTLRDFDIHMNLTLEDAEDVTEEKHEK--LGKILLRGDN 65
Query: 80 I 80
I
Sbjct: 66 I 66
>gi|71030572|ref|XP_764928.1| small nuclear ribonucleoprotein B [Theileria parva strain Muguga]
gi|68351884|gb|EAN32645.1| small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 155
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 17/70 (24%)
Query: 26 RIQIWLFEQKDLRIE--------GRIIGFDEYMNLVLDDAEEVHI-------KKNTRKPL 70
R+Q WL Q ++R+ G ++ +D+YMNLVL D EE + + ++ L
Sbjct: 7 RMQHWL--QYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTEVKRTL 64
Query: 71 GRILLKGDNI 80
G +LL+G+NI
Sbjct: 65 GFVLLRGENI 74
>gi|443685344|gb|ELT88979.1| hypothetical protein CAPTEDRAFT_188465 [Capitella teleta]
Length = 85
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMN 85
+I + + D I G ++GFD+++N+VL+D E R+ L +ILL G+NIT+++
Sbjct: 19 KIHIVMKNDKEIVGTLLGFDDFVNMVLEDVVEYETTAEGRRVTTLDQILLNGNNITMLVP 78
Query: 86 TGK 88
G+
Sbjct: 79 GGE 81
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE----------VHIKKNTRKPLGRILL 75
R+++ L + + I GR + FD +MNLVL DAEE +++ R+ LG +LL
Sbjct: 16 RMRVTLIDSR--HIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGRTEEERDQRRVLGLVLL 73
Query: 76 KGDNITLMMNTG 87
+GD + + G
Sbjct: 74 RGDEVISLTVEG 85
>gi|344228576|gb|EGV60462.1| hypothetical protein CANTEDRAFT_116517 [Candida tenuis ATCC
10573]
Length = 97
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 36 DLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 86
D G+++GFD+++N+VL+D E + NT P+ +LL G I ++ +T
Sbjct: 45 DKEFTGKLVGFDDFVNVVLEDVTETDSEGNTDGPVKIMLLNGGQIAMISST 95
>gi|397641777|gb|EJK74845.1| hypothetical protein THAOC_03454 [Thalassiosira oceanica]
Length = 1567
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 17 IFRFLQSKARIQIWLFEQKDLR-IEGRIIGFDEYMNLVLDDAEEVHIKKNTR-------- 67
+ R+++ + RI + D R I G + FD+++NLVL DAEE K++R
Sbjct: 1265 LLRYVEHRLRISL-----ADGRTIVGTFLAFDKHLNLVLVDAEEFRTLKSSRAAILEERV 1319
Query: 68 --KPLGRILLKGDNITLMMNTG 87
+ LG I+L+G+N+ M G
Sbjct: 1320 EKRSLGLIILRGENVVSMAVEG 1341
>gi|67539018|ref|XP_663283.1| hypothetical protein AN5679.2 [Aspergillus nidulans FGSC A4]
gi|40743582|gb|EAA62772.1| hypothetical protein AN5679.2 [Aspergillus nidulans FGSC A4]
Length = 110
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 37 LRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
L G ++GFD+Y+N+VL+D E K L +ILL G+NI +++ G+
Sbjct: 54 LEFSGTLLGFDDYVNMVLEDVTEFDYTGAQVK-LPKILLNGNNICMLIPGGE 104
>gi|340369286|ref|XP_003383179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Amphimedon queenslandica]
Length = 108
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITL 82
+RI I + + D I G ++GFD+++N+VL+D E + R+ L ILL G+NI +
Sbjct: 44 SRIHI-IMKSSDKEIVGTLLGFDDFVNVVLEDVTEFEMTPEGRRITKLDEILLNGNNIAM 102
Query: 83 MMNTGK 88
++ G+
Sbjct: 103 LIPGGE 108
>gi|170593543|ref|XP_001901523.1| U6 snRNA-associated Sm-like protein LSm5 [Brugia malayi]
gi|312071704|ref|XP_003138731.1| hypothetical protein LOAG_03146 [Loa loa]
gi|158590467|gb|EDP29082.1| U6 snRNA-associated Sm-like protein LSm5, putative [Brugia
malayi]
gi|402593447|gb|EJW87374.1| small nuclear ribonucleoprotein [Wuchereria bancrofti]
Length = 91
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 10/80 (12%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE----VHIKKNTRK 68
P+ L+ + + S+ IW+ + + I G + GFD+Y+N+VL+D E V K+ T+
Sbjct: 14 PLELVDKCIGSR----IWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTVDGKRVTK- 68
Query: 69 PLGRILLKGDNITLMMNTGK 88
L ILL G++IT+++ G+
Sbjct: 69 -LDTILLNGNHITMLVPGGE 87
>gi|330038664|ref|XP_003239663.1| small nuclear ribonucleoprotein E [Cryptomonas paramecium]
gi|327206587|gb|AEA38765.1| small nuclear ribonucleoprotein E [Cryptomonas paramecium]
Length = 49
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 81
G+++GFDE+MNLVL ++ ++ +K LG+ ++KGD+I
Sbjct: 3 GKLVGFDEFMNLVLSESYQIDF-SGQKKFLGKAMIKGDSIA 42
>gi|167517977|ref|XP_001743329.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778428|gb|EDQ92043.1| predicted protein [Monosiga brevicollis MX1]
Length = 83
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL- 70
QP+ L+ + + S RI + + K+L G ++GFD+++N+VL+D +E I N R+
Sbjct: 6 QPLELVDKCIGS--RIHVIMKNDKELV--GTLLGFDDFVNMVLEDVKEYVITPNGREVHR 61
Query: 71 -GRILLKGDNITLMM 84
+ILL G NI +++
Sbjct: 62 QKKILLNGSNIAILV 76
>gi|339245769|ref|XP_003374518.1| putative small nuclear ribonucleoprotein G [Trichinella spiralis]
gi|316972305|gb|EFV55988.1| putative small nuclear ribonucleoprotein G [Trichinella spiralis]
Length = 76
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 36 DLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
D +I G + GFD +MN+V+D+A E H+K + +G ++++G+++TLM
Sbjct: 24 DRKISGVLRGFDPFMNMVIDEAVE-HLKTGEQIMIGMVVVRGNSVTLM 70
>gi|290561451|gb|ADD38126.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus
salmonis]
Length = 95
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E R+ L
Sbjct: 15 PLELVDKAIGS--RIHIIM--KNDKEIVGTLLGFDDFVNMVLEDVTEYESTPEGRRVSKL 70
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G++IT+++ G+
Sbjct: 71 DQILLNGNHITMLVPGGE 88
>gi|290561032|gb|ADD37918.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus
salmonis]
Length = 95
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E R+ L
Sbjct: 15 PLELVDKAIGS--RIHIIM--KNDKEIVGTLLGFDDFVNMVLEDVTEYESTPEGRRVSKL 70
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G++IT+++ G+
Sbjct: 71 DQILLNGNHITMLVPGGE 88
>gi|393912158|gb|EFO25335.2| hypothetical protein LOAG_03146 [Loa loa]
Length = 111
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 10/80 (12%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE----VHIKKNTRK 68
P+ L+ + + S+ IW+ + + I G + GFD+Y+N+VL+D E V K+ T+
Sbjct: 34 PLELVDKCIGSR----IWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTVDGKRVTK- 88
Query: 69 PLGRILLKGDNITLMMNTGK 88
L ILL G++IT+++ G+
Sbjct: 89 -LDTILLNGNHITMLVPGGE 107
>gi|256073118|ref|XP_002572879.1| hypothetical protein [Schistosoma mansoni]
gi|360045255|emb|CCD82803.1| hypothetical protein Smp_129760 [Schistosoma mansoni]
Length = 87
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + SK I + + D + G ++GFD Y+N+VL D E ++ L
Sbjct: 10 PLELVDKCIGSK----IHIIMKNDKEMVGTLLGFDSYVNMVLADVTEFEFTAQGKRITKL 65
Query: 71 GRILLKGDNITLMMNTGK 88
ILL G NI +M+ G+
Sbjct: 66 PHILLNGSNIVMMVPGGE 83
>gi|157107685|ref|XP_001649890.1| small nuclear ribonucleoprotein, core, putative [Aedes aegypti]
gi|108879502|gb|EAT43727.1| AAEL004848-PA [Aedes aegypti]
Length = 92
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 1 MASTKVQ-RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 59
MA T V + P+ L+ + + S+ I + + D I G ++GFD+++N++L+D E
Sbjct: 1 MAQTTVSNQSALLPLELVDKCIGSR----IHIIMKNDKEIVGTLLGFDDFVNMLLEDVTE 56
Query: 60 VHIKKNTRK--PLGRILLKGDNITLMMNTG 87
R+ L +ILL G+NIT+++ G
Sbjct: 57 YENTSEGRRITKLDQILLNGNNITMLVPGG 86
>gi|328856633|gb|EGG05753.1| hypothetical protein MELLADRAFT_87625 [Melampsora larici-populina
98AG31]
Length = 935
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI R + S+ IW+ + G+++GFD+Y+N+VL+D E K L
Sbjct: 859 PLELIDRCIGSR----IWVVMKTGREFTGKLLGFDDYVNMVLEDVTEYETTAEGHKITNL 914
Query: 71 GRILLKGDNITLMMNTG 87
+ LL G+ I +++ G
Sbjct: 915 KQTLLNGNQICMLVPGG 931
>gi|170055785|ref|XP_001863736.1| Lsm5 protein [Culex quinquefasciatus]
gi|167875611|gb|EDS38994.1| Lsm5 protein [Culex quinquefasciatus]
Length = 92
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 1 MASTKVQRIMTQ-PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 59
MA + V T P+ L+ + + S RI I + + D I G ++GFD+++N++L+D E
Sbjct: 1 MAQSTVSNQSTLLPLELVDKCIGS--RIHIIM--KNDKEIVGTLLGFDDFVNMLLEDVTE 56
Query: 60 VHIKKNTRK--PLGRILLKGDNITLMMNTG 87
R+ L +ILL G+NIT+++ G
Sbjct: 57 YENTPEGRRITKLDQILLNGNNITMLVPGG 86
>gi|159110758|ref|XP_001705624.1| SnRNP Sm-like protein, putative [Giardia lamblia ATCC 50803]
gi|157433711|gb|EDO77950.1| SnRNP Sm-like protein, putative [Giardia lamblia ATCC 50803]
Length = 85
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
M P + F ++ +R+ +W + + G +G DE+ N+VL DA + I +
Sbjct: 1 MPSPALELCAFARANSRVTLWPVDPHSGVLTGTCVGLDEFFNVVLQDA-TLEIPGSDPTS 59
Query: 70 LGRILLKGDNITLM 83
L +L++ D I ++
Sbjct: 60 LPVVLVRADTIAMV 73
>gi|158296145|ref|XP_316632.4| AGAP006604-PA [Anopheles gambiae str. PEST]
gi|157016373|gb|EAA10979.4| AGAP006604-PA [Anopheles gambiae str. PEST]
Length = 94
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 1 MASTKVQRIMTQ-PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 59
MA T V T P+ L+ + + S RI I + + D I G ++GFD+++N++L+D E
Sbjct: 1 MAQTTVANQSTLLPLELVDKCIGS--RIHIIM--KNDKEIVGTLLGFDDFVNMLLEDVTE 56
Query: 60 VHIKKNTRK--PLGRILLKGDNITLMM 84
R+ L +ILL G+NIT+++
Sbjct: 57 YENTPEGRRITKLDQILLNGNNITMLV 83
>gi|225711126|gb|ACO11409.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E ++ L
Sbjct: 15 PLELVDKAIGS--RIHIIM--KGDKEIVGTLLGFDDFVNMVLEDVTEFESTSEGQRVSKL 70
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NIT+++ G+
Sbjct: 71 DQILLNGNNITMLVPGGE 88
>gi|403166044|ref|XP_003325954.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|375166048|gb|EFP81535.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 128
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ LI R + S+ IW+ + G+++GFD+Y+N+VL+D E +K L
Sbjct: 7 PLELIDRCIGSR----IWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAEGQKVTNL 62
Query: 71 GRILLKGDNITLMMNT 86
+ LL G+ I ++ +
Sbjct: 63 KQTLLNGNQICMVSGS 78
>gi|393795269|ref|ZP_10378633.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 81
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 21 LQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
LQ + ++ + + ++ +G++ D YMNL++ DAEE+H K T GR++++G+N+
Sbjct: 14 LQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELHDGK-TIANYGRVIVRGNNV 72
>gi|367010514|ref|XP_003679758.1| hypothetical protein TDEL_0B04180 [Torulaspora delbrueckii]
gi|359747416|emb|CCE90547.1| hypothetical protein TDEL_0B04180 [Torulaspora delbrueckii]
Length = 85
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA-EEVHIKKNTRK 68
M+ P L + +W+ Q + G ++GFD+++N++++DA E V+ K +
Sbjct: 1 MSVPEILPLEIIDKTISQPVWIVLQSNREFTGTLVGFDDFVNVIIEDAVEWVYNSKFEDE 60
Query: 69 PL----GRILLKGDNITLMMNTGK 88
+ GR+LL G+NI +++ G+
Sbjct: 61 KILEHHGRMLLSGNNIAMLVPGGR 84
>gi|161527598|ref|YP_001581424.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407461586|ref|YP_006772903.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|160338899|gb|ABX11986.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407045208|gb|AFS79961.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 81
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 21 LQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
LQ + ++ + + ++ +G++ D YMNL++ DAEE+H K T GR++++G+N+
Sbjct: 14 LQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELHEGK-TIANYGRVIVRGNNV 72
>gi|407463901|ref|YP_006774783.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047089|gb|AFS81841.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 81
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 21 LQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
LQ + ++ + + ++ +G++ D YMNL++ DAEE+H K T GR++++G+N+
Sbjct: 14 LQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELHDGK-TIANYGRVIVRGNNV 72
>gi|219113037|ref|XP_002186102.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582952|gb|ACI65572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 94
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + SK IW+ + + G + GFD+Y+NLVLD+A E + + + R
Sbjct: 7 PLELIDKAIGSK----IWVLMRGTKEVVGTLQGFDDYVNLVLDNAVEFSPDPHDKSKVVR 62
Query: 73 ------ILLKGDNITLMMNTGK 88
ILL G+ I L++ G
Sbjct: 63 NELSCEILLNGNQIALLVPGGS 84
>gi|401625995|gb|EJS43964.1| lsm5p [Saccharomyces arboricola H-6]
Length = 93
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE--VHIKKNTR 67
M+ P L + ++ + Q + EG ++GFD+++N++L+DA E + + TR
Sbjct: 1 MSLPEILPLEVIDKTINQRVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDETR 60
Query: 68 -----KPLGRILLKGDNITLMMNTGK 88
+ GR+LL G+NI +++ GK
Sbjct: 61 NEKVMQHHGRMLLSGNNIAILVPGGK 86
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 28 QIWLFEQKD-LRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++ L + KD + + G++ FD+++N+VLDD EE+ + RK LG ++++GD + L+
Sbjct: 15 RLVLIKTKDSVSLRGKLRSFDQHLNIVLDDTEEIRGDGSVRK-LGTVVIRGDTVVLI 70
>gi|268323608|emb|CBH37196.1| putative snRNP Sm-like protein [uncultured archaeon]
Length = 102
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P++++ + L+S ++I + G + G+D +MNLVL DAEE+ ++ +G
Sbjct: 9 KPLDVLNKSLRSPVIVRI----RGAREFRGTLEGYDLHMNLVLSDAEELDGDAIVKELMG 64
Query: 72 RILLKGDNITLMMNTGK 88
IL++GDN+ + T K
Sbjct: 65 EILVRGDNVVYISPTVK 81
>gi|154275866|ref|XP_001538778.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413851|gb|EDN09216.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 104
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
G ++GFD+Y+N+VL+D E + K L +ILL G+NI +++ G+
Sbjct: 48 EFSGTLLGFDDYVNMVLEDVTEFDYTGSQTK-LSKILLNGNNICMLIPGGE 97
>gi|399218089|emb|CCF74976.1| unnamed protein product [Babesia microti strain RI]
Length = 87
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE--VHIKKNTRKPL 70
P L + ++W+ + D ++G + GFD+YMN+ D +E + +T + +
Sbjct: 8 PCYLPLALVDKCIGNRMWIIMKNDKELDGILCGFDDYMNMASKDVKEYTYSPQGHTVENI 67
Query: 71 GRILLKGDNITLMMNTGK 88
+ LL G+NI +++ GK
Sbjct: 68 DKCLLNGNNIVMLIPRGK 85
>gi|354459632|pdb|3SWN|A Chain A, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459635|pdb|3SWN|D Chain D, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459638|pdb|3SWN|P Chain P, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459641|pdb|3SWN|S Chain S, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
Length = 82
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S +W+ + + G ++GFD+Y+N+VL D E +
Sbjct: 9 PLELIDKCIGS----NLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 64
Query: 73 ILLKGDNITLMMNTGK 88
+LL G+ + +++ GK
Sbjct: 65 MLLNGNGMCMLIPGGK 80
>gi|19113165|ref|NP_596373.1| U6 snRNP-associated protein Lsm5 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74626712|sp|O42978.2|LSM5_SCHPO RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|4539252|emb|CAA16849.2| U6 snRNP-associated protein Lsm5 (predicted) [Schizosaccharomyces
pombe]
Length = 80
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S +W+ + + G ++GFD+Y+N+VL D E +
Sbjct: 7 PLELIDKCIGS----NLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62
Query: 73 ILLKGDNITLMMNTGK 88
+LL G+ + +++ GK
Sbjct: 63 MLLNGNGMCMLIPGGK 78
>gi|407461851|ref|YP_006773168.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045473|gb|AFS80226.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 75
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
I+G + FD +MNL L++AE+V +K PLG++LL+GDNI
Sbjct: 27 IQGVLQDFDIHMNLTLENAEDVSEEK--PDPLGKVLLRGDNI 66
>gi|156086956|ref|XP_001610885.1| snRNP Sm-like protein [Babesia bovis T2Bo]
gi|154798138|gb|EDO07317.1| snRNP Sm-like protein, putative [Babesia bovis]
Length = 87
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ L+ + L +K +W+ + + I G + GFD+YMN+VLDD E K + L
Sbjct: 12 PLALVDKCLGTK----VWIIMKGEKEITGVLRGFDDYMNVVLDDVTEYTFKPTGVETTEL 67
Query: 71 GRILLKGDNITLMM 84
L+ G NI +++
Sbjct: 68 KDALVNGTNIAMIV 81
>gi|332026604|gb|EGI66713.1| U6 snRNA-associated Sm-like protein LSm5 [Acromyrmex echinatior]
Length = 91
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
AS P+ L+ + + S RI I + + D I G + GFD+++N++L+D E
Sbjct: 3 ASVSTNPSTLLPLELVDKCIGS--RIHIIM--KNDKEIVGTLQGFDDFVNMLLEDVTESE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLMMNTGK 88
R+ L +ILL G NIT+++ G+
Sbjct: 59 ATPEGRRVTKLDQILLNGSNITMLVPGGE 87
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 79
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87
++G + +D+++NL+L+ AEE+ K +PLG +LL+GDN+ + G
Sbjct: 32 EVKGILTSYDQHLNLILEKAEELEGK--VSRPLGLVLLRGDNVIAVSPAG 79
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + G+D++MN+VL+D +E+ I +NT+ LG I+++GD+I ++
Sbjct: 28 LRGLLKGYDQHMNIVLEDTDEL-IDENTQNKLGTIVVRGDSIVMI 71
>gi|406861058|gb|EKD14114.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 59
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 QKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITL 82
+ D G ++GFD+Y+N+VL+D E N K L +ILL G+NI +
Sbjct: 2 KGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNHTK-LSKILLNGNNICM 49
>gi|290999453|ref|XP_002682294.1| predicted protein [Naegleria gruberi]
gi|284095921|gb|EFC49550.1| predicted protein [Naegleria gruberi]
Length = 103
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 1 MASTKVQRIMT--QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 58
M++T + + QP+ LI + + S I++ + D + G + GFD+Y+N++LD+
Sbjct: 1 MSTTNTENTIPIIQPLELIDKCIGS----SIFVLMKDDKELVGTLRGFDDYINMILDNVT 56
Query: 59 EVHIKKN----TRKPLGRILLKGDNITLM 83
E ++ T L I+L G+N+ ++
Sbjct: 57 EYSYSEDGSSRTESKLPSIILNGNNVAIL 85
>gi|124809480|ref|XP_001348585.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|23497482|gb|AAN37024.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 59
P+ L+ + + SK IW+ + D I G+++GFDEY+N+VL+D E
Sbjct: 12 PLALMDKCIGSK----IWIMMKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>gi|161527857|ref|YP_001581683.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339158|gb|ABX12245.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 80
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
++G + FD +MNL L++AE+V +K P+G++LL+GDNI
Sbjct: 30 VQGTLKDFDIHMNLTLENAEDVSEEK--PNPIGKVLLRGDNI 69
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + +D++MNLVL D+EE+ + K LG I+++GDN+ L+
Sbjct: 27 VRGTLRSYDQHMNLVLSDSEEIQ-SDGSGKKLGTIVIRGDNVILI 70
>gi|332157748|ref|YP_004423027.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
gi|331033211|gb|AEC51023.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
Length = 75
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I R L + + +K GR+IG+D ++N+VL DAE + + +K G
Sbjct: 4 RPLDVIHRSLDK----DVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKK-YG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>gi|291226439|ref|XP_002733197.1| PREDICTED: LSM5 homolog, U6 small nuclear RNA associated-like
[Saccoglossus kowalevskii]
Length = 91
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E R+ L
Sbjct: 14 PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVVEFENTPEGRRVTKL 69
Query: 71 GRILLKGDNITLMM 84
+ILL G+NIT+++
Sbjct: 70 EQILLNGNNITMLI 83
>gi|307178103|gb|EFN66930.1| U6 snRNA-associated Sm-like protein LSm5 [Camponotus floridanus]
Length = 91
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G + GFD+++N++L+D E R+ L
Sbjct: 14 PLELVDKCIGS--RIHIIM--KNDKEIVGTLQGFDDFVNMLLEDVTESEATPEGRRVTKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G NIT+++ G+
Sbjct: 70 DQILLNGSNITMLVPGGE 87
>gi|255080076|ref|XP_002503618.1| predicted protein [Micromonas sp. RCC299]
gi|226518885|gb|ACO64876.1| predicted protein [Micromonas sp. RCC299]
Length = 88
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 11 TQPINLIFRFLQSKA-RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
T P L+ L K +IW+ + + + G + GFD Y+N+VL+D E + R+
Sbjct: 3 TNPSQLLPSELVDKCVGSRIWVIMKGEKEMVGTLRGFDVYVNMVLEDVIEYEMTPEGRRE 62
Query: 70 --LGRILLKGDNITLMMNTG 87
L +ILL G+NI L++ G
Sbjct: 63 TKLDQILLNGNNIALLVPGG 82
>gi|323449072|gb|EGB04963.1| hypothetical protein AURANDRAFT_9330 [Aureococcus
anophagefferens]
Length = 72
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ L+ + + S+ IW+ + D + G + GFDEY VLDD E T+ L +
Sbjct: 4 PLELVDKCIGSR----IWVIMKGDKEVVGTLRGFDEY---VLDDVTEYCDGAKTQ--LDQ 54
Query: 73 ILLKGDNITLMMNTG 87
ILL G+N+++M+ G
Sbjct: 55 ILLNGNNVSMMVPGG 69
>gi|6320994|ref|NP_011073.1| Lsm5p [Saccharomyces cerevisiae S288c]
gi|731523|sp|P40089.1|LSM5_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|603386|gb|AAB64673.1| Yer146wp [Saccharomyces cerevisiae]
gi|45269457|gb|AAS56109.1| YER146W [Saccharomyces cerevisiae]
gi|151944864|gb|EDN63123.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190405705|gb|EDV08972.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
gi|256272052|gb|EEU07064.1| Lsm5p [Saccharomyces cerevisiae JAY291]
gi|259146073|emb|CAY79333.1| Lsm5p [Saccharomyces cerevisiae EC1118]
gi|285811779|tpg|DAA07807.1| TPA: Lsm5p [Saccharomyces cerevisiae S288c]
gi|349577808|dbj|GAA22976.1| K7_Lsm5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299849|gb|EIW10941.1| Lsm5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 93
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-------KKN 65
P+ +I + + K I + Q + EG ++GFD+++N++L+DA E I +
Sbjct: 8 PLEVIDKTINQKVLIVL----QSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEK 63
Query: 66 TRKPLGRILLKGDNITLMMNTGK 88
+ GR+LL G+NI +++ GK
Sbjct: 64 VMQHHGRMLLSGNNIAILVPGGK 86
>gi|307197393|gb|EFN78665.1| U6 snRNA-associated Sm-like protein LSm5 [Harpegnathos saltator]
Length = 91
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G + GFD+++N++L+D E R+ L
Sbjct: 14 PLELVDKCIGS--RIHIIM--KNDKEIVGTLQGFDDFVNMLLEDVTESEATPEGRRVTKL 69
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G NIT+++ G+
Sbjct: 70 DQILLNGSNITMLVPGGE 87
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 34 QKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ D+ + G++ +D+++N+VLDD EE+ +TRK LG ++++GD + +
Sbjct: 22 KDDITLRGKLRSYDQHLNIVLDDVEEIGEGGSTRK-LGTVVIRGDTVVFI 70
>gi|28948591|pdb|1M8V|A Chain A, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948592|pdb|1M8V|B Chain B, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948593|pdb|1M8V|C Chain C, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948594|pdb|1M8V|D Chain D, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948595|pdb|1M8V|E Chain E, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948596|pdb|1M8V|F Chain F, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948597|pdb|1M8V|G Chain G, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948598|pdb|1M8V|H Chain H, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948599|pdb|1M8V|I Chain I, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948600|pdb|1M8V|J Chain J, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948601|pdb|1M8V|K Chain K, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948602|pdb|1M8V|L Chain L, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948603|pdb|1M8V|M Chain M, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948604|pdb|1M8V|N Chain N, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
Length = 77
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I R L + + +K GR+IG+D ++N+VL DAE + K G
Sbjct: 6 RPLDVIHRSLDK----DVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQ-DGEVVKRYG 60
Query: 72 RILLKGDNITLMMNT 86
+I+++GDN+ + T
Sbjct: 61 KIVIRGDNVLAISPT 75
>gi|340506197|gb|EGR32392.1| lsm5 protein, putative [Ichthyophthirius multifiliis]
Length = 83
Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI + + K IW+ + + + G + GFD++ N+VLD+A+E + + +
Sbjct: 8 PLELIDKCIGHK----IWILLKNNKEVVGTLRGFDDFFNMVLDEAKEYQFQNGIKNQTNI 63
Query: 71 GRILLKGDNITLMMNTGK 88
ILL G +ITL++ G+
Sbjct: 64 DSILLNGAHITLIVPGGE 81
>gi|397624738|gb|EJK67493.1| hypothetical protein THAOC_11464 [Thalassiosira oceanica]
Length = 478
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEV 60
S++ + + P++L++ L +++R+++ + +R + G+++ FD++ N+++ DA+EV
Sbjct: 228 SSRYESPKSGPLSLLYSILATRSRVRVMVRYVDCIRGVLTGQLVAFDKHFNMIIRDADEV 287
Query: 61 HIKKNTR 67
+ + TR
Sbjct: 288 YTGRVTR 294
>gi|329765753|ref|ZP_08257322.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137819|gb|EGG42086.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 76
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
+ G + FD +MNL LD+AE+ I N LGRILL+GDNI
Sbjct: 27 VRGSLQDFDIHMNLTLDNAED--ISDNKVVSLGRILLRGDNI 66
>gi|50308811|ref|XP_454410.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643545|emb|CAG99497.1| KLLA0E10209p [Kluyveromyces lactis]
Length = 84
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 34/48 (70%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
G ++GFD+Y+N+V+++A E + ++ G++LL G+NI +++ GK
Sbjct: 33 GTLVGFDDYVNVVIENAVEYLEDQEIKRFQGKMLLTGNNIAMLIPGGK 80
>gi|14520857|ref|NP_126332.1| small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
gi|10720266|sp|Q9V0Y8.1|RUXX_PYRAB RecName: Full=Putative snRNP Sm-like protein
gi|27573606|pdb|1H64|1 Chain 1, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573607|pdb|1H64|2 Chain 2, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573608|pdb|1H64|A Chain A, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573609|pdb|1H64|B Chain B, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573610|pdb|1H64|C Chain C, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573611|pdb|1H64|D Chain D, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573612|pdb|1H64|E Chain E, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573613|pdb|1H64|F Chain F, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573614|pdb|1H64|G Chain G, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573615|pdb|1H64|H Chain H, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573616|pdb|1H64|I Chain I, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573617|pdb|1H64|J Chain J, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573618|pdb|1H64|K Chain K, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573619|pdb|1H64|L Chain L, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573620|pdb|1H64|M Chain M, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573621|pdb|1H64|N Chain N, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573622|pdb|1H64|O Chain O, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573623|pdb|1H64|P Chain P, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573624|pdb|1H64|Q Chain Q, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573625|pdb|1H64|R Chain R, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573626|pdb|1H64|S Chain S, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573627|pdb|1H64|T Chain T, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573628|pdb|1H64|U Chain U, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573629|pdb|1H64|V Chain V, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573630|pdb|1H64|W Chain W, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573631|pdb|1H64|X Chain X, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573632|pdb|1H64|Y Chain Y, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573633|pdb|1H64|Z Chain Z, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|5458074|emb|CAB49563.1| Heptameric Sm/Lsm protein [Pyrococcus abyssi GE5]
gi|380741401|tpe|CCE70035.1| TPA: small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
Length = 75
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I R L + + +K GR+IG+D ++N+VL DAE + K G
Sbjct: 4 RPLDVIHRSLDK----DVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQ-DGEVVKRYG 58
Query: 72 RILLKGDNITLMMNT 86
+I+++GDN+ + T
Sbjct: 59 KIVIRGDNVLAISPT 73
>gi|393247655|gb|EJD55162.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 85
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IKKNTRK--P 69
P+ LI R + S+ IW+ + + G ++GFD+++N+VL+D E + +RK
Sbjct: 7 PLELIDRCIGSR----IWVVMKTEREFTGTLLGFDDFVNMVLEDVTEYETLPDGSRKKTK 62
Query: 70 LGRILLKGDNITLMM 84
L + LL G+NI +++
Sbjct: 63 LRQTLLNGNNICILI 77
>gi|366987137|ref|XP_003673335.1| hypothetical protein NCAS_0A03890 [Naumovozyma castellii CBS
4309]
gi|342299198|emb|CCC66947.1| hypothetical protein NCAS_0A03890 [Naumovozyma castellii CBS
4309]
Length = 90
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 29 IWLF--EQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR-------KPLGRILLKGDN 79
+W+ Q + G +IGFD+++N++++DA E I N + GR+LL G+N
Sbjct: 21 VWIILQSQPNREFTGTLIGFDDFVNVIIEDAVEWGIDPNDDFKEIIIMEHHGRMLLSGNN 80
Query: 80 ITLMMNTGK 88
I +++ GK
Sbjct: 81 IAMLVPGGK 89
>gi|68482073|ref|XP_715054.1| potential RNA processing complex subunit Lsm5 [Candida albicans
SC5314]
gi|46436659|gb|EAK96018.1| potential RNA processing complex subunit Lsm5 [Candida albicans
SC5314]
Length = 119
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 8/72 (11%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ +I R + + R+ + D G++IGFD+Y+N+VL+D EV + P+ +
Sbjct: 54 PLEVIDRSVGKRVRVLM----TGDKEFNGKLIGFDDYVNMVLEDVTEV----DGGAPIKK 105
Query: 73 ILLKGDNITLMM 84
+LL G +I +++
Sbjct: 106 MLLNGGHIAMIV 117
>gi|303271251|ref|XP_003054987.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462961|gb|EEH60239.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 88
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA+ Q + P L+ R + S+ IW+ + + + G + GFD Y+N+VL+D E
Sbjct: 1 MATNPSQLL---PSELVDRCVGSR----IWVIMKGEKEMVGTLRGFDVYVNMVLEDVIEY 53
Query: 61 HIKKNTRK--PLGRILLKGDNITLMMNTG 87
+ ++ L +ILL G+NI L++ G
Sbjct: 54 EMTPEGKRVTKLDQILLNGNNIALLVPGG 82
>gi|156088647|ref|XP_001611730.1| Sm domain containing protein [Babesia bovis]
gi|154798984|gb|EDO08162.1| Sm domain containing protein [Babesia bovis]
Length = 159
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
Query: 19 RFLQSKARIQIWLFEQKDLR-IEGRIIGFDEYMNLVLDDAEEVHIKKNT---------RK 68
++LQ + R+ I KD R G I FD++MNLVL D EE I K ++
Sbjct: 10 QWLQYRVRVAI-----KDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVELKR 64
Query: 69 PLGRILLKGDNI 80
LG I+L+G+NI
Sbjct: 65 TLGFIMLRGENI 76
>gi|403372169|gb|EJY85976.1| Small nuclear ribonucleoprotein G, putative [Oxytricha trifallax]
Length = 709
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
+ G + G+D+++N+VLD+A E+ I K+ ++ LG I+++G+++ + N K
Sbjct: 29 VAGVLKGYDQFLNIVLDNAIEI-INKDEKRELGTIVIRGNSVVMWENLDK 77
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + +D++MNLVL D+EE+ + K LG I+++GDN+ L+
Sbjct: 27 VRGMLRSYDQHMNLVLSDSEEIQ-SDGSGKKLGTIVIRGDNVILI 70
>gi|365987129|ref|XP_003670396.1| hypothetical protein NDAI_0E03360 [Naumovozyma dairenensis CBS
421]
gi|343769166|emb|CCD25153.1| hypothetical protein NDAI_0E03360 [Naumovozyma dairenensis CBS
421]
Length = 88
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 29 IWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL-----GRILLKGDNITLM 83
+W+ Q G +IGFD+++N++++DA E + + + GR+LL G+ I ++
Sbjct: 21 VWIILQSQREFTGTLIGFDDFVNVIIEDAVEWVLNEEGEDEMIMTHHGRMLLSGNTIAML 80
Query: 84 MNTGK 88
+ GK
Sbjct: 81 VPGGK 85
>gi|432331010|ref|YP_007249153.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432137719|gb|AGB02646.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 78
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
PI +F + SK ++I + + +++GR++ DEY+N+ +D+ E ++ + LG
Sbjct: 8 PIKKVFALVDSKISVEI---KDEGRKLQGRLVAVDEYLNIHMDETIE-YVDNQRGRSLGT 63
Query: 73 ILLKGDNI 80
++++G+NI
Sbjct: 64 VVIRGNNI 71
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + +D++MNLVL D+EE+ + K LG I+++GDN+ L+
Sbjct: 29 EVRGMLRSYDQHMNLVLSDSEEIQ-SDGSGKKLGTIVIRGDNVILI 73
>gi|355571227|ref|ZP_09042479.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825615|gb|EHF09837.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 78
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
PI +F + S+ ++I ++K ++GR++ DEY+N+ +DD E ++ + LG
Sbjct: 8 PIKKVFSLVDSRIIVEIKDDQRK---LQGRLVAVDEYLNIHMDDTTE-YVNNVRGRTLGT 63
Query: 73 ILLKGDNI 80
++++G+NI
Sbjct: 64 VVIRGNNI 71
>gi|219852145|ref|YP_002466577.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219546404|gb|ACL16854.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 77
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRI-EGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
PI +F + SK ++I + + RI EGR++ DEY+N+ +D E + + ++ LG
Sbjct: 8 PIKKVFALVDSKISVEI----KDEGRILEGRLVAVDEYLNIHMD--ETIELNAAQKRNLG 61
Query: 72 RILLKGDNI 80
++++G+NI
Sbjct: 62 TVVIRGNNI 70
>gi|260786161|ref|XP_002588127.1| hypothetical protein BRAFLDRAFT_124953 [Branchiostoma floridae]
gi|229273285|gb|EEN44138.1| hypothetical protein BRAFLDRAFT_124953 [Branchiostoma floridae]
Length = 874
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 11 TQPINLIFRFLQSKARIQIWLFEQ--KDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK 68
+QP L+ + S A +++ Q + ++ G + GFD +MNLV+D E V ++ N R+
Sbjct: 795 SQPTVLLMAVMWSCAAVKLAAEVQLNGNRKVSGILRGFDPFMNLVID--ECVELRGNERQ 852
Query: 69 PLGRILLKGDNITLM 83
+G ++++G++I ++
Sbjct: 853 SIGMVVIRGNSIIML 867
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + +D++MNLVL D+EE+ + K LG I+++GDN+ L+
Sbjct: 31 EVRGMLRSYDQHMNLVLSDSEEIQ-SDGSGKKLGTIVIRGDNVILI 75
>gi|156100461|ref|XP_001615958.1| U6 snRNA-associated Sm-like protein LSm5 [Plasmodium vivax Sal-1]
gi|221059589|ref|XP_002260440.1| small nuclear ribonuclear protein [Plasmodium knowlesi strain H]
gi|148804832|gb|EDL46231.1| U6 snRNA-associated Sm-like protein LSm5, putative [Plasmodium
vivax]
gi|193810513|emb|CAQ41707.1| small nuclear ribonuclear protein, putative [Plasmodium knowlesi
strain H]
gi|389585422|dbj|GAB68153.1| U6 snRNA-associated Sm-like protein LSm5 [Plasmodium cynomolgi
strain B]
Length = 101
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 59
P+ L+ + + SK IW+ + D I G+++GFDEY+N+VL+D E
Sbjct: 12 PLALMDKCIGSK----IWVMLKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>gi|325187598|emb|CCA22134.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 67
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 34 QKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTG 87
Q D G + GFD+Y+N+VLDD E + + ++ L ++LL G+N+ +++ G
Sbjct: 2 QGDKEFVGTLRGFDDYVNMVLDDVTEFELTPSGKRQIALDQVLLNGNNVCMLIPGG 57
>gi|254565605|ref|XP_002489913.1| hypothetical protein [Komagataella pastoris GS115]
gi|238029709|emb|CAY67632.1| hypothetical protein PAS_chr1-1_0487 [Komagataella pastoris GS115]
gi|328350324|emb|CCA36724.1| U6 snRNA-associated Sm-like protein LSm7 [Komagataella pastoris CBS
7435]
Length = 156
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
G + G+D+ MNLVLDDAEE+ +K ++ LGR++++G
Sbjct: 91 GCLKGYDQLMNLVLDDAEEI-LKSTEKRTLGRVIVRG 126
>gi|392580035|gb|EIW73162.1| hypothetical protein TREMEDRAFT_24108, partial [Tremella
mesenterica DSM 1558]
Length = 79
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 86
+ G + GFD+ MNLV+DD E + LG ++L+G NITL++ T
Sbjct: 29 VTGTLKGFDQLMNLVMDDVVEEFENGMPSRSLGLVVLRGPNITLILPT 76
>gi|389610013|dbj|BAM18618.1| small nuclear ribonucleoprotein, core [Papilio xuthus]
Length = 95
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D + G + GFD+++N++LDD E RK L
Sbjct: 13 PLELVDKCIGS--RIHIIM--KNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKL 68
Query: 71 GRILLKGDNITLMMNTGK 88
+ILL G+NI +++ G+
Sbjct: 69 DQILLNGNNIAMLVPGGE 86
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + +D +MNLVL+++EEV +TRK +G I+++GDN+ L+
Sbjct: 31 VRGTLKSYDMHMNLVLENSEEVMSDGSTRK-VGTIIIRGDNVILV 74
>gi|323309313|gb|EGA62531.1| Lsm5p [Saccharomyces cerevisiae FostersO]
Length = 116
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-------KKN 65
P+ +I + + K I + Q + EG ++GFD+++N++L+DA E I +
Sbjct: 8 PLEVIDKTINQKVLIVL----QSNREFEGTLVGFDDFVNVILEDAVEWLIDPEXESRNEK 63
Query: 66 TRKPLGRILLKGDNITLMMNTGK 88
+ GR+LL G+NI +++ GK
Sbjct: 64 VMQHHGRMLLSGNNIAILVPGGK 86
>gi|440302928|gb|ELP95234.1| small nuclear ribonucleoprotein G, putative [Entamoeba invadens
IP1]
Length = 88
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRK-PLGRILLKGDNI 80
G + GFDEY+NLVLDDA + +N +K LG+IL++G+++
Sbjct: 35 GVLRGFDEYLNLVLDDAFDASHPENPQKIQLGQILIRGNSV 75
>gi|323305294|gb|EGA59041.1| Lsm5p [Saccharomyces cerevisiae FostersB]
Length = 116
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-----KK 64
M+ P L + ++ + Q + EG ++GFD+++N++L+DA E I +
Sbjct: 1 MSLPEILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESR 60
Query: 65 NTR--KPLGRILLKGDNITLMMNTGK 88
N + + GR+LL G+NI +++ GK
Sbjct: 61 NGKVMQHHGRMLLSGNNIAILVPGGK 86
>gi|226467448|emb|CAX69600.1| U6 snRNA-associated Sm-like protein LSm5 [Schistosoma japonicum]
Length = 87
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D + G ++GFD Y+N+VL D E ++ L
Sbjct: 10 PLELVDKCIGS--RIHIIM--KNDKEMVGTLLGFDGYVNMVLVDVTEFEFTAQGKRITKL 65
Query: 71 GRILLKGDNITLMMNTGK 88
ILL G NI +M+ G+
Sbjct: 66 SHILLNGSNIAMMVPGGE 83
>gi|225711834|gb|ACO11763.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
gi|225714162|gb|ACO12927.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
gi|290562395|gb|ADD38594.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
Length = 79
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
R+Q+ L +++ EG + G+D +MNLVL++ E K+ R P+G I+++G++I ++
Sbjct: 18 RVQLKLNASRNM--EGILRGYDPFMNLVLEEGIET-TKQGHRNPVGTIVIRGNSIVML 72
>gi|389852826|ref|YP_006355060.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
gi|388250132|gb|AFK22985.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
Length = 76
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I + L + + +K GR+IG+D ++N+VL DAE + + +K G
Sbjct: 4 RPLDVIHKSLDK----DVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKK-YG 58
Query: 72 RILLKGDNITLMMNT 86
+I+++GDN+ + T
Sbjct: 59 KIVIRGDNVLAISPT 73
>gi|288560538|ref|YP_003424024.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
gi|288543248|gb|ADC47132.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
Length = 77
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT 66
Q+ + +P++ + + + S + I L +++ R G + FD +MNLVLDDAEE+ K
Sbjct: 4 QQNVQRPLDALGKAVNSP--VLIKLKGEREFR--GILKSFDLHMNLVLDDAEELE-KGEV 58
Query: 67 RKPLGRILLKGDNIT 81
+ LG +L++GDNI
Sbjct: 59 LRRLGTVLIRGDNIV 73
>gi|298674160|ref|YP_003725910.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298287148|gb|ADI73114.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 72
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 81
G + G+D +MNLVLD+AEE++ + RK LG ++++GDN+
Sbjct: 29 GELQGYDVHMNLVLDNAEELNDGEIVRK-LGSVVIRGDNVV 68
>gi|328772543|gb|EGF82581.1| hypothetical protein BATDEDRAFT_9366, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 69
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 14 INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT--RKPLG 71
+ L+ R + SK +W+ + D G ++GFD+++N+VL+D E + +
Sbjct: 1 VELVDRCVGSK----LWVIMKGDKEFTGTLLGFDDFVNMVLEDVTEYEMTSTGIRTEHFD 56
Query: 72 RILLKGDNITLMM 84
++LL G+NI ++M
Sbjct: 57 QLLLNGNNICMVM 69
>gi|344231234|gb|EGV63116.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 88
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA + Q+ +P++LI R+ Q + + L ++++ G++ G+D + N+VL DA E
Sbjct: 1 MADVQPQQKQEEPLDLI-RY-QLDETVLVKLRGAREMK--GKLQGYDSHCNMVLSDATEY 56
Query: 61 HIKKNTRKPLGR----ILLKGDNITLM 83
+N KP G+ + ++GD++ L+
Sbjct: 57 IYAENQDKPQGKSTDMVFIRGDSVILI 83
>gi|350416213|ref|XP_003490876.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Bombus
impatiens]
Length = 223
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 4 TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVH 61
K+QR P+ ++ +++S+ R++++ + +R +E + FD++ NL L+D EV
Sbjct: 105 AKMQRAFG-PLGMLHGYMESRTRVKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEVW 163
Query: 62 IKKNTRK 68
+K RK
Sbjct: 164 TRKVKRK 170
>gi|126644023|ref|XP_001388172.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117249|gb|EAZ51349.1| hypothetical protein cgd1_2690 [Cryptosporidium parvum Iowa II]
Length = 67
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 37 LRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
+R +G ++ FDEYMN++L+D EE I + LG++ ++ +N+
Sbjct: 1 MRYKGTLVSFDEYMNILLNDCEE-WIDNTKKGTLGKVFIRCNNV 43
>gi|66804949|ref|XP_636207.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
gi|74852215|sp|Q54HH8.1|SMDL_DICDI RecName: Full=Small nuclear ribonucleoprotein Sm D-like protein
gi|60464569|gb|EAL62706.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
Length = 257
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVH-------IK 63
P++L+ R L+SK++I++ + +R G II FD++MN++L D EE +
Sbjct: 166 PLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKSLPST 225
Query: 64 KNTRKPL--------GRILLKGDNITLMM 84
+N +P+ G++ +KGD + ++
Sbjct: 226 RNQNQPIQPKIKRYYGQLFIKGDTVVSVI 254
>gi|170291026|ref|YP_001737842.1| Sm ribonucleoprotein core-like protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175106|gb|ACB08159.1| Sm ribonucleoprotein core-like protein [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 80
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
R+L + + + + + G + +D ++NL+LD+AEE+ ++ N +K R+L++G
Sbjct: 5 MRYLAKSMNGSVLVILKNGVYVRGILKSYDNHLNLILDNAEEI-MEGNAKKLGKRVLIRG 63
Query: 78 DNI 80
DN+
Sbjct: 64 DNV 66
>gi|119482644|ref|XP_001261350.1| small nuclear ribonucleoprotein (LSM5), putative [Neosartorya
fischeri NRRL 181]
gi|119409505|gb|EAW19453.1| small nuclear ribonucleoprotein (LSM5), putative [Neosartorya
fischeri NRRL 181]
Length = 61
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 34 QKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
+ D G ++GFD+Y+N+VL+D E K L +ILL G+NI +++ G+
Sbjct: 2 KGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGAQVK-LPKILLNGNNICMLIPGGE 55
>gi|315230063|ref|YP_004070499.1| snRNP Sm-like protein [Thermococcus barophilus MP]
gi|315183091|gb|ADT83276.1| putative snRNP Sm-like protein [Thermococcus barophilus MP]
Length = 76
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I R L + + +K G++IG+D ++N+VL DA+ + + T+K G
Sbjct: 4 RPLDVIHRSLDK----DVLVILKKGFEFRGKLIGYDIHLNVVLADAQLIEGGEVTKK-YG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>gi|67624211|ref|XP_668388.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659578|gb|EAL38148.1| hypothetical protein Chro.10304 [Cryptosporidium hominis]
Length = 67
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 37 LRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
+R +G ++ FDEYMN++L+D EE I + LG++ ++ +N+
Sbjct: 1 MRYKGTLVSFDEYMNILLNDCEE-WIDNTKKGTLGKVFIRCNNV 43
>gi|403221959|dbj|BAM40091.1| small nuclear ribonucleoprotein associated protein b [Theileria
orientalis strain Shintoku]
Length = 153
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 17/70 (24%)
Query: 26 RIQIWLFEQKDLRIE--------GRIIGFDEYMNLVLDDAEEVHI-------KKNTRKPL 70
R+Q WL Q ++R+ G ++ FD +MNLVL D EE + + ++ L
Sbjct: 7 RMQHWL--QYNVRVTLKDNRKFVGTLVAFDRHMNLVLSDCEEFRMTLGKDKNRTEIKRTL 64
Query: 71 GRILLKGDNI 80
G +LL+G+NI
Sbjct: 65 GFVLLRGENI 74
>gi|410671979|ref|YP_006924350.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
gi|409171107|gb|AFV24982.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
Length = 72
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 81
G++ G+D +MNLVLD+AEE+ RK LG ++++GDNI
Sbjct: 29 GKLQGYDVHMNLVLDEAEELKEGDIVRK-LGSVVIRGDNIV 68
>gi|225710716|gb|ACO11204.1| Small nuclear ribonucleoprotein G [Caligus rogercresseyi]
Length = 79
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
R+Q+ L +++ EG + G+D +MNLVL++ E K+ R P+G ++++G++I ++
Sbjct: 18 RVQLKLNASRNM--EGILRGYDPFMNLVLEEGIET-TKQGHRNPVGTVVIRGNSIVML 72
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + +D++MNLVL D+EE+ + K +G I+++GDN+ L+
Sbjct: 26 EVRGLLKSYDQHMNLVLSDSEEIQ-SDGSGKKIGTIVIRGDNVILI 70
>gi|149621318|ref|XP_001518812.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ornithorhynchus anatinus]
Length = 155
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Query: 26 RIQIWLFEQKDLRIE------GRIIGFDEYMNLVLDDAEEVHIKKN--------TRKPLG 71
R+Q WL + + I+ G I FD +MNLVL D EE + N ++ LG
Sbjct: 7 RMQQWLHYRVRVSIKDGRKFVGTFIAFDRHMNLVLADCEEFRLTLNKGLKEPIEVKRTLG 66
Query: 72 RILLKGDNI 80
ILL+G+NI
Sbjct: 67 FILLRGENI 75
>gi|300123719|emb|CBK24991.2| unnamed protein product [Blastocystis hominis]
Length = 77
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+EG + G+D+ MN+VL+D EV + +N ++ +GR++++G+ I M
Sbjct: 27 VEGVLRGYDQMMNIVLEDVYEV-VNENEKQEMGRVVIRGNGIIQM 70
>gi|147921633|ref|YP_684550.1| small nuclear ribonucleoprotein [Methanocella arvoryzae MRE50]
gi|121685694|sp|Q0W8R9.1|RUXX_UNCMA RecName: Full=Putative snRNP Sm-like protein
gi|110619946|emb|CAJ35224.1| putative small nuclear ribonucleoprotein (snRNP) Sm-like protein
[Methanocella arvoryzae MRE50]
Length = 72
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 81
G + G+D +MNLVLD+AEE+ + +RK LG I+++GD +
Sbjct: 29 GELQGYDMHMNLVLDNAEELKENEASRK-LGTIIVRGDTVV 68
>gi|405122533|gb|AFR97299.1| hypothetical protein CNAG_04914 [Cryptococcus neoformans var.
grubii H99]
Length = 78
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+++L Q +I G + G+D ++NLV+D+A E + RKP G ++++G++++ M
Sbjct: 16 RLFLHLQGGRQISGVLRGYDMFLNLVVDNAFE-ELGGGQRKPCGMVVIRGNSVSAM 70
>gi|340711443|ref|XP_003394285.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Bombus
terrestris]
Length = 223
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 4 TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVH 61
K+QR P+ ++ +++S+ R++++ + +R +E + FD++ NL L+D EV
Sbjct: 105 AKMQRAFG-PLGMLHGYMESRTRVKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEVW 163
Query: 62 IKKNTRK 68
+K RK
Sbjct: 164 TRKVKRK 170
>gi|336373417|gb|EGO01755.1| hypothetical protein SERLA73DRAFT_177234 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386246|gb|EGO27392.1| hypothetical protein SERLADRAFT_460722 [Serpula lacrymans var.
lacrymans S7.9]
Length = 77
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++++ Q R+ G + G+D ++NLV+DDA E + P+G ++++G+++T M
Sbjct: 16 KLFVHLQGGRRVSGTLRGYDLFLNLVIDDALE-ETTPAQKHPIGTVVIRGNSVTSM 70
>gi|336477290|ref|YP_004616431.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM
4017]
gi|335930671|gb|AEH61212.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 72
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
G + G+D +MNLVLD+AEE+ + RK LG ++++GDN+ +
Sbjct: 29 GELQGYDVHMNLVLDNAEELKDGEIVRK-LGSVVIRGDNVVYL 70
>gi|397573274|gb|EJK48624.1| hypothetical protein THAOC_32562 [Thalassiosira oceanica]
gi|397614325|gb|EJK62729.1| hypothetical protein THAOC_16646 [Thalassiosira oceanica]
Length = 95
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL-- 70
P+ LI + + S IW+ + + G + GFD+Y+NLVLDDA E + +
Sbjct: 7 PLELIDKAIGSP----IWILMRGQTELTGILRGFDDYVNLVLDDAVEYSPDPRNKSEIVT 62
Query: 71 ----GRILLKGDNITLMMNTGK 88
ILL G+++ +M+ K
Sbjct: 63 KRLETEILLNGNHVAVMVPGSK 84
>gi|66827081|ref|XP_646895.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74859089|sp|Q55EX5.1|LSM5_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm5
gi|60475011|gb|EAL72947.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI + + S+ IW+ + D G ++GFD Y+N+ L D E K L
Sbjct: 18 PLELIEKCIGSR----IWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 71 GRILLKGDNITLMMNTGK 88
ILL G+++ L++ G+
Sbjct: 74 DNILLNGNHVCLLVPGGE 91
>gi|269986972|gb|EEZ93248.1| Like-Sm ribonucleoprotein core [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 78
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR-IEGRIIGFDEYMNLVLDDAEEVHIKK 64
+ ++++P++L+ + A+ ++ L E K+ I G+++ FD ++N+ L++AEE
Sbjct: 2 AENVLSRPLDLL-----NSAKGKMVLVELKNGHAITGKLVAFDVHINVTLENAEEKKDAD 56
Query: 65 NTRKPLGRILLKGDNITLMMNT 86
RK LG + ++GD I L+ T
Sbjct: 57 TLRK-LGNVFIRGDTIILISPT 77
>gi|403170432|ref|XP_003329769.2| small nuclear ribonucleoprotein G [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375168717|gb|EFP85350.2| small nuclear ribonucleoprotein G [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 78
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 39/54 (72%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 81
+++L Q + ++ G + GFD ++NLVLD+A+E ++ ++ +G I+++G++++
Sbjct: 16 RLFLNLQGNRKLSGVLRGFDIFLNLVLDEAQEESLEGGEKRKMGLIVIRGNSVS 69
>gi|402226213|gb|EJU06273.1| like-Sm ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 77
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+++++ Q R+ G + G+D ++NLV+DDA E + +K +G+++++G+++T M
Sbjct: 16 RLFVYIQGGRRVSGVLRGYDIFLNLVVDDAVE-ESGTSGKKHIGQVVIRGNSVTSM 70
>gi|328853199|gb|EGG02339.1| hypothetical protein MELLADRAFT_75479 [Melampsora larici-populina
98AG31]
Length = 78
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 40/54 (74%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 81
+++L Q + ++ G + GFD ++NLVLD+A+E +++ ++ +G ++++G++++
Sbjct: 16 RLFLNLQGNRKLSGVLRGFDIFLNLVLDEAQEENLEGGEKRKMGLVVIRGNSVS 69
>gi|340344218|ref|ZP_08667350.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519359|gb|EGP93082.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 76
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
+ G + FD +MNL L+DAE++ K + LG+ILL+GDNI
Sbjct: 27 VRGNLQDFDVHMNLTLEDAEDISDGKTVK--LGKILLRGDNI 66
>gi|195374175|ref|XP_002046059.1| GM26694 [Drosophila sechellia]
gi|194123247|gb|EDW45290.1| GM26694 [Drosophila sechellia]
Length = 61
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 34 QKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 88
+ D + G ++GFD+++N++LDD E + R+ L +ILL G+NIT+++ G+
Sbjct: 2 KNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITMLVPGGE 58
>gi|134116118|ref|XP_773230.1| hypothetical protein CNBJ0090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255852|gb|EAL18583.1| hypothetical protein CNBJ0090 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 78
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+++L Q +I G + G+D ++NLV+D A E + RKP G ++++G++++ M
Sbjct: 16 RLFLHLQGGRQISGVLRGYDMFLNLVVDSAFE-ELGGGQRKPCGMVVIRGNSVSAM 70
>gi|169860675|ref|XP_001836972.1| hypothetical protein CC1G_00108 [Coprinopsis cinerea
okayama7#130]
gi|116501694|gb|EAU84589.1| hypothetical protein CC1G_00108 [Coprinopsis cinerea
okayama7#130]
Length = 78
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++++ Q ++ G + G+D ++NLV+DDA E + P+G ++++G+++T M
Sbjct: 16 KLFIHLQGGRKVSGTLRGYDLFLNLVIDDAVE-ETTPGQKHPIGTVVIRGNSVTSM 70
>gi|390601213|gb|EIN10607.1| like-Sm ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 77
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++++ Q ++ G + G+D ++NLV+DDA E + PLG ++++G+++T M
Sbjct: 16 KLFVHLQGGRKVSGTLRGYDLFLNLVIDDALE-ETTPAQKHPLGTVVIRGNSVTSM 70
>gi|219851061|ref|YP_002465493.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219545320|gb|ACL15770.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 75
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P++++ + L + I + L ++LR G + G+D +MNLVLD AEEV + +G
Sbjct: 4 RPLDILDQVLNGEPVI-VSLKGDRELR--GVLQGYDVHMNLVLDKAEEV--TDGATQKIG 58
Query: 72 RILLKGDNITLMMNTG 87
++++GDN+ + +G
Sbjct: 59 TLIVRGDNVIYISPSG 74
>gi|71003313|ref|XP_756337.1| hypothetical protein UM00190.1 [Ustilago maydis 521]
gi|46096342|gb|EAK81575.1| hypothetical protein UM00190.1 [Ustilago maydis 521]
Length = 117
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 21/89 (23%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMN--------------LVLDDAE 58
P+ LI + + S IW+ + D G ++GFD+Y+N +VL+D
Sbjct: 24 PLELIDKCIGS----SIWVIMKTDREFSGTLLGFDDYVNAMIDNHSSLAVHADMVLEDVT 79
Query: 59 EVHIKKNTRK---PLGRILLKGDNITLMM 84
E + +K LG+ LL G+NI +++
Sbjct: 80 EYETTPDGKKKKTKLGQTLLNGNNICMLI 108
>gi|444725073|gb|ELW65653.1| 60S ribosomal protein L7 [Tupaia chinensis]
Length = 186
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 22/24 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQ 28
KVQ++M QPI LIFR+LQ+++RIQ
Sbjct: 9 KVQKVMVQPIKLIFRYLQNRSRIQ 32
>gi|58260010|ref|XP_567415.1| hypothetical protein CNJ03360 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57229465|gb|AAW45898.1| hypothetical protein CNJ03360 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 71
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+++L Q +I G + G+D ++NLV+D A E + RKP G ++++G++++ M
Sbjct: 9 RLFLHLQGGRQISGVLRGYDMFLNLVVDSAFE-ELGGGQRKPCGMVVIRGNSVSAM 63
>gi|225463717|ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
[Vitis vinifera]
gi|147774905|emb|CAN61706.1| hypothetical protein VITISV_001610 [Vitis vinifera]
Length = 276
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI------KKN----T 66
+ +++ + R+ I Q ++ G+ + FD +MNLVL D EE KKN
Sbjct: 9 MLQYINYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNEEREE 64
Query: 67 RKPLGRILLKGDNITLMMNTG 87
R+ LG +LL+G+ + M G
Sbjct: 65 RRTLGLVLLRGEEVISMTVEG 85
>gi|393219456|gb|EJD04943.1| U6 snRNA-associated Sm-like protein LSm7 [Fomitiporia mediterranea
MF3/22]
Length = 134
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEE-VHIKKNTRKPLGRILLKGDNITLM 83
+ G + G+D+ +NLVLDD EE +H + ++ LG ++L+G ITL+
Sbjct: 71 VTGILKGYDQLLNLVLDDVEEQLHEPEPRKRSLGLVVLRGPTITLL 116
>gi|134080970|emb|CAK41484.1| unnamed protein product [Aspergillus niger]
Length = 59
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
G ++GFD+Y+N+VL+D E + K L +ILL G+N+ +++ G+
Sbjct: 4 EFAGTLLGFDDYVNMVLEDVTEFDYSGSQVK-LPKILLNGNNVCMLIPGGE 53
>gi|307105649|gb|EFN53897.1| hypothetical protein CHLNCDRAFT_136065 [Chlorella variabilis]
Length = 239
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEE 59
+R+ P+ L+ R+ Q ++R+++ + +R EG ++ FD++MNLVL D EE
Sbjct: 102 AERVQHGPLLLLKRWYQQRSRVRVVTRHARGVRGSSEGLLVAFDKHMNLVLRDVEE 157
>gi|224115254|ref|XP_002332199.1| predicted protein [Populus trichocarpa]
gi|222875306|gb|EEF12437.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI------KKNT---- 66
+ +++ + R+ I Q ++ G+ + FD +MNLVL D EE KKN
Sbjct: 9 MLQYINYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEERE 64
Query: 67 -RKPLGRILLKGDNITLMMNTG 87
R+ LG +LL+G+ + M G
Sbjct: 65 DRRTLGLVLLRGEEVISMTVEG 86
>gi|118482995|gb|ABK93409.1| unknown [Populus trichocarpa]
Length = 286
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI------KKNT---- 66
+ +++ + R+ I Q ++ G+ + FD +MNLVL D EE KKN
Sbjct: 9 MLQYINYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEERE 64
Query: 67 -RKPLGRILLKGDNITLMMNTG 87
R+ LG +LL+G+ + M G
Sbjct: 65 DRRTLGLVLLRGEEVISMTVEG 86
>gi|84489967|ref|YP_448199.1| small nuclear ribonucleoprotein [Methanosphaera stadtmanae DSM
3091]
gi|84373286|gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM
3091]
Length = 81
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M K ++P++ + + L S+ + I L K+ R G + FD +MNLVL+DAEE+
Sbjct: 1 MNDQKNNNNTSRPLDALGQALNSQ--VLIKLKGGKEFR--GALQSFDMHMNLVLNDAEEI 56
Query: 61 HIKKNTRKPLGRILLKGDNIT 81
++ + LG +L++GDNI
Sbjct: 57 KDGESICR-LGVVLVRGDNIV 76
>gi|449433521|ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
gi|449490639|ref|XP_004158663.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
Length = 284
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 15/82 (18%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-----------VHIKKN 65
+ +++ + R+ I Q ++ G+ + FD +MNLVL D EE + +++
Sbjct: 9 MLQYINYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERD 64
Query: 66 TRKPLGRILLKGDNITLMMNTG 87
R+ LG +LL+G+ + M G
Sbjct: 65 ERRTLGLVLLRGEEVISMTVEG 86
>gi|390981167|pdb|4EMK|A Chain A, Crystal Structure Of Splsm567
Length = 94
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S +W+ + + G ++GFD+Y+N+VL D E +
Sbjct: 21 PLELIDKCIGS----NLWVIXKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 76
Query: 73 ILLKGDNITLMMNTGK 88
LL G+ ++ GK
Sbjct: 77 XLLNGNGXCXLIPGGK 92
>gi|440493439|gb|ELQ75911.1| Small Nuclear ribonucleoprotein G [Trachipleistophora hominis]
Length = 79
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 20 FLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDN 79
+L+ + L+ +K + G++IG DE+ N++LD+A E N R +GR L+ G +
Sbjct: 9 YLEQTMNTDVTLYMRKKKKYLGKLIGMDEHCNVLLDNAYE-ECDDNVRVEIGRALINGGS 67
Query: 80 IT 81
I
Sbjct: 68 IA 69
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G++ +D ++N+VL+DAEE+ RK LG ++++GDN+ ++
Sbjct: 27 VRGKLKSYDHHLNIVLEDAEELFPDGQARK-LGTVIIRGDNVIII 70
>gi|301107352|ref|XP_002902758.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262097876|gb|EEY55928.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 62
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKP--LGRILLKGDNITLMMNTG 87
G + GFD+Y+N+VLDD E I ++ L ++LL G+N+ L++ G
Sbjct: 9 GTLRGFDDYVNMVLDDVTEYEITPEGKREVKLDQVLLNGNNVCLLVPGG 57
>gi|321263328|ref|XP_003196382.1| hypothetical protein CGB_J0080C [Cryptococcus gattii WM276]
gi|317462858|gb|ADV24595.1| hypothetical protein CNJ03360 [Cryptococcus gattii WM276]
Length = 66
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+++L Q ++ G + G+D ++NLV+D+A E + RKP G ++++G++++ M
Sbjct: 4 RLFLHLQGGRQVSGVLRGYDMFLNLVVDNAFE-ELGGGQRKPCGMVVIRGNSVSAM 58
>gi|50425663|ref|XP_461428.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
gi|49657097|emb|CAG89843.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
Length = 93
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMM 84
+IQ+ + K+ + G +IGFD+Y+N+VL++ EE + K + ++LL G + +++
Sbjct: 34 KIQVLMTNDKEFK--GTLIGFDDYVNMVLENVEEFDNEGPKGKVIKKMLLNGSQVAMLI 90
>gi|126179510|ref|YP_001047475.1| like-Sm ribonucleoprotein, core [Methanoculleus marisnigri JR1]
gi|125862304|gb|ABN57493.1| Small nuclear ribonucleoprotein, LSM family [Methanoculleus
marisnigri JR1]
Length = 78
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ +F + SK ++I + +++GR++ DE++NL +D+ E + + + LG
Sbjct: 8 PVKKVFSLVDSKITVEI---KDDSRKLQGRLVAVDEHLNLHMDETTE-YTGEQRGRTLGT 63
Query: 73 ILLKGDNI 80
++++G+NI
Sbjct: 64 VVIRGNNI 71
>gi|195588134|ref|XP_002083813.1| GD13932 [Drosophila simulans]
gi|194195822|gb|EDX09398.1| GD13932 [Drosophila simulans]
Length = 55
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNITLMMNTGK 88
G ++GFD+++N++LDD E + R+ L +ILL G+NIT+++ G+
Sbjct: 3 GTLLGFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITMLVPGGE 52
>gi|444315021|ref|XP_004178168.1| hypothetical protein TBLA_0A08590 [Tetrapisispora blattae CBS
6284]
gi|387511207|emb|CCH58649.1| hypothetical protein TBLA_0A08590 [Tetrapisispora blattae CBS
6284]
Length = 97
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL---GRILLKGDNITLMM 84
Q+W+ Q G++IG D+++N++++D E +I+ + + GR+LL G++I +++
Sbjct: 34 QVWILLQSQREFIGKLIGVDDFVNVIIEDVTE-YIEDGESRVMEHHGRMLLSGNSIAIII 92
Query: 85 NTGK 88
G+
Sbjct: 93 PGGR 96
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + +D++MNLVL D+ E+ N K +G I+++GDN+ L+
Sbjct: 26 EVRGYLKSYDQHMNLVLSDSVEIQ-NNNDEKKMGTIVIRGDNVILI 70
>gi|223993353|ref|XP_002286360.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977675|gb|EED96001.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 94
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK------NT 66
P+ LI + + S IW+ + + G + GFD+Y+NLVLDDA E
Sbjct: 7 PLELIDKAIGSP----IWILMRGQTELTGILRGFDDYVNLVLDDAVEYSPDPRDKSVVVK 62
Query: 67 RKPLGRILLKGDNITLMMNTGK 88
+ ILL G+++ +++ GK
Sbjct: 63 KVLKAEILLNGNHVAVLVPGGK 84
>gi|328777216|ref|XP_001120196.2| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Apis
mellifera]
Length = 224
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 4 TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVH 61
+K+QR P+ ++ +++++ RI+++ + +R +E + FD++ NL L+D E+
Sbjct: 105 SKMQRTFG-PLGMLHEYMENRTRIKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEIW 163
Query: 62 IKKNTRK 68
+K RK
Sbjct: 164 TRKVKRK 170
>gi|288932200|ref|YP_003436260.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288894448|gb|ADC65985.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 73
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP 69
M +P++++ + L K + + L ++ R G + G+D +MNLVL DAEE+ + RK
Sbjct: 1 MARPLDVLNKAL--KTPVLVRLKGGREFR--GTLDGYDIHMNLVLVDAEEIQNGEVVRK- 55
Query: 70 LGRILLKGDNITLM 83
LG ++++GD + +
Sbjct: 56 LGSVVIRGDTVVFV 69
>gi|380030070|ref|XP_003698681.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Apis
florea]
Length = 224
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 4 TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVH 61
+K+QR P+ ++ +++++ RI+++ + +R +E + FD++ NL L+D E+
Sbjct: 105 SKMQRTFG-PLGMLHEYMENRTRIKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEIW 163
Query: 62 IKKNTRK 68
+K RK
Sbjct: 164 TRKVKRK 170
>gi|386002644|ref|YP_005920943.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357210700|gb|AET65320.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 72
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
G + G+D +MNLVLD+ EE+ ++++K LG ++++GDN+ +
Sbjct: 29 GELQGYDIHMNLVLDNTEEIREGEDSKK-LGTVVVRGDNVVYI 70
>gi|322791094|gb|EFZ15676.1| hypothetical protein SINV_04240 [Solenopsis invicta]
Length = 83
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S+ I + + D I G + GFD+++N++L+D E R+ L
Sbjct: 14 PLELVDKCIGSR----IHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPEGRRVTKL 69
Query: 71 GRILLKGDNITLMM 84
+ILL G NIT+++
Sbjct: 70 DQILLNGSNITMVI 83
>gi|426195723|gb|EKV45652.1| hypothetical protein AGABI2DRAFT_72502 [Agaricus bisporus var.
bisporus H97]
Length = 78
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++++ Q ++ G + G+D ++NLV+DDA E + P+G+++++G+++T M
Sbjct: 16 KLFVHLQGGRKVSGTLRGYDLFLNLVIDDAIE-ETTPAQKHPIGQVVIRGNSVTSM 70
>gi|156405713|ref|XP_001640876.1| predicted protein [Nematostella vectensis]
gi|156228012|gb|EDO48813.1| predicted protein [Nematostella vectensis]
Length = 77
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + G+D +MNLVLDDA E ++ N + +G ++++G++I M
Sbjct: 26 HVSGVLRGYDPFMNLVLDDAVE-NVSGNEKHAIGMVVIRGNSIVTM 70
>gi|340343951|ref|ZP_08667083.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519092|gb|EGP92815.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 81
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 21 LQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
LQ + ++ + + ++ +G++ D YMNL++ DAEE H K GR++++G+N+
Sbjct: 14 LQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEEFHDGK-VIANYGRVIVRGNNV 72
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + +D++MNLVL D+EE+ +K +G I+++GDN+ L+
Sbjct: 26 EVRGLLKSYDQHMNLVLSDSEEIQSDGEGKK-MGTIVIRGDNVILI 70
>gi|14600779|ref|NP_147300.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
gi|10720267|sp|Q9YEQ5.1|RUXX_AERPE RecName: Full=Putative snRNP Sm-like protein
gi|5104175|dbj|BAA79491.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
Length = 77
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 10 MTQPINL-IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK 68
M+ PI L R + + + + LRI+G + +D+++N++L DAEE I + + +
Sbjct: 1 MSGPITLPTLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEE--IGETSIR 58
Query: 69 PLGRILLKGDNITLM 83
LG L++GD++ ++
Sbjct: 59 RLGLTLVRGDSVVVI 73
>gi|390178194|ref|XP_002137483.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
gi|388859360|gb|EDY68041.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
Length = 100
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 18/97 (18%)
Query: 1 MASTKVQRIMT--QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAE 58
MA+ + Q I+ +P++LI L K + + + +++LR GR+ FD+++N+VL DAE
Sbjct: 1 MATEEEQVILPVKEPLDLIRLSLDEK--VYVKMRNERELR--GRLHAFDQHLNMVLGDAE 56
Query: 59 EV------------HIKKNTRKPLGRILLKGDNITLM 83
E + K T++ + + ++GD + L+
Sbjct: 57 ETVTTVEIDEETYEEVYKTTKRTIPMLFVRGDGVILV 93
>gi|409049871|gb|EKM59348.1| hypothetical protein PHACADRAFT_169890 [Phanerochaete carnosa
HHB-10118-sp]
Length = 77
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++++ Q ++ G + G+D ++NLVLDDA E + P+G ++++G+++T M
Sbjct: 16 KLFVHLQGGRKVSGVLRGYDLFLNLVLDDALE-ETTPAQKHPIGTVVIRGNSVTSM 70
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + +D++MNLVL D+EE+ +K +G I+++GDN+ L+
Sbjct: 30 VRGLLKSYDQHMNLVLSDSEEIQSDGGGKK-MGTIVIRGDNVILI 73
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + +D +MNLVL+++EE+ +TRK +G I+++GDN+ L+
Sbjct: 27 VRGTLKSYDMHMNLVLENSEEIMNDGSTRK-VGTIVIRGDNVILV 70
>gi|326428499|gb|EGD74069.1| hypothetical protein PTSG_12357 [Salpingoeca sp. ATCC 50818]
Length = 212
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 14/78 (17%)
Query: 15 NLIFRFLQSKARIQIWLFEQKDLR-IEGRIIGFDEYMNLVLDDAEE---VHIKKNT---- 66
N I +++ + R+ +D R + G + +D++MN+VL D EE V KK T
Sbjct: 7 NKILKYMNYRMRVTT-----EDGRMLVGTFMAYDKHMNMVLSDCEEFRTVKAKKGTDEQT 61
Query: 67 -RKPLGRILLKGDNITLM 83
++ LG ILL+G+N+ M
Sbjct: 62 QKRALGFILLRGENVVSM 79
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
++P++++ + L S+ I++ + G + FD +MNLVL++AEE+ T K L
Sbjct: 10 SRPLDVLGKSLNSQVLIEL----KGGREFRGLLKSFDMHMNLVLNEAEELD-GLETAKRL 64
Query: 71 GRILLKGDNIT 81
G +L++GDNI
Sbjct: 65 GIVLIRGDNIV 75
>gi|327311719|ref|YP_004338616.1| small nuclear ribonucleoprotein [Thermoproteus uzoniensis 768-20]
gi|326948198|gb|AEA13304.1| small nuclear ribonucleoprotein [Thermoproteus uzoniensis 768-20]
Length = 86
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 36 DLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
D+ + G + +D MNLVLD+AEE+ T+ GRIL++G I
Sbjct: 32 DVVVRGILSIYDSCMNLVLDEAEELDKNGATKMKYGRILIRGSQI 76
>gi|118577120|ref|YP_876863.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118195641|gb|ABK78559.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 106
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 21 LQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
LQ + + + + + +G++ D YMNL++ DAEE H K GR++++G+N+
Sbjct: 39 LQKSTKKAVTVRLKNETEYKGKMENVDSYMNLIMTDAEEFHDSKVVAN-YGRVIVRGNNV 97
>gi|66363282|ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
gi|90109709|pdb|2FWK|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|90109710|pdb|2FWK|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|321159967|pdb|3PGG|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|321159968|pdb|3PGG|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|46229827|gb|EAK90645.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
Length = 121
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 18/89 (20%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG- 71
P+ LI + + ++ I++ + D G + GFDEY+N+VLDD +E K + G
Sbjct: 29 PLALIDKCIGNR----IYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGG 84
Query: 72 -------------RILLKGDNITLMMNTG 87
ILL G+N+ +++ G
Sbjct: 85 NKKLKRVMVNRLETILLSGNNVAMLVPGG 113
>gi|67601363|ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis
TU502]
gi|54657379|gb|EAL36161.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis]
Length = 115
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 18/89 (20%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG- 71
P+ LI + + ++ I++ + D G + GFDEY+N+VLDD +E K + G
Sbjct: 23 PLALIDKCIGNR----IYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDMSGG 78
Query: 72 -------------RILLKGDNITLMMNTG 87
ILL G+N+ +++ G
Sbjct: 79 NKKLKRVMVNRLETILLSGNNVAMLVPGG 107
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
Length = 79
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + +D +MNLVL+++EE+ +TRK +G I+++GDN+ L+
Sbjct: 33 VRGTLKSYDMHMNLVLENSEEIMNDGSTRK-VGTIVIRGDNVILV 76
>gi|352682842|ref|YP_004893366.1| hypothetical protein TTX_1667 [Thermoproteus tenax Kra 1]
gi|350275641|emb|CCC82288.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Thermoproteus tenax Kra 1]
Length = 86
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 36 DLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
D+ + G + +D MNLVLD+AEE+ N + GRIL++G I
Sbjct: 32 DVVVRGVLSIYDSCMNLVLDNAEELDKVGNAKMRYGRILIRGSQI 76
>gi|313217530|emb|CBY38609.1| unnamed protein product [Oikopleura dioica]
gi|313236587|emb|CBY19879.1| unnamed protein product [Oikopleura dioica]
Length = 76
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++EG + GFD +MNLV+DDA E + K N+ +G +++G+++ ++
Sbjct: 26 KVEGVLRGFDPFMNLVIDDAIE-YRKDNSSHTMGMCVIRGNSVLMI 70
>gi|282164954|ref|YP_003357339.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282157268|dbj|BAI62356.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 72
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 81
G + G+D +MNLVLD+AEE+ + ++K LG I+++GD +
Sbjct: 29 GELQGYDMHMNLVLDNAEELKENEESKK-LGTIIVRGDTVV 68
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 76
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
I G + GFD++MNL+L+D+ E+ +++ LG I+++GDN+ ++
Sbjct: 28 IRGNLHGFDQHMNLLLEDSVEI-LEEGKSNDLGTIVVRGDNVVII 71
>gi|170106101|ref|XP_001884262.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640608|gb|EDR04872.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 78
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++++ Q ++ G + G+D ++NLV+DDA E + P+G ++++G+++T M
Sbjct: 16 KLFVHLQGGRKVSGTLRGYDLFLNLVIDDAIE-ETTPAQKHPIGTVVIRGNSVTSM 70
>gi|195134290|ref|XP_002011570.1| GI11102 [Drosophila mojavensis]
gi|195399181|ref|XP_002058199.1| GJ15956 [Drosophila virilis]
gi|193906693|gb|EDW05560.1| GI11102 [Drosophila mojavensis]
gi|194150623|gb|EDW66307.1| GJ15956 [Drosophila virilis]
Length = 76
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 27 VTGILRGFDPFMNVVLDDTVE-ECKDNTKNSIGMVVIRGNSIVMV 70
>gi|392568108|gb|EIW61282.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
gi|395328913|gb|EJF61303.1| like-Sm ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
gi|449549694|gb|EMD40659.1| hypothetical protein CERSUDRAFT_111239 [Ceriporiopsis
subvermispora B]
Length = 77
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++++ Q ++ G + G+D ++NLV+DDA E + P+G ++++G+++T M
Sbjct: 16 KLFVHLQGGRKVSGTLRGYDLFLNLVIDDALE-ETNPAQKHPIGTVVIRGNSVTSM 70
>gi|391346676|ref|XP_003747595.1| PREDICTED: small nuclear ribonucleoprotein G-like [Metaseiulus
occidentalis]
Length = 76
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD +MN+VL++A E +K R P+G +++G++I L+
Sbjct: 27 VSGILRGFDPFMNIVLEEAFE-EVKGGQRTPIGMTVIRGNSIVLL 70
>gi|357494377|ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355518812|gb|AET00436.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
Length = 394
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI------KKNT---- 66
+ +++ + R+ I Q ++ G+ + FD +MNLVL D EE KK T
Sbjct: 9 MLQYINYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTTDGDR 64
Query: 67 --RKPLGRILLKGDNITLMMNTG 87
R+ LG +LL+G+ + M G
Sbjct: 65 EDRRTLGLVLLRGEEVISMAVEG 87
>gi|255087740|ref|XP_002505793.1| predicted protein [Micromonas sp. RCC299]
gi|226521063|gb|ACO67051.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE---VHIKKN-------TRKPLGRILL 75
R++I + + + +I GR + FD +MNLVL DAEE + KK R+ LG ILL
Sbjct: 16 RMRITIVDGR--QIVGRFMAFDRHMNLVLSDAEEFRKLPPKKGLTEEDRAVRRVLGFILL 73
Query: 76 KGDNITLMMNTGK 88
+G+ + M G
Sbjct: 74 RGEEVVSMTVEGP 86
>gi|403363323|gb|EJY81404.1| Small nuclear ribonucleoprotein polypeptide G [Oxytricha
trifallax]
Length = 79
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88
+ G + G+D+++N+VLD+A E+ I K+ ++ LG I+++G+++ + N K
Sbjct: 29 VAGVLKGYDQFLNIVLDNAIEI-INKDEKRELGTIVIRGNSVVMWENLDK 77
>gi|154151155|ref|YP_001404773.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153999707|gb|ABS56130.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 78
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR-KPLG 71
PI +F + SK ++I + + +++GR++ DEY+N+ +D E + N R + LG
Sbjct: 8 PIKKVFALVDSKIIVEI---KDEGRKLQGRLVAVDEYLNIHMD--ETIEFVNNERGRSLG 62
Query: 72 RILLKGDNI 80
++++G+NI
Sbjct: 63 TVVIRGNNI 71
>gi|145489729|ref|XP_001430866.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397967|emb|CAK63468.1| unnamed protein product [Paramecium tetraurelia]
Length = 77
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ L+ + + S+ +W+ + D EG + GFD++ N+VL++ E+ K + L
Sbjct: 6 PLGLLDKAISSR----VWILMKDDREFEGTLRGFDDFFNMVLENVIELDGGKKNK--LES 59
Query: 73 ILLKGDNITLMMNTGK 88
ILL G I L++ G+
Sbjct: 60 ILLNGTQICLIVPGGE 75
>gi|357126029|ref|XP_003564691.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Brachypodium distachyon]
Length = 98
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 16/95 (16%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MAS + + + +P++LI L RI + L ++LR G++ +D+++N++L D EE+
Sbjct: 1 MASAEEEIAVKEPLDLIR--LSLDERIYVKLRSDRELR--GKLHAYDQHLNMILGDVEEI 56
Query: 61 ------------HIKKNTRKPLGRILLKGDNITLM 83
I + TR+ + + ++GD + L+
Sbjct: 57 VTTVEIDDETYEEIVRTTRRTIPFLFVRGDGVILV 91
>gi|294495046|ref|YP_003541539.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666045|gb|ADE35894.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 72
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
G + G+D +MNLVLD+AEE+ + RK +G ++++GDN+ +
Sbjct: 29 GTLQGYDVHMNLVLDEAEEIKEGEIIRK-IGSVVVRGDNVVYV 70
>gi|336272660|ref|XP_003351086.1| hypothetical protein SMAC_05965 [Sordaria macrospora k-hell]
Length = 189
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MAST Q M IN R + R ++ G+++ FD++MNLVL DAEE
Sbjct: 1 MASTNKQGKMAGYINYRMRVTLNDGR-----------QMTGQMLAFDKHMNLVLADAEEF 49
Query: 61 HIKKNTRKPLGRILLKGDNI 80
+K T LG +++G +I
Sbjct: 50 RQEKRT---LGLTIIRGAHI 66
>gi|290992103|ref|XP_002678674.1| predicted protein [Naegleria gruberi]
gi|284092287|gb|EFC45930.1| predicted protein [Naegleria gruberi]
Length = 83
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 13/80 (16%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH--IKKNT-------R 67
+++FL + RI + Q +I G+ + FD++MNLV+ D EE I K + +
Sbjct: 5 LYQFLNYRMRITL----QDGRQIVGKFMAFDKFMNLVVADCEEFRKIIPKGSKGEEVEQK 60
Query: 68 KPLGRILLKGDNITLMMNTG 87
+ LG +L++G+NI ++ G
Sbjct: 61 RSLGFLLIRGENIISIVVEG 80
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 72
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 81
G + G+D +MNLVL++AEE+ + +RK LG I+++GD +
Sbjct: 29 GELQGYDMHMNLVLENAEELKENEESRK-LGTIIVRGDTVV 68
>gi|324514246|gb|ADY45805.1| Small nuclear ribonucleoprotein G [Ascaris suum]
Length = 79
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD +MN+V++DA E H+K LG ++++G++I +M
Sbjct: 26 HVSGVLRGFDPFMNIVVEDAVE-HLKNGESNTLGMVVIRGNSIVIM 70
>gi|444731320|gb|ELW71676.1| Transmembrane protein 178 [Tupaia chinensis]
Length = 264
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 22/24 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQ 28
KVQ++ QPINLIFR+LQ++++IQ
Sbjct: 9 KVQKVTVQPINLIFRYLQNRSQIQ 32
>gi|452824595|gb|EME31597.1| small nuclear ribonucleoprotein B and B' [Galdieria sulphuraria]
Length = 214
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 6/62 (9%)
Query: 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI----KKNTRKPLGRILLKGDNIT 81
R+++ L +Q+ I G+++ FD+++NLVL+D EE K ++ LG +LL+G+++
Sbjct: 16 RLRVSLDDQR--VIVGQLLAFDKHLNLVLNDCEEFRKLKKQDKEEKRALGLVLLRGESVI 73
Query: 82 LM 83
M
Sbjct: 74 TM 75
>gi|389746943|gb|EIM88122.1| like-Sm ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 77
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++++ Q ++ G + G+D ++NLV+DDA E + P+G ++++G+++T M
Sbjct: 16 KLFVHLQGGRKVSGTLRGYDLFLNLVIDDAIE-ETTPAQKHPIGTVVIRGNSVTSM 70
>gi|294887859|ref|XP_002772254.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
gi|239876324|gb|EER04070.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
Length = 87
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 19 RFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGD 78
RF++ + +++ D + G + G+D++MNLVLD+A E+ + + ++ +G ++++G+
Sbjct: 19 RFMEKRIDVKL----NADRHVVGVVRGYDQFMNLVLDNAVEL-VSRTEKREIGMVVIRGN 73
Query: 79 NITL 82
+I +
Sbjct: 74 SILM 77
>gi|307169174|gb|EFN61990.1| U7 snRNA-associated Sm-like protein LSm11 [Camponotus floridanus]
Length = 116
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVHIKKNTRK 68
P+ ++ +++K RI+++ + +R +E ++ FD++ NL L+D EV +K RK
Sbjct: 7 PLGMLHGCMENKIRIRVYTRNARGIRGHVEAYVVAFDKHWNLALEDCYEVWSRKVKRK 64
>gi|196009502|ref|XP_002114616.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190582678|gb|EDV22750.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 76
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 7/66 (10%)
Query: 19 RFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA-EEVHIKKNTRKPLGRILLKG 77
+F++ + I+I + + G + GFD +MN+VLDD E+V K+N LG ++++G
Sbjct: 11 KFMEKRLSIKI----NGNRTVVGTLRGFDPFMNIVLDDTVEQVSSKENNH--LGMVVIRG 64
Query: 78 DNITLM 83
+++ +M
Sbjct: 65 NSVVMM 70
>gi|403333765|gb|EJY66003.1| U6 small nuclear ribonucleoprotein E, putative [Oxytricha
trifallax]
Length = 81
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 29 IWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL-----GRILLKGDNITLM 83
+W+ Q D G + GFD Y NL+LDD +E K L +LL G +I +M
Sbjct: 10 VWIIMQNDKEFSGTLRGFDGYFNLILDDVKEYQDAGAGGKRLLVNQVESMLLNGSHICMM 69
Query: 84 M 84
+
Sbjct: 70 I 70
>gi|145491875|ref|XP_001431936.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399043|emb|CAK64538.1| unnamed protein product [Paramecium tetraurelia]
Length = 126
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 6/46 (13%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKN------TRKPLGRILLKGDNI 80
G + FD+++N++L + EE I+K T++ LG I+++GDNI
Sbjct: 27 GTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVRGDNI 72
>gi|291239259|ref|XP_002739539.1| PREDICTED: small nuclear ribonucleoprotein polypeptide N-like
[Saccoglossus kowalevskii]
Length = 228
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 41 GRIIGFDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNITLMMNTGK 88
G + FD++MNL+L D EE IK KNT++P LG +LL+G+++ M G
Sbjct: 29 GTFLAFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGLVLLRGEHLVSMTVEGP 85
>gi|357475053|ref|XP_003607812.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
gi|355508867|gb|AES90009.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
Length = 98
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 51/95 (53%), Gaps = 16/95 (16%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA T+ + + +P++LI L RI + L ++LR G++ +D+++N++L D EE+
Sbjct: 1 MAGTEEESAVKEPLDLIR--LSLDERIYVKLRSDRELR--GKLHAYDQHLNMILGDVEEI 56
Query: 61 ------------HIKKNTRKPLGRILLKGDNITLM 83
I + T++ + + ++GD + L+
Sbjct: 57 VTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILV 91
>gi|300681475|emb|CBH32569.1| U6 snRNA-associated Sm-like protein, expressed [Triticum
aestivum]
Length = 98
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 16/95 (16%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MAS + + +P++LI L RI + L ++LR G++ +D+++N++L D EE+
Sbjct: 1 MASADEEIAVKEPLDLIR--LSLDERIYVKLRSDRELR--GKLHAYDQHLNMILGDVEEI 56
Query: 61 ------------HIKKNTRKPLGRILLKGDNITLM 83
I + TR+ + + ++GD + L+
Sbjct: 57 VTTVEIDDETYEEIVRTTRRAIPFLFVRGDGVILV 91
>gi|145499845|ref|XP_001435907.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403043|emb|CAK68510.1| unnamed protein product [Paramecium tetraurelia]
Length = 138
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 6/46 (13%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKN------TRKPLGRILLKGDNI 80
G + FD+++N++L + EE I+K T++ LG I+++GDNI
Sbjct: 27 GTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVRGDNI 72
>gi|195042091|ref|XP_001991363.1| GH12097 [Drosophila grimshawi]
gi|193901121|gb|EDV99987.1| GH12097 [Drosophila grimshawi]
Length = 76
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 27 VTGILRGFDPFMNVVLDDTIE-ECKDNTKNSIGMVVIRGNSIVMV 70
>gi|323446815|gb|EGB02847.1| hypothetical protein AURANDRAFT_9792 [Aureococcus
anophagefferens]
Length = 95
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 26/95 (27%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNL-------------------- 52
P+ L+ + + S+ IW+ + D + G + GFDEY+N+
Sbjct: 4 PLELVDKCIGSR----IWVIMKGDKEVVGTLRGFDEYVNMAPRRRPPHPPTPRAERRGPQ 59
Query: 53 VLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87
VLDD E T+ L +ILL G+N+++M+ G
Sbjct: 60 VLDDVTEYCDGAKTQ--LDQILLNGNNVSMMVPGG 92
>gi|383852431|ref|XP_003701731.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Megachile rotundata]
Length = 219
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 20/80 (25%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q IN R + +R I F+ FD++MNL+L D EE IK KNT+
Sbjct: 11 MLQHINYRIRIILQDSRTFIGTFKA-----------FDKHMNLILGDCEEFRKIKPKNTK 59
Query: 68 KP-------LGRILLKGDNI 80
+P LG +LL+G+NI
Sbjct: 60 QPEREDKRVLGFVLLRGENI 79
>gi|88602493|ref|YP_502671.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88187955|gb|ABD40952.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 79
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
PI ++ + + I + + E + +GR++ DEY+NL L+++ E KN + LG
Sbjct: 8 PIKKVYSLVDT--LISVEMKEDEGRTFQGRLVAVDEYLNLHLEESIETS-GKNKGRELGT 64
Query: 73 ILLKGDNI 80
++++G+NI
Sbjct: 65 LVIRGNNI 72
>gi|147919071|ref|YP_687199.1| small nuclear riboprotein-like protein [Methanocella arvoryzae
MRE50]
gi|110622595|emb|CAJ37873.1| small nuclear riboprotein-like protein [Methanocella arvoryzae
MRE50]
Length = 74
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++Q+ + +K++ +EG ++ D+Y+NL L D EV + R LG ++L+G+NI L+
Sbjct: 14 KVQVEMKGEKNI-LEGTLVSADDYLNLHLVDTTEVAAGQKLRT-LGSVVLRGNNIILL 69
>gi|156540632|ref|XP_001599264.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B
[Nasonia vitripennis]
Length = 217
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 20/80 (25%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q IN R + +R I F+ FD++MNL+L D EE IK KNT+
Sbjct: 9 MLQHINYRVRIILQDSRTFIGTFKA-----------FDKHMNLILGDCEEFRKIKPKNTK 57
Query: 68 KP-------LGRILLKGDNI 80
+P LG +LL+G+NI
Sbjct: 58 QPEREEKRVLGFVLLRGENI 77
>gi|239787841|ref|NP_001155181.1| small ribonucleoprotein particle protein B [Apis mellifera]
Length = 217
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 20/80 (25%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q IN R + +R I F+ FD++MNL+L D EE IK KNT+
Sbjct: 9 MLQHINYRVRIILQDSRTFIGTFKA-----------FDKHMNLILGDCEEFRKIKPKNTK 57
Query: 68 KP-------LGRILLKGDNI 80
+P LG +LL+G+NI
Sbjct: 58 QPEREDKRVLGFVLLRGENI 77
>gi|18860007|ref|NP_573139.1| small ribonucleoprotein particle protein SmG, isoform A
[Drosophila melanogaster]
gi|221372123|ref|NP_001138209.1| small ribonucleoprotein particle protein SmG, isoform B
[Drosophila melanogaster]
gi|195351500|ref|XP_002042272.1| GM13382 [Drosophila sechellia]
gi|195567140|ref|XP_002107128.1| GD15738 [Drosophila simulans]
gi|29428065|sp|Q9VXE0.1|RUXG_DROME RecName: Full=Probable small nuclear ribonucleoprotein G;
Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G;
Short=SmG
gi|7293253|gb|AAF48634.1| small ribonucleoprotein particle protein SmG, isoform A
[Drosophila melanogaster]
gi|17944563|gb|AAL48169.1| RH35475p [Drosophila melanogaster]
gi|194124115|gb|EDW46158.1| GM13382 [Drosophila sechellia]
gi|194204529|gb|EDX18105.1| GD15738 [Drosophila simulans]
gi|220901796|gb|ACL82939.1| small ribonucleoprotein particle protein SmG, isoform B
[Drosophila melanogaster]
gi|220952224|gb|ACL88655.1| SmG-PA [synthetic construct]
Length = 76
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 27 VTGILRGFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMV 70
>gi|391337947|ref|XP_003743325.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Metaseiulus occidentalis]
Length = 103
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 47/87 (54%), Gaps = 16/87 (18%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-------- 60
+M +P++++ L RI + + +++LR GR+ +D+++N+VL D EE
Sbjct: 13 VMNEPLDMVR--LSLDERIYVKMRNERELR--GRLHAYDQHLNMVLGDVEETVTSVEIDE 68
Query: 61 ----HIKKNTRKPLGRILLKGDNITLM 83
+ K +R+ + + ++GD + L+
Sbjct: 69 ETFEEVYKTSRRSIPMLFVRGDGVILV 95
>gi|340712457|ref|XP_003394776.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus terrestris]
gi|340712459|ref|XP_003394777.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus terrestris]
gi|350399783|ref|XP_003485637.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus impatiens]
gi|350399786|ref|XP_003485638.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus impatiens]
Length = 217
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 20/80 (25%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q IN R + +R I F+ FD++MNL+L D EE IK KNT+
Sbjct: 9 MLQHINYRVRIILQDSRTFIGTFKA-----------FDKHMNLILGDCEEFRKIKPKNTK 57
Query: 68 KP-------LGRILLKGDNI 80
+P LG +LL+G+NI
Sbjct: 58 QPEREDKRVLGFVLLRGENI 77
>gi|375082287|ref|ZP_09729353.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
gi|374743044|gb|EHR79416.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
Length = 76
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I + L ++ + ++ GR+IG+D ++N+VL DA+ + +K G
Sbjct: 4 RPLDVIHKSLDK----EVLVILKRGAEFRGRLIGYDIHLNVVLADAQLIE-DGEPKKNYG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>gi|320163467|gb|EFW40366.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 304
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIE--GRIIGFDEYMNLVLDDAEEV-- 60
+++ + P+++++R ++ R ++W+ + K +R + ++ FD++ N+V+ D +E+
Sbjct: 171 RMEELQIGPLSVLYRCVKEHYRARLWIRDDKGIRSQMLATVLVFDKHFNMVVTDVQEIVD 230
Query: 61 -HIKKNTRKPL-GRILL 75
+N RKP+ +ILL
Sbjct: 231 MRRFRNLRKPIDSQILL 247
>gi|67623475|ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|54659204|gb|EAL37793.1| similar to small nuclear ribonucleoprotein [Cryptosporidium
hominis]
Length = 139
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 21 LQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP------LGRIL 74
+Q +I + Q D + G ++ FD +MNLVL D +E K +P LG I+
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIM 60
Query: 75 LKGDNI 80
L+G+NI
Sbjct: 61 LRGENI 66
>gi|307193681|gb|EFN76364.1| Small nuclear ribonucleoprotein-associated protein B
[Harpegnathos saltator]
Length = 208
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 20/80 (25%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q IN R + +R I F+ FD++MNL+L D EE IK KNT+
Sbjct: 1 MLQHINYRVRIILQDSRTFIGTFKA-----------FDKHMNLILGDCEEFRKIKPKNTK 49
Query: 68 KP-------LGRILLKGDNI 80
+P LG +LL+G+NI
Sbjct: 50 QPEREEKRVLGFVLLRGENI 69
>gi|194891288|ref|XP_001977464.1| GG18240 [Drosophila erecta]
gi|195479283|ref|XP_002100833.1| GE15956 [Drosophila yakuba]
gi|190649113|gb|EDV46391.1| GG18240 [Drosophila erecta]
gi|194188357|gb|EDX01941.1| GE15956 [Drosophila yakuba]
Length = 76
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 27 VTGILRGFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMV 70
>gi|11498481|ref|NP_069709.1| small nuclear ribonucleoprotein [Archaeoglobus fulgidus DSM 4304]
gi|6094214|sp|O29386.1|RUXX_ARCFU RecName: Full=Putative snRNP Sm-like protein
gi|15826634|pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826635|pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826636|pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826637|pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826638|pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826639|pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826640|pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826641|pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826642|pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826643|pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826644|pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826645|pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826646|pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826647|pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826691|pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826692|pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826693|pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826694|pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826695|pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826696|pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826697|pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826698|pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826699|pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826700|pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826701|pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826702|pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826703|pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826704|pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826705|pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826706|pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826707|pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826708|pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826709|pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826710|pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826711|pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826712|pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826713|pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826714|pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826715|pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826716|pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826717|pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826718|pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|2649736|gb|AAB90374.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 77
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
+P++++ R L+S + + L ++ R G + G+D +MNLVL DAEE+ + RK +
Sbjct: 3 PRPLDVLNRSLKSP--VIVRLKGGREFR--GTLDGYDIHMNLVLLDAEEIQNGEVVRK-V 57
Query: 71 GRILLKGDNITLM 83
G ++++GD + +
Sbjct: 58 GSVVIRGDTVVFV 70
>gi|255578055|ref|XP_002529898.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530625|gb|EEF32501.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 34 QKDLRIEGRIIGFDEYMNLVLDDAEEVHI------KKNT-----RKPLGRILLKGDNITL 82
Q ++ G+ + FD +MNLVL D EE KKN R+ LG +LL+G+ +
Sbjct: 22 QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTLGLVLLRGEEVIS 81
Query: 83 MMNTG 87
M G
Sbjct: 82 MTVEG 86
>gi|255578051|ref|XP_002529896.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530623|gb|EEF32499.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 34 QKDLRIEGRIIGFDEYMNLVLDDAEEVHI------KKNT-----RKPLGRILLKGDNITL 82
Q ++ G+ + FD +MNLVL D EE KKN R+ LG +LL+G+ +
Sbjct: 22 QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTLGLVLLRGEEVIS 81
Query: 83 MMNTG 87
M G
Sbjct: 82 MTVEG 86
>gi|118431273|ref|YP_874866.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
gi|116062596|dbj|BAF34765.1| putative small nucleolar RNP protein Sm [Aeropyrum pernix K1]
Length = 94
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR--KPLGRILL 75
F++L+ QI++ + G+++ D MNL+LDDA EV TR +GR+L+
Sbjct: 13 FKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVA-DNGTRLVAKIGRVLI 71
Query: 76 KG 77
KG
Sbjct: 72 KG 73
>gi|448080005|ref|XP_004194518.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
gi|359375940|emb|CCE86522.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ +I + + K I++ L K+ G ++GFD+Y+N+VL++ EE ++ K + +
Sbjct: 20 PLEVIDKSIGHK--IRVLLTNTKEFH--GTLVGFDDYVNVVLENVEEFDGDASSGKIVKK 75
Query: 73 ILLKGDNITLMM 84
+LL G I +++
Sbjct: 76 MLLNGGQIAMLV 87
>gi|322779204|gb|EFZ09540.1| hypothetical protein SINV_80286 [Solenopsis invicta]
Length = 344
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 20/80 (25%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q IN R + +R I F+ FD++MNL+L D EE IK KNT+
Sbjct: 8 MLQHINYRVRIILQDSRTFIGTFKA-----------FDKHMNLILGDCEEFRKIKPKNTK 56
Query: 68 KP-------LGRILLKGDNI 80
+P LG +LL+G+NI
Sbjct: 57 QPEREEKRVLGFVLLRGENI 76
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 20/80 (25%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q IN R + +R I F+ FD++MNL+L D EE IK KNT+
Sbjct: 137 MLQHINYRVRIILQDSRTFIGTFKA-----------FDKHMNLILGDCEEFRKIKPKNTK 185
Query: 68 KP-------LGRILLKGDNI 80
+P LG +LL+G+NI
Sbjct: 186 QPEREEKRVLGFVLLRGENI 205
>gi|307188198|gb|EFN73030.1| Small nuclear ribonucleoprotein-associated protein B [Camponotus
floridanus]
Length = 209
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 20/80 (25%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q IN R + +R I F+ FD++MNL+L D EE IK KNT+
Sbjct: 1 MLQHINYRVRIILQDSRTFIGTFKA-----------FDKHMNLILGDCEEFRKIKPKNTK 49
Query: 68 KP-------LGRILLKGDNI 80
+P LG +LL+G+NI
Sbjct: 50 QPEREEKRVLGFVLLRGENI 69
>gi|157123813|ref|XP_001653925.1| snrnp sm protein [Aedes aegypti]
gi|108874209|gb|EAT38434.1| AAEL009671-PA [Aedes aegypti]
Length = 101
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L K I + + +++LR GR+ FD+++N+VL DAEE
Sbjct: 14 EPLDLIRLSLDEK--IYVKMRNERELR--GRLHAFDQHLNMVLGDAEETVTTVEIDEETY 69
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ K T++ + + ++GD + L+
Sbjct: 70 EEVYKTTKRTIPMLFVRGDGVILV 93
>gi|194763519|ref|XP_001963880.1| GF21254 [Drosophila ananassae]
gi|190618805|gb|EDV34329.1| GF21254 [Drosophila ananassae]
Length = 101
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 52 VTGILRGFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMV 95
>gi|323448261|gb|EGB04162.1| hypothetical protein AURANDRAFT_32975 [Aureococcus
anophagefferens]
Length = 77
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
R+ G + G+D+++NLVL+DA E + P+G ++L+G+ I
Sbjct: 26 RVSGVLRGYDQFLNLVLEDATE-DGSDGAKTPIGMVVLRGNGI 67
>gi|355571637|ref|ZP_09042865.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825270|gb|EHF09500.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 75
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P++++ + L + I + L ++LR G + G+D +MNLVLD AEE I+ + +G
Sbjct: 4 RPLDILDQVLNRQPVI-VSLKGGRELR--GVLQGYDVHMNLVLDKAEE--IEGGQSRSVG 58
Query: 72 RILLKGDNI 80
++++GDN+
Sbjct: 59 TLIVRGDNV 67
>gi|353243444|emb|CCA74984.1| probable U6 snRNA-associated Sm-like protein LSm5 [Piriformospora
indica DSM 11827]
Length = 84
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---KKNTRKP 69
P+ LI R + S RI + L + D G ++GFD+++N+VL+D E + +
Sbjct: 7 PLELIDRCIGS--RITVIL--KNDREFTGVLLGFDDFVNMVLEDVTECQTLPSGERVKTK 62
Query: 70 LGRILLKGDNITLMM 84
L LL G+NI +++
Sbjct: 63 LQTTLLNGNNICILL 77
>gi|344233517|gb|EGV65389.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 131
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 15/55 (27%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNT---------------RKPLGRILLKGDNI 80
G ++ FD++MNLVL D EEV I K + + LG I+L+GD I
Sbjct: 32 GNLLAFDKHMNLVLSDCEEVRIPKKSLQDLKKGVATEPRELKTNLGLIILRGDQI 86
>gi|332022693|gb|EGI62970.1| Small nuclear ribonucleoprotein-associated protein B [Acromyrmex
echinatior]
Length = 207
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 9/49 (18%)
Query: 41 GRIIGFDEYMNLVLDDAEEVH-IK-KNTRKP-------LGRILLKGDNI 80
G FD++MNL+L D EE IK KNT++P LG +LL+G+NI
Sbjct: 29 GTFKAFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLLRGENI 77
>gi|350536415|ref|NP_001233054.1| uncharacterized protein LOC100167860 [Acyrthosiphon pisum]
gi|239792347|dbj|BAH72527.1| ACYPI008615 [Acyrthosiphon pisum]
Length = 106
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L RI + + ++LR GR+ FD+++N+VL +AEE
Sbjct: 20 EPVDLIR--LSVDERIYVKMRHDRELR--GRLHAFDQHLNMVLGEAEETITTIEVDEETF 75
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ K T++ + + ++GD + L+
Sbjct: 76 EEVYKTTKRTIPMLFVRGDGVILV 99
>gi|224011573|ref|XP_002295561.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209583592|gb|ACI64278.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 414
Score = 37.7 bits (86), Expect = 0.89, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEV 60
++K + + P++L++ L ++ R+++ + +R + G +I FD++ N++L D +EV
Sbjct: 209 ASKYEHKNSGPLSLLYSILANRQRVRVMVRYVDCVRGTLTGYLIAFDKHFNMILKDVDEV 268
Query: 61 HIKKNTR 67
+ + TR
Sbjct: 269 YSGRVTR 275
>gi|116753552|ref|YP_842670.1| small nuclear ribonucleoprotein [Methanosaeta thermophila PT]
gi|116665003|gb|ABK14030.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 71
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLR-IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
+P++++ L S +++ KD R G + G+D +MNLVL++ EE I + T + +
Sbjct: 4 RPLDILNESLNSPVIVRL-----KDGRAFRGELQGYDIHMNLVLENTEE--IAEGTARKI 56
Query: 71 GRILLKGDNITLM 83
G ++++GDN+ +
Sbjct: 57 GAVIVRGDNVVYI 69
>gi|397780467|ref|YP_006544940.1| like-Sm ribonucleoprotein, core [Methanoculleus bourgensis MS2]
gi|396938969|emb|CCJ36224.1| like-Sm ribonucleoprotein, core [Methanoculleus bourgensis MS2]
Length = 78
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ +F + SK ++I + +++GR++ DE++NL +D+ E + + LG
Sbjct: 8 PVKKVFSLVDSKIVVEI---KDDGRKLQGRLVAVDEHLNLHMDETTE-YTGDQRGRTLGT 63
Query: 73 ILLKGDNI 80
++++G+NI
Sbjct: 64 VVIRGNNI 71
>gi|289742031|gb|ADD19763.1| small nuclear ribonucleoprotein LsM3 [Glossina morsitans
morsitans]
Length = 102
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L K + + + +++LR GR+ FD+++N+VL DAEE
Sbjct: 16 EPLDLIRLSLDEK--VYVKMRNERELR--GRLHAFDQHLNMVLGDAEETVTTVEIDEETY 71
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ K T++ + + ++GD + L+
Sbjct: 72 EEVYKTTKRTIPMLFVRGDGVILV 95
>gi|198477433|ref|XP_002136614.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
gi|198142906|gb|EDY71618.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
Length = 167
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L K ++ + +++LR GR+ FD+++N+VL DAEE
Sbjct: 81 EPLDLIRLSLDEKVYVK--MRNERELR--GRLHAFDQHLNMVLGDAEETVTTVEIDEETY 136
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ K T++ + + ++GD + L+
Sbjct: 137 EEVYKTTKRTIPMLFVRGDGVILV 160
>gi|70937084|ref|XP_739397.1| ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|56516366|emb|CAH81154.1| ribonucleoprotein, putative [Plasmodium chabaudi chabaudi]
Length = 141
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 13/69 (18%)
Query: 20 FLQSKARIQIWLFEQKDLRIE-GRIIGFDEYMNLVLDDAEE---VHIKKNTRKPL----G 71
+LQ + R+ I D R G + +D +MN+VL DAEE V K+N K + G
Sbjct: 10 WLQYRVRVTI-----SDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKCKENNSKEIKRVVG 64
Query: 72 RILLKGDNI 80
IL++GDNI
Sbjct: 65 LILIRGDNI 73
>gi|195447608|ref|XP_002071290.1| GK25208 [Drosophila willistoni]
gi|194167375|gb|EDW82276.1| GK25208 [Drosophila willistoni]
Length = 76
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 27 VNGILRGFDPFMNVVLDDTIE-ECKDNTKNNIGMVVIRGNSIVMV 70
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 34/46 (73%), Gaps = 4/46 (8%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTR-KPLGRILLKGDNITLM 83
I G++ +D ++NLVL++AEE+ + TR + LG I+++GDN+ L+
Sbjct: 27 IRGQLKSYDYHLNLVLENAEEI---RGTRTRQLGTIIVRGDNVILV 69
>gi|242398502|ref|YP_002993926.1| snRNP Sm-like protein [Thermococcus sibiricus MM 739]
gi|259495716|sp|C6A1T2.1|RUXX_THESM RecName: Full=Putative snRNP Sm-like protein
gi|242264895|gb|ACS89577.1| Putative snRNP Sm-like protein [Thermococcus sibiricus MM 739]
Length = 76
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I + L ++ + ++ G++IG+D ++N+VL DA+ + +K G
Sbjct: 4 RPLDVIHKSLDK----EVLVILKRGAEYRGKLIGYDIHLNVVLADAQLIE-NGEPKKSYG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>gi|443719153|gb|ELU09428.1| hypothetical protein CAPTEDRAFT_156804 [Capitella teleta]
Length = 76
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD +MNLV+D+A E K + +G ++++G++ITL+
Sbjct: 27 VTGTLRGFDPFMNLVVDEAIE-QCKTGEQNSIGMVVVRGNSITLL 70
>gi|195144968|ref|XP_002013468.1| GL23390 [Drosophila persimilis]
gi|198477437|ref|XP_002136616.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
gi|194102411|gb|EDW24454.1| GL23390 [Drosophila persimilis]
gi|198142908|gb|EDY71620.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
Length = 103
Score = 37.7 bits (86), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L K + + + +++LR GR+ FD+++N+VL DAEE
Sbjct: 17 EPLDLIRLSLDEK--VYVKMRNERELR--GRLHAFDQHLNMVLGDAEETVTTVEIDEETY 72
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ K T++ + + ++GD + L+
Sbjct: 73 EEVYKTTKRTIPMLFVRGDGVILV 96
>gi|452823867|gb|EME30874.1| U6 snRNA-associated Sm-like protein LSm3 [Galdieria sulphuraria]
Length = 90
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK 68
++ QP++LI L + +++ + D + G++ FD++MNLVL D EE +K
Sbjct: 1 MIQQPLDLILLALDEEILVKL----RGDRELRGKLQAFDQHMNLVLSDVEETALKVEVDD 56
Query: 69 PLGRILLKG 77
G L+K
Sbjct: 57 ETGEELIKA 65
>gi|88604287|ref|YP_504465.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88189749|gb|ABD42746.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 80
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
I+G + G+D +MNLVLD AEE I + + +G ++++GDN+
Sbjct: 33 IKGVLQGYDVHMNLVLDKAEE--IVQGQAQSIGTLIIRGDNV 72
>gi|356501499|ref|XP_003519562.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 282
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 17/84 (20%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-------------IK 63
+ +++ + R+ I Q ++ G+ + FD +MNLVL D EE
Sbjct: 9 MLQYINYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGAD 64
Query: 64 KNTRKPLGRILLKGDNITLMMNTG 87
+ R+ LG +LL+G+ + M G
Sbjct: 65 REDRRTLGLVLLRGEEVISMTVEG 88
>gi|47211209|emb|CAF90166.1| unnamed protein product [Tetraodon nigroviridis]
Length = 268
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 20/87 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + RI I F+ FD++MNL+L D +E IK KN++
Sbjct: 16 MLQHIDFRMRCILQDGRIFIGTFK-----------AFDKHMNLILCDCDEFRKIKPKNSK 64
Query: 68 KP-------LGRILLKGDNITLMMNTG 87
+P LG +LL+G+N+ M G
Sbjct: 65 QPEREEKRVLGLVLLRGENLVSMTVEG 91
>gi|212223792|ref|YP_002307028.1| small nuclear ribonucleoprotein [Thermococcus onnurineus NA1]
gi|229559994|sp|B6YUU5.1|RUXX_THEON RecName: Full=Putative snRNP Sm-like protein
gi|212008749|gb|ACJ16131.1| Hypothetical small nuclear ribonucleoprotein [Thermococcus
onnurineus NA1]
Length = 78
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I R L + + +K G++IG+D ++N+VL AE + + +K G
Sbjct: 4 RPLDVIHRSLDK----DVLVILKKGFEFRGKLIGYDIHLNIVLAGAEMIQDGEVVKK-YG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>gi|219110255|ref|XP_002176879.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411414|gb|EEC51342.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 349
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVHIKK 64
Q + P L++ K R+++ L +R + G ++ FD++ NL+L D EEV+ K+
Sbjct: 210 QDLQEGPFALMYNTFVHKQRVRVVLRYVNGIRGIVTGYLVAFDKHFNLILRDVEEVYSKR 269
Query: 65 NTR 67
R
Sbjct: 270 AER 272
>gi|305662480|ref|YP_003858768.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304377049|gb|ADM26888.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 78
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G++ +D ++N+VLDDAEE + + + LG +L++G+N+ ++
Sbjct: 32 VRGKLRSYDLHLNIVLDDAEE-ELSDGSWRKLGTVLIRGENVVVI 75
>gi|347966098|ref|XP_003435864.1| AGAP013519-PA [Anopheles gambiae str. PEST]
gi|333470212|gb|EGK97549.1| AGAP013519-PA [Anopheles gambiae str. PEST]
Length = 101
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L K I + + +++LR GR+ FD+++N+VL DAEE
Sbjct: 14 EPLDLIRLSLDEK--IYVKMRYERELR--GRLHAFDQHLNMVLGDAEETVTTVEIDEETY 69
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ K T++ + + ++GD + L+
Sbjct: 70 EEVYKTTKRTIPMLFVRGDGVILV 93
>gi|440797084|gb|ELR18179.1| small nuclear ribonucleoprotein G, putative [Acanthamoeba
castellanii str. Neff]
Length = 76
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 19 RFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGD 78
R++ K I++ + R+ G + GFD++MNLVL+D E + + LG ++++G+
Sbjct: 11 RYMDKKLAIRL----NANRRVSGILRGFDQFMNLVLEDTVE-EVSSTEKNELGMVVIRGN 65
Query: 79 NITLM 83
++ L+
Sbjct: 66 SVILI 70
>gi|308321244|gb|ADO27774.1| small nuclear ribonucleoprotein g [Ictalurus furcatus]
Length = 76
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++G + GFD +MNLV+DD+ E+ + P+G ++++G++I ++
Sbjct: 26 HVQGILRGFDPFMNLVVDDSIEIS-AGGQQNPIGMVVIRGNSIIML 70
>gi|209881614|ref|XP_002142245.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557851|gb|EEA07896.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 155
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 11/69 (15%)
Query: 19 RFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIK------KNTRKPLG 71
+++ + R+ + Q D + G ++ FD++MN+VL D +E IK K ++ LG
Sbjct: 3 KYINYRVRVTV----QDDRMLVGNLMAFDKHMNVVLSDCQEYRSIKKKGEDLKEVKRSLG 58
Query: 72 RILLKGDNI 80
I+L+G+NI
Sbjct: 59 FIVLRGENI 67
>gi|242009034|ref|XP_002425298.1| snrnp sm protein, putative [Pediculus humanus corporis]
gi|212509063|gb|EEB12560.1| snrnp sm protein, putative [Pediculus humanus corporis]
Length = 102
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L RI + + +++LR GR+ +D+++N+VL DAEE
Sbjct: 15 EPLDLIR--LSLDERIYVKMRNERELR--GRLHAYDQHLNMVLGDAEETVTTVEIDEETY 70
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ K T++ + + ++GD + L+
Sbjct: 71 EEVYKTTKRTIPMLFVRGDGVILV 94
>gi|392592906|gb|EIW82232.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 77
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++++ Q ++ G + G+D ++NLV+DDA E + P+G ++++G+++T M
Sbjct: 16 KLFVHLQGGRKVSGILRGYDLFLNLVIDDALE-ESSPAQKHPIGTVVIRGNSVTSM 70
>gi|302694279|ref|XP_003036818.1| hypothetical protein SCHCODRAFT_47419 [Schizophyllum commune
H4-8]
gi|300110515|gb|EFJ01916.1| hypothetical protein SCHCODRAFT_47419 [Schizophyllum commune
H4-8]
Length = 77
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++++ Q ++ G + G+D ++NLV+D+A E + P+G ++++G+++T M
Sbjct: 16 KLFVHLQGGRKVSGTLRGYDLFLNLVIDEALE-ETTPGQKHPIGTVVIRGNSVTSM 70
>gi|383320207|ref|YP_005381048.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379321577|gb|AFD00530.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 74
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+IQ+ + +K++ +EG ++ D+Y+NL L D E+ + R LG ++L+G+NI L+
Sbjct: 14 KIQVEMKGEKNI-LEGTLVSADDYLNLHLVDTAEIQGGQKLRT-LGSVVLRGNNIILL 69
>gi|313215037|emb|CBY41217.1| unnamed protein product [Oikopleura dioica]
Length = 69
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK--PL 70
P+ L+ + + S RI I + + D I G ++GFDE++N+VL+D E + +K L
Sbjct: 7 PLELVDKCIGS--RIHIIM--RNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKL 62
Query: 71 GRILLKG 77
+ILL G
Sbjct: 63 EQILLNG 69
>gi|402861349|ref|XP_003895059.1| PREDICTED: small nuclear ribonucleoprotein G-like [Papio anubis]
Length = 76
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
R++G + GFD +MNLV+D+ E+ I + +G ++++G+NI ++
Sbjct: 26 RVQGILQGFDPFMNLVIDECVEMAI-SGQQNNIGMVVIRGNNIIML 70
>gi|195452910|ref|XP_002073554.1| GK14178 [Drosophila willistoni]
gi|194169639|gb|EDW84540.1| GK14178 [Drosophila willistoni]
Length = 256
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L K + + + +++LR GR+ FD+++N+VL DAEE
Sbjct: 170 EPLDLIRLSLDEK--VYVKMRNERELR--GRLHAFDQHLNMVLGDAEETVTTVEIDEETY 225
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ K T++ + + ++GD + L+
Sbjct: 226 EEVYKTTKRTIPMLFVRGDGVILV 249
>gi|409043237|gb|EKM52720.1| hypothetical protein PHACADRAFT_261323 [Phanerochaete carnosa
HHB-10118-sp]
Length = 94
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 4/48 (8%)
Query: 39 IEGRIIGFDEYMNLVLDDAEE-VHIK--KNTRKPLGRILLKGDNITLM 83
+ G + GFD+ +NLVLDD EE +H + +TR+ LG ++L+G +TL+
Sbjct: 30 VTGVLKGFDQLLNLVLDDVEEQLHTEPLPSTRQ-LGLVVLRGPTLTLL 76
>gi|393228545|gb|EJD36188.1| U6 snRNA-associated Sm-like protein LSm7 [Auricularia delicata
TFB-10046 SS5]
Length = 116
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEV--HIKKNTRKPLGRILLKGDNITLM 83
+ G + G+D+ +NLVLDD EEV + TRK LG +L+G +TL+
Sbjct: 54 VTGILKGYDQLLNLVLDDVEEVIQEPEPRTRK-LGLAVLRGPTVTLL 99
>gi|323456789|gb|EGB12655.1| hypothetical protein AURANDRAFT_60633 [Aureococcus anophagefferens]
Length = 779
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVHI----KKNT 66
P +++R L+ +A +++ L +R G + FD +MNLVL DA E + +
Sbjct: 155 PHGVLWRALRDRAAVKVVLRRVNCIRGSCVGLLKAFDRHMNLVLVDAAETTVPPMRNPDR 214
Query: 67 RKPLGR----ILLKGDNITLM 83
+P+ R +L++GDN+ L+
Sbjct: 215 ARPVTRFLKQVLIRGDNVVLV 235
>gi|363748558|ref|XP_003644497.1| hypothetical protein Ecym_1454 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888129|gb|AET37680.1| hypothetical protein Ecym_1454 [Eremothecium cymbalariae
DBVPG#7215]
Length = 76
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%), Gaps = 4/46 (8%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK-PLG-RILLKGDNIT 81
++ G + G+D ++N+VLDDA EVH KN RK PLG +++G++I
Sbjct: 24 KVVGVLRGYDVFLNVVLDDALEVH--KNGRKFPLGDHTVIRGNSIV 67
>gi|412991139|emb|CCO15984.1| predicted protein [Bathycoccus prasinos]
Length = 97
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLR-IEGRIIGFDEYMNLVLDDAEEV----HIKKNTR 67
P L+ + + K +W+ + + G + GFD Y+N VL+DA E K T
Sbjct: 19 PSELVDKCVNEK----VWIIMKNGHKEFTGTLKGFDVYVNCVLEDAIEYDRDQESGKETT 74
Query: 68 KPLGRILLKGDNITLMMNTGK 88
K L ILL G+NI +++ G+
Sbjct: 75 KNLESILLNGNNICMIVPGGE 95
>gi|308810487|ref|XP_003082552.1| putative small nuclear ribonucleoprotein E (ISS) [Ostreococcus
tauri]
gi|116061021|emb|CAL56409.1| putative small nuclear ribonucleoprotein E (ISS) [Ostreococcus
tauri]
Length = 101
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
R++ K R+++ + + G + GFD+++NLVLDD+ + T P+G ++++G
Sbjct: 28 LRYMDKKLRLRL----NGNRSVTGILRGFDQFLNLVLDDSTNDTTTEKT--PMGMVVVRG 81
Query: 78 DNITLM 83
+++ M
Sbjct: 82 NSVVSM 87
>gi|187610687|gb|ACD13592.1| small nuclear ribonucleoprotein polypeptide G [Penaeus monodon]
gi|408842889|gb|AFU93450.1| small nuclear ribonucleoprotein polypeptide G [Litopenaeus
vannamei]
Length = 77
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+EG + GFD +MNLV+DD EV + R +G ++++G +I ++
Sbjct: 27 VEGTLRGFDPFMNLVVDDGVEVR-RSGDRVRVGFVVIRGSSIIML 70
>gi|67468165|ref|XP_650141.1| small nuclear ribonucleo protein G [Entamoeba histolytica
HM-1:IMSS]
gi|56466712|gb|EAL44755.1| small nuclear ribonucleo protein G, putative [Entamoeba
histolytica HM-1:IMSS]
gi|407041678|gb|EKE40885.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449707868|gb|EMD47446.1| small nuclear ribonucleo protein G, putative [Entamoeba
histolytica KU27]
Length = 81
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRK--PLGRILLKGDNI 80
G + G+DEYMNLVLD+A + +T K P+G I+++G++I
Sbjct: 28 GVLSGYDEYMNLVLDEAYDAS-NPDTDKHIPIGMIMIRGNSI 68
>gi|448084481|ref|XP_004195616.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
gi|359377038|emb|CCE85421.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ +I + + K I++ L K+ G ++GFD+Y+N+VL++ EE + K + +
Sbjct: 20 PLEVIDKSIGHK--IRVLLTNTKEFH--GTLVGFDDYVNVVLENVEEFDGDAASGKIVKK 75
Query: 73 ILLKGDNITLMM 84
+LL G I +++
Sbjct: 76 MLLNGGQIAMLV 87
>gi|91774104|ref|YP_566796.1| small nuclear ribonucleoprotein [Methanococcoides burtonii DSM
6242]
gi|121684189|sp|Q12U30.1|RUXX_METBU RecName: Full=Putative snRNP Sm-like protein
gi|91713119|gb|ABE53046.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 72
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
G + G+D +MNLVLD+AEE+ + RK +G ++++GDN+ +
Sbjct: 29 GVLQGYDVHMNLVLDEAEELKDGEIVRK-IGGVVIRGDNVVYV 70
>gi|21730739|pdb|1LJO|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm2) From
Archaeoglobus Fulgidus At 1.95a Resolution
Length = 77
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
G++ G D+YMNL L +A E ++ R LG I+L+G+N+ L+
Sbjct: 31 GKLEGVDDYMNLYLTNAMECKGEEKVRS-LGEIVLRGNNVVLI 72
>gi|397621815|gb|EJK66477.1| hypothetical protein THAOC_12605 [Thalassiosira oceanica]
Length = 112
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 52/96 (54%), Gaps = 15/96 (15%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
ST + + P N++++ + K Q+ + + + ++ GR+ +D +MNL+L+D +E+
Sbjct: 9 STGTTDLKSGPFNVLYKAV--KGNTQVLVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWT 66
Query: 63 KK-------------NTRKPLGRILLKGDNITLMMN 85
++ N + + ++ L+GD++ L+++
Sbjct: 67 EQSKGGKGKKRGTSVNKDRYVSKMFLRGDSVILVVS 102
>gi|11497974|ref|NP_069198.1| snRNP [Archaeoglobus fulgidus DSM 4304]
gi|2650273|gb|AAB90874.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 75
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
G++ G D+YMNL L +A E ++ R LG I+L+G+N+ L+
Sbjct: 29 GKLEGVDDYMNLYLTNAMECKGEEKVRS-LGEIVLRGNNVVLI 70
>gi|357122008|ref|XP_003562708.1| PREDICTED: probable small nuclear ribonucleoprotein G-like
[Brachypodium distachyon]
Length = 80
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
G + GFD++MNLV+D+ EV+ N R +G ++L+G+++ ++
Sbjct: 30 GTLRGFDQFMNLVVDNTVEVN--GNDRNDIGMVVLRGNSVVMI 70
>gi|294950648|ref|XP_002786721.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
gi|239901040|gb|EER18517.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
Length = 87
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 19 RFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGD 78
RF++ + +++ D + G + G+D++MNLVLD+A E+ + + ++ +G +++G+
Sbjct: 19 RFMEKRIDVKL----NADRHVVGVVRGYDQFMNLVLDNAVEL-VSRTEKREIGMAVIRGN 73
Query: 79 NITL 82
+I +
Sbjct: 74 SILM 77
>gi|390960267|ref|YP_006424101.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
gi|390518575|gb|AFL94307.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
Length = 76
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I R L + + ++ GR+IG+D ++N+VL DA + + ++ G
Sbjct: 4 RPLDVIHRSLDK----DVLVLLKRGSEFRGRLIGYDIHLNVVLADAALIQDGEEVKR-YG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>gi|300122521|emb|CBK23091.2| unnamed protein product [Blastocystis hominis]
Length = 74
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 37 LRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
L +GR++ FD YMNL L + EE ++ + LG +L++ +N+
Sbjct: 14 LEYQGRLVSFDSYMNLQLSNCEE-YVDGKSTALLGDVLIRCNNV 56
>gi|399217788|emb|CCF74675.1| unnamed protein product [Babesia microti strain RI]
Length = 138
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 15/70 (21%)
Query: 26 RIQIWL------FEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IKKNT--------RKPL 70
R+Q WL + + R G I FD +MNLVL D EE IKK ++ L
Sbjct: 6 RMQQWLNYRVRVIIKDNRRFIGVFIAFDRHMNLVLADCEEYRMIKKQPSDKEPVEIKRTL 65
Query: 71 GRILLKGDNI 80
G +LL+G+N+
Sbjct: 66 GFVLLRGENV 75
>gi|356553373|ref|XP_003545031.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 281
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 17/84 (20%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-------------K 63
+ +++ + R+ I Q ++ G+ + FD +MNLVL D EE
Sbjct: 9 MLQYINYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGGD 64
Query: 64 KNTRKPLGRILLKGDNITLMMNTG 87
+ R+ LG +LL+G+ + M G
Sbjct: 65 REDRRTLGLVLLRGEEVISMTVEG 88
>gi|189193623|ref|XP_001933150.1| hypothetical protein PTRG_02817 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187978714|gb|EDU45340.1| hypothetical protein PTRG_02817 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 86
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 18/69 (26%)
Query: 37 LRIEGRIIGFDEYMNLVLDDAEEVH------------IKKNTRKP------LGRILLKGD 78
L G+++GFD+Y+N+VL+D E++ + P L +ILL G+
Sbjct: 9 LEFTGKLVGFDDYVNMVLEDVTEMYRQPLIAINMDFVTNADGSDPAEGNIKLPKILLNGN 68
Query: 79 NITLMMNTG 87
NI +M+ G
Sbjct: 69 NICMMVPGG 77
>gi|302348366|ref|YP_003816004.1| small nucleolar RNP protein Sm [Acidilobus saccharovorans 345-15]
gi|302328778|gb|ADL18973.1| Putative small nucleolar RNP protein Sm [Acidilobus
saccharovorans 345-15]
Length = 92
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA+++ +R++ R+L+ QI++ + G+++ D MNLVLD++ EV
Sbjct: 1 MAASQEKRVVNP-----LRYLRDAVDSQIYVKLKDGTEYVGQLLVTDSTMNLVLDNSVEV 55
Query: 61 HIKKNTRKPLGRILLKG 77
K LG+IL++G
Sbjct: 56 KDGKQIVARLGKILIRG 72
>gi|156544183|ref|XP_001606444.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Nasonia
vitripennis]
Length = 225
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVHIKKNTRK 68
P+ ++F++++++ R++++ +R +E + FD + NL L+D E+ +K RK
Sbjct: 115 PLGVLFQYMENRIRVKVYTRNANGIRGHVEAYVAAFDRHWNLALEDCLELWTRKVKRK 172
>gi|126644035|ref|XP_001388176.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117253|gb|EAZ51353.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 139
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 21 LQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-HIKKNT-----RKPLGRIL 74
+Q +I + Q D + G ++ FD +MNLVL D +E +KK ++ LG I+
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEESKELKRSLGLIM 60
Query: 75 LKGDNI 80
L+G+NI
Sbjct: 61 LRGENI 66
>gi|403360308|gb|EJY79824.1| Small nuclear ribonucleoprotein B' [Oxytricha trifallax]
gi|403374056|gb|EJY86961.1| Small nuclear ribonucleoprotein B' [Oxytricha trifallax]
Length = 198
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTR---------KPLGRILLKGDNITLM 83
G I FD++MNLVL D EE K R + LG +LL+G+NI M
Sbjct: 4 GTFIAFDKHMNLVLADTEEYRKIKPKRPEDKERELKRALGLVLLRGENIVTM 55
>gi|145356505|ref|XP_001422469.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582712|gb|ABP00786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M++ + + +P++LI L K +++ + D GR+ +D+++N++L D EEV
Sbjct: 1 MSAAEEDAAVREPLDLIRLALDEKVYVKL----RGDREARGRLHAYDQHLNMILGDVEEV 56
Query: 61 ------------HIKKNTRKPLGRILLKGDNITLM 83
K T++ + + ++GD +TL+
Sbjct: 57 ITSTETDEETFEEFTKTTKRSVPFLFIRGDAVTLV 91
>gi|412991162|emb|CCO16007.1| predicted protein [Bathycoccus prasinos]
Length = 246
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEE 59
P++L++R L K R++I ++ +R +E I FD+Y N V D EE
Sbjct: 116 PLSLLYRALHEKKRVKIVTRNERGVRGCMECNISAFDKYFNFVAHDIEE 164
>gi|307105891|gb|EFN54138.1| hypothetical protein CHLNCDRAFT_135527 [Chlorella variabilis]
Length = 159
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
Query: 39 IEGRIIGFDEYMNLVLDDAEE----------VHIKKNTRKPLGRILLKGDNIT 81
I GR + FD +MNLVL DAEE + R+ LG ++L+GD +
Sbjct: 26 IVGRFMAFDRHMNLVLGDAEEFRKLPPKKGVAEEDREQRRVLGLVILRGDEVV 78
>gi|405119724|gb|AFR94496.1| U6 snRNA binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 131
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 45 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 86
G+D+ MNLV+DD E + + LG ++L+G NI L+ T
Sbjct: 53 GYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNIVLVSPT 94
>gi|390331570|ref|XP_788177.3| PREDICTED: small nuclear ribonucleoprotein G-like
[Strongylocentrotus purpuratus]
Length = 77
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
R+ G + GFD +MNLV+D+A E I + +G ++++G++I L+
Sbjct: 26 RVTGVLRGFDPFMNLVIDEATE-DISTTQKNDIGMVVVRGNSIILL 70
>gi|168063950|ref|XP_001783930.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664560|gb|EDQ51275.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 356
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 4 TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGF----DEYMNLVLDDAEE 59
T +I P+ L+ R + +ARIQ+W +R G ++GF D++ N+VL D +E
Sbjct: 206 TIADKIRQGPLGLLVRCYEERARIQVWTRHTHGIR--GTMVGFVRALDKHFNMVLHDVDE 263
>gi|307353828|ref|YP_003894879.1| small nuclear riboprotein-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157061|gb|ADN36441.1| Like-Sm ribonucleoprotein core [Methanoplanus petrolearius DSM
11571]
Length = 78
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
PI ++ + SK ++I E K LR GR++ DE++N+ +D A E ++ R LG
Sbjct: 8 PIKKVYALIDSKIIVEIK-DEPKTLR--GRLVAVDEHLNIHMDQACEYEGEERGRN-LGT 63
Query: 73 ILLKGDNI 80
++++G NI
Sbjct: 64 LVIRGSNI 71
>gi|126138356|ref|XP_001385701.1| hypothetical protein PICST_23784 [Scheffersomyces stipitis CBS
6054]
gi|126092979|gb|ABN67672.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 73
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 34/57 (59%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMM 84
+I + D G+++GFD+++N+VL+D E+ + K + ++LL G + +++
Sbjct: 15 EIRVLMTNDKEFTGKLVGFDDFVNMVLEDVREIDSDVKSDKVIKKMLLNGGQVAMII 71
>gi|291001751|ref|XP_002683442.1| predicted protein [Naegleria gruberi]
gi|284097071|gb|EFC50698.1| predicted protein [Naegleria gruberi]
Length = 89
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEV------HIKKNTRKPLGRILLKGDNITLM 83
+EG +IGFD +MN+ L++A ++ N + LG ++++G++I +M
Sbjct: 27 HVEGTMIGFDPFMNITLENAYDLTGFSKGEANTNEKTHLGTVVVRGNSIEMM 78
>gi|58261590|ref|XP_568205.1| U6 snRNA binding protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115921|ref|XP_773347.1| hypothetical protein CNBI2880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255971|gb|EAL18700.1| hypothetical protein CNBI2880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230287|gb|AAW46688.1| U6 snRNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 131
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 86
G + G+D+ MNLV+DD E + + LG ++L+G NI L+ T
Sbjct: 49 GILKGYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNIVLVSPT 94
>gi|427782609|gb|JAA56756.1| Putative small nuclear ribonucleoprotein-associated protein b and
b' [Rhipicephalus pulchellus]
Length = 239
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 21/81 (25%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV--------- 60
M Q IN R + +RI I F+ FD++MNL+L D EE
Sbjct: 9 MLQHINYRMRVILQDSRIFIGTFKA-----------FDKHMNLILGDCEEFRKVKGKSQA 57
Query: 61 -HIKKNTRKPLGRILLKGDNI 80
H + ++ LG +LL+G+NI
Sbjct: 58 RHGDREEKRVLGLVLLRGENI 78
>gi|297799992|ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
gi|297313716|gb|EFH44139.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 15/83 (18%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-----------VHIKKN 65
+ +F+ + R+ I Q ++ G+ + FD +MNLVL D EE ++ ++
Sbjct: 9 MLQFINYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEERE 64
Query: 66 TRKPLGRILLKGDNITLMMNTGK 88
R+ LG +LL+G+ + M G
Sbjct: 65 DRRTLGLVLLRGEEVISMTVEGP 87
>gi|398016803|ref|XP_003861589.1| Lsm7p protein, putative [Leishmania donovani]
gi|322499816|emb|CBZ34889.1| Lsm7p protein, putative [Leishmania donovani]
Length = 91
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 31 LFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 85
+ QK+ + G + GFD +NLVL DAE H + RK +G +++G + L+++
Sbjct: 27 VVSQKNHEVHGVLKGFDNNVNLVLADAELWHRNTHIRK-IGACVVRGGPVNLILS 80
>gi|321263450|ref|XP_003196443.1| U6 snRNA binding protein [Cryptococcus gattii WM276]
gi|317462919|gb|ADV24656.1| U6 snRNA binding protein, putative [Cryptococcus gattii WM276]
Length = 111
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 86
G + G+D+ MNLV+DD E + + LG ++L+G NI L+ T
Sbjct: 49 GILKGYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNIVLVSPT 94
>gi|242059351|ref|XP_002458821.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
gi|194699902|gb|ACF84035.1| unknown [Zea mays]
gi|195628156|gb|ACG35908.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|195643108|gb|ACG41022.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|241930796|gb|EES03941.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
Length = 98
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 51/95 (53%), Gaps = 16/95 (16%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA+ + + + +P++LI L RI + L ++LR G++ +D+++N++L D EEV
Sbjct: 1 MAAAEEEIAVKEPLDLIR--LSLDERIYVKLRSDRELR--GKLHAYDQHLNMILGDVEEV 56
Query: 61 ------------HIKKNTRKPLGRILLKGDNITLM 83
I + T++ + + ++GD + L+
Sbjct: 57 VTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVILV 91
>gi|91087977|ref|XP_973274.1| PREDICTED: similar to LSM Sm-like protein family member
[Tribolium castaneum]
gi|270011905|gb|EFA08353.1| hypothetical protein TcasGA2_TC005996 [Tribolium castaneum]
Length = 101
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 44/84 (52%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++L+ L + I++ + D I GR+ +D++MN++L DAEE
Sbjct: 15 EPLDLVRLSLDER----IYVKMRNDREIRGRLHAYDQHMNMILSDAEETITTVEIDEETY 70
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ + T++ + + ++GD + L+
Sbjct: 71 EEVYRTTKRNIPMLFVRGDGVILV 94
>gi|428181287|gb|EKX50151.1| small nuclear ribonucleo protein polypeptide G [Guillardia theta
CCMP2712]
Length = 78
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
I G + G+D++MNLVLD +EV + R +G ++++G++I+++
Sbjct: 27 ITGILRGYDQFMNLVLDHTQEV-VTPTQRNEIGMVVVRGNSISMV 70
>gi|402220188|gb|EJU00260.1| U6 snRNA-associated Sm-like protein LSm7 [Dacryopinax sp. DJM-731
SS1]
Length = 120
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 34 QKDLRIEGRIIGFDEYMNLVLDD-AEEVHIKKNTRKPLGRILLKGDNITLM 83
Q + G + GFD+ MNLVLDD E + + ++ LG ++L+G ITL+
Sbjct: 52 QGGREVTGVLKGFDQLMNLVLDDVVENLSSEPPKQRNLGLVVLRGPTITLL 102
>gi|429327225|gb|AFZ78985.1| U6 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 93
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 19/97 (19%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MA+T + QP+++I L I+L + I GR+ +DE+ N++L DA+E
Sbjct: 1 MATTGS---LQQPLDMIRLNLDEV----IYLRCKGGREIVGRLHAYDEHCNMILSDAKET 53
Query: 61 ------------HIKKNTRKPLGRILLKGDNITLMMN 85
IKK+ ++ G + ++GD++ L+ +
Sbjct: 54 ITTAEIEPTTNEEIKKSVQRDSGTVFIRGDSLILLSH 90
>gi|409095290|ref|ZP_11215314.1| small nuclear ribonucleoprotein [Thermococcus zilligii AN1]
Length = 76
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I R L + + +K G++IG+D ++N+VL DA+ + K G
Sbjct: 4 RPLDIIHRSLDR----DVLVLLKKGGEFRGKLIGYDIHLNVVLADADYIQ-DGEVVKRYG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVVRGDNV 67
>gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|30685110|ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|79325195|ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|238480869|ref|NP_001154258.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana]
gi|332658930|gb|AEE84330.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658931|gb|AEE84331.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658932|gb|AEE84332.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658933|gb|AEE84333.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
Length = 257
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 15/83 (18%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-----------VHIKKN 65
+ +F+ + R+ I Q ++ G+ + FD +MNLVL D EE ++ ++
Sbjct: 9 MLQFINYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEERE 64
Query: 66 TRKPLGRILLKGDNITLMMNTGK 88
R+ LG +LL+G+ + M G
Sbjct: 65 DRRTLGLVLLRGEEVISMTVEGP 87
>gi|170029969|ref|XP_001842863.1| snrnp sm protein [Culex quinquefasciatus]
gi|167865323|gb|EDS28706.1| snrnp sm protein [Culex quinquefasciatus]
Length = 101
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L K I + + +++LR GR+ FD+++N+VL DAEE
Sbjct: 14 EPLDLIRLSLDEK--IYVKMRNERELR--GRLHAFDQHLNMVLGDAEETVTTVEIDEETY 69
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ K +++ + + ++GD + L+
Sbjct: 70 EEVYKTSKRTIPMLFVRGDGVILV 93
>gi|254567409|ref|XP_002490815.1| Small nuclear ribonucleoprotein G [Komagataella pastoris GS115]
gi|238030611|emb|CAY68535.1| Small nuclear ribonucleoprotein G [Komagataella pastoris GS115]
gi|328351196|emb|CCA37596.1| U6 snRNA-associated Sm-like protein LSm6 [Komagataella pastoris
CBS 7435]
Length = 77
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 19 RFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTR-KPLGRILLKG 77
++L + ++I Q IEG + G+D ++NL LDD +V+ P+G +L+G
Sbjct: 10 KYLHHRISVKINAGRQ----IEGLLTGYDVFLNLTLDDCVQVNPSNRAEDTPVGSCVLRG 65
Query: 78 DNI 80
+++
Sbjct: 66 NSV 68
>gi|302348719|ref|YP_003816357.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
gi|302329131|gb|ADL19326.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
Length = 78
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
F+ + +++ + ++G + FD+++NLVL++AEE + + + LG +L++G
Sbjct: 11 FKVMNEYLNASVYVKLKGGEGVKGVLKSFDQHLNLVLENAEE--LTERGSRSLGTVLVRG 68
Query: 78 DNI 80
D+I
Sbjct: 69 DSI 71
>gi|284162105|ref|YP_003400728.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284012102|gb|ADB58055.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 74
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P++++ + LQ+ + + L ++ R G + G+D +MN+VL++AEE+ + RK LG
Sbjct: 4 RPLDVLNKALQTP--VLVRLKGGREFR--GILNGYDIHMNIVLENAEEIQNGEVVRK-LG 58
Query: 72 RILLKGDNITLM 83
++++GD + +
Sbjct: 59 SVVIRGDTVVFV 70
>gi|342326346|gb|AEL23088.1| small nuclear ribonucleoprotein polypeptide G [Cherax
quadricarinatus]
Length = 77
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+EG + GFD +MNLV+DD E K R +G ++++G +I ++
Sbjct: 27 VEGTLRGFDPFMNLVVDDGVEAR-KTGDRVRIGVVVIRGSSIIML 70
>gi|308161048|gb|EFO63510.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
P15]
Length = 132
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
RI + L Q + I G + FDE+MNL+L +AEE N PL ++++GD+I
Sbjct: 70 RISVLL--QNNSSITGLLASFDEHMNLILINAEETGHSLNRFFPL--LVIRGDSI 120
>gi|408404417|ref|YP_006862400.1| snRNP Sm-like protein [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408365013|gb|AFU58743.1| putative snRNP Sm-like protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 145
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P++ + R + K +++ + ++ +GR+ D YMNL+L DAEE + + G
Sbjct: 73 RPLSTLQRAINRKVAVRL----KSEIEYKGRMNNVDSYMNLILTDAEEFN-GSDVLANYG 127
Query: 72 RILLKGDNI 80
+++++G+N+
Sbjct: 128 KVVIRGNNV 136
>gi|126460705|ref|YP_001056983.1| LSM family small nuclear ribonucleoprotein [Pyrobaculum
calidifontis JCM 11548]
gi|126250426|gb|ABO09517.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
calidifontis JCM 11548]
Length = 86
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+ + Q + PI ++ + L + ++ + + ++G + +D MNLVLDDA E+
Sbjct: 1 MSKSSQQVKLPSPIKVLTKMLNKEVVARL----KGGIAVKGVLTAYDSCMNLVLDDAAEL 56
Query: 61 HIKKNTRKPLGRILLKGDNI 80
GRI+++G +
Sbjct: 57 DRSGEPVTRYGRIVVRGSQV 76
>gi|302768987|ref|XP_002967913.1| hypothetical protein SELMODRAFT_227744 [Selaginella
moellendorffii]
gi|300164651|gb|EFJ31260.1| hypothetical protein SELMODRAFT_227744 [Selaginella
moellendorffii]
Length = 81
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD++MNLVLD+ E I N R +G ++++G+++ ++
Sbjct: 28 VVGVLRGFDQFMNLVLDNTME--ISGNERTEIGMVVIRGNSVAMI 70
>gi|386875950|ref|ZP_10118098.1| hypothetical protein BD31_I1425 [Candidatus Nitrosopumilus
salaria BD31]
gi|386806240|gb|EIJ65711.1| hypothetical protein BD31_I1425 [Candidatus Nitrosopumilus
salaria BD31]
Length = 46
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 47 DEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
D YMNL++ DAEE+H K T GR++++G+N+
Sbjct: 5 DSYMNLIMTDAEELHDGK-TIANYGRVIVRGNNV 37
>gi|332373734|gb|AEE62008.1| unknown [Dendroctonus ponderosae]
Length = 101
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++L+ L K I++ + D ++GR+ +D++MN++L D EE
Sbjct: 15 EPLDLVRLSLDEK----IYVKMRNDRELKGRLHAYDQHMNMILSDVEETITTVEIDEETY 70
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ K+T++ + + ++GD + L+
Sbjct: 71 EEVYKSTKRNIPMLFVRGDGVILV 94
>gi|327401120|ref|YP_004341959.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
gi|327316628|gb|AEA47244.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
Length = 74
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
+P++++ + LQ+ + + L ++ R G + G+D +MNLVL +AEE+ + RK L
Sbjct: 3 NRPLDVLNKALQTP--VLVRLKGGREFR--GILNGYDIHMNLVLQNAEEIQGGEVIRK-L 57
Query: 71 GRILLKGDNITLM 83
G ++++GD + +
Sbjct: 58 GSVVIRGDTVVFV 70
>gi|402590109|gb|EJW84040.1| hypothetical protein WUBG_05049 [Wuchereria bancrofti]
Length = 79
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 39/60 (65%), Gaps = 7/60 (11%)
Query: 30 WLFEQKDLRIEGR------IIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++ +Q DL++ G + GFD +MN+V++DA E ++K + +G ++++G++I +M
Sbjct: 12 YMDKQVDLKLNGNRSVSGILRGFDPFMNIVVEDAVE-NLKSGDKNEIGMVVIRGNSIVIM 70
>gi|282164085|ref|YP_003356470.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282156399|dbj|BAI61487.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 74
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+IQ+ + +K++ +EG ++ D+Y+NL + D E+ + R LG ++L+G+NI L+
Sbjct: 14 KIQVEMKGEKNI-LEGTLVSADDYLNLHMVDTTEIQGGQKLRT-LGSVVLRGNNIILL 69
>gi|159118879|ref|XP_001709658.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
gi|157437775|gb|EDO81984.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
Length = 126
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
R+ + L Q + I G + FDE+MNL+L +AEE N PL ++++GD+I
Sbjct: 64 RVSVLL--QNNSSITGLLASFDEHMNLILINAEETGHSLNRFFPL--LVIRGDSI 114
>gi|124484977|ref|YP_001029593.1| hypothetical protein Mlab_0149 [Methanocorpusculum labreanum Z]
gi|124362518|gb|ABN06326.1| Like-Sm ribonucleoprotein, core [Methanocorpusculum labreanum Z]
Length = 75
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
I G + G+D +MNLVLD AEE +N LG ++++GDN+
Sbjct: 28 IRGVLQGYDVHMNLVLDKAEEE--GENGTVSLGTLIVRGDNV 67
>gi|327288953|ref|XP_003229189.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Anolis carolinensis]
Length = 318
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 20/87 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + R+ I F+ FD++MNL+L D +E IK KN++
Sbjct: 87 MLQHIDYRMRCILQDGRVFIGTFK-----------AFDKHMNLILCDCDEFRKIKPKNSK 135
Query: 68 KP-------LGRILLKGDNITLMMNTG 87
+P LG +LL+G+N+ M G
Sbjct: 136 QPEREEKRVLGLVLLRGENLVSMTVEG 162
>gi|116780179|gb|ABK21578.1| unknown [Picea sitchensis]
gi|116780948|gb|ABK21894.1| unknown [Picea sitchensis]
Length = 80
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD++MNLVLD EV+ N R +G ++++G+++ ++
Sbjct: 28 VVGTLRGFDQFMNLVLDGTVEVN--GNERNEIGMVVIRGNSVVMI 70
>gi|145527883|ref|XP_001449741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417330|emb|CAK82344.1| unnamed protein product [Paramecium tetraurelia]
Length = 85
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 28 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKN--TRKPLGRILLKGDNITLM 83
QI++ + ++ ++G ++ +D ++N+++ AEE ++ T++ L + L+GD I L+
Sbjct: 18 QIYIKMRNNIELKGTLVSYDNHLNMIISKAEETSFQEGIKTKRKLDALYLRGDGIILI 75
>gi|432329499|ref|YP_007247642.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432136208|gb|AGB01135.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 75
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
I G + G+D +MNLVLD AEEV + + +G ++++GDN+
Sbjct: 28 IRGVLQGYDVHMNLVLDKAEEV--ENGQVQKVGTLIVRGDNV 67
>gi|72008835|ref|XP_786272.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Strongylocentrotus purpuratus]
Length = 105
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 16/94 (17%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV- 60
A ++ + +P++LI L + I++ + D ++GR+ +D+++N++L D EE
Sbjct: 7 APSQPANTVEEPLDLIRLSLDER----IYVKMRNDRELKGRLHAYDQHLNMILGDVEETV 62
Query: 61 -----------HIKKNTRKPLGRILLKGDNITLM 83
I K+T++ + + ++GD + L+
Sbjct: 63 TAVEIDEETYEEIYKSTKRSIQMLFVRGDGVILV 96
>gi|303276466|ref|XP_003057527.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461879|gb|EEH59172.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 77
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
R++ K R+++ + + G + GFD+++NLVLD E V + ++PLG ++++G
Sbjct: 4 LRYMDKKLRLKL----NGNRGVVGVLRGFDQFLNLVLD--ECVDDSTSDKEPLGMVVVRG 57
Query: 78 DNITLM 83
++I+ +
Sbjct: 58 NSISAL 63
>gi|145353525|ref|XP_001421061.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581297|gb|ABO99354.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 72
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD+++N+VLDDA + T P+G I+++G+++ M
Sbjct: 15 VVGTLRGFDQFLNVVLDDATNDTTSEKT--PMGMIVVRGNSVVSM 57
>gi|312385157|gb|EFR29724.1| hypothetical protein AND_23652 [Anopheles darlingi]
Length = 64
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD +MN+VLD++ E K TR +G ++++G++I L+
Sbjct: 15 VSGILRGFDPFMNVVLDESIE-ECKDGTRNNIGMVVIRGNSIILV 58
>gi|170291130|ref|YP_001737946.1| like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175210|gb|ACB08263.1| Like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 78
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVH-IKKNTRKPLGRILLKGDNI 80
+I G++I +DE MNLVLD A EV ++ +G + ++G+N+
Sbjct: 29 QIVGKLIVYDEMMNLVLDSAREVDPASGEVKRSVGTLFIRGNNV 72
>gi|85119473|ref|XP_965639.1| hypothetical protein NCU02508 [Neurospora crassa OR74A]
gi|28927451|gb|EAA36403.1| predicted protein [Neurospora crassa OR74A]
gi|336464924|gb|EGO53164.1| hypothetical protein NEUTE1DRAFT_126545 [Neurospora tetrasperma
FGSC 2508]
gi|350297029|gb|EGZ78006.1| Sm-like ribonucleoprotein [Neurospora tetrasperma FGSC 2509]
Length = 213
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 12/70 (17%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MAST Q M IN R+++ L + + + G+++ FD++MNLVL DAEE
Sbjct: 1 MASTNKQGKMAGYINY---------RMRVTLNDGRQM--TGQMLAFDKHMNLVLADAEEF 49
Query: 61 -HIKKNTRKP 69
IK+ KP
Sbjct: 50 RRIKRRQNKP 59
>gi|18977914|ref|NP_579271.1| small nuclear ribonucleoprotein [Pyrococcus furiosus DSM 3638]
gi|397652035|ref|YP_006492616.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
gi|23822154|sp|Q8U0P4.1|RUXX_PYRFU RecName: Full=Putative snRNP Sm-like protein
gi|18893680|gb|AAL81666.1| small nuclear ribonucleoprotein, putative [Pyrococcus furiosus
DSM 3638]
gi|393189626|gb|AFN04324.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
Length = 76
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I + L + + +K G++IG+D ++N+VL +AE + + +K G
Sbjct: 4 RPLDVIHKSLDK----DVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDGEVVKK-YG 58
Query: 72 RILLKGDNITLMMNT 86
+I+++GDN+ + T
Sbjct: 59 KIVIRGDNVLAISPT 73
>gi|405956996|gb|EKC23235.1| U7 snRNA-associated Sm-like protein LSm11 [Crassostrea gigas]
Length = 338
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 4 TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVH 61
T+++ + P++++ R + + IQ+W+ DLR +G ++ FD++ NL + D +E++
Sbjct: 138 TRMEGYVRGPLSVLQRCVTERLLIQVWIRSAVDLRGMCKGYLVAFDKHFNLAMIDVDELY 197
>gi|430814458|emb|CCJ28305.1| unnamed protein product [Pneumocystis jirovecii]
Length = 50
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 59
P+ L+ + + S+ IW+ + D G ++GFD+Y+N+VL D E
Sbjct: 8 PLELVDKCVGSR----IWVVMKGDTEFSGILLGFDDYVNMVLQDVTE 50
>gi|21228485|ref|NP_634407.1| small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
gi|20906968|gb|AAM32079.1| Small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
Length = 74
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+RIQ+ + +L +EG + D+YMNL L D E+ +K + LG ++L+G+NI L+
Sbjct: 13 SRIQVEMKGDLNL-LEGTLKSVDDYMNLHLVDTMEI-VKGEKVRSLGSVVLRGNNIILI 69
>gi|170576974|ref|XP_001893831.1| small nuclear ribonucleoprotein G [Brugia malayi]
gi|312077085|ref|XP_003141148.1| small nuclear ribonucleoprotein G [Loa loa]
gi|158599912|gb|EDP37330.1| small nuclear ribonucleoprotein G, putative [Brugia malayi]
gi|307763686|gb|EFO22920.1| small nuclear ribonucleoprotein G [Loa loa]
Length = 79
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 39/60 (65%), Gaps = 7/60 (11%)
Query: 30 WLFEQKDLRIEGR------IIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++ +Q DL++ G + GFD +MN+V++DA E ++K + +G ++++G++I +M
Sbjct: 12 YMDKQVDLKLNGNRSVSGILRGFDPFMNIVVEDAVE-NLKNGDKNEIGMVVIRGNSIVIM 70
>gi|284413738|ref|NP_001165121.1| small nuclear ribonucleoprotein polypeptide G [Xenopus laevis]
gi|114107958|gb|AAI23340.1| MGC154809 protein [Xenopus laevis]
Length = 76
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+++G + GFD +MNLVLD++ E+ N + +G ++++G++I ++
Sbjct: 26 QVQGILRGFDPFMNLVLDESTEISGSGN-QNSIGMVVIRGNSIIML 70
>gi|73671030|ref|YP_307045.1| small nuclear riboprotein-like protein [Methanosarcina barkeri
str. Fusaro]
gi|72398192|gb|AAZ72465.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 74
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+RIQ+ + +L +EG + D+YMNL L D E+ +K + LG ++L+G+NI L+
Sbjct: 13 SRIQVEMKGDLNL-LEGTLKSVDDYMNLHLVDTMEI-VKGEKVRSLGSVVLRGNNIILI 69
>gi|340505820|gb|EGR32114.1| small nuclear ribonucleoprotein, putative [Ichthyophthirius
multifiliis]
Length = 85
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
R++G + G D YMN+VL++A+E+ I K+ +G+ +++G++I
Sbjct: 35 RVQGVVKGHDNYMNIVLENAQEL-IGKDKVNNIGKAVVRGNSI 76
>gi|351724771|ref|NP_001236557.1| uncharacterized protein LOC100306547 [Glycine max]
gi|255628849|gb|ACU14769.1| unknown [Glycine max]
Length = 97
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 16/93 (17%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-- 60
ST+ + + +P++LI L RI + L ++LR G++ +D+++N++L D EE+
Sbjct: 2 STEEESAVKEPLDLIR--LSLDERIYVKLRSDRELR--GKLHAYDQHLNMILGDVEEIIT 57
Query: 61 ----------HIKKNTRKPLGRILLKGDNITLM 83
I + T++ + + ++GD + L+
Sbjct: 58 TVEIDDETYEEIVRTTKRTVPFLFVRGDGVILV 90
>gi|73670936|ref|YP_306951.1| small nuclear ribonucleoprotein [Methanosarcina barkeri str.
Fusaro]
gi|121724584|sp|Q465S1.1|RUXX_METBF RecName: Full=Putative snRNP Sm-like protein
gi|72398098|gb|AAZ72371.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 72
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
G + G+D +MNLVLD+AEE+ + K G ++++GDN+ +
Sbjct: 29 GELKGYDIHMNLVLDNAEELREGEVVSK-FGSVVIRGDNVVYV 70
>gi|224117856|ref|XP_002317685.1| predicted protein [Populus trichocarpa]
gi|222860750|gb|EEE98297.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE------VHIKKNT---- 66
+ +++ + R+ I Q ++ G+ + FD +MNLVL D EE KKN
Sbjct: 9 MLQYINYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEERE 64
Query: 67 -RKPLGRILLKGDNITLMMNTGK 88
R+ LG +LL+G+ + M G
Sbjct: 65 DRRTLGLVLLRGEEVISMTVEGP 87
>gi|157870915|ref|XP_001684007.1| putative Lsm7p protein [Leishmania major strain Friedlin]
gi|68127075|emb|CAJ04433.1| putative Lsm7p protein [Leishmania major strain Friedlin]
Length = 91
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 31 LFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 85
+ QK + G + GFD +NLVL DAE H + RK +G +++G + L+++
Sbjct: 27 VVSQKGHEVHGVLKGFDNNVNLVLADAELWHRDTHVRK-IGACVVRGGPVNLILS 80
>gi|334311663|ref|XP_001374371.2| PREDICTED: hypothetical protein LOC100022567 [Monodelphis
domestica]
Length = 465
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 20/87 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + RI I F+ FD++MNL+L D +E IK KN +
Sbjct: 234 MLQHIDYRMRCILQDGRIFIGTFK-----------AFDKHMNLILCDCDEFRKIKPKNAK 282
Query: 68 KP-------LGRILLKGDNITLMMNTG 87
+P LG +LL+G+N+ M G
Sbjct: 283 QPEREEKRVLGLVLLRGENLVSMTVEG 309
>gi|403216098|emb|CCK70596.1| hypothetical protein KNAG_0E03380 [Kazachstania naganishii CBS
8797]
Length = 77
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 19 RFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR-ILLKG 77
R++ K +QI ++ G + GFD ++N+VLDDA E+ ++ PLG +++G
Sbjct: 9 RYMDKKVVLQI----NGSRKVAGTMRGFDLFLNVVLDDAVELLQEEGKTSPLGSPTVIRG 64
Query: 78 DNI 80
++I
Sbjct: 65 NSI 67
>gi|391336578|ref|XP_003742656.1| PREDICTED: uncharacterized protein LOC100908975 [Metaseiulus
occidentalis]
Length = 406
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEE 59
PI+++ + L +K R+++W+ +R + G + FD+++NL L D +E
Sbjct: 127 PISILHKALTNKLRVKVWVRSHSTVRSILTGFVAAFDKHLNLALVDVDE 175
>gi|290989375|ref|XP_002677313.1| predicted protein [Naegleria gruberi]
gi|284090920|gb|EFC44569.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 18/89 (20%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE-VH--------- 61
+P++LI L Q+++ + D + G + +D+++N+VL + EE +H
Sbjct: 8 EPLDLIRLSLDE----QVYIKLKGDRELRGTLHAYDQHLNMVLGNVEETIHEIDIDKETN 63
Query: 62 ---IKKNTRKPLGRILLKGDNITLMMNTG 87
+K TRK +G + L+GD + L++N+
Sbjct: 64 EQQMKSTTRK-IGMLFLRGDGVILVVNSA 91
>gi|66823569|ref|XP_645139.1| hypothetical protein DDB_G0272320 [Dictyostelium discoideum AX4]
gi|74857874|sp|Q55A45.1|RSMB_DICDI RecName: Full=Small nuclear ribonucleoprotein-associated protein
B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|60473366|gb|EAL71312.1| hypothetical protein DDB_G0272320 [Dictyostelium discoideum AX4]
Length = 274
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-------KKNTRKP 69
+ +++ + R+ I Q I GR + FD++MN+V+ DAEE + ++
Sbjct: 10 MLQYINYRMRVTI----QDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRT 65
Query: 70 LGRILLKGDNITLM 83
LG IL++G+ + M
Sbjct: 66 LGMILIRGETVVSM 79
>gi|346976539|gb|EGY19991.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 79
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 36 DLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87
D +GR++ D YMN+ L AEE +I + LG++L++ +N+ + G
Sbjct: 18 DTEYKGRLVSIDSYMNIQLSGAEE-YIDQKMTGALGQVLIRCNNVLWIRAAG 68
>gi|146089304|ref|XP_001470350.1| putative Lsm7p protein [Leishmania infantum JPCM5]
gi|134070383|emb|CAM68720.1| putative Lsm7p protein [Leishmania infantum JPCM5]
Length = 91
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 31 LFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 85
+ QK+ + G + GFD +NLVL DAE H + RK +G +++G + L+++
Sbjct: 27 VVSQKNHEMHGVLKGFDNNVNLVLADAELWHRNTHIRK-IGACVVRGGPVNLILS 80
>gi|412990385|emb|CCO19703.1| Small nuclear ribonucleoprotein Sm D2 [Bathycoccus prasinos]
Length = 97
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 24 KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP-----------LGR 72
K Q+ + + + ++ GR+ FD ++NL+L++ +EV +N++K + +
Sbjct: 22 KTNSQVLINCRNNRKLLGRVKAFDRHLNLLLENVKEVWTDRNSQKESKTPPSNKDRFISK 81
Query: 73 ILLKGDNITLMMNTGK 88
+ L+GD+I L++ K
Sbjct: 82 LFLRGDSIILVLKNPK 97
>gi|356534803|ref|XP_003535941.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 1 [Glycine max]
Length = 97
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 17/95 (17%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MAS + + + +P+NLI+ L RI + L ++LR G++ +D+++N+VL D EE+
Sbjct: 1 MASEE-ESAVKEPLNLIW--LSLDERIYVKLRSDRELR--GKLHAYDQHLNIVLGDVEEI 55
Query: 61 ------------HIKKNTRKPLGRILLKGDNITLM 83
+ + T++ + + ++GD + L+
Sbjct: 56 VTTVEIDDLLFSFLLQTTKRTVPFLFVRGDGVILV 90
>gi|297850550|ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
gi|297338998|gb|EFH69415.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L + RI + L ++LR G++ FD+++N++L D EEV
Sbjct: 11 EPLDLIR--LSIEERIYVKLRSDRELR--GKLHAFDQHLNMILGDVEEVITTVEIDDETY 66
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
I + T++ + + ++GD + L+
Sbjct: 67 EEIVRTTKRTVPFLFVRGDGVILV 90
>gi|124512338|ref|XP_001349302.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|23499071|emb|CAD51151.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 83
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
FR K R+QI+L + ++ G + G+D +MNLVLD+ E IKK+ + +G ++++G
Sbjct: 14 FRKFMEK-RLQIYL--NGNRQVVGILRGYDTFMNLVLDNTME--IKKDEQIDIGVVVIRG 68
Query: 78 DNIT 81
++I+
Sbjct: 69 NSIS 72
>gi|254564981|ref|XP_002489601.1| hypothetical protein [Komagataella pastoris GS115]
gi|238029397|emb|CAY67320.1| Hypothetical protein PAS_chr1-3_0256 [Komagataella pastoris
GS115]
gi|328350024|emb|CCA36424.1| Probable U6 snRNA-associated Sm-like protein LSm5 [Komagataella
pastoris CBS 7435]
Length = 79
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ L+ + + S+ RI + D EG ++GFDE++N++L D E + +
Sbjct: 12 PLELVDKAIGSQVRILLI----NDREFEGTLVGFDEFVNVILSDVTETGPEGTIHRD--E 65
Query: 73 ILLKGDNITLMMN 85
+LL G I + +
Sbjct: 66 MLLTGTTIAMFVT 78
>gi|90407655|ref|ZP_01215835.1| phnA protein [Psychromonas sp. CNPT3]
gi|90311246|gb|EAS39351.1| phnA protein [Psychromonas sp. CNPT3]
Length = 197
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 18 FRFLQSKARIQIWLFEQKDL-RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLK 76
FR L ++ +IW + D+ +E + +Y + DD EEV TR G ILL
Sbjct: 81 FRLLTRLSKTEIWAQDLLDMMYLEDETRAWADY-GVAADDIEEV---APTRDSNGSILLA 136
Query: 77 GDNITLM 83
GDN+TL+
Sbjct: 137 GDNVTLI 143
>gi|388852751|emb|CCF53669.1| probable SMX2-snRNP G protein [Ustilago hordei]
Length = 87
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 11/72 (15%)
Query: 19 RFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA-EEVHIKKNTRKP------LG 71
RFL + + I Q +I+G + GFD ++NLV+DDA E+VH + G
Sbjct: 11 RFLDKRIAVNI----QGGRKIQGTLRGFDMFLNLVVDDAIEQVHPEAGNPNVWQDGDRCG 66
Query: 72 RILLKGDNITLM 83
++++G+++T +
Sbjct: 67 TVVVRGNSVTSL 78
>gi|242018957|ref|XP_002429935.1| membrane-associated protein, putative [Pediculus humanus
corporis]
gi|212514981|gb|EEB17197.1| membrane-associated protein, putative [Pediculus humanus
corporis]
Length = 76
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 38 RIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
++ G + GFD +MNLV+D++ E+ K T +G ++++G+++ ++
Sbjct: 26 QVNGILRGFDPFMNLVIDESVEI-CKNGTHNNIGMVVIRGNSVVML 70
>gi|24649486|ref|NP_732931.1| LSm3, isoform A [Drosophila melanogaster]
gi|281362412|ref|NP_001163707.1| LSm3, isoform B [Drosophila melanogaster]
gi|23172108|gb|AAN13967.1| LSm3, isoform A [Drosophila melanogaster]
gi|189181823|gb|ACD81688.1| FI09213p [Drosophila melanogaster]
gi|272477132|gb|ACZ95002.1| LSm3, isoform B [Drosophila melanogaster]
Length = 103
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L K + + + +++LR GR+ FD+++N+VL DAEE
Sbjct: 17 EPLDLIRLSLDEK--VYVKMRNERELR--GRLHAFDQHLNMVLGDAEETVTTVEIDEETY 72
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ K ++ + + ++GD + L+
Sbjct: 73 EEVYKTAKRTIPMLFVRGDGVILV 96
>gi|157119614|ref|XP_001659450.1| Sm protein G, putative [Aedes aegypti]
gi|108875262|gb|EAT39487.1| AAEL008719-PA [Aedes aegypti]
Length = 76
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD +MN+VLD++ E K +TR +G ++++G++I ++
Sbjct: 27 VSGILRGFDPFMNVVLDESIE-ECKDSTRNNIGMVVIRGNSIIMV 70
>gi|224010870|ref|XP_002294392.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969887|gb|EED88226.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 131
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 25 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV--------HIKKNTRKPLGRILLK 76
+ +++ ++LR G + G+DE +NLVLDD EE I TRK LG ++++
Sbjct: 44 SSVRVKCLGGRELR--GALRGYDELVNLVLDDCEEFMRDPEDPETITNQTRK-LGLVVIR 100
Query: 77 GDNITLM 83
G ++L+
Sbjct: 101 GTQVSLV 107
>gi|224085111|ref|XP_002307496.1| predicted protein [Populus trichocarpa]
gi|359493111|ref|XP_002266320.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Vitis vinifera]
gi|222856945|gb|EEE94492.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 17/95 (17%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
MAS + + + +P++LI L RI + L ++LR G++ +D+++N++L D EE+
Sbjct: 1 MASEE-ESAVKEPLDLIR--LSLDERIYVKLRSDRELR--GKLHAYDQHLNMILGDVEEI 55
Query: 61 ------------HIKKNTRKPLGRILLKGDNITLM 83
I + TR+ + + ++GD + L+
Sbjct: 56 VTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILV 90
>gi|57640911|ref|YP_183389.1| small nuclear ribonucleoprotein [Thermococcus kodakarensis KOD1]
gi|73919284|sp|Q5JIE0.1|RUXX_PYRKO RecName: Full=Putative snRNP Sm-like protein
gi|57159235|dbj|BAD85165.1| snRNP component, Sm-like protein [Thermococcus kodakarensis KOD1]
Length = 76
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I + L + + ++ G++IG+D ++N+VL DAE + + +K G
Sbjct: 4 RPLDVIHKSLDK----DVLVLLKRGNEFRGKLIGYDIHLNVVLADAELIQDGEVVKK-YG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>gi|344297981|ref|XP_003420673.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Loxodonta africana]
Length = 270
Score = 35.8 bits (81), Expect = 3.8, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 20/87 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + RI I F+ FD++MNL+L D +E IK KN +
Sbjct: 39 MLQHIDYRMRCILQDGRIFIGTFK-----------AFDKHMNLILCDCDEFRKIKPKNAK 87
Query: 68 KP-------LGRILLKGDNITLMMNTG 87
+P LG +LL+G+N+ M G
Sbjct: 88 QPEREEKRVLGLVLLRGENLVSMTVEG 114
>gi|219129945|ref|XP_002185137.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403316|gb|EEC43269.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 18/87 (20%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-------- 61
M +P++LI L R+ + ++LR G++ G+D+++N++L D EE
Sbjct: 1 MEEPLDLIR--LSIDERVYVKCRGDRELR--GKLHGYDQHLNMILGDVEETVTSTEIDEE 56
Query: 62 -----IKKNTRKPLGRILLKGDNITLM 83
+KK TRK +G + ++GD + L+
Sbjct: 57 TDEQIVKKQTRK-VGMLFVRGDIVVLV 82
>gi|123977181|ref|XP_001330763.1| Sm protein [Trichomonas vaginalis G3]
gi|121912574|gb|EAY17394.1| Sm protein [Trichomonas vaginalis G3]
Length = 107
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 35 KDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--LGRILLKGDNIT 81
+ L +G ++ +DE+MNLVL EE+ R+P +G ++++G N++
Sbjct: 22 EGLSFQGILMNYDEHMNLVLRQVEEIPQDNQQREPKRIGLMVMRGCNVS 70
>gi|25012398|gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L K + + + +++LR GR+ FD+++N+VL DAEE
Sbjct: 17 EPLDLIRLSLDEK--VYVKMRNERELR--GRLHAFDQHLNMVLGDAEETVTTVEIDEETY 72
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
+ K ++ + + ++GD + L+
Sbjct: 73 EEVYKTAKRTIPMLFVRGDGVILV 96
>gi|15218164|ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|8920641|gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene [Arabidopsis thaliana]
gi|12248017|gb|AAG50100.1|AF334722_1 unknown protein [Arabidopsis thaliana]
gi|332191952|gb|AEE30073.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 97
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L + RI + L ++LR G++ FD+++N++L D EEV
Sbjct: 11 EPLDLIR--LSIEERIYVKLRSDRELR--GKLHAFDQHLNMILGDVEEVITTIEIDDETY 66
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
I + T++ + + ++GD + L+
Sbjct: 67 EEIVRTTKRTVPFLFVRGDGVILV 90
>gi|341581440|ref|YP_004761932.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
gi|340809098|gb|AEK72255.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
Length = 76
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I + L + + ++ GR+IG+D ++N+VL DA + + ++ G
Sbjct: 4 RPLDVIHKSLDK----DVLVLLKRGSEFRGRLIGYDIHLNVVLADAALIQEGEEVKR-YG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>gi|255583342|ref|XP_002532432.1| snrnp sm protein, putative [Ricinus communis]
gi|223527852|gb|EEF29947.1| snrnp sm protein, putative [Ricinus communis]
Length = 97
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 16/93 (17%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV-- 60
+T+ + + +P++LI L RI + L ++LR G++ +D+++N++L D EEV
Sbjct: 2 ATEEESAVKEPLDLIR--LSLDERIYVKLRSDRELR--GKLHAYDQHLNMILGDVEEVVT 57
Query: 61 ----------HIKKNTRKPLGRILLKGDNITLM 83
I + T++ + + ++GD + L+
Sbjct: 58 TVEIDDETYEEIVRTTKRTVPFLFVRGDGVILV 90
>gi|148235975|ref|NP_001080161.1| small nuclear ribonucleoparticle-associated protein (snRNP) mRNA,
clone Sm51 [Xenopus laevis]
gi|114107804|gb|AAI23124.1| Snrpn protein [Xenopus laevis]
Length = 236
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 20/87 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + RI I F+ FD++MNL+L D +E IK KN++
Sbjct: 9 MLQHIDFRMRCILQDGRIFIGTFK-----------AFDKHMNLILCDCDEFRKIKPKNSK 57
Query: 68 KP-------LGRILLKGDNITLMMNTG 87
+P LG +LL+G+N+ M G
Sbjct: 58 QPEREEKRVLGLVLLRGENLVSMTVEG 84
>gi|110743008|dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]
Length = 96
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L + RI + L ++LR G++ FD+++N++L D EEV
Sbjct: 10 EPLDLIR--LSIEERIYVKLRSDRELR--GKLHAFDQHLNMILGDVEEVITTIEIDDETY 65
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
I + T++ + + ++GD + L+
Sbjct: 66 EEIVRTTKRTVPFLFVRGDGVILV 89
>gi|27371057|gb|AAH41275.1| Snrpn-prov protein [Xenopus laevis]
Length = 236
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 20/87 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + RI I F+ FD++MNL+L D +E IK KN++
Sbjct: 9 MLQHIDFRMRCILQDGRIFIGTFK-----------AFDKHMNLILCDCDEFRKIKPKNSK 57
Query: 68 KP-------LGRILLKGDNITLMMNTG 87
+P LG +LL+G+N+ M G
Sbjct: 58 QPEREEKRVLGLVLLRGENLVSMTVEG 84
>gi|82793460|ref|XP_728048.1| small nuclear ribonucleoprotein polypeptide G [Plasmodium yoelii
yoelii 17XNL]
gi|23484203|gb|EAA19613.1| putative small nuclear ribonucleoprotein polypeptide G
[Plasmodium yoelii yoelii]
Length = 83
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
FR K R+QI+L + I G + G+D +MNLVLD+ V IKK+ +G ++++G
Sbjct: 14 FRKFMEK-RLQIYL--NGNRLIVGVLRGYDTFMNLVLDNT--VEIKKDENIEIGIVVIRG 68
Query: 78 DNIT 81
++I+
Sbjct: 69 NSIS 72
>gi|70944596|ref|XP_742213.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|56521062|emb|CAH84531.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi
chabaudi]
Length = 83
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
FR K R+QI+L + I G + G+D +MNLVLD+ V IKK+ +G ++++G
Sbjct: 14 FRKFMEK-RLQIYL--NGNRLIVGVLRGYDTFMNLVLDNT--VEIKKDENIEIGIVVIRG 68
Query: 78 DNIT 81
++I+
Sbjct: 69 NSIS 72
>gi|315426676|dbj|BAJ48302.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315428002|dbj|BAJ49591.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485412|dbj|BAJ51066.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 77
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
T+P+ + R + R+ F + D R EG ++ D YMN++L+ E ++ +
Sbjct: 5 TKPLTTLMRQINKPVRV----FLKNDARYEGTMVECDGYMNMLLEHVVE-YMGDSKTAGY 59
Query: 71 GRILLKGDNI 80
++L++G+NI
Sbjct: 60 PKVLIRGNNI 69
>gi|221053452|ref|XP_002258100.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193807933|emb|CAQ38637.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
Length = 83
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77
FR K R+Q++L + +I G + G+D +MNLVLD+ V IKK + +G ++++G
Sbjct: 14 FRKFMEK-RLQVYL--NGNRQIVGVLRGYDTFMNLVLDNT--VEIKKEQQIDIGIVVIRG 68
Query: 78 DNIT 81
++I+
Sbjct: 69 NSIS 72
>gi|68064661|ref|XP_674314.1| ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56492799|emb|CAH97912.1| ribonucleoprotein, putative [Plasmodium berghei]
Length = 194
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 20 FLQSKARIQIWLFEQKDLRIE-GRIIGFDEYMNLVLDDAEEVHIKKNT-------RKPLG 71
+LQ + R+ I D R G + +D +MN+VL DAEE KN ++ +G
Sbjct: 10 WLQYRVRVTI-----SDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKENNFKEIKRVVG 64
Query: 72 RILLKGDNI 80
IL++GDNI
Sbjct: 65 LILIRGDNI 73
>gi|348540539|ref|XP_003457745.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Oreochromis niloticus]
Length = 256
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 20/88 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + RI I F+ FD++MNL+L D +E IK KN++
Sbjct: 25 MLQHIDFRMRCILQDGRIFIGTFKA-----------FDKHMNLILCDCDEFRKIKPKNSK 73
Query: 68 KP-------LGRILLKGDNITLMMNTGK 88
+P LG +LL+G+N+ M G
Sbjct: 74 QPEREEKRVLGLVLLRGENLVSMTVEGP 101
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.141 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,231,198,089
Number of Sequences: 23463169
Number of extensions: 42936330
Number of successful extensions: 122785
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 766
Number of HSP's that attempted gapping in prelim test: 121697
Number of HSP's gapped (non-prelim): 1354
length of query: 88
length of database: 8,064,228,071
effective HSP length: 58
effective length of query: 30
effective length of database: 6,703,364,269
effective search space: 201100928070
effective search space used: 201100928070
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)