BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034651
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZUG0|RUXE_DANRE Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=3
SV=1
Length = 92
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 72/79 (91%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RI +WL+EQ ++RIEG IIGFDEYMNLVLDDAEEVH+K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 65 NTRKPLGRILLKGDNITLM 83
RKPLGRI+LKGDNITL+
Sbjct: 69 KNRKPLGRIMLKGDNITLL 87
>sp|A1XQR9|RUXE_PIG Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3
SV=1
Length = 92
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 74/85 (87%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
+ KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 63 KKNTRKPLGRILLKGDNITLMMNTG 87
K +RK LGRI+LKGDNITL+ +
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>sp|P62305|RUXE_MOUSE Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=2
SV=1
Length = 92
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>sp|P62304|RUXE_HUMAN Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1
SV=1
Length = 92
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>sp|P62303|RUXE_CHICK Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3
SV=1
Length = 92
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>sp|A4FUI2|RUXE_BOVIN Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3
SV=1
Length = 92
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 73/83 (87%)
Query: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK 64
KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE+H K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 65 NTRKPLGRILLKGDNITLMMNTG 87
+RK LGRI+LKGDNITL+ +
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>sp|Q9VLV5|RUXE_DROME Probable small nuclear ribonucleoprotein E OS=Drosophila
melanogaster GN=SmE PE=3 SV=1
Length = 94
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 72/86 (83%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
+ KVQ++M QPINLIFR+LQ+++R+Q+WL+E LRIEG I+GFDEYMNLVLDDAEEV+
Sbjct: 5 GNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVY 64
Query: 62 IKKNTRKPLGRILLKGDNITLMMNTG 87
+K R+ LGRI+LKGDNITL+ N
Sbjct: 65 VKTRQRRNLGRIMLKGDNITLIQNVS 90
>sp|A8XDT0|RUXE_CAEBR Probable small nuclear ribonucleoprotein E OS=Caenorhabditis
briggsae GN=snr-6 PE=3 SV=1
Length = 90
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 68/83 (81%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M+ K+Q++M QP+NLIFR+LQ++ R+QIWL+E R+EG IIGFDE+MN+V D+AEEV
Sbjct: 1 MSQRKIQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
++K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>sp|Q9XTU6|RUXE_CAEEL Probable small nuclear ribonucleoprotein E OS=Caenorhabditis
elegans GN=snr-6 PE=3 SV=1
Length = 90
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 68/83 (81%)
Query: 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
M++ K+ ++M QP+NLIFR+LQ++ R+QIWL+E R+EG IIGFDE+MN+V D+AEEV
Sbjct: 1 MSTRKLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEV 60
Query: 61 HIKKNTRKPLGRILLKGDNITLM 83
++K R +GRILLKGDNITL+
Sbjct: 61 NMKTKGRNKIGRILLKGDNITLI 83
>sp|Q9USZ3|RUXE_SCHPO Small nuclear ribonucleoprotein E OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sme1 PE=1 SV=1
Length = 84
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI 62
S +VQ++M PIN IF+ LQ + IWLFEQ D+R++G+I GFDE+MN+VLDDA +V
Sbjct: 2 SGRVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDA 61
Query: 63 KKNTRKPLGRILLKGDNITLM 83
K N R+ LGRILLKGDNITL+
Sbjct: 62 KNNKRE-LGRILLKGDNITLI 81
>sp|Q12330|RUXE_YEAST Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1
Length = 94
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 8/92 (8%)
Query: 3 STKVQ-RIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
S KV+ + M PIN IF FLQ + + IWLFEQ +RI+G+I+GFDE+MN+V+D+A E+
Sbjct: 2 SNKVKTKAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIP 61
Query: 62 IKKNTRK-------PLGRILLKGDNITLMMNT 86
+ K PLG+ILLKGDNITL+ +
Sbjct: 62 VNSADGKEDVEKGTPLGKILLKGDNITLITSA 93
>sp|Q5R628|LSM5_PONAB U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5
PE=3 SV=3
Length = 91
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A+T +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E
Sbjct: 5 ATTNPSQLL--PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLMMNTGK 88
I R+ L +ILL G+NIT+++ G+
Sbjct: 59 ITPEGRRITKLDQILLNGNNITMLVPGGE 87
>sp|P62322|LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5
PE=3 SV=2
Length = 91
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A+T +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E
Sbjct: 5 ATTNPSQLL--PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLMMNTGK 88
I R+ L +ILL G+NIT+++ G+
Sbjct: 59 ITPEGRRITKLDQILLNGNNITMLVPGGE 87
>sp|Q9Y4Y9|LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5
PE=1 SV=3
Length = 91
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A+T +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E
Sbjct: 5 ATTNPSQLL--PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLMMNTGK 88
I R+ L +ILL G+NIT+++ G+
Sbjct: 59 ITPEGRRITKLDQILLNGNNITMLVPGGE 87
>sp|Q2HJH0|LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5
PE=3 SV=3
Length = 91
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 8/89 (8%)
Query: 2 ASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
A+T +++ P+ L+ + + S RI I + + D I G ++GFD+++N+VL+D E
Sbjct: 5 ATTNPSQLL--PLELVDKCIGS--RIHIVM--KSDKEIVGTLLGFDDFVNMVLEDVTEFE 58
Query: 62 IKKNTRK--PLGRILLKGDNITLMMNTGK 88
I R+ L +ILL G+NIT+++ G+
Sbjct: 59 ITPEGRRITKLDQILLNGNNITMLVPGGE 87
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 1 MASTKVQRIMTQ-PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE 59
M QR+ Q P++ + L S I++ + D G + FD +MNLVL+DAEE
Sbjct: 1 MIDVSSQRVNVQRPLDALGNSLNSPVIIKL----KGDREFRGVLKSFDLHMNLVLNDAEE 56
Query: 60 VHIKKNTRKPLGRILLKGDNIT 81
+ + TR+ LG +L++GDNI
Sbjct: 57 LEDGEVTRR-LGTVLIRGDNIV 77
>sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=PH1518.2 PE=3 SV=1
Length = 75
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I R L + + +K GR+IG+D ++N+VL DAE V + +K G
Sbjct: 4 RPLDVIHRSLDK----DVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDGEVVKK-YG 58
Query: 72 RILLKGDNITLMMNT 86
+I+++GDN+ + T
Sbjct: 59 KIVIRGDNVLAISPT 73
>sp|O42978|LSM5_SCHPO U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm5 PE=1 SV=2
Length = 80
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGR 72
P+ LI + + S +W+ + + G ++GFD+Y+N+VL D E +
Sbjct: 7 PLELIDKCIGS----NLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62
Query: 73 ILLKGDNITLMMNTGK 88
+LL G+ + +++ GK
Sbjct: 63 MLLNGNGMCMLIPGGK 78
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-------KKN 65
P+ +I + + K I + Q + EG ++GFD+++N++L+DA E I +
Sbjct: 8 PLEVIDKTINQKVLIVL----QSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEK 63
Query: 66 TRKPLGRILLKGDNITLMMNTGK 88
+ GR+LL G+NI +++ GK
Sbjct: 64 VMQHHGRMLLSGNNIAILVPGGK 86
>sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-like protein OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB06500 PE=1 SV=1
Length = 75
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I R L + + +K GR+IG+D ++N+VL DAE + K G
Sbjct: 4 RPLDVIHRSLDK----DVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQ-DGEVVKRYG 58
Query: 72 RILLKGDNITLMMNT 86
+I+++GDN+ + T
Sbjct: 59 KIVIRGDNVLAISPT 73
>sp|Q54HH8|SMDL_DICDI Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium
discoideum GN=DDB_G0289453 PE=3 SV=1
Length = 257
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLR--IEGRIIGFDEYMNLVLDDAEEVH-------IK 63
P++L+ R L+SK++I++ + +R G II FD++MN++L D EE +
Sbjct: 166 PLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKSLPST 225
Query: 64 KNTRKPL--------GRILLKGDNITLMM 84
+N +P+ G++ +KGD + ++
Sbjct: 226 RNQNQPIQPKIKRYYGQLFIKGDTVVSVI 254
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNIT 81
G + G+D +MNLVLD+AEE+ + +RK LG I+++GD +
Sbjct: 29 GELQGYDMHMNLVLDNAEELKENEASRK-LGTIIVRGDTVV 68
>sp|Q55EX5|LSM5_DICDI Probable U6 snRNA-associated Sm-like protein LSm5
OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1
Length = 97
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKP--L 70
P+ LI + + S+ IW+ + D G ++GFD Y+N+ L D E K L
Sbjct: 18 PLELIEKCIGSR----IWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 71 GRILLKGDNITLMMNTGK 88
ILL G+++ L++ G+
Sbjct: 74 DNILLNGNHVCLLVPGGE 91
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 10 MTQPINL-IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRK 68
M+ PI L R + + + + LRI+G + +D+++N++L DAEE I + + +
Sbjct: 1 MSGPITLPTLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEE--IGETSIR 58
Query: 69 PLGRILLKGDNITLM 83
LG L++GD++ ++
Sbjct: 59 RLGLTLVRGDSVVVI 73
>sp|P34659|RUXF_CAEEL Probable small nuclear ribonucleoprotein F OS=Caenorhabditis
elegans GN=snr-5 PE=1 SV=1
Length = 85
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 4 TKVQRIMTQPI--NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61
+ VQ + +P +L +F+ K + W E K G ++ D YMNL L AEE +
Sbjct: 2 SAVQPVNPKPFLNSLTGKFVVCKLK---WGMEYK-----GVLVAVDSYMNLQLAHAEE-Y 52
Query: 62 IKKNTRKPLGRILLKGDNI 80
I N++ LG IL++ +N+
Sbjct: 53 IDGNSQGNLGEILIRCNNV 71
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
+ G + GFD +MN+VLDD E K NT+ +G ++++G++I ++
Sbjct: 27 VTGILRGFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMV 70
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
+P++++ R L+S + + L ++ R G + G+D +MNLVL DAEE+ + RK +
Sbjct: 3 PRPLDVLNRSLKSP--VIVRLKGGREFR--GTLDGYDIHMNLVLLDAEEIQNGEVVRK-V 57
Query: 71 GRILLKGDNITLM 83
G ++++GD + +
Sbjct: 58 GSVVIRGDTVVFV 70
>sp|C6A1T2|RUXX_THESM Putative snRNP Sm-like protein OS=Thermococcus sibiricus (strain
MM 739 / DSM 12597) GN=TSIB_0511 PE=3 SV=1
Length = 76
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I + L ++ + ++ G++IG+D ++N+VL DA+ + +K G
Sbjct: 4 RPLDVIHKSLDK----EVLVILKRGAEYRGKLIGYDIHLNVVLADAQLIE-NGEPKKSYG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>sp|B6YUU5|RUXX_THEON Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain
NA1) GN=TON_0644 PE=3 SV=1
Length = 78
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I R L + + +K G++IG+D ++N+VL AE + + +K G
Sbjct: 4 RPLDVIHRSLDK----DVLVILKKGFEFRGKLIGYDIHLNIVLAGAEMIQDGEVVKK-YG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
G + G+D +MNLVLD+AEE+ + RK +G ++++GDN+ +
Sbjct: 29 GVLQGYDVHMNLVLDEAEELKDGEIVRK-IGGVVIRGDNVVYV 70
>sp|Q8U0P4|RUXX_PYRFU Putative snRNP Sm-like protein OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1542 PE=3
SV=1
Length = 76
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I + L + + +K G++IG+D ++N+VL +AE + + +K G
Sbjct: 4 RPLDVIHKSLDK----DVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDGEVVKK-YG 58
Query: 72 RILLKGDNITLMMNT 86
+I+++GDN+ + T
Sbjct: 59 KIVIRGDNVLAISPT 73
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
G + G+D +MNLVLD+AEE+ + K G ++++GDN+ +
Sbjct: 29 GELKGYDIHMNLVLDNAEELREGEVVSK-FGSVVIRGDNVVYV 70
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 17 IFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI-------KKNTRKP 69
+ +++ + R+ I Q I GR + FD++MN+V+ DAEE + ++
Sbjct: 10 MLQYINYRMRVTI----QDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRT 65
Query: 70 LGRILLKGDNITLM 83
LG IL++G+ + M
Sbjct: 66 LGMILIRGETVVSM 79
>sp|Q5JIE0|RUXX_PYRKO Putative snRNP Sm-like protein OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3
SV=1
Length = 76
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I + L + + ++ G++IG+D ++N+VL DAE + + +K G
Sbjct: 4 RPLDVIHKSLDK----DVLVLLKRGNEFRGKLIGYDIHLNVVLADAELIQDGEVVKK-YG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVIRGDNV 67
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPL 70
T+P++++ L I + + + G + G+D YMN+VL +A E+ I +
Sbjct: 8 TKPMDVLKNALSRNVLIDV----KGNREYSGILEGYDVYMNVVLQNASEI-INGENKGVF 62
Query: 71 GRILLKGDNITLM 83
RIL++GDN+ +
Sbjct: 63 DRILVRGDNVIFV 75
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
+ G + GFD++MNLV+D+ EV+ N + +G ++++G++I
Sbjct: 28 VTGTLRGFDQFMNLVVDNTVEVN--GNDKTDIGMVVIRGNSI 67
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 20/87 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + R+ I F+ FD++MNL+L D +E IK KN++
Sbjct: 9 MLQHIDYRMRCILQDGRVFIGTFKA-----------FDKHMNLILCDCDEFRKIKPKNSK 57
Query: 68 KP-------LGRILLKGDNITLMMNTG 87
+P LG +LL+G+N+ M G
Sbjct: 58 QPEREEKRVLGLVLLRGENLVSMTVEG 84
>sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus
norvegicus GN=Snrpn PE=2 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 20/88 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + RI I F+ FD++MNL+L D +E IK KN +
Sbjct: 9 MLQHIDYRMRCILQDGRIFIGTFKA-----------FDKHMNLILCDCDEFRKIKPKNAK 57
Query: 68 KP-------LGRILLKGDNITLMMNTGK 88
+P LG +LL+G+N+ M G
Sbjct: 58 QPEREEKRVLGLVLLRGENLVSMTVEGP 85
>sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo
abelii GN=SNRPN PE=2 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 20/88 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + RI I F+ FD++MNL+L D +E IK KN +
Sbjct: 9 MLQHIDYRMRCILQDGRIFIGTFKA-----------FDKHMNLILCDCDEFRKIKPKNAK 57
Query: 68 KP-------LGRILLKGDNITLMMNTGK 88
+P LG +LL+G+N+ M G
Sbjct: 58 QPEREEKRVLGLVLLRGENLVSMTVEGP 85
>sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus
musculus GN=Snrpn PE=2 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 20/88 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + RI I F+ FD++MNL+L D +E IK KN +
Sbjct: 9 MLQHIDYRMRCILQDGRIFIGTFKA-----------FDKHMNLILCDCDEFRKIKPKNAK 57
Query: 68 KP-------LGRILLKGDNITLMMNTGK 88
+P LG +LL+G+N+ M G
Sbjct: 58 QPEREEKRVLGLVLLRGENLVSMTVEGP 85
>sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca
fascicularis GN=SNRPN PE=2 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 20/88 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + RI I F+ FD++MNL+L D +E IK KN +
Sbjct: 9 MLQHIDYRMRCILQDGRIFIGTFKA-----------FDKHMNLILCDCDEFRKIKPKNAK 57
Query: 68 KP-------LGRILLKGDNITLMMNTGK 88
+P LG +LL+G+N+ M G
Sbjct: 58 QPEREEKRVLGLVLLRGENLVSMTVEGP 85
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo
sapiens GN=SNRPN PE=1 SV=1
Length = 240
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 20/88 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + RI I F+ FD++MNL+L D +E IK KN +
Sbjct: 9 MLQHIDYRMRCILQDGRIFIGTFKA-----------FDKHMNLILCDCDEFRKIKPKNAK 57
Query: 68 KP-------LGRILLKGDNITLMMNTGK 88
+P LG +LL+G+N+ M G
Sbjct: 58 QPEREEKRVLGLVLLRGENLVSMTVEGP 85
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 39 IEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80
I G + GFD++MNLV+D+ EV+ N + +G ++++G+++
Sbjct: 28 IVGTLRGFDQFMNLVVDNTVEVN--GNEKNDIGMVVIRGNSV 67
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 9/44 (20%)
Query: 46 FDEYMNLVLDDAEEVHI--KKNTRKP-------LGRILLKGDNI 80
FD++MNL+L D EE KN++ P LG +LL+G+NI
Sbjct: 34 FDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGENI 77
>sp|Q17QN3|RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N OS=Bos
taurus GN=SNRPN PE=2 SV=1
Length = 240
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 20/88 (22%)
Query: 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH-IK-KNTR 67
M Q I+ R + RI I F+ FD++MNL+L D +E IK KN +
Sbjct: 9 MLQHIDYRMRCILQDGRIFIGTFKA-----------FDKHMNLILCDCDEFRKIKPKNAK 57
Query: 68 KP-------LGRILLKGDNITLMMNTGK 88
+P LG +LL+G+N+ M G
Sbjct: 58 QPEREEKRVLGLVLLRGENLVSMTVEGP 85
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L RI + + ++LR GR+ +D+++N++L D EE
Sbjct: 16 EPLDLIR--LSLDERIYVKMRNDRELR--GRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
I K+T++ + + ++GD + L+
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLV 95
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L RI + + ++LR GR+ +D+++N++L D EE
Sbjct: 16 EPLDLIR--LSLDERIYVKMRNDRELR--GRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
I K+T++ + + ++GD + L+
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLV 95
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3
PE=3 SV=3
Length = 102
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 16/84 (19%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV----------- 60
+P++LI L RI + + ++LR GR+ +D+++N++L D EE
Sbjct: 16 EPLDLIR--LSLDERIYVKMRNDRELR--GRLHAYDQHLNMILGDVEETVTTIEIDEETY 71
Query: 61 -HIKKNTRKPLGRILLKGDNITLM 83
I K+T++ + + ++GD + L+
Sbjct: 72 EEIYKSTKRNIPMLFVRGDGVVLV 95
>sp|C5A1H1|RUXX_THEGJ Putative snRNP Sm-like protein OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1738 PE=3
SV=1
Length = 76
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLG 71
+P+++I R L + + ++ G++IG+D ++N+VL A+ + K G
Sbjct: 4 RPLDVIHRSLDK----DVLVLLKRGGEFRGKLIGYDIHLNVVLAGADYIQ-DGEVVKSYG 58
Query: 72 RILLKGDNI 80
+I+++GDN+
Sbjct: 59 KIVVRGDNV 67
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 41 GRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83
G + G+D +MNLVLD+AEE+ + K ++++GDN+ +
Sbjct: 29 GELKGYDIHMNLVLDNAEELRDGEVVSK-FSSVVIRGDNVVYV 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,573,554
Number of Sequences: 539616
Number of extensions: 1052650
Number of successful extensions: 3556
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 3483
Number of HSP's gapped (non-prelim): 89
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)