BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034652
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3ZC71|DPM3_BOVIN Dolichol-phosphate mannosyltransferase subunit 3 OS=Bos taurus
GN=DPM3 PE=3 SV=1
Length = 92
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
LP Y +VS GCY L VG + F C A LQ I+EA+ L R+G+
Sbjct: 41 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLTRRGL 90
>sp|Q5R8B1|DPM3_PONAB Dolichol-phosphate mannosyltransferase subunit 3 OS=Pongo abelii
GN=DPM3 PE=3 SV=1
Length = 92
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
LP Y +VS GCY L VG + F C A LQ I+EA+ L R+G+
Sbjct: 41 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL 90
>sp|Q9P2X0|DPM3_HUMAN Dolichol-phosphate mannosyltransferase subunit 3 OS=Homo sapiens
GN=DPM3 PE=1 SV=2
Length = 92
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
LP Y +VS GCY L VG + F C A LQ I+EA+ L R+G+
Sbjct: 41 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL 90
>sp|Q9D1Q4|DPM3_MOUSE Dolichol-phosphate mannosyltransferase subunit 3 OS=Mus musculus
GN=Dpm3 PE=3 SV=1
Length = 92
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
LP Y +VS GCY L VG + F C A LQ I EA+ L R+G+
Sbjct: 41 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIVEARADLARRGL 90
>sp|Q76NT6|DPM3_DICDI Dolichol-phosphate mannosyltransferase subunit 3 OS=Dictyostelium
discoideum GN=dpm3 PE=3 SV=1
Length = 92
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 1 MKHVVKILTLLVAITALWFGL----LQTSVIP--RSHTGLLPIYFIVSLGCYGLLMVGIG 54
MK K+ + W L +Q ++ P +S LP+Y +V G Y L ++
Sbjct: 1 MKRYQKVFITFTFLMTFWLLLVLEKIQLNLSPSIQSIIPFLPLYAVVCFGSYSLGVIAYN 60
Query: 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86
L+ C + + L +IKEAKE L KG+ +
Sbjct: 61 LLIMSDCKEASESLFDEIKEAKESLRAKGMKL 92
>sp|Q9XVV5|DPM3_CAEEL Probable dolichol-phosphate mannosyltransferase subunit 3
OS=Caenorhabditis elegans GN=dpm-3 PE=3 SV=1
Length = 95
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 36 PIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
P + ++ LG Y + V G+ F C + + L +IKEA+E L+RK I
Sbjct: 45 PFFAVLFLGIYAVFNVVYGVATFNDCAEAKVELLGEIKEAREELKRKRI 93
>sp|O94633|DPM3_SCHPO Dolichol-phosphate mannosyltransferase subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dpm3 PE=1 SV=1
Length = 90
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 1 MKHVVKILTLLVAITALW-----FGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGL 55
M+ + K++ V++T L+ F L + R +T P FI++ G Y +GI L
Sbjct: 1 MQRIHKVILYYVSLTILYRVTYLFDLEEPWSTLRPYT---PYLFILAFGSY----LGITL 53
Query: 56 MYFPTC----PQEALLLQQDIKEAKEYLERKGIDVSE 88
+Y P+ + L +DIKEA++ L KG+ + +
Sbjct: 54 LYNVATTNDKPEAYVDLVKDIKEAQDALRSKGMTIED 90
>sp|Q10522|Y2240_MYCTU Uncharacterized protein Rv2240c/MT2300 OS=Mycobacterium
tuberculosis GN=Rv2240c PE=4 SV=1
Length = 265
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 21 LLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGI 53
L+ +PR H G LP ++LGC LL++GI
Sbjct: 71 LIGWRAVPRRHGGELPRRGALALGCIALLLMGI 103
>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) GN=rep
PE=1 SV=1
Length = 7180
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 21 LLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLE 80
LL ++PRS+ Y I S + LMV C ALL D+K A +Y++
Sbjct: 575 LLLDGLVPRSY------YLIKSGQAFTSLMVNFSREVVDMCMDMALLFMHDVKVATKYVK 628
Query: 81 R 81
+
Sbjct: 629 K 629
>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus (strain JHM) GN=1a
PE=1 SV=1
Length = 4474
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 21 LLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLE 80
LL ++PRS+ Y I S + LMV C ALL D+K A +Y++
Sbjct: 575 LLLDGLVPRSY------YLIKSGQAFTSLMVNFSREVVDMCMDMALLFMHDVKVATKYVK 628
Query: 81 R 81
+
Sbjct: 629 K 629
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.145 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,190,497
Number of Sequences: 539616
Number of extensions: 1038684
Number of successful extensions: 3743
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3735
Number of HSP's gapped (non-prelim): 21
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)