Query 034651
Match_columns 88
No_of_seqs 119 out of 1009
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 07:57:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6n_E Small nuclear ribonucle 100.0 2.8E-30 9.4E-35 161.9 8.3 84 4-87 8-91 (92)
2 1i8f_A Putative snRNP SM-like 99.9 1.6E-26 5.5E-31 141.2 8.7 80 1-87 1-80 (81)
3 4emk_A U6 snRNA-associated SM- 99.9 6.8E-26 2.3E-30 142.4 10.1 79 6-88 14-92 (94)
4 1mgq_A SM-like protein; LSM, R 99.9 8.6E-26 2.9E-30 138.6 8.3 78 1-85 6-83 (83)
5 1ljo_A Archaeal SM-like protei 99.9 3.3E-25 1.1E-29 134.0 8.5 74 9-87 2-76 (77)
6 3s6n_F Small nuclear ribonucle 99.9 5.7E-25 2E-29 136.0 9.2 72 11-87 5-76 (86)
7 1i4k_A Putative snRNP SM-like 99.9 1.4E-24 4.7E-29 131.1 8.4 71 12-87 4-74 (77)
8 1n9r_A SMF, small nuclear ribo 99.9 1.1E-24 3.8E-29 136.5 8.0 79 5-87 14-92 (93)
9 1h64_1 SnRNP SM-like protein; 99.9 2.9E-24 9.8E-29 129.2 8.5 71 12-87 4-74 (75)
10 1th7_A SnRNP-2, small nuclear 99.9 3.5E-24 1.2E-28 130.7 8.8 72 11-87 8-79 (81)
11 1d3b_A Protein (small nuclear 99.9 3.9E-24 1.3E-28 129.1 8.7 72 11-87 4-75 (75)
12 4emk_B U6 snRNA-associated SM- 99.9 1.2E-24 4.2E-29 131.1 6.4 72 11-87 3-74 (75)
13 3bw1_A SMX4 protein, U6 snRNA- 99.9 4.3E-24 1.5E-28 134.3 8.2 75 9-87 7-87 (96)
14 2fwk_A U6 snRNA-associated SM- 99.9 1.7E-24 6E-29 141.0 6.5 77 7-87 23-113 (121)
15 4emg_A Probable U6 snRNA-assoc 99.9 1.6E-23 5.6E-28 131.1 8.6 73 10-86 7-91 (93)
16 4emh_A Probable U6 snRNA-assoc 99.9 1.1E-23 3.9E-28 134.6 7.2 73 11-87 15-87 (105)
17 1b34_B Protein (small nuclear 99.9 1.7E-23 5.9E-28 135.8 7.4 80 7-88 22-114 (118)
18 3s6n_G Small nuclear ribonucle 99.9 3E-23 1E-27 125.4 7.1 71 13-88 5-75 (76)
19 4emk_C U6 snRNA-associated SM- 99.9 7E-23 2.4E-27 132.3 8.6 79 5-87 16-100 (113)
20 1b34_A Protein (small nuclear 99.9 9.8E-23 3.4E-27 132.5 7.7 71 12-87 2-72 (119)
21 1d3b_B Protein (small nuclear 99.9 2.8E-22 9.4E-27 124.4 5.7 72 12-87 4-84 (91)
22 2y9a_D Small nuclear ribonucle 99.9 7.6E-22 2.6E-26 129.6 7.9 72 11-87 4-75 (126)
23 3pgw_B SM B; protein-RNA compl 99.8 4.7E-20 1.6E-24 131.1 9.7 72 12-87 4-84 (231)
24 1m5q_A SMAP3, small nuclear ri 99.8 2.6E-19 8.8E-24 118.1 6.5 64 15-87 3-66 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.3 3E-06 1E-10 52.0 6.7 64 11-86 7-71 (86)
26 2qtx_A Uncharacterized protein 97.7 1.8E-05 6.3E-10 46.9 2.3 39 16-56 17-55 (71)
27 1u1s_A HFQ protein; SM-like ba 97.5 0.00012 4E-09 44.5 4.1 38 15-54 10-47 (82)
28 3ahu_A Protein HFQ; SM-like mo 97.4 0.00011 3.9E-09 44.2 3.5 37 16-54 15-51 (78)
29 3sb2_A Protein HFQ; SM-like, R 97.4 0.00023 7.8E-09 43.0 4.1 37 15-53 11-47 (79)
30 1kq1_A HFQ, HOST factor for Q 97.3 0.00022 7.5E-09 42.8 3.7 40 15-56 10-49 (77)
31 2ylb_A Protein HFQ; RNA-bindin 97.3 0.00022 7.4E-09 42.5 3.5 37 15-53 12-48 (74)
32 2y90_A Protein HFQ; RNA-bindin 97.3 0.00029 1E-08 44.5 4.1 39 15-55 12-50 (104)
33 3hfo_A SSR3341 protein; HFQ, S 95.8 0.011 3.7E-07 34.8 3.7 42 11-54 7-49 (70)
34 3hfn_A ASL2047 protein; HFQ, S 95.4 0.027 9.4E-07 33.2 4.4 61 11-85 9-70 (72)
35 1ycy_A Conserved hypothetical 94.6 0.22 7.7E-06 28.8 6.7 61 15-85 9-69 (71)
36 2vxe_A CG10686-PA; EDC3, CAR-1 94.2 0.42 1.4E-05 29.1 7.7 63 20-86 11-82 (88)
37 2fb7_A SM-like protein, LSM-14 93.5 0.26 9E-06 30.4 5.9 67 16-86 13-88 (95)
38 2vc8_A Enhancer of mRNA-decapp 86.4 2.4 8.2E-05 25.5 5.5 59 19-85 6-66 (84)
39 1ib8_A Conserved protein SP14. 77.4 2.5 8.5E-05 27.8 3.6 36 16-54 98-135 (164)
40 4a53_A EDC3; RNA binding prote 76.7 3.4 0.00012 26.5 3.9 37 18-59 8-46 (125)
41 1y96_B Gemin7, SIP3, GEM-assoc 73.4 12 0.00042 22.4 6.3 62 14-85 21-83 (85)
42 3rux_A BIRA bifunctional prote 64.7 10 0.00035 26.6 4.6 30 26-57 226-255 (270)
43 2xk0_A Polycomb protein PCL; t 60.4 22 0.00075 20.5 5.6 39 21-63 18-57 (69)
44 1bia_A BIRA bifunctional prote 60.1 40 0.0014 23.8 7.1 44 26-77 275-318 (321)
45 2eay_A Biotin [acetyl-COA-carb 55.6 11 0.00038 25.7 3.4 43 26-77 190-232 (233)
46 4hcz_A PHD finger protein 1; p 42.2 36 0.0012 18.9 3.5 33 27-61 10-45 (58)
47 2ej9_A Putative biotin ligase; 41.4 56 0.0019 22.1 5.2 28 26-56 194-221 (237)
48 1x4r_A PARP14 protein; WWE dom 37.2 1.9 6.4E-05 26.7 -2.7 18 41-58 35-52 (99)
49 2rm4_A CG6311-PB, DM EDC3; enh 36.4 74 0.0025 19.5 7.1 60 19-86 9-70 (103)
50 2e12_A SM-like motif, hypothet 35.4 71 0.0024 19.4 4.3 31 12-44 16-46 (101)
51 3rkx_A Biotin-[acetyl-COA-carb 34.3 55 0.0019 23.3 4.3 28 26-56 281-308 (323)
52 2qqr_A JMJC domain-containing 33.7 49 0.0017 20.7 3.5 24 21-48 8-31 (118)
53 2qs8_A XAA-Pro dipeptidase; am 32.0 53 0.0018 23.0 3.9 41 45-85 2-42 (418)
54 2eqj_A Metal-response element- 30.5 69 0.0024 18.1 3.5 21 29-49 20-40 (66)
55 2dxu_A Biotin--[acetyl-COA-car 30.2 40 0.0014 22.9 2.9 27 26-56 191-217 (235)
56 3mkv_A Putative amidohydrolase 25.8 77 0.0026 20.6 3.6 35 51-85 5-39 (426)
57 4b4t_U RPN8, 26S proteasome re 23.1 1.3E+02 0.0044 21.6 4.7 52 1-61 1-55 (338)
58 3feq_A Putative amidohydrolase 22.7 1.5E+02 0.005 20.5 4.8 35 51-85 5-39 (423)
59 3bfm_A Biotin protein ligase-l 22.5 1.8E+02 0.0061 19.4 5.3 18 39-56 202-219 (235)
60 2c5m_A CTP synthase; cytidine 21.8 25 0.00085 25.5 0.6 40 42-81 57-111 (294)
61 1v6z_A Hypothetical protein TT 20.9 1.3E+02 0.0046 20.2 4.2 25 29-56 35-59 (228)
62 2m0o_A PHD finger protein 1; t 20.4 47 0.0016 19.5 1.5 33 29-61 33-68 (79)
63 1vhy_A Hypothetical protein HI 20.1 2.1E+02 0.0071 19.6 5.1 21 29-49 42-62 (257)
No 1
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.96 E-value=2.8e-30 Score=161.92 Aligned_cols=84 Identities=69% Similarity=1.160 Sum_probs=73.0
Q ss_pred cccceeeecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEE
Q 034651 4 TKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLM 83 (88)
Q Consensus 4 ~~~~~~~~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I 83 (88)
++.||.|..|+++|+++++++++|.+|++..+|++|+|+|.|||+|||++|+||+|++.++++.+.+|.++|||+||++|
T Consensus 8 ~~~~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i 87 (92)
T 3s6n_E 8 QKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 87 (92)
T ss_dssp ------CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEE
T ss_pred CccceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEE
Confidence 35689999999999999999999999998888999999999999999999999999965666789999999999999999
Q ss_pred EecC
Q 034651 84 MNTG 87 (88)
Q Consensus 84 ~~~~ 87 (88)
++.+
T Consensus 88 ~~~~ 91 (92)
T 3s6n_E 88 QSVS 91 (92)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 9976
No 2
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.94 E-value=1.6e-26 Score=141.18 Aligned_cols=80 Identities=23% Similarity=0.379 Sum_probs=66.3
Q ss_pred CCccccceeeecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcE
Q 034651 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80 (88)
Q Consensus 1 ~~~~~~~~~~~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I 80 (88)
||+. .||.+..|+.+|.++++++ |.|+|++ |++|+|+|.|||+|||++|+||+|+ ++...+.+|.++|||+||
T Consensus 1 m~~~-~~~~~~~P~~~L~~~~~~~--V~V~l~~--g~~~~G~L~~~D~~mNlvL~d~~e~--~~~~~~~lg~v~iRG~~I 73 (81)
T 1i8f_A 1 MASD-ISKCFATLGATLQDSIGKQ--VLVKLRD--SHEIRGILRSFDQHVNLLLEDAEEI--IDGNVYKRGTMVVRGENV 73 (81)
T ss_dssp ----------CCHHHHHHTTTTSE--EEEEEGG--GEEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEECGGGE
T ss_pred CCcc-cCccccchHHHHHHHCCCe--EEEEEcC--CcEEEEEEEEEcCCCeeEEccEEEE--cCCcccCCCEEEECCCEE
Confidence 7875 6888999999999999985 9999986 5999999999999999999999998 567889999999999999
Q ss_pred EEEEecC
Q 034651 81 TLMMNTG 87 (88)
Q Consensus 81 ~~I~~~~ 87 (88)
++|.+++
T Consensus 74 ~~i~~~d 80 (81)
T 1i8f_A 74 LFISPVP 80 (81)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999986
No 3
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.93 E-value=6.8e-26 Score=142.45 Aligned_cols=79 Identities=24% Similarity=0.515 Sum_probs=65.7
Q ss_pred cceeeecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEe
Q 034651 6 VQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 85 (88)
Q Consensus 6 ~~~~~~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~ 85 (88)
.++.+..|+++|.++++++ |.|++++ |++|+|+|.|||+|||++|+||+|++.++++.+.+|.++|||+||++|.+
T Consensus 14 ~~~~~~~Pl~lL~~~l~k~--V~V~Lk~--gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p 89 (94)
T 4emk_A 14 PMSMTILPLELIDKCIGSN--LWVIMKS--EREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIP 89 (94)
T ss_dssp ------CHHHHHHHTTTSE--EEEEESS--SEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEE
T ss_pred CccccccCHHHHHHHcCCe--EEEEECC--CcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEe
Confidence 3677899999999999996 7777764 69999999999999999999999996466778999999999999999998
Q ss_pred cCC
Q 034651 86 TGK 88 (88)
Q Consensus 86 ~~~ 88 (88)
.++
T Consensus 90 ~~~ 92 (94)
T 4emk_A 90 GGK 92 (94)
T ss_dssp CC-
T ss_pred CCC
Confidence 753
No 4
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.93 E-value=8.6e-26 Score=138.60 Aligned_cols=78 Identities=33% Similarity=0.506 Sum_probs=67.0
Q ss_pred CCccccceeeecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcE
Q 034651 1 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNI 80 (88)
Q Consensus 1 ~~~~~~~~~~~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I 80 (88)
||.+ ++....|+.+|.++++++ |.|+|++ |++|+|+|.|||+|||++|+||+|++ .+...+.+|.++|||+||
T Consensus 6 ms~~--~~~~~~P~~~L~~~~~~~--V~V~Lk~--g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~IRG~~I 78 (83)
T 1mgq_A 6 VSSQ--RVNVQRPLDALGNSLNSP--VIIKLKG--DREFRGVLKSFDLHMNLVLNDAEELE-DGEVTRRLGTVLIRGDNI 78 (83)
T ss_dssp ------CCCTTCTTHHHHHTTTSE--EEEEETT--TEEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEEEEEEECGGGE
T ss_pred cccc--cccCcChHHHHHHhCCCE--EEEEEcC--CcEEEEEEEEECCCceeEEccEEEEe-cCCcccCCCEEEECCCEE
Confidence 7754 555789999999999985 8999875 69999999999999999999999995 556889999999999999
Q ss_pred EEEEe
Q 034651 81 TLMMN 85 (88)
Q Consensus 81 ~~I~~ 85 (88)
++|+|
T Consensus 79 ~~i~p 83 (83)
T 1mgq_A 79 VYISP 83 (83)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99975
No 5
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.92 E-value=3.3e-25 Score=134.03 Aligned_cols=74 Identities=27% Similarity=0.511 Sum_probs=66.6
Q ss_pred eeecchHHHHHhhcCcceEEEEEEeCCC-eEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEecC
Q 034651 9 IMTQPINLIFRFLQSKARIQIWLFEQKD-LRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87 (88)
Q Consensus 9 ~~~~Pl~~L~~~l~k~~~V~V~lk~~~g-~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~~ 87 (88)
.|..|+++|.++++++ |.|+++ +| ++|+|+|.|||+|||++|+||+|++ +++..+.+|.++|||+||++|.+++
T Consensus 2 ~m~~P~~~L~~~~~~~--v~V~lk--~g~~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~nI~~i~~~d 76 (77)
T 1ljo_A 2 AMVLPNQMVKSMVGKI--IRVEMK--GEENQLVGKLEGVDDYMNLYLTNAMECK-GEEKVRSLGEIVLRGNNVVLIQPQE 76 (77)
T ss_dssp CCCCHHHHHHHTTTSE--EEEEET--TCSSEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEEEEEEECGGGEEEEEEC-
T ss_pred CccchHHHHHHHCCCE--EEEEEe--CCCEEEEEEEEEECCcceEEEeeEEEEe-cCCcEeECCeEEEeCCeEEEEEeCC
Confidence 3789999999999996 888886 46 8999999999999999999999995 5668899999999999999999986
No 6
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.92 E-value=5.7e-25 Score=135.96 Aligned_cols=72 Identities=21% Similarity=0.371 Sum_probs=65.6
Q ss_pred ecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEecC
Q 034651 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87 (88)
Q Consensus 11 ~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~~ 87 (88)
..|+.+|.++++++ |+|+|++ |++|+|+|.|||+|||++|+||+|+ .++...+.+|.++|||+||++|.+++
T Consensus 5 ~~P~~~L~~~~~k~--V~V~Lk~--g~~~~G~L~~~D~~mNlvL~d~~e~-~~g~~~~~lg~v~IRG~nI~~i~~~d 76 (86)
T 3s6n_F 5 LNPKPFLNGLTGKP--VMVKLKW--GMEYKGYLVSVDGYMNMQLANTEEY-IDGALSGHLGEVLIRCNNVLYIRGVE 76 (86)
T ss_dssp CCHHHHHHHHTTSE--EEEEETT--SCEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEESSEEECGGGEEEEEECC
T ss_pred cCcHHHHHHhCCCe--EEEEEcC--CeEEEEEEEEEcCceEEEEeeEEEE-cCCceeeEccEEEEeCCeEEEEEeCC
Confidence 57999999999996 8999875 5999999999999999999999998 45667889999999999999999986
No 7
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.91 E-value=1.4e-24 Score=131.12 Aligned_cols=71 Identities=28% Similarity=0.528 Sum_probs=65.3
Q ss_pred cchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEecC
Q 034651 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87 (88)
Q Consensus 12 ~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~~ 87 (88)
.|+.+|.++++++ |.|+|++ |++|+|+|.|||+|||++|+||+|++ .+...+.+|.++|||+||++|.+++
T Consensus 4 ~P~~~L~~~~~~~--V~V~L~~--g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~~I~~i~~~d 74 (77)
T 1i4k_A 4 RPLDVLNRSLKSP--VIVRLKG--GREFRGTLDGYDIHMNLVLLDAEEIQ-NGEVVRKVGSVVIRGDTVVFVSPAP 74 (77)
T ss_dssp CHHHHHHTTTTSE--EEEEETT--SCEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEEEEEEECGGGEEEEEECC
T ss_pred cHHHHHHHhCCCE--EEEEEcC--CCEEEEEEEEEcCCCCeEEeeEEEEe-cCCcEeECCEEEECCCEEEEEEeCC
Confidence 7999999999986 8999875 69999999999999999999999995 5567899999999999999999986
No 8
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.91 E-value=1.1e-24 Score=136.55 Aligned_cols=79 Identities=19% Similarity=0.317 Sum_probs=61.2
Q ss_pred ccceeeecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEE
Q 034651 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMM 84 (88)
Q Consensus 5 ~~~~~~~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~ 84 (88)
.+......|+.+|.++++++ |+|+|+++ .++|+|+|.|||+|||++|+||+|++ ++++.+.+|.++|||+||++|.
T Consensus 14 ~~~~~~~~P~~~L~~~i~k~--V~V~Lk~g-~~~~~G~L~~~D~~MNlvL~d~~E~~-~~~~~~~lg~v~IRG~nI~~I~ 89 (93)
T 1n9r_A 14 ISAMQPVNPKPFLKGLVNHR--VGVKLKFN-STEYRGTLVSTDNYFNLQLNEAEEFV-AGVSHGTLGEIFIRCNNVLYIR 89 (93)
T ss_dssp ------------CGGGTTSE--EEEEESST-TEEEEEEEEECCTTTCEEEEEEEEEE-TTEEEEECCSEEECGGGEEEEE
T ss_pred ccccccCChHHHHHHhCCCE--EEEEEcCC-CEEEEEEEEEEccccEEEEeeEEEEc-CCCeEeEcCEEEEcCCeEEEEE
Confidence 34555679999999999996 99999763 39999999999999999999999994 6678899999999999999999
Q ss_pred ecC
Q 034651 85 NTG 87 (88)
Q Consensus 85 ~~~ 87 (88)
+++
T Consensus 90 ~~~ 92 (93)
T 1n9r_A 90 ELP 92 (93)
T ss_dssp ECC
T ss_pred eCC
Confidence 876
No 9
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.91 E-value=2.9e-24 Score=129.22 Aligned_cols=71 Identities=32% Similarity=0.623 Sum_probs=64.5
Q ss_pred cchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEecC
Q 034651 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87 (88)
Q Consensus 12 ~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~~ 87 (88)
.|+.+|.++++++ |.|++++ |++|+|+|.|||+|||++|+||+|++ .+...+.+|.++|||+||++|.+++
T Consensus 4 ~P~~~L~~~~~~~--V~V~l~~--g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 1h64_1 4 RPLDVIHRSLDKD--VLVILKK--GFEFRGRLIGYDIHLNVVLADAEMIQ-DGEVVKRYGKIVIRGDNVLAISPTE 74 (75)
T ss_dssp CHHHHHHTTTTSE--EEEEETT--SEEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEEEEEEECGGGEEEEEEC-
T ss_pred hHHHHHHHHCCCE--EEEEECC--CCEEEEEEEEEeCCCCeEEeeEEEEe-eCCceeECCEEEECCCEEEEEEeCC
Confidence 7999999999996 8888875 69999999999999999999999995 5567899999999999999999976
No 10
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.91 E-value=3.5e-24 Score=130.67 Aligned_cols=72 Identities=28% Similarity=0.486 Sum_probs=65.0
Q ss_pred ecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEecC
Q 034651 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87 (88)
Q Consensus 11 ~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~~ 87 (88)
..|+.+|.++++++ |.|+|++ |++|+|+|.|||+|||++|+||+|++ .+...+.+|.++|||+||++|.+++
T Consensus 8 ~~P~~~L~~~~~~~--V~V~l~~--g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~~I~~i~~~~ 79 (81)
T 1th7_A 8 ETAHKVLAESLNNL--VLVKLKG--NKEVRGMLRSYDQHMNLVLSDSEEIQ-SDGSGKKLGTIVIRGDNVILISPLQ 79 (81)
T ss_dssp HHHHHHHHHHTTSE--EEEEETT--TEEEEEEEEEECTTCCEEEEEEEEEC-SSSCEEEEEEEEECGGGEEEEEEC-
T ss_pred cchHHHHHHhCCCe--EEEEEcC--CcEEEEEEEEEcCCCCEEEccEEEEe-cCCceeECCEEEECCCEEEEEEecC
Confidence 58999999999986 8888875 69999999999999999999999995 5567899999999999999999876
No 11
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.91 E-value=3.9e-24 Score=129.12 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=65.3
Q ss_pred ecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEecC
Q 034651 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87 (88)
Q Consensus 11 ~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~~ 87 (88)
..|+++|+++++++ |+|+||+ |++|+|+|.|||+|||++|+||+|+. ++++.+.++.++|||+||.+|..++
T Consensus 4 ~~P~~~L~~~~g~~--V~VeLk~--g~~~~G~L~~~D~~MNl~L~~~~e~~-~~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 4 GVPIKVLHEAEGHI--VTCETNT--GEVYRGKLIEAEDNMNCQMSNITVTY-RDGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CCHHHHHHHTTTSE--EEEEETT--SCEEEEEEEEECTTCCEEEEEEEEEC-TTSCEEEEEEEEECGGGEEEEEECC
T ss_pred cCHHHHHHHhCCCE--EEEEECC--CcEEEEEEEEEccceeEEEEeEEEEC-CCCcEEEcCeEEEeCCEEEEEEcCC
Confidence 47999999999996 9999975 58999999999999999999999994 4557899999999999999999875
No 12
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.91 E-value=1.2e-24 Score=131.12 Aligned_cols=72 Identities=22% Similarity=0.442 Sum_probs=64.7
Q ss_pred ecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEecC
Q 034651 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87 (88)
Q Consensus 11 ~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~~ 87 (88)
..|+++|+++++++ |.|+|++ |++|+|+|.|||+|||++|+||+|+ .+++..+.+|.++|||+||++|++.+
T Consensus 3 ~~P~~~L~~~~~k~--V~V~Lk~--g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 3 SSPNEFLNKVIGKK--VLIRLSS--GVDYKGILSCLDGYMNLALERTEEY-VNGKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp SHHHHHHHHTTTSE--EEEECTT--SCEEEEEEEEECTTCEEEEEEEEEE-ETTEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred CchHHHHHHhCCCe--EEEEEcC--CcEEEEEEEEEcCcceEEEccEEEE-ecCCcccEecEEEEcCCeEEEEEecC
Confidence 36999999999996 8888875 6999999999999999999999998 46667899999999999999999976
No 13
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.3e-24 Score=134.32 Aligned_cols=75 Identities=25% Similarity=0.419 Sum_probs=66.8
Q ss_pred eeecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEec------CCeeeecCeEEEeCCcEEE
Q 034651 9 IMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK------KNTRKPLGRILLKGDNITL 82 (88)
Q Consensus 9 ~~~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~------~~~~~~~g~v~iRG~~I~~ 82 (88)
-|..|+.+|.++++++ |.|.|++ |++|+|+|.|||+|||++|+||+|++.. +...+.+|.++|||+||++
T Consensus 7 ~~~~p~~~L~~~i~k~--V~V~Lk~--gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~ 82 (96)
T 3bw1_A 7 HMETPLDLLKLNLDER--VYIKLRG--ARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTL 82 (96)
T ss_dssp CCCCHHHHHGGGTTSE--EEEEEGG--GCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEE
T ss_pred hhhhHHHHHHHHCCCe--EEEEECC--CcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEE
Confidence 4789999999999996 8888865 5999999999999999999999999754 2457889999999999999
Q ss_pred EEecC
Q 034651 83 MMNTG 87 (88)
Q Consensus 83 I~~~~ 87 (88)
|.+++
T Consensus 83 I~~~d 87 (96)
T 3bw1_A 83 ISTPS 87 (96)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99875
No 14
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.90 E-value=1.7e-24 Score=141.05 Aligned_cols=77 Identities=32% Similarity=0.569 Sum_probs=64.9
Q ss_pred ceeeecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEec---------CCe-----eeecCe
Q 034651 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK---------KNT-----RKPLGR 72 (88)
Q Consensus 7 ~~~~~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~---------~~~-----~~~~g~ 72 (88)
.+.+..|+++|.++++++ |.|.|+ +|++|+|+|.|||+||||+|+||+|++.+ +.. .+.+|.
T Consensus 23 ~~~~~~Pl~lL~~~l~k~--V~V~Lk--~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~ 98 (121)
T 2fwk_A 23 GGNIILPLALIDKCIGNR--IYVVMK--GDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLET 98 (121)
T ss_dssp -CCCCCHHHHHHHTBTSB--CEEEET--TTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSE
T ss_pred cccccCcHHHHHHHcCCe--EEEEEC--CCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcce
Confidence 446789999999999997 666665 56999999999999999999999999743 223 788999
Q ss_pred EEEeCCcEEEEEecC
Q 034651 73 ILLKGDNITLMMNTG 87 (88)
Q Consensus 73 v~iRG~~I~~I~~~~ 87 (88)
++|||++|++|.+.+
T Consensus 99 v~IRG~nVv~I~~~~ 113 (121)
T 2fwk_A 99 ILLSGNNVAMLVPGG 113 (121)
T ss_dssp EEECGGGEEEEESSS
T ss_pred EEECCCEEEEEEecC
Confidence 999999999999875
No 15
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1.6e-23 Score=131.11 Aligned_cols=73 Identities=29% Similarity=0.518 Sum_probs=63.0
Q ss_pred eecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEec----C--------CeeeecCeEEEeC
Q 034651 10 MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIK----K--------NTRKPLGRILLKG 77 (88)
Q Consensus 10 ~~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~----~--------~~~~~~g~v~iRG 77 (88)
...|+++|+.+++++ |.|+|+ +|++|+|+|.|||+|||++|+||+|++.. + ...+.+|.++|||
T Consensus 7 ~~~Pl~lL~~~~~~~--V~V~l~--~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG 82 (93)
T 4emg_A 7 VAEPLDLVRLSLDEI--VYVKLR--GDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRG 82 (93)
T ss_dssp --CTTHHHHTTTTSE--EEEEET--TTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECG
T ss_pred cCCCHHHHHHhCCCE--EEEEEC--CCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECC
Confidence 579999999999996 888886 46999999999999999999999999752 2 2578999999999
Q ss_pred CcEEEEEec
Q 034651 78 DNITLMMNT 86 (88)
Q Consensus 78 ~~I~~I~~~ 86 (88)
+||++|+|+
T Consensus 83 ~nVv~I~p~ 91 (93)
T 4emg_A 83 DSVILIAPP 91 (93)
T ss_dssp GGEEEEECC
T ss_pred CeEEEEEec
Confidence 999999986
No 16
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1.1e-23 Score=134.59 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=54.8
Q ss_pred ecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEecC
Q 034651 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87 (88)
Q Consensus 11 ~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~~ 87 (88)
-.|+.+|.++++++ |+|+|++ |++|+|+|.|||+|||++|+||+|++.+++..+.+|.++|||+||++|.+++
T Consensus 15 ~~p~~lL~~~igk~--V~V~Lk~--G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd 87 (105)
T 4emh_A 15 MLPLTLLNATQGRP--ILVELKN--GETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQD 87 (105)
T ss_dssp -----------CCE--EEEEETT--SCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC--
T ss_pred CcHHHHHHHhCCCE--EEEEECC--CCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCH
Confidence 47999999999996 9999976 5899999999999999999999998555557899999999999999999875
No 17
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.89 E-value=1.7e-23 Score=135.77 Aligned_cols=80 Identities=19% Similarity=0.444 Sum_probs=62.3
Q ss_pred ceeeecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecC-------------CeeeecCeE
Q 034651 7 QRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK-------------NTRKPLGRI 73 (88)
Q Consensus 7 ~~~~~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~-------------~~~~~~g~v 73 (88)
...+..|+++|.++++...+|.|+|++ |++|.|+|.|||+|||++|+||+|++... ...+.+|.+
T Consensus 22 ~~~~~~Pl~lL~~~~~~~k~V~V~Lk~--gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v 99 (118)
T 1b34_B 22 EEFNTGPLSVLTQSVKNNTQVLINCRN--NKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKM 99 (118)
T ss_dssp ----CCHHHHHHHHHHHTCEEEEEETT--SCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEE
T ss_pred hhcccChHHHHHHHhcCCcEEEEEECC--CcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeE
Confidence 345789999999999632359999875 59999999999999999999999986321 124579999
Q ss_pred EEeCCcEEEEEecCC
Q 034651 74 LLKGDNITLMMNTGK 88 (88)
Q Consensus 74 ~iRG~~I~~I~~~~~ 88 (88)
||||+||++|.++++
T Consensus 100 ~IRG~nVv~I~~~~~ 114 (118)
T 1b34_B 100 FLRGDSVIVVLRNPL 114 (118)
T ss_dssp EECGGGEEEEEECCC
T ss_pred EEcCCEEEEEEeCch
Confidence 999999999999763
No 18
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.89 E-value=3e-23 Score=125.37 Aligned_cols=71 Identities=23% Similarity=0.507 Sum_probs=50.4
Q ss_pred chHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEecCC
Q 034651 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTGK 88 (88)
Q Consensus 13 Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~~~ 88 (88)
|-.+|.++++++ |.|+|++ |++|+|+|.|||+|||++|+||+|+. .+++.+.+|.++|||+||++|++.+.
T Consensus 5 ~~~~L~~~~~k~--V~V~Lk~--gr~~~G~L~~~D~~mNlvL~~~~e~~-~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 5 HPPELKKFMDKK--LSLKLNG--GRHVQGILRGFDPFMNLVIDECVEMA-TSGQQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp ---------CCE--EEEEETT--TEEEEEEEEEECTTCCEEEEEEEECC-CC----CBSSEEECSSSEEEEEC---
T ss_pred chHHHHHhCCCe--EEEEECC--CcEEEEEEEEECCcceEEEeceEEEc-cCCcEeEcCEEEECCCeEEEEEeccC
Confidence 456789999996 8888865 69999999999999999999999984 45578999999999999999998763
No 19
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.88 E-value=7e-23 Score=132.33 Aligned_cols=79 Identities=29% Similarity=0.446 Sum_probs=54.4
Q ss_pred ccceeeecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecC------CeeeecCeEEEeCC
Q 034651 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKK------NTRKPLGRILLKGD 78 (88)
Q Consensus 5 ~~~~~~~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~------~~~~~~g~v~iRG~ 78 (88)
++.++...|+..|.++++++ |.|.++ +|++|+|+|.|||+||||+|+||+|++.+. ...+.+|.++|||+
T Consensus 16 ~~~~~kke~i~~L~~~l~k~--V~V~L~--dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~ 91 (113)
T 4emk_C 16 PTERPRKESILDLSRYQDQR--IQATFT--GGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGT 91 (113)
T ss_dssp ----------------CCSE--EEEEET--TSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTT
T ss_pred CccCCccchHHHHHHHcCCc--EEEEEe--CCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCC
Confidence 34666778999999999997 777775 579999999999999999999999996532 36899999999999
Q ss_pred cEEEEEecC
Q 034651 79 NITLMMNTG 87 (88)
Q Consensus 79 ~I~~I~~~~ 87 (88)
||++|.+++
T Consensus 92 nIv~I~~~d 100 (113)
T 4emk_C 92 TLVLIAPMD 100 (113)
T ss_dssp TEEEEEECC
T ss_pred eEEEEEecC
Confidence 999999875
No 20
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.88 E-value=9.8e-23 Score=132.47 Aligned_cols=71 Identities=20% Similarity=0.368 Sum_probs=64.7
Q ss_pred cchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEecC
Q 034651 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87 (88)
Q Consensus 12 ~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~~ 87 (88)
.|+.+|.+++++. |+|+|++ |++|+|+|.+||+|||++|+||+|+ ..+.+...++.++|||+||++|.+++
T Consensus 2 ~p~~~L~~~~gk~--V~V~Lk~--g~~~~G~L~~~D~~MNlvL~d~~e~-~~~~~~~~lg~v~IRG~nI~~I~~pd 72 (119)
T 1b34_A 2 KLVRFLMKLSHET--VTIELKN--GTQVHGTITGVDVSMNTHLKAVKMT-LKNREPVQLETLSIRGNNIRYFILPD 72 (119)
T ss_dssp CHHHHHHTCTTCE--EEEEETT--CCEEEEEEEEECTTCCEEEEEEEEE-CTTSCCEEEEEEEECGGGEEEEECCT
T ss_pred ChHHHHHHhCCCE--EEEEEcC--CCEEEEEEEEEcccceEEeccEEEe-cCCCceeEcceEEEcCCeEEEEEecc
Confidence 6999999999986 9999975 5899999999999999999999999 45567789999999999999999876
No 21
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.86 E-value=2.8e-22 Score=124.40 Aligned_cols=72 Identities=25% Similarity=0.452 Sum_probs=59.6
Q ss_pred cchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEe---------cCCeeeecCeEEEeCCcEEE
Q 034651 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---------KKNTRKPLGRILLKGDNITL 82 (88)
Q Consensus 12 ~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~---------~~~~~~~~g~v~iRG~~I~~ 82 (88)
.|-..|.++++++ |.|.++ +|++|+|+|.|||+|||++|+||+|++. .+...+.+|.++|||+||++
T Consensus 4 ~~~~~L~~~~~k~--V~V~l~--~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~ 79 (91)
T 1d3b_B 4 GKSSKMLQHIDYR--MRCILQ--DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVS 79 (91)
T ss_dssp ---CCCGGGTTSE--EEEEET--TCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEE
T ss_pred ChhHHHHHHcCCc--EEEEEC--CCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEE
Confidence 4566788999996 777776 4699999999999999999999999752 23467899999999999999
Q ss_pred EEecC
Q 034651 83 MMNTG 87 (88)
Q Consensus 83 I~~~~ 87 (88)
|.+.+
T Consensus 80 i~~~~ 84 (91)
T 1d3b_B 80 MTVEG 84 (91)
T ss_dssp EEEEE
T ss_pred EEcCC
Confidence 99864
No 22
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.86 E-value=7.6e-22 Score=129.61 Aligned_cols=72 Identities=13% Similarity=0.221 Sum_probs=64.9
Q ss_pred ecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEecC
Q 034651 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87 (88)
Q Consensus 11 ~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~~ 87 (88)
..|+.+|.+++++. |+|+||+ |++|+|+|.+||+|||++|+||+|+. .+.+...++.+||||+||.||.+++
T Consensus 4 ~~P~~~L~~~~gk~--V~VeLkn--G~~~~G~L~~~D~~MNi~L~dv~e~~-~~g~~~~l~~v~IRGnnI~~I~lpd 75 (126)
T 2y9a_D 4 GVPIKVLHEAEGHI--VTCETNT--GEVYRGKLIEAEDNMNCQMSNITVTY-RDGRVAQLEQVYIRGSKIRFLILPD 75 (126)
T ss_dssp CCSHHHHHSCSSCE--EEEEESS--CCEEEEEEEEECTTSCEEEEEEEEEC-TTSCCEEEEEEEECGGGEEEEECCS
T ss_pred ccHHHHHHHhCCCE--EEEEECC--CcEEEEEEEEEcCceEEEEeeEEEEc-CCCcEeecccEEEeCCEEEEEEccc
Confidence 47999999999996 9999986 58999999999999999999999984 4456889999999999999999875
No 23
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.82 E-value=4.7e-20 Score=131.14 Aligned_cols=72 Identities=25% Similarity=0.463 Sum_probs=61.5
Q ss_pred cchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEe---------cCCeeeecCeEEEeCCcEEE
Q 034651 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHI---------KKNTRKPLGRILLKGDNITL 82 (88)
Q Consensus 12 ~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~---------~~~~~~~~g~v~iRG~~I~~ 82 (88)
.+-..|.++++++ |.|+|++ |++|+|+|++||+||||||+||+|++. ...+.+.++.+||||+||++
T Consensus 4 ~k~~kL~klIdKr--V~V~Lkd--GRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~ 79 (231)
T 3pgw_B 4 GKSSKMLQHIDYR--MRCILQD--GRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVS 79 (231)
T ss_pred CchHHHHHhcCCe--EEEEECC--CcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEE
Confidence 4566789999997 7777764 699999999999999999999999863 12468999999999999999
Q ss_pred EEecC
Q 034651 83 MMNTG 87 (88)
Q Consensus 83 I~~~~ 87 (88)
|+..+
T Consensus 80 Isve~ 84 (231)
T 3pgw_B 80 MTVEG 84 (231)
T ss_pred EEecC
Confidence 98653
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.78 E-value=2.6e-19 Score=118.08 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=57.4
Q ss_pred HHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEecC
Q 034651 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNTG 87 (88)
Q Consensus 15 ~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~~ 87 (88)
.+|.++++++ |+|+|++ |++|+|+|.|||+|||++|+||+|+. .+.+|.++|||+||++|.+++
T Consensus 3 ~~L~~~igk~--V~V~Lk~--G~~~~G~L~~~D~~MNlvL~d~~E~~-----~~~lg~v~IRG~nI~~I~~~d 66 (130)
T 1m5q_A 3 AELNNLLGRE--VQVVLSN--GEVYKGVLHAVDNQLNIVLANASNKA-----GEKFNRVFIMYRYIVHIDSTE 66 (130)
T ss_dssp HHHHHTTTSE--EEEEETT--SCEEEEEEEEECTTCCEEEEEEECTT-----CCEEEEEEECGGGEEEEEECC
T ss_pred hHHHHhCCCe--EEEEECC--CcEEEEEEEEEcccceeEEeeEEEEc-----CCEeceEEEeCCeEEEEEcCC
Confidence 5789999996 9999875 59999999999999999999999972 368899999999999999875
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.28 E-value=3e-06 Score=52.00 Aligned_cols=64 Identities=11% Similarity=0.164 Sum_probs=50.7
Q ss_pred ecchHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEec-cccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEec
Q 034651 11 TQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFD-EYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMNT 86 (88)
Q Consensus 11 ~~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~~ 86 (88)
..|+ .|..+++|+ |.|.+. +|+.|+|+|.+|| .-.|++|.|+. + ...+..++|-|..|.-|...
T Consensus 7 ~~p~-el~~li~Ke--V~V~l~--dg~~y~G~l~tvDp~s~sIvL~n~~----~---~~~~~~~iI~G~aI~eI~v~ 71 (86)
T 1y96_A 7 KGPL-EWQDYIYKE--VRVTAS--EKNEYKGWVLTTDPVSANIVLVNFL----E---DGSMSVTGIMGHAVQTVETM 71 (86)
T ss_dssp SCHH-HHHHTTTCE--EEEEET--TTEEEEEEEEEECTTTCCEEEEEEC----T---TSCEEEEEECGGGEEEEEEE
T ss_pred CCHH-HHHhhcCCE--EEEEEc--CCCEEEEEEEEECCCceEEEEeecc----c---CCeEEEEEEecceEEEEEEe
Confidence 3576 458999997 677664 5799999999999 99999999982 1 12346899999999888764
No 26
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=97.69 E-value=1.8e-05 Score=46.91 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=30.0
Q ss_pred HHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEec
Q 034651 16 LIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (88)
Q Consensus 16 ~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d 56 (88)
+|.....++++|+|.|.| |..++|.+.|||+|+=+.-.+
T Consensus 17 fLn~~r~~~~~Vtv~L~N--G~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 17 FEYARRLNGKKVKIFLRN--GEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp CCGGGGGTTCEEEEEETT--SCEEEEEEEEECSSEEEEEET
T ss_pred HHHHHHHcCCcEEEEEeC--CeEEEEEEEEEcceEEEEEeC
Confidence 344446667899999985 589999999999998655433
No 27
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.50 E-value=0.00012 Score=44.51 Aligned_cols=38 Identities=18% Similarity=0.521 Sum_probs=30.5
Q ss_pred HHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEE
Q 034651 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL 54 (88)
Q Consensus 15 ~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL 54 (88)
.+|..+..++++|+|.|.| |..++|.+.|||+|+=+.-
T Consensus 10 ~fLn~lrk~~~~Vtv~L~N--G~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 10 PYLNTLRKERVPVSIYLVN--GIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHHTTCCEEEEETT--SCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeC--CcEEEEEEEEEcceEEEEe
Confidence 3566666677899999985 5899999999999985544
No 28
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.45 E-value=0.00011 Score=44.19 Aligned_cols=37 Identities=16% Similarity=0.545 Sum_probs=29.7
Q ss_pred HHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEE
Q 034651 16 LIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL 54 (88)
Q Consensus 16 ~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL 54 (88)
+|..+..++++|+|.|.| |..++|.+.|||+|+=+.-
T Consensus 15 fLn~lrk~~~~Vtv~L~n--G~~l~G~I~~fD~f~VlL~ 51 (78)
T 3ahu_A 15 FLNQIRKENTYVTVFLLN--GFQLRGQVKGFDNFTVLLE 51 (78)
T ss_dssp HHHHHHHHTCCEEEEETT--SCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHcCCcEEEEEeC--CeEEEEEEEEEcceEEEEE
Confidence 455566667889999985 5899999999999985554
No 29
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=97.36 E-value=0.00023 Score=42.96 Aligned_cols=37 Identities=19% Similarity=0.563 Sum_probs=30.5
Q ss_pred HHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceE
Q 034651 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLV 53 (88)
Q Consensus 15 ~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlv 53 (88)
.+|..+..++++|+|.|.| |..++|.+.+||+|+=+.
T Consensus 11 ~fLn~lrk~k~~VtI~Lvn--G~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 11 PFLNALRKEHVPVSIYLVN--GIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp HHHHHHHHTTCCEEEEETT--SCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHhcCCeEEEEEeC--CCEEEEEEEEECCcEEEE
Confidence 4567777778899999976 479999999999998554
No 30
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.32 E-value=0.00022 Score=42.81 Aligned_cols=40 Identities=13% Similarity=0.420 Sum_probs=31.4
Q ss_pred HHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEec
Q 034651 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (88)
Q Consensus 15 ~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d 56 (88)
.+|..+..++++|+|.|.| |..++|.+.+||+|+=+.-.+
T Consensus 10 ~fLn~lrk~k~~VtI~L~n--G~~l~G~I~~fD~f~VlL~~~ 49 (77)
T 1kq1_A 10 KALENFKANQTEVTVFFLN--GFQMKGVIEEYDKYVVSLNSQ 49 (77)
T ss_dssp HHHHHHHHHTCEEEEEETT--SCEEEEEEEEECSSEEEEEET
T ss_pred HHHHHHHhcCCeEEEEEeC--CCEEEEEEEEECCcEEEEEEC
Confidence 3566667677899999985 579999999999998655433
No 31
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.30 E-value=0.00022 Score=42.50 Aligned_cols=37 Identities=19% Similarity=0.568 Sum_probs=29.9
Q ss_pred HHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceE
Q 034651 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLV 53 (88)
Q Consensus 15 ~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlv 53 (88)
.+|..+..++.+|+|.|.| |..++|.+.+||+|+=+.
T Consensus 12 ~~L~~lrk~k~~Vti~L~n--G~~l~G~I~~fD~f~vlL 48 (74)
T 2ylb_A 12 PFLNALRRERVPVSIYLVN--GIKLQGQIESFDQFVILL 48 (74)
T ss_dssp HHHHHHHHHTCCEEEEETT--SCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHhcCCcEEEEEeC--CCEEEEEEEEECCcEEEE
Confidence 3566777777899999975 579999999999998444
No 32
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=97.28 E-value=0.00029 Score=44.47 Aligned_cols=39 Identities=18% Similarity=0.540 Sum_probs=31.9
Q ss_pred HHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEe
Q 034651 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLD 55 (88)
Q Consensus 15 ~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~ 55 (88)
.+|..+..++++|+|.|.+ |..++|++.+||+|+=++-.
T Consensus 12 ~fLn~lrk~k~~VtI~LvN--G~~L~G~I~~fD~f~VlL~~ 50 (104)
T 2y90_A 12 PFLNALRRERVPVSIYLVN--GIKLQGQIESFDQFVILLKN 50 (104)
T ss_dssp HHHHHHHHTTCCEEEEETT--SCEEEEEEEEECSSEEEEES
T ss_pred HHHHHHHhcCCcEEEEEeC--CCEEEEEEEEECCcEEEEEC
Confidence 4677777888899999986 57999999999999855543
No 33
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=95.81 E-value=0.011 Score=34.77 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=34.9
Q ss_pred ecc-hHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEE
Q 034651 11 TQP-INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL 54 (88)
Q Consensus 11 ~~P-l~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL 54 (88)
.+| +..|..++..+.+|.|+|.+ |-.++|.+.-+|.|.=+.-
T Consensus 7 ~lPsvR~lQ~~ik~k~~V~I~L~t--G~~l~G~i~WQD~~cl~L~ 49 (70)
T 3hfo_A 7 GLPSVRQVQLLIKDQTPVEIKLLT--GDSLFGTIRWQDTDGLGLV 49 (70)
T ss_dssp SCHHHHHHHHHHHHTCEEEEEETT--SCEEEEEEEEECSSEEEEE
T ss_pred CCCcHHHHHHHHhhCceEEEEecC--CCEEEEEEEEeCCCEEEEE
Confidence 466 88999999999888888865 5799999999999975554
No 34
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=95.40 E-value=0.027 Score=33.19 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=43.9
Q ss_pred ecc-hHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEe
Q 034651 11 TQP-INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 85 (88)
Q Consensus 11 ~~P-l~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~ 85 (88)
.+| +..|..++..+.+|.|+|.+ |-.++|.+.-+|.|.=+.-++. . ...+|.-..|.+|.+
T Consensus 9 ~lPsvR~lQ~~Ik~k~~V~I~L~t--Gd~l~G~i~WQD~~cl~L~~~~-~-----------~~~LI~R~AI~~Ikp 70 (72)
T 3hfn_A 9 SLPSIRQLQNLIKQAAPVEIKLVT--GDAITGRVLWQDPTCVCIADEN-S-----------RQTTIWKQAIAYLQP 70 (72)
T ss_dssp CHHHHHHHHHHHSSCCEEEEEETT--SCEEEEEEEEECSSEEEEEC---------------CEEEEEGGGEEEEEE
T ss_pred CCCcHHHHHHHHhhCceEEEEecC--CCEEEEEEEEECCCEEEEEcCC-C-----------CeEEEEeeeeEEEEe
Confidence 466 88999999999888888865 5799999999999874444332 1 135566666676665
No 35
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.63 E-value=0.22 Score=28.76 Aligned_cols=61 Identities=21% Similarity=0.344 Sum_probs=38.4
Q ss_pred HHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEe
Q 034651 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 85 (88)
Q Consensus 15 ~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~ 85 (88)
..|+++-+++ |.+-+ ++...|+|+|.-||+-. +.|+|+..+. +. +-..++++=+.|--|..
T Consensus 9 ktL~~WKg~r--vAv~v--g~ehSFtGiledFDeEv-iLL~dV~D~~--GN---k~k~liv~idDinWimL 69 (71)
T 1ycy_A 9 KVLKEWKGHK--VAVSV--GGDHSFTGTLEDFDEEV-ILLKDVVDVI--GN---RGKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHTTSE--EEEEE--C----CEEEEEEECSSE-EEEEEEEETT--EE---EEEEEEEEGGGEEEEEE
T ss_pred HHHHHhCCcE--EEEEe--cCcceeeeehhhcCcce-eehhhHHHHh--cc---ccceeEEEeccceEEEe
Confidence 4678888887 44443 55689999999999975 7788887662 21 22356666666655543
No 36
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=94.21 E-value=0.42 Score=29.06 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=45.8
Q ss_pred hhcCcceEEEEEEeCCCeEEEEEEEEeccc-cceEEeceEEEEecCC--------eeeecCeEEEeCCcEEEEEec
Q 034651 20 FLQSKARIQIWLFEQKDLRIEGRIIGFDEY-MNLVLDDAEEVHIKKN--------TRKPLGRILLKGDNITLMMNT 86 (88)
Q Consensus 20 ~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~-mNlvL~d~~e~~~~~~--------~~~~~g~v~iRG~~I~~I~~~ 86 (88)
|++++ +.+. ...+..|+|+|...|.. --+.|+|+..+-+++. ...-+..++.||+.|.-+...
T Consensus 11 yIGs~--iSLI--Sk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~ 82 (88)
T 2vxe_A 11 ELGSK--ISLI--SKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVV 82 (88)
T ss_dssp CTTCE--EEEE--ETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEEC
T ss_pred ccCCe--EEEE--ECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEe
Confidence 58886 4444 45679999999999976 4577999887744321 234456899999999887654
No 37
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=93.48 E-value=0.26 Score=30.38 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=45.9
Q ss_pred HHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccc-cceEEeceEEEEecC--------CeeeecCeEEEeCCcEEEEEec
Q 034651 16 LIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEY-MNLVLDDAEEVHIKK--------NTRKPLGRILLKGDNITLMMNT 86 (88)
Q Consensus 16 ~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~-mNlvL~d~~e~~~~~--------~~~~~~g~v~iRG~~I~~I~~~ 86 (88)
.-..|+|++ +.+. ...+..|+|+|..+|.- --+.|+|+..+-+++ ....-+..++.||+.|.-+...
T Consensus 13 ~~~~~IGs~--ISLI--Sk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~ 88 (95)
T 2fb7_A 13 GGTPYIGSK--ISLI--SKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVC 88 (95)
T ss_dssp ---CCSSEE--EEEE--ETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEES
T ss_pred ccCcccCCe--EEEE--ECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEe
Confidence 345678886 4444 45679999999999954 457788887664332 1235567999999999877653
No 38
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=86.40 E-value=2.4 Score=25.48 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=42.2
Q ss_pred HhhcCcceEEEEEEeCCCe-EEEEEEEEeccc-cceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEe
Q 034651 19 RFLQSKARIQIWLFEQKDL-RIEGRIIGFDEY-MNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 85 (88)
Q Consensus 19 ~~l~k~~~V~V~lk~~~g~-~~~G~L~~~D~~-mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~ 85 (88)
+|+++. |.+.+++ +. .|.|.|..+|.. -||.|.++. ..| -+.....+.+|+.-|.-+..
T Consensus 6 ~~iGs~--VSi~c~d--~lGvYQG~i~~vd~~~~tItL~~~f---~NG-~~~~s~eVtls~~DI~~L~i 66 (84)
T 2vc8_A 6 DWLGSI--VSINCGD--SLGVYQGRVSAVDQVSQTISLTRPF---HNG-VKCLVPEVTFRAGDITELKI 66 (84)
T ss_dssp TTTTCE--EEEECCT--TTCEEEEEEEEEETTTTEEEEEEEE---ETT-EECSSSEEEEEGGGCSEEEE
T ss_pred cccCCE--EEEEECC--CceEEEEEEEEeccCCCeEEEehhh---hCC-CCCCCcEEEEEecChhheEE
Confidence 578885 7777765 45 999999999987 479999983 233 34444678888886654443
No 39
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=77.44 E-value=2.5 Score=27.85 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=25.1
Q ss_pred HHHHhhcCcceEEEEEEe--CCCeEEEEEEEEeccccceEE
Q 034651 16 LIFRFLQSKARIQIWLFE--QKDLRIEGRIIGFDEYMNLVL 54 (88)
Q Consensus 16 ~L~~~l~k~~~V~V~lk~--~~g~~~~G~L~~~D~~mNlvL 54 (88)
-+.+|+|+. |.|+++. .+.+.++|+|.++|.- .++|
T Consensus 98 df~r~~G~~--V~V~l~~~~~g~k~~~G~L~~~~~~-~v~l 135 (164)
T 1ib8_A 98 AVAGAVGKY--IHVGLYQAIDKQKVFEGTLLAFEED-ELTM 135 (164)
T ss_dssp HHHHHCSEE--EEEECSSCSSSCSEEEEEEEEEETT-EEEE
T ss_pred HHHHhCCcE--EEEEEecccCCceEEEEEEEEEeCC-EEEE
Confidence 346788986 6666642 2348999999999875 3444
No 40
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=76.68 E-value=3.4 Score=26.53 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=29.8
Q ss_pred HHhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEE--eceEE
Q 034651 18 FRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL--DDAEE 59 (88)
Q Consensus 18 ~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL--~d~~e 59 (88)
..|++.. |.|.|++ |..++|++..+|. =+|+| .+|..
T Consensus 8 sqFlGy~--V~v~LkD--gs~~qG~I~~vd~-k~LtL~~~~a~~ 46 (125)
T 4a53_A 8 ADFYGSN--VEVLLNN--DSKARGVITNFDS-SNSILQLRLAND 46 (125)
T ss_dssp HHHTTCE--EEEEETT--SCEEEEEEEEEET-TTTEEEEEETTT
T ss_pred HHhcCce--EEEEECC--CCEeeEEEEeecC-CeeEEecccccc
Confidence 6789986 8888875 5899999999984 57888 88743
No 41
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=73.38 E-value=12 Score=22.37 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=43.7
Q ss_pred hHHHHHhhcCcceEEEEEEeCCCeEEEEEEEEeccc-cceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEe
Q 034651 14 INLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEY-MNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 85 (88)
Q Consensus 14 l~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~-mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~ 85 (88)
|..|....++. |.+.++. +....|+..++|.. .|+..++- ++ . -...+..++|+.-|++++-
T Consensus 21 Lr~l~~m~~~~--v~f~m~E--~t~V~a~F~a~d~d~~~f~Vs~L-~T--P---iGv~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 21 LRSLLAMVGHQ--VSFTLHE--GVRVAAHFGATDLDVANFYVSQL-QT--P---IGVQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHHHHTTSE--EEEEEGG--GCEEEEEEEEECTTCCEEEEEEE-CC--T---TCCEEEEEEEGGGEEEEEE
T ss_pred HHHHHHhCCCc--eEEEEeC--CeEEEEEEEecCcccceeEhhhc-CC--C---cccchhhhhhcCCEEEEEe
Confidence 66677766764 8887775 47999999999975 45554442 21 1 2236689999999998864
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=64.69 E-value=10 Score=26.57 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=23.6
Q ss_pred eEEEEEEeCCCeEEEEEEEEeccccceEEece
Q 034651 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA 57 (88)
Q Consensus 26 ~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~ 57 (88)
+|.+.. .++..++|+..|+|+.-.|+|++.
T Consensus 226 ~V~v~~--~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 226 RVRVEL--PGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp EEEEEC--TTSCEEEEEEEEECTTSCEEEEET
T ss_pred EEEEEE--CCCeEEEEEEEEECCCCeEEEEEC
Confidence 466643 345789999999999999999754
No 43
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=60.37 E-value=22 Score=20.45 Aligned_cols=39 Identities=26% Similarity=0.178 Sum_probs=25.3
Q ss_pred hcCcceEEEEEEeCCCeEEEEEEEEeccccceEE-eceEEEEec
Q 034651 21 LQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL-DDAEEVHIK 63 (88)
Q Consensus 21 l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL-~d~~e~~~~ 63 (88)
++.. |.+ +..+|+.|-|+++...+.-=+|. +|-.+.|..
T Consensus 18 ~geD--VL~--rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 18 LQED--VFI--KCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp TTCE--EEE--ECTTSCEEEEEEEEECSSCEEEEETTCCEEEEC
T ss_pred cCCe--EEE--EecCCCEEEEEEEecCCceEEEEecCCcceeee
Confidence 4554 665 46789999999976665544443 565666543
No 44
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=60.15 E-value=40 Score=23.82 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=29.7
Q ss_pred eEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeC
Q 034651 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77 (88)
Q Consensus 26 ~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG 77 (88)
+|.+.. + +..++|+..|+|+.-.|++++.... +....|.+.+|+
T Consensus 275 ~V~v~~--~-~~~~~G~~~gid~~G~L~v~~~~g~-----~~~~~Gev~~r~ 318 (321)
T 1bia_A 275 PVKLII--G-DKEIFGISRGIDKQGALLLEQDGII-----KPWMGGEISLRS 318 (321)
T ss_dssp EEEEEE--T-TEEEEEEEEEECTTSCEEEEETTEE-----EEESSCEEEEC-
T ss_pred EEEEEE--C-CcEEEEEEEEECCCCeEEEEECCCE-----EEEEeeeEEEec
Confidence 466653 3 4689999999999999999753221 233446666664
No 45
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=55.61 E-value=11 Score=25.67 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=27.7
Q ss_pred eEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCeeeecCeEEEeC
Q 034651 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKG 77 (88)
Q Consensus 26 ~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG 77 (88)
+|.+. .+ +. ++|+..|+|+.-.|++++.... +....|.+.+|+
T Consensus 190 ~V~v~--~~-~~-~~G~~~gId~~G~L~v~~~~G~-----~~~~~Gev~~r~ 232 (233)
T 2eay_A 190 EVKLL--GE-GK-ITGKLVGLSEKGGALILTEEGI-----KEILSGEFSLRR 232 (233)
T ss_dssp EEEET--TE-EE-EEEEEEEECTTSCEEEEETTEE-----EEECSCCEEEC-
T ss_pred EEEEE--EC-Ce-EEEEEEEECCCCeEEEEECCCe-----EEEEEeEEEEec
Confidence 46664 22 34 9999999999999999753211 223346666664
No 46
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=42.22 E-value=36 Score=18.87 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=22.5
Q ss_pred EEEEEEeCCCeEEEEEEEEecccc---ceEEeceEEEE
Q 034651 27 IQIWLFEQKDLRIEGRIIGFDEYM---NLVLDDAEEVH 61 (88)
Q Consensus 27 V~V~lk~~~g~~~~G~L~~~D~~m---NlvL~d~~e~~ 61 (88)
|.+ +..+|+.|-|+++.+|..- =+...|..+.|
T Consensus 10 VLa--rwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W 45 (58)
T 4hcz_A 10 VLA--RWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFL 45 (58)
T ss_dssp EEE--ECTTSCEEEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEE--EecCCCEEeEEEEEEecCCCEEEEEEcCCCeEE
Confidence 444 5678999999999988763 23335555554
No 47
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=41.40 E-value=56 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCeEEEEEEEEeccccceEEec
Q 034651 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (88)
Q Consensus 26 ~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d 56 (88)
+|.+.. +++..++|+..|+|+.-.|+ ++
T Consensus 194 ~V~v~~--~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 194 QVKILL--SNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp EEEEEE--TTSCEEEEEEEEECSSEEEE-EE
T ss_pred EEEEEE--CCCeEEEEEEEEECCCCeEE-Ec
Confidence 466654 44434999999999999998 64
No 48
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.25 E-value=1.9 Score=26.67 Aligned_cols=18 Identities=28% Similarity=0.232 Sum_probs=16.5
Q ss_pred EEEEEeccccceEEeceE
Q 034651 41 GRIIGFDEYMNLVLDDAE 58 (88)
Q Consensus 41 G~L~~~D~~mNlvL~d~~ 58 (88)
|+...||.-.|+.|++|.
T Consensus 35 ~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 35 NITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SCEEECCTTHHHHHHHHH
T ss_pred CeEeechHHHHHHHHHHH
Confidence 678999999999999885
No 49
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=36.45 E-value=74 Score=19.49 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=43.7
Q ss_pred HhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEEecCCe--eeecCeEEEeCCcEEEEEec
Q 034651 19 RFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVHIKKNT--RKPLGRILLKGDNITLMMNT 86 (88)
Q Consensus 19 ~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~--~~~~g~v~iRG~~I~~I~~~ 86 (88)
+|+++- |.|.+.+. =..|.|.+...|+ -++.|.++.. ++- +.....+.+|..-|..+..+
T Consensus 9 dwiG~~--VSI~C~d~-LGVyQG~I~~V~~-~~ItL~kaFr----NGiplk~~~~EVtLsa~DI~~L~II 70 (103)
T 2rm4_A 9 DWIGCA--VSIACDEV-LGVFQGLIKQISA-EEITIVRAFR----NGVPLRKQNAEVVLKCTDIRSIDLI 70 (103)
T ss_dssp GGTTCE--EEEEECTT-TCEEEEEEEEEET-TEEEEEEEEE----TTEECSCSSSCEEEETTTEEEEEEE
T ss_pred ceeceE--EEEeeCCc-ceEeeEEEEEccc-ceeEEhhhhh----cCcCcCCCCceEEEEecchhheeee
Confidence 688986 88888653 3389999999996 4589988753 233 45556888888887776654
No 50
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=35.40 E-value=71 Score=19.36 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=23.2
Q ss_pred cchHHHHHhhcCcceEEEEEEeCCCeEEEEEEE
Q 034651 12 QPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44 (88)
Q Consensus 12 ~Pl~~L~~~l~k~~~V~V~lk~~~g~~~~G~L~ 44 (88)
.-|+-+-..++...+|.+++. +|+.+.|++.
T Consensus 16 a~Le~~~~~LdGq~~v~i~l~--DGs~l~GTva 46 (101)
T 2e12_A 16 ATLEHWVKLLDGQERVRIELD--DGSMIAGTVA 46 (101)
T ss_dssp HHHHHHHHTSCTTCEEEEEET--TSCEEEEEES
T ss_pred HHHHHHHHhhCCeeEEEEEEc--CCCeEeeeec
Confidence 346666777777778888885 5689999974
No 51
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=34.32 E-value=55 Score=23.34 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=21.9
Q ss_pred eEEEEEEeCCCeEEEEEEEEeccccceEEec
Q 034651 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (88)
Q Consensus 26 ~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d 56 (88)
+|.+.. + +..++|+..|+|+.-.|++++
T Consensus 281 ~V~v~~--~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 281 TLLFTE--N-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CEEEEC--C--CEEEEEEEEECTTSCEEEEE
T ss_pred EEEEEE--C-CeEEEEEEEEECCCCEEEEEE
Confidence 466653 3 468999999999999999974
No 52
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=33.69 E-value=49 Score=20.74 Aligned_cols=24 Identities=4% Similarity=0.016 Sum_probs=19.2
Q ss_pred hcCcceEEEEEEeCCCeEEEEEEEEecc
Q 034651 21 LQSKARIQIWLFEQKDLRIEGRIIGFDE 48 (88)
Q Consensus 21 l~k~~~V~V~lk~~~g~~~~G~L~~~D~ 48 (88)
+|.+ |+.|+.+|+.|.|++.+...
T Consensus 8 vGq~----V~akh~ngryy~~~V~~~~~ 31 (118)
T 2qqr_A 8 AGQK----VISKHKNGRFYQCEVVRLTT 31 (118)
T ss_dssp TTCE----EEEECTTSSEEEEEEEEEEE
T ss_pred cCCE----EEEECCCCCEEeEEEEEEee
Confidence 4554 67889999999999998754
No 53
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=32.02 E-value=53 Score=23.04 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=23.8
Q ss_pred EeccccceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEe
Q 034651 45 GFDEYMNLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 85 (88)
Q Consensus 45 ~~D~~mNlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~ 85 (88)
++|..|.+++.|+.-+...+.....-+.++|+|+.|..|.+
T Consensus 2 ~~~~~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~ 42 (418)
T 2qs8_A 2 SLDVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKK 42 (418)
T ss_dssp -----CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEE
T ss_pred CCCCCccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEeC
Confidence 56777888888877653222112233688899999988865
No 54
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=30.50 E-value=69 Score=18.13 Aligned_cols=21 Identities=14% Similarity=-0.005 Sum_probs=16.8
Q ss_pred EEEEeCCCeEEEEEEEEeccc
Q 034651 29 IWLFEQKDLRIEGRIIGFDEY 49 (88)
Q Consensus 29 V~lk~~~g~~~~G~L~~~D~~ 49 (88)
|.....+|+.|.|++..+|+.
T Consensus 20 VLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 20 VLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp EEEECTTSCEEEEEEEEEETT
T ss_pred EEEEEccCcEEEeEEEEEccC
Confidence 344457899999999999974
No 55
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=30.20 E-value=40 Score=22.93 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=19.9
Q ss_pred eEEEEEEeCCCeEEEEEEEEeccccceEEec
Q 034651 26 RIQIWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (88)
Q Consensus 26 ~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d 56 (88)
+|.+.. ++ . ++|+..|+|+.-.|++++
T Consensus 191 ~V~v~~--~~-~-~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 191 RVKILG--DG-S-FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp EEEC-------C-CEEEEEEECTTSCEEEEC
T ss_pred eEEEEE--CC-e-EEEEEEEECCCCEEEEEE
Confidence 466653 33 4 999999999999999975
No 56
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=25.78 E-value=77 Score=20.62 Aligned_cols=35 Identities=9% Similarity=0.045 Sum_probs=21.5
Q ss_pred ceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEe
Q 034651 51 NLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 85 (88)
Q Consensus 51 NlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~ 85 (88)
.++|+|+.-+...+.+...-+.++|+++-|..|.+
T Consensus 5 ~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig~ 39 (426)
T 3mkv_A 5 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSD 39 (426)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEES
T ss_pred cEEEECeEEEeCCCCcEecCcEEEEECCEEEEecC
Confidence 46777776652222233334578888888888764
No 57
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.08 E-value=1.3e+02 Score=21.55 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=34.8
Q ss_pred CCccccceeeecchHHHH---HhhcCcceEEEEEEeCCCeEEEEEEEEeccccceEEeceEEEE
Q 034651 1 MASTKVQRIMTQPINLIF---RFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVH 61 (88)
Q Consensus 1 ~~~~~~~~~~~~Pl~~L~---~~l~k~~~V~V~lk~~~g~~~~G~L~~~D~~mNlvL~d~~e~~ 61 (88)
||-. +++..+.|+-+|. -|...+ .+....+.|.|.|.+.=-.+-+.||.+..
T Consensus 1 ~s~~-~~~V~vhPlVll~I~dH~~R~~--------~~~~~rViG~LLG~~~~~~veV~nsF~~p 55 (338)
T 4b4t_U 1 MSLQ-HEKVTIAPLVLLSALDHYERTQ--------TKENKRCVGVILGDANSSTIRVTNSFALP 55 (338)
T ss_dssp -CCC-CSEEEECHHHHHHHHHHHHHHT--------TTCCSCCEEEEEEEECSSEEEEEEEEECC
T ss_pred CCCC-CCEEEEecHHHHHHHHHHHHhh--------cCCCCeEEEEEEeEEcCCEEEEEEEEEec
Confidence 7777 4777889976543 332211 12334678999999888888899998773
No 58
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*
Probab=22.72 E-value=1.5e+02 Score=20.53 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=21.7
Q ss_pred ceEEeceEEEEecCCeeeecCeEEEeCCcEEEEEe
Q 034651 51 NLVLDDAEEVHIKKNTRKPLGRILLKGDNITLMMN 85 (88)
Q Consensus 51 NlvL~d~~e~~~~~~~~~~~g~v~iRG~~I~~I~~ 85 (88)
.++|.|+.-+...+.....-+.++|+++-|..|.+
T Consensus 5 ~~~i~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~ 39 (423)
T 3feq_A 5 ITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTD 39 (423)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTEEEEEEC
T ss_pred EEEEEccEEEeCCCCcccCCceEEEECCEEEEecC
Confidence 56677776653223333444678888888877765
No 59
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=22.46 E-value=1.8e+02 Score=19.40 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=16.9
Q ss_pred EEEEEEEeccccceEEec
Q 034651 39 IEGRIIGFDEYMNLVLDD 56 (88)
Q Consensus 39 ~~G~L~~~D~~mNlvL~d 56 (88)
++|+..|+|+.-.|++++
T Consensus 202 ~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 202 RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp EEEEEEEECTTCCEEEEC
T ss_pred EEEEEEEECCCCeEEEEe
Confidence 899999999999999975
No 60
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=21.77 E-value=25 Score=25.50 Aligned_cols=40 Identities=40% Similarity=0.552 Sum_probs=12.2
Q ss_pred EEEEeccccc--------------eEEeceEEEEec-CCeeeecCeEEEeCCcEE
Q 034651 42 RIIGFDEYMN--------------LVLDDAEEVHIK-KNTRKPLGRILLKGDNIT 81 (88)
Q Consensus 42 ~L~~~D~~mN--------------lvL~d~~e~~~~-~~~~~~~g~v~iRG~~I~ 81 (88)
+..=+|.|+| .|++|.-|.+-+ |.-+|+++.-+-|-+||-
T Consensus 57 t~~KiDPYlNvD~GTMsP~qHGEVfVtdDG~EtDLDLGhYERFl~~~lt~~nNiT 111 (294)
T 2c5m_A 57 TSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLDIRLTKDNNLT 111 (294)
T ss_dssp ECCEEECBCCCCC-----------------------------------CCTTEEE
T ss_pred EEEecCCceeecCCCCCccccceEEEecCCccccccccchhhhcCCCCccccccc
Confidence 4456899999 788888887544 345677776666666653
No 61
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=20.90 E-value=1.3e+02 Score=20.18 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=19.4
Q ss_pred EEEEeCCCeEEEEEEEEeccccceEEec
Q 034651 29 IWLFEQKDLRIEGRIIGFDEYMNLVLDD 56 (88)
Q Consensus 29 V~lk~~~g~~~~G~L~~~D~~mNlvL~d 56 (88)
|.+-|++| .+.+++...++ .+.++=
T Consensus 35 v~l~dg~g-~~~a~i~~~~~--~~~~~i 59 (228)
T 1v6z_A 35 FTVFDGER-EALAEVVDLGP--PLRYRV 59 (228)
T ss_dssp EEEECSSC-EEEEEEEECCS--SCEEEE
T ss_pred EEEEeCCc-EEEEEEEECCC--eEEEEE
Confidence 55568899 99999999998 555543
No 62
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.42 E-value=47 Score=19.51 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=22.4
Q ss_pred EEEEeCCCeEEEEEEEEecccc---ceEEeceEEEE
Q 034651 29 IWLFEQKDLRIEGRIIGFDEYM---NLVLDDAEEVH 61 (88)
Q Consensus 29 V~lk~~~g~~~~G~L~~~D~~m---NlvL~d~~e~~ 61 (88)
|-.+..+|+.|-|+++.+|..- =+..+|..+.|
T Consensus 33 VLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W 68 (79)
T 2m0o_A 33 VLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFL 68 (79)
T ss_dssp EEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEE
Confidence 4445678999999999888643 24445555554
No 63
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=20.13 E-value=2.1e+02 Score=19.60 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=17.3
Q ss_pred EEEEeCCCeEEEEEEEEeccc
Q 034651 29 IWLFEQKDLRIEGRIIGFDEY 49 (88)
Q Consensus 29 V~lk~~~g~~~~G~L~~~D~~ 49 (88)
|.+-|++|..|.+++...++-
T Consensus 42 v~l~dg~g~~~~a~I~~~~~~ 62 (257)
T 1vhy_A 42 LELFDGSNHIYPAKIIESNKK 62 (257)
T ss_dssp EEEECSSSEEEEEEEEEECSS
T ss_pred EEEEcCCCCEEEEEEEEeeCC
Confidence 455688899999999999864
Done!