BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034652
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WYT|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Apo Form
 pdb|1WYT|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Apo Form
 pdb|1WYU|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Holo Form
 pdb|1WYU|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Holo Form
 pdb|1WYU|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Holo Form
 pdb|1WYU|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Holo Form
 pdb|1WYV|B Chain B, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Inhibitor-Bound Form
 pdb|1WYV|D Chain D, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Inhibitor-Bound Form
 pdb|1WYV|F Chain F, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Inhibitor-Bound Form
 pdb|1WYV|H Chain H, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
           The Glycine Cleavage System, In Inhibitor-Bound Form
          Length = 474

 Score = 27.7 bits (60), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 47  GLLMVGIG--LMYFPTCPQEALLLQQDIKEAKEYLE 80
           GLL +G     +YFP   +EAL+++    EAKE LE
Sbjct: 393 GLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLE 428


>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
           Methyl Ester (Hme)
 pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
           Methyl Ester (Hme)
 pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
           Methyl Ester (Hme)
 pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
           Methyl Ester (Hme)
 pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
           Methyl Ester (Hme)
 pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
           Methyl Ester (Hme)
          Length = 481

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 22  LQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQD 71
           LQ ++      GL+P++   +LG  G+          P C +E L L  D
Sbjct: 228 LQKAIEEDKQRGLVPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHID 277


>pdb|3LZC|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
 pdb|3LZC|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
 pdb|3LZD|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
           4fe-4s Cluster
 pdb|3LZD|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
           4fe-4s Cluster
          Length = 378

 Score = 25.4 bits (54), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 14/18 (77%)

Query: 70  QDIKEAKEYLERKGIDVS 87
             +KEAKE+LE +G +VS
Sbjct: 165 HQLKEAKEFLESEGFEVS 182


>pdb|2GFI|A Chain A, Crystal Structure Of The Phytase From D. Castellii At
          2.3 A
 pdb|2GFI|B Chain B, Crystal Structure Of The Phytase From D. Castellii At
          2.3 A
          Length = 458

 Score = 25.4 bits (54), Expect = 8.6,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 47 GLLMVGIGLMYFPTCPQEALLLQQDIKE----AKEYLERKGIDVS 87
          GLL+VG G       PQ+A + Q +I      A  Y++ KG  +S
Sbjct: 8  GLLLVGQGAYQDLASPQQASVEQYNIIRFLGGAAPYIQNKGFGIS 52


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.145    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,329,470
Number of Sequences: 62578
Number of extensions: 75326
Number of successful extensions: 223
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 4
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)