Query 034652
Match_columns 88
No_of_seqs 103 out of 150
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08285 DPM3: Dolichol-phosph 100.0 9.4E-44 2E-48 235.3 11.0 86 1-86 1-91 (91)
2 KOG4841 Dolichol-phosphate man 100.0 7.3E-30 1.6E-34 169.1 8.7 86 1-86 6-95 (95)
3 PRK11677 hypothetical protein; 93.3 0.35 7.6E-06 34.1 6.0 44 38-81 3-47 (134)
4 PF10112 Halogen_Hydrol: 5-bro 92.3 1.9 4.1E-05 30.9 8.7 18 64-81 69-86 (199)
5 PF14138 COX16: Cytochrome c o 91.6 0.14 3E-06 33.0 1.9 26 35-60 5-30 (80)
6 PF06305 DUF1049: Protein of u 90.9 1 2.2E-05 26.8 5.2 46 35-81 18-66 (68)
7 PF04977 DivIC: Septum formati 89.6 0.23 5.1E-06 30.1 1.6 40 41-80 2-41 (80)
8 PF01956 DUF106: Integral memb 89.4 1.6 3.5E-05 30.5 6.0 50 34-84 12-64 (168)
9 COG5664 Predicted secreted Zn- 85.9 0.94 2E-05 34.0 3.2 40 48-87 141-180 (201)
10 PF06295 DUF1043: Protein of u 85.3 2.7 5.9E-05 28.8 5.1 38 45-82 6-44 (128)
11 PRK06628 lipid A biosynthesis 82.3 7.2 0.00016 29.4 6.7 55 1-63 1-66 (290)
12 PF10815 ComZ: ComZ; InterPro 80.4 1.9 4.2E-05 26.5 2.4 19 69-87 11-29 (56)
13 TIGR02209 ftsL_broad cell divi 79.6 8.2 0.00018 23.8 5.3 41 38-78 6-46 (85)
14 COG4858 Uncharacterized membra 79.3 5.3 0.00011 30.5 5.0 46 5-50 162-208 (226)
15 TIGR00782 ccoP cytochrome c ox 77.8 5.7 0.00012 30.2 4.9 49 32-81 23-83 (285)
16 TIGR00116 tsf translation elon 77.5 0.93 2E-05 35.5 0.5 28 58-85 19-46 (290)
17 COG0264 Tsf Translation elonga 77.5 0.94 2E-05 35.9 0.6 28 58-85 20-47 (296)
18 PF06570 DUF1129: Protein of u 76.4 7.4 0.00016 28.2 5.0 44 5-48 147-191 (206)
19 COG1422 Predicted membrane pro 76.4 17 0.00037 27.4 7.0 18 60-77 76-93 (201)
20 PRK12332 tsf elongation factor 76.0 0.97 2.1E-05 33.5 0.3 28 58-85 19-46 (198)
21 CHL00098 tsf elongation factor 75.0 1.1 2.4E-05 33.3 0.3 28 58-85 16-43 (200)
22 COG4300 CadD Predicted permeas 74.6 7.7 0.00017 29.3 4.7 56 9-85 47-106 (205)
23 PRK09377 tsf elongation factor 74.3 1.3 2.8E-05 34.7 0.6 29 57-85 19-47 (290)
24 PF06476 DUF1090: Protein of u 73.9 8.6 0.00019 26.2 4.5 22 57-78 18-39 (115)
25 PF00638 Ran_BP1: RanBP1 domai 71.4 5 0.00011 26.4 2.9 22 56-78 101-122 (122)
26 PF14880 COX14: Cytochrome oxi 69.4 12 0.00025 22.5 3.9 39 36-74 17-55 (59)
27 PF02120 Flg_hook: Flagellar h 68.9 3.8 8.2E-05 25.0 1.7 28 60-87 45-72 (85)
28 PF09383 NIL: NIL domain; Int 68.3 3.8 8.1E-05 24.9 1.6 18 70-87 57-74 (76)
29 PF00578 AhpC-TSA: AhpC/TSA fa 68.2 6.5 0.00014 24.7 2.8 27 59-86 36-62 (124)
30 COG0695 GrxC Glutaredoxin and 67.8 4 8.7E-05 25.5 1.7 25 55-87 5-29 (80)
31 KOG2881 Predicted membrane pro 66.2 30 0.00065 27.5 6.6 50 25-83 125-174 (294)
32 PRK05905 hypothetical protein; 65.9 6.3 0.00014 30.1 2.7 28 57-84 211-238 (258)
33 PRK00888 ftsB cell division pr 65.5 37 0.0008 22.5 6.1 16 64-79 28-43 (105)
34 PF01687 Flavokinase: Riboflav 64.7 8.9 0.00019 26.3 3.1 25 56-80 101-125 (125)
35 TIGR01614 PME_inhib pectineste 64.0 5.6 0.00012 27.3 2.0 28 57-84 97-124 (178)
36 PF12862 Apc5: Anaphase-promot 63.7 19 0.00041 22.7 4.3 34 45-78 41-74 (94)
37 CHL00105 psaJ photosystem I su 63.2 10 0.00023 22.0 2.7 22 1-22 1-22 (42)
38 PF07544 Med9: RNA polymerase 63.0 13 0.00028 23.7 3.4 28 54-81 19-46 (83)
39 PF15141 DUF4574: Domain of un 62.6 6.8 0.00015 25.8 2.1 38 38-75 6-44 (84)
40 PRK00153 hypothetical protein; 62.2 6 0.00013 26.0 1.8 29 58-86 5-33 (104)
41 PRK02733 photosystem I reactio 61.2 12 0.00026 21.8 2.7 22 1-22 1-22 (42)
42 TIGR02501 type_III_yscE type I 61.0 13 0.00029 23.1 3.1 23 59-81 9-31 (67)
43 PRK15366 type III secretion sy 60.9 13 0.00029 24.3 3.2 25 58-82 11-35 (80)
44 PF09350 DUF1992: Domain of un 60.6 16 0.00035 22.8 3.5 32 50-81 39-70 (71)
45 cd04909 ACT_PDH-BS C-terminal 59.8 8.1 0.00017 22.4 1.9 17 70-86 53-69 (69)
46 PF09153 DUF1938: Domain of un 59.8 11 0.00024 25.0 2.7 22 66-87 35-56 (86)
47 PRK14627 hypothetical protein; 59.7 4.7 0.0001 26.8 1.0 28 58-85 3-30 (100)
48 COG3750 Uncharacterized protei 59.2 14 0.00029 24.5 3.0 26 61-86 26-51 (85)
49 PF10073 DUF2312: Uncharacteri 58.4 17 0.00036 23.5 3.3 26 61-86 16-41 (74)
50 PF08988 DUF1895: Protein of u 57.8 19 0.00042 22.6 3.5 23 60-82 11-33 (68)
51 COG1242 Predicted Fe-S oxidore 57.8 8.4 0.00018 30.8 2.2 38 49-86 114-184 (312)
52 cd03418 GRX_GRXb_1_3_like Glut 57.8 9.8 0.00021 22.1 2.0 24 55-86 4-27 (75)
53 PF01883 DUF59: Domain of unkn 56.8 9 0.0002 22.9 1.8 22 56-78 42-63 (72)
54 PF01007 IRK: Inward rectifier 56.6 44 0.00095 26.5 6.1 37 33-69 81-118 (336)
55 KOG2257 N-acetylglucosaminyltr 56.5 33 0.00071 24.5 4.8 65 10-74 20-96 (135)
56 PRK14626 hypothetical protein; 55.9 9.6 0.00021 25.8 2.0 28 58-85 7-34 (110)
57 PF10662 PduV-EutP: Ethanolami 55.7 9.9 0.00021 26.9 2.1 31 51-85 91-121 (143)
58 PF05726 Pirin_C: Pirin C-term 54.8 11 0.00023 24.4 2.0 15 69-83 88-102 (104)
59 PHA02734 coat protein; Provisi 54.7 12 0.00025 26.9 2.3 29 58-86 48-76 (149)
60 PF00462 Glutaredoxin: Glutare 53.8 11 0.00025 21.3 1.8 24 55-86 3-26 (60)
61 PF13071 DUF3935: Protein of u 52.7 22 0.00048 22.5 3.1 22 1-22 1-22 (68)
62 KOG4326 Mitochondrial F1F0-ATP 52.5 37 0.00079 22.2 4.2 30 40-69 11-42 (81)
63 COG4545 Glutaredoxin-related p 52.4 11 0.00025 24.8 1.8 14 74-87 17-30 (85)
64 PRK03947 prefoldin subunit alp 51.9 14 0.0003 25.0 2.3 30 51-80 82-111 (140)
65 PF09802 Sec66: Preprotein tra 51.6 20 0.00043 26.7 3.2 23 33-55 6-29 (190)
66 cd02106 Band_7 The band 7 doma 51.3 10 0.00023 23.2 1.5 29 60-88 72-101 (121)
67 PRK00650 4-diphosphocytidyl-2- 51.2 15 0.00033 28.5 2.7 27 57-83 194-220 (288)
68 PF04999 FtsL: Cell division p 50.8 59 0.0013 20.5 5.0 29 53-81 32-60 (97)
69 PRK14624 hypothetical protein; 50.7 11 0.00024 25.9 1.6 25 61-85 11-35 (115)
70 PRK02515 psbU photosystem II c 50.6 22 0.00047 25.3 3.1 22 1-22 1-22 (132)
71 PF04791 LMBR1: LMBR1-like mem 50.4 24 0.00052 28.1 3.7 44 33-76 166-209 (471)
72 PRK11637 AmiB activator; Provi 50.3 48 0.001 26.4 5.4 42 36-80 22-64 (428)
73 COG5509 Uncharacterized small 50.3 27 0.00058 22.0 3.2 23 62-84 31-53 (65)
74 PF11372 DUF3173: Domain of un 50.2 15 0.00032 22.7 2.0 17 70-86 21-37 (59)
75 PF10883 DUF2681: Protein of u 49.7 53 0.0012 21.6 4.7 40 37-76 4-43 (87)
76 PF04420 CHD5: CHD5-like prote 49.7 19 0.00042 25.4 2.8 23 59-81 36-58 (161)
77 PRK11087 oxidative stress defe 49.6 22 0.00047 26.3 3.2 31 57-87 49-79 (231)
78 PRK14629 hypothetical protein; 49.6 19 0.00041 24.1 2.6 22 63-84 10-31 (99)
79 TIGR02194 GlrX_NrdH Glutaredox 48.1 18 0.00039 21.4 2.1 24 55-86 3-26 (72)
80 PRK14621 hypothetical protein; 48.0 15 0.00033 25.0 2.0 28 57-84 5-32 (111)
81 PF14394 DUF4423: Domain of un 48.0 24 0.00051 25.2 3.1 27 55-81 124-150 (171)
82 PRK10329 glutaredoxin-like pro 48.0 17 0.00037 22.6 2.1 25 55-87 5-29 (81)
83 PF03793 PASTA: PASTA domain; 47.9 12 0.00027 21.5 1.4 16 71-86 10-25 (63)
84 PF02829 3H: 3H domain; Inter 47.6 19 0.00042 23.9 2.4 15 70-84 82-96 (98)
85 PF04402 SIMPL: Protein of unk 47.5 32 0.0007 23.8 3.6 27 59-85 27-53 (210)
86 TIGR00293 prefoldin, archaeal 47.5 17 0.00038 24.0 2.2 31 50-80 73-103 (126)
87 PF02352 Decorin_bind: Decorin 47.5 23 0.00051 25.4 2.9 25 63-87 6-30 (140)
88 PF13239 2TM: 2TM domain 47.4 67 0.0015 19.9 5.7 12 62-73 71-82 (83)
89 PF15136 UPF0449: Uncharacteri 47.3 23 0.00051 23.8 2.8 21 63-83 60-80 (97)
90 PF06522 B12D: NADH-ubiquinone 47.0 25 0.00053 21.9 2.7 27 33-59 5-31 (73)
91 COG2859 Uncharacterized protei 46.9 31 0.00066 26.7 3.7 29 58-86 65-93 (237)
92 cd00570 GST_N_family Glutathio 46.8 15 0.00033 19.7 1.6 25 55-87 3-27 (71)
93 cd00340 GSH_Peroxidase Glutath 46.7 15 0.00031 24.8 1.7 27 58-86 31-57 (152)
94 PF07439 DUF1515: Protein of u 46.7 27 0.00059 24.2 3.0 19 63-81 8-26 (112)
95 PRK09928 choline transport pro 46.4 1E+02 0.0022 27.2 7.1 57 31-87 481-572 (679)
96 smart00856 PMEI Plant invertas 45.7 18 0.00038 23.8 2.0 27 57-83 72-98 (148)
97 PF10256 Erf4: Golgin subfamil 45.6 45 0.00097 21.9 3.9 23 64-86 82-105 (118)
98 PRK03762 hypothetical protein; 45.4 11 0.00024 25.4 0.9 29 57-85 6-34 (103)
99 PF04518 Effector_1: Effector 45.1 65 0.0014 26.4 5.5 79 2-81 112-218 (379)
100 TIGR00103 DNA_YbaB_EbfC DNA-bi 44.8 17 0.00036 24.1 1.8 29 57-85 6-34 (102)
101 cd04882 ACT_Bt0572_2 C-termina 44.7 18 0.0004 20.2 1.7 15 72-86 50-64 (65)
102 COG4093 Uncharacterized protei 44.6 45 0.00099 27.0 4.4 45 32-87 16-60 (338)
103 PLN02879 L-ascorbate peroxidas 44.0 19 0.00042 27.6 2.2 24 59-82 4-27 (251)
104 COG1947 IspE 4-diphosphocytidy 43.8 23 0.00051 27.8 2.7 29 55-83 211-239 (289)
105 TIGR02302 aProt_lowcomp conser 43.7 1.3E+02 0.0027 27.3 7.4 31 40-70 52-83 (851)
106 PF09548 Spore_III_AB: Stage I 43.2 31 0.00067 24.4 3.0 20 64-83 132-151 (170)
107 cd04885 ACT_ThrD-I Tandem C-te 43.1 29 0.00063 20.4 2.5 19 70-88 50-68 (68)
108 TIGR02761 TraE_TIGR type IV co 42.7 37 0.0008 24.3 3.4 48 38-85 76-125 (181)
109 PRK14622 hypothetical protein; 42.7 13 0.00028 24.9 0.9 28 58-85 3-30 (103)
110 PF04184 ST7: ST7 protein; In 42.5 16 0.00035 31.3 1.7 28 57-85 197-228 (539)
111 PF00990 GGDEF: GGDEF domain; 42.3 25 0.00055 22.1 2.3 33 51-83 125-158 (161)
112 PRK10847 hypothetical protein; 42.1 1.3E+02 0.0028 21.9 6.3 50 36-85 73-127 (219)
113 PF11683 DUF3278: Protein of u 41.5 83 0.0018 21.3 4.9 15 71-85 100-114 (129)
114 PF11188 DUF2975: Protein of u 41.5 84 0.0018 20.2 4.7 17 57-73 117-133 (136)
115 PRK00343 ipk 4-diphosphocytidy 41.3 28 0.00061 26.3 2.7 27 57-83 205-231 (271)
116 cd04908 ACT_Bt0572_1 N-termina 41.3 20 0.00043 20.9 1.5 15 72-86 50-64 (66)
117 PF15168 TRIQK: Triple QxxK/R 40.7 27 0.00059 22.8 2.2 23 29-51 49-71 (79)
118 PLN00139 hypothetical protein; 40.7 23 0.00049 27.8 2.2 33 54-86 141-173 (320)
119 PRK14625 hypothetical protein; 40.6 22 0.00048 24.1 1.9 25 61-85 7-31 (109)
120 cd03027 GRX_DEP Glutaredoxin ( 40.5 27 0.00058 20.5 2.1 24 55-86 5-28 (73)
121 PLN03192 Voltage-dependent pot 40.5 2E+02 0.0043 25.0 8.0 48 35-85 281-330 (823)
122 TIGR00012 L29 ribosomal protei 40.2 32 0.0007 20.2 2.3 16 66-81 8-23 (55)
123 PRK00888 ftsB cell division pr 40.1 48 0.001 22.0 3.4 26 52-77 23-48 (105)
124 PRK12596 putative monovalent c 39.9 33 0.00071 24.6 2.8 22 1-22 1-22 (171)
125 PF13801 Metal_resist: Heavy-m 39.8 44 0.00096 20.6 3.1 20 63-82 87-106 (125)
126 COG1080 PtsA Phosphoenolpyruva 39.7 39 0.00085 29.2 3.6 27 61-87 396-422 (574)
127 PF08534 Redoxin: Redoxin; In 39.7 47 0.001 21.6 3.4 26 60-86 40-65 (146)
128 COG2962 RarD Predicted permeas 39.5 1.2E+02 0.0026 24.1 6.1 40 6-50 128-167 (293)
129 cd06577 PASTA_pknB PASTA domai 39.3 27 0.00058 18.8 1.8 18 70-87 8-25 (62)
130 cd06575 PASTA_Pbp2x-like_2 PAS 39.0 25 0.00053 18.7 1.6 17 70-86 8-24 (54)
131 PF12277 DUF3618: Protein of u 39.0 41 0.00088 19.4 2.6 17 65-81 5-21 (49)
132 PF04043 PMEI: Plant invertase 38.6 26 0.00057 22.8 2.0 28 56-83 73-102 (152)
133 PF04048 Sec8_exocyst: Sec8 ex 38.5 43 0.00094 23.0 3.1 29 55-83 78-106 (142)
134 PRK12585 putative monovalent c 38.4 42 0.0009 25.3 3.2 23 38-60 10-32 (197)
135 PRK09848 glucuronide transport 38.3 96 0.0021 23.9 5.3 33 40-74 411-443 (448)
136 PRK08307 stage III sporulation 38.2 41 0.0009 23.9 3.1 20 64-83 133-152 (171)
137 COG3347 Uncharacterized conser 38.1 41 0.00089 27.9 3.3 32 53-84 191-223 (404)
138 PF00831 Ribosomal_L29: Riboso 37.8 44 0.00095 19.8 2.7 17 65-81 9-25 (58)
139 PRK10638 glutaredoxin 3; Provi 37.4 29 0.00064 21.0 1.9 25 55-87 6-30 (83)
140 PF03929 PepSY_TM: PepSY-assoc 37.2 64 0.0014 16.7 3.3 17 1-17 1-17 (27)
141 PF09803 DUF2346: Uncharacteri 37.1 1.1E+02 0.0023 19.7 4.6 20 40-60 8-27 (80)
142 PF10704 DUF2508: Protein of u 37.0 42 0.00092 20.7 2.6 20 63-82 12-31 (71)
143 PRK14623 hypothetical protein; 37.0 24 0.00052 23.8 1.6 24 62-85 7-30 (106)
144 PF06196 DUF997: Protein of un 36.9 1.1E+02 0.0025 19.5 6.3 32 31-62 38-73 (80)
145 PRK14166 bifunctional 5,10-met 36.9 49 0.0011 25.9 3.5 27 59-85 4-30 (282)
146 PRK00306 50S ribosomal protein 36.4 39 0.00084 20.5 2.3 17 65-81 11-27 (66)
147 PF03650 MPC: Uncharacterised 36.3 1.5E+02 0.0032 20.6 7.2 52 26-78 67-118 (119)
148 PF10658 DUF2484: Protein of u 36.2 91 0.002 20.2 4.1 44 11-54 4-48 (77)
149 TIGR02181 GRX_bact Glutaredoxi 36.1 38 0.00082 20.0 2.3 24 55-86 3-26 (79)
150 PRK14610 4-diphosphocytidyl-2- 36.1 37 0.0008 25.7 2.7 26 57-82 210-235 (283)
151 PRK13694 hypothetical protein; 35.9 59 0.0013 21.4 3.2 27 60-86 23-49 (83)
152 PF15134 DUF4570: Domain of un 35.9 38 0.00082 23.3 2.4 18 66-83 55-72 (109)
153 PRK14464 ribosomal RNA large s 35.9 54 0.0012 26.2 3.6 15 58-72 253-267 (344)
154 smart00090 RIO RIO-like kinase 35.7 59 0.0013 23.8 3.6 35 53-87 192-226 (237)
155 PF03564 DUF1759: Protein of u 35.7 74 0.0016 21.0 3.9 29 60-88 90-118 (145)
156 TIGR00219 mreC rod shape-deter 35.3 2.1E+02 0.0045 22.0 6.8 48 33-80 43-90 (283)
157 cd00427 Ribosomal_L29_HIP Ribo 35.3 43 0.00093 19.7 2.3 17 65-81 8-24 (57)
158 cd03040 GST_N_mPGES2 GST_N fam 35.3 39 0.00084 19.7 2.2 25 55-87 4-28 (77)
159 TIGR02833 spore_III_AB stage I 35.2 49 0.0011 23.5 3.0 20 64-83 132-151 (170)
160 PRK10747 putative protoheme IX 35.1 1E+02 0.0022 24.1 5.0 11 1-11 1-11 (398)
161 PLN03085 nucleobase:cation sym 35.0 53 0.0011 25.2 3.3 32 50-81 129-160 (221)
162 cd03031 GRX_GRX_like Glutaredo 35.0 20 0.00044 25.2 1.0 12 57-68 15-26 (147)
163 PF02996 Prefoldin: Prefoldin 34.8 23 0.0005 22.8 1.2 31 51-81 65-95 (120)
164 PF10104 Brr6_like_C_C: Di-sul 34.8 1.2E+02 0.0026 20.9 4.9 43 40-84 13-59 (135)
165 PF07811 TadE: TadE-like prote 34.7 77 0.0017 16.9 3.3 26 33-58 9-34 (43)
166 PRK02463 OxaA-like protein pre 34.7 2.3E+02 0.0049 22.3 7.1 80 1-80 2-108 (307)
167 PF08510 PIG-P: PIG-P; InterP 34.7 1.4E+02 0.0031 20.1 5.2 32 27-58 40-72 (126)
168 COG3301 NrfD Formate-dependent 34.5 2E+02 0.0044 23.1 6.6 40 3-42 129-174 (305)
169 COG4327 Predicted membrane pro 34.4 59 0.0013 22.1 3.1 32 33-65 23-54 (101)
170 cd00890 Prefoldin Prefoldin is 34.0 37 0.00081 22.0 2.1 30 50-79 74-103 (129)
171 PF00959 Phage_lysozyme: Phage 34.0 51 0.0011 20.9 2.7 24 60-83 20-43 (110)
172 PF11373 DUF3175: Protein of u 33.9 68 0.0015 21.3 3.3 12 70-81 71-82 (86)
173 PF15603 Imm45: Immunity prote 33.7 37 0.00081 22.0 2.0 26 62-87 55-80 (82)
174 PRK13726 conjugal transfer pil 33.6 62 0.0014 23.7 3.4 25 61-85 101-125 (188)
175 PRK14182 bifunctional 5,10-met 33.5 57 0.0012 25.5 3.4 26 60-85 5-30 (282)
176 COG1894 NuoF NADH:ubiquinone o 33.4 39 0.00085 28.2 2.6 37 41-77 114-150 (424)
177 PRK12675 putative monovalent c 33.4 58 0.0013 21.9 3.0 24 38-61 4-27 (104)
178 PF10224 DUF2205: Predicted co 33.2 54 0.0012 21.2 2.7 22 60-81 13-34 (80)
179 PF15523 Toxin_44: Putative to 33.0 47 0.001 21.5 2.4 17 59-75 4-21 (84)
180 cd07241 Glo_EDI_BRP_like_3 Thi 32.8 44 0.00094 20.3 2.2 17 70-86 82-98 (125)
181 PF01277 Oleosin: Oleosin; In 32.8 40 0.00087 23.4 2.2 16 44-59 68-83 (118)
182 COG0698 RpiB Ribose 5-phosphat 32.8 27 0.00059 25.2 1.4 25 61-88 7-31 (151)
183 PF07278 DUF1441: Protein of u 32.6 57 0.0012 23.5 3.0 38 45-82 100-145 (152)
184 COG2178 Predicted RNA-binding 32.5 51 0.0011 25.0 2.9 26 54-80 153-179 (204)
185 COG1741 Pirin-related protein 32.4 39 0.00085 26.3 2.3 15 69-83 260-274 (276)
186 PRK13922 rod shape-determining 32.3 2.1E+02 0.0046 21.2 7.7 47 34-80 47-93 (276)
187 PF14029 DUF4244: Protein of u 32.3 1.2E+02 0.0026 18.5 4.0 33 38-70 20-52 (56)
188 PF05529 Bap31: B-cell recepto 32.2 61 0.0013 23.0 3.1 14 68-81 159-172 (192)
189 cd03403 Band_7_stomatin_like B 32.2 24 0.00053 24.8 1.1 35 54-88 99-134 (215)
190 PF08663 HalX: HalX domain; I 32.1 51 0.0011 20.7 2.4 22 61-82 34-55 (71)
191 PRK00587 hypothetical protein; 32.1 40 0.00086 22.5 2.0 27 59-85 4-30 (99)
192 PF09388 SpoOE-like: Spo0E lik 32.0 52 0.0011 18.4 2.2 15 67-81 1-15 (45)
193 cd07265 2_3_CTD_N N-terminal d 32.0 49 0.0011 20.5 2.4 17 70-86 73-89 (122)
194 COG1730 GIM5 Predicted prefold 32.0 42 0.0009 23.9 2.2 33 48-80 79-111 (145)
195 TIGR00154 ispE 4-diphosphocyti 31.8 46 0.001 25.3 2.6 28 57-84 215-242 (293)
196 PRK01356 hscB co-chaperone Hsc 31.7 46 0.00099 23.7 2.4 29 59-87 51-79 (166)
197 PRK14169 bifunctional 5,10-met 31.7 65 0.0014 25.1 3.4 26 60-85 5-30 (282)
198 PF01920 Prefoldin_2: Prefoldi 31.6 47 0.001 20.7 2.3 27 54-80 53-79 (106)
199 cd04886 ACT_ThrD-II-like C-ter 31.5 53 0.0011 18.1 2.3 17 70-86 55-71 (73)
200 PF13600 DUF4140: N-terminal d 31.5 67 0.0014 20.4 3.0 22 61-82 68-89 (104)
201 cd02066 GRX_family Glutaredoxi 31.5 47 0.001 18.2 2.0 24 55-86 4-27 (72)
202 cd03059 GST_N_SspA GST_N famil 31.4 48 0.001 18.8 2.1 25 55-87 3-27 (73)
203 PF02896 PEP-utilizers_C: PEP- 31.4 73 0.0016 24.8 3.7 30 58-87 144-173 (293)
204 PF08900 DUF1845: Domain of un 31.4 72 0.0016 23.7 3.5 24 64-87 74-99 (217)
205 PF00237 Ribosomal_L22: Riboso 31.3 80 0.0017 20.4 3.4 28 61-88 36-64 (105)
206 cd08344 MhqB_like_N N-terminal 31.2 46 0.001 20.5 2.2 18 70-87 66-83 (112)
207 cd03399 Band_7_flotillin Band_ 31.2 76 0.0017 20.7 3.3 42 47-88 66-108 (128)
208 PF08700 Vps51: Vps51/Vps67; 31.2 75 0.0016 19.3 3.1 20 62-81 25-44 (87)
209 cd08357 Glo_EDI_BRP_like_18 Th 31.2 47 0.001 20.3 2.2 18 70-87 76-93 (125)
210 COG5567 Predicted small peripl 31.1 61 0.0013 20.0 2.6 17 1-17 1-17 (58)
211 TIGR02797 exbB tonB-system ene 31.1 1.5E+02 0.0032 21.7 5.1 28 34-61 14-41 (211)
212 PRK12592 putative monovalent c 31.1 79 0.0017 22.0 3.4 25 37-61 11-35 (126)
213 cd02976 NrdH NrdH-redoxin (Nrd 30.7 56 0.0012 18.0 2.3 11 55-65 4-14 (73)
214 PF13669 Glyoxalase_4: Glyoxal 30.7 39 0.00085 21.1 1.8 17 70-86 77-93 (109)
215 cd04906 ACT_ThrD-I_1 First of 30.6 55 0.0012 20.2 2.4 18 69-86 52-69 (85)
216 PF12097 DUF3573: Protein of u 30.6 1.2E+02 0.0027 25.0 4.9 21 61-81 40-60 (383)
217 cd07242 Glo_EDI_BRP_like_6 Thi 30.5 50 0.0011 20.5 2.3 18 70-87 80-97 (128)
218 PRK12671 putative monovalent c 30.5 73 0.0016 22.1 3.2 25 37-61 15-39 (120)
219 cd04883 ACT_AcuB C-terminal AC 30.5 40 0.00087 19.3 1.7 13 74-86 56-68 (72)
220 PRK06231 F0F1 ATP synthase sub 30.5 2.2E+02 0.0047 20.8 8.2 21 2-22 6-26 (205)
221 PF06306 CgtA: Beta-1,4-N-acet 30.3 21 0.00045 29.0 0.5 24 49-72 111-134 (347)
222 CHL00154 rpl29 ribosomal prote 30.3 56 0.0012 20.3 2.3 16 65-80 14-29 (67)
223 COG3167 PilO Tfp pilus assembl 30.1 2.3E+02 0.0049 21.7 6.0 53 33-86 20-72 (211)
224 PF07332 DUF1469: Protein of u 30.1 1.6E+02 0.0034 19.0 8.2 14 63-76 106-119 (121)
225 PRK12587 putative monovalent c 30.0 70 0.0015 22.0 3.0 24 38-61 11-34 (118)
226 PRK12586 putative monovalent c 30.0 67 0.0015 22.9 3.0 25 37-61 12-36 (145)
227 cd07235 MRD Mitomycin C resist 29.9 62 0.0013 19.9 2.6 18 70-87 78-95 (122)
228 PF09351 DUF1993: Domain of un 29.9 43 0.00093 23.9 2.0 29 53-81 70-98 (162)
229 COG2886 Uncharacterized small 29.7 47 0.001 21.9 2.0 25 63-87 46-70 (88)
230 PF15361 RIC3: Resistance to i 29.5 2.1E+02 0.0045 20.3 6.3 49 32-80 83-148 (152)
231 PF14159 CAAD: CAAD domains of 29.5 1.6E+02 0.0035 19.0 6.8 59 11-79 26-88 (90)
232 PF02468 PsbN: Photosystem II 29.3 69 0.0015 18.6 2.5 19 39-57 7-25 (43)
233 cd07252 BphC1-RGP6_N_like N-te 29.3 50 0.0011 20.7 2.1 18 70-87 69-86 (120)
234 cd09013 BphC-JF8_N_like N-term 29.2 63 0.0014 20.1 2.5 17 70-86 74-90 (121)
235 PRK12338 hypothetical protein; 29.2 55 0.0012 26.0 2.7 19 70-88 297-315 (319)
236 KOG3801 Uncharacterized conser 29.2 56 0.0012 22.0 2.3 17 64-80 48-64 (94)
237 PRK14457 ribosomal RNA large s 29.1 85 0.0018 24.9 3.7 29 58-86 266-322 (345)
238 KOG0286 G-protein beta subunit 29.0 55 0.0012 26.6 2.7 18 63-80 9-26 (343)
239 cd03401 Band_7_prohibitin Band 29.0 64 0.0014 22.3 2.8 40 49-88 102-142 (196)
240 PF13382 Adenine_deam_C: Adeni 28.9 80 0.0017 22.8 3.3 26 63-88 115-140 (171)
241 KOG3799 Rab3 effector RIM1 and 28.9 79 0.0017 23.1 3.2 25 63-87 41-65 (169)
242 PHA02277 hypothetical protein 28.9 94 0.002 22.3 3.6 34 50-83 98-132 (150)
243 PRK12672 putative monovalent c 28.7 93 0.002 21.2 3.4 25 37-61 7-31 (118)
244 PRK14462 ribosomal RNA large s 28.6 91 0.002 25.0 3.8 13 57-69 273-285 (356)
245 PF11221 Med21: Subunit 21 of 28.5 86 0.0019 21.6 3.3 17 65-81 106-122 (144)
246 cd08351 ChaP_like ChaP, an enz 28.4 56 0.0012 20.5 2.2 17 70-86 69-85 (123)
247 PRK06553 lipid A biosynthesis 28.3 2.6E+02 0.0055 21.2 6.1 7 58-64 72-78 (308)
248 PRK12674 putative monovalent c 28.2 82 0.0018 20.7 3.0 25 37-61 7-31 (99)
249 cd03041 GST_N_2GST_N GST_N fam 28.1 51 0.0011 19.5 1.9 24 55-86 4-27 (77)
250 cd08353 Glo_EDI_BRP_like_7 Thi 28.1 36 0.00079 21.8 1.3 18 70-87 96-113 (142)
251 PRK14184 bifunctional 5,10-met 28.0 81 0.0018 24.7 3.4 26 60-85 5-31 (286)
252 cd03017 PRX_BCP Peroxiredoxin 28.0 77 0.0017 20.2 2.9 27 59-86 34-60 (140)
253 COG2991 Uncharacterized protei 27.6 1.4E+02 0.0031 19.3 4.0 23 55-77 41-63 (77)
254 PF12955 DUF3844: Domain of un 27.4 76 0.0016 21.5 2.8 22 34-55 65-86 (103)
255 PF05852 DUF848: Gammaherpesvi 27.3 78 0.0017 22.7 3.0 18 63-80 89-106 (146)
256 PF05872 DUF853: Bacterial pro 27.3 60 0.0013 27.7 2.7 26 58-86 268-293 (502)
257 PF09793 AD: Anticodon-binding 27.2 1.2E+02 0.0027 19.3 3.7 27 60-86 6-32 (91)
258 PRK12670 putative monovalent c 27.2 87 0.0019 20.7 3.0 24 38-61 7-30 (99)
259 PRK00294 hscB co-chaperone Hsc 27.1 61 0.0013 23.4 2.4 28 60-87 56-83 (173)
260 PF02060 ISK_Channel: Slow vol 27.1 45 0.00098 23.6 1.7 24 36-59 44-67 (129)
261 TIGR02796 tolQ TolQ protein. T 27.0 84 0.0018 23.1 3.2 38 35-72 15-52 (215)
262 cd03030 GRX_SH3BGR Glutaredoxi 26.9 69 0.0015 20.7 2.4 22 66-87 13-34 (92)
263 PRK13183 psbN photosystem II r 26.9 73 0.0016 18.8 2.3 21 38-58 9-29 (46)
264 PRK14175 bifunctional 5,10-met 26.9 86 0.0019 24.5 3.4 27 59-85 6-32 (286)
265 cd08359 Glo_EDI_BRP_like_22 Th 26.8 38 0.00083 20.7 1.2 16 71-86 76-91 (119)
266 cd07255 Glo_EDI_BRP_like_12 Th 26.7 72 0.0016 19.6 2.5 18 70-87 76-93 (125)
267 PF14257 DUF4349: Domain of un 26.7 1.2E+02 0.0026 22.5 4.0 12 34-45 246-257 (262)
268 PF13858 DUF4199: Protein of u 26.6 1.5E+02 0.0033 19.9 4.2 33 42-74 70-106 (163)
269 TIGR03826 YvyF flagellar opero 26.6 88 0.0019 22.0 3.1 23 60-82 20-42 (137)
270 PRK14549 50S ribosomal protein 26.4 71 0.0015 19.7 2.3 17 65-81 14-30 (69)
271 COG0107 HisF Imidazoleglycerol 26.4 73 0.0016 24.9 2.9 29 49-86 225-253 (256)
272 TIGR01300 CPA3_mnhG_phaG monov 26.3 75 0.0016 20.9 2.6 22 40-61 2-23 (97)
273 PRK14194 bifunctional 5,10-met 26.3 88 0.0019 24.7 3.4 27 59-85 7-33 (301)
274 PF04995 CcmD: Heme exporter p 26.3 1.3E+02 0.0028 16.9 3.7 35 38-72 6-40 (46)
275 PRK08378 hypothetical protein; 26.2 1.8E+02 0.0038 19.3 4.3 46 6-61 8-54 (93)
276 COG1659 Uncharacterized protei 26.2 55 0.0012 25.6 2.2 44 40-85 119-167 (267)
277 PF14788 EF-hand_10: EF hand; 26.2 40 0.00086 20.2 1.1 16 73-88 5-20 (51)
278 TIGR00540 hemY_coli hemY prote 26.2 2.9E+02 0.0064 21.5 6.3 8 1-8 1-8 (409)
279 COG5085 Predicted membrane pro 26.1 2.4E+02 0.0052 21.8 5.6 41 40-82 94-138 (230)
280 KOG4503 Uncharacterized conser 26.1 2.4E+02 0.0052 21.8 5.6 41 40-82 94-138 (230)
281 cd06576 PASTA_Pbp2x-like_1 PAS 26.1 57 0.0012 17.4 1.7 17 70-86 8-24 (55)
282 cd00632 Prefoldin_beta Prefold 26.1 1.6E+02 0.0034 19.0 4.1 28 54-81 54-81 (105)
283 PF07061 Swi5: Swi5; InterPro 25.9 1.1E+02 0.0025 19.6 3.3 34 55-88 45-83 (83)
284 PRK14170 bifunctional 5,10-met 25.9 92 0.002 24.4 3.4 26 60-85 6-31 (284)
285 cd07244 FosA FosA, a Fosfomyci 25.8 79 0.0017 19.7 2.5 18 70-87 68-85 (121)
286 PF09969 DUF2203: Uncharacteri 25.8 1.1E+02 0.0024 20.9 3.4 32 57-88 44-75 (120)
287 KOG1071 Mitochondrial translat 25.8 21 0.00045 28.9 -0.2 30 56-85 59-88 (340)
288 smart00244 PHB prohibitin homo 25.8 62 0.0013 21.1 2.1 24 65-88 116-140 (160)
289 PF05615 THOC7: Tho complex su 25.6 72 0.0016 21.5 2.4 14 67-80 99-112 (139)
290 PRK08311 putative RNA polymera 25.6 68 0.0015 24.0 2.5 25 64-88 126-150 (237)
291 TIGR02190 GlrX-dom Glutaredoxi 25.5 55 0.0012 19.6 1.7 24 56-87 13-36 (79)
292 PRK00461 rpmC 50S ribosomal pr 25.4 73 0.0016 20.8 2.3 17 65-81 10-26 (87)
293 PRK14190 bifunctional 5,10-met 25.3 97 0.0021 24.2 3.4 27 59-85 6-32 (284)
294 TIGR00714 hscB Fe-S protein as 25.3 62 0.0014 22.7 2.2 28 60-87 41-68 (157)
295 PF05309 TraE: TraE protein; 25.1 1.1E+02 0.0023 21.8 3.4 50 36-85 74-125 (187)
296 smart00543 MIF4G Middle domain 25.1 2E+02 0.0044 19.2 4.6 39 39-78 138-176 (200)
297 COG0320 LipA Lipoate synthase 25.1 52 0.0011 26.4 1.9 20 67-86 225-244 (306)
298 cd02970 PRX_like2 Peroxiredoxi 25.1 1E+02 0.0023 19.6 3.1 27 59-86 34-60 (149)
299 PRK10957 iron-enterobactin tra 25.0 99 0.0021 23.0 3.3 27 56-82 158-184 (317)
300 PRK14454 ribosomal RNA large s 24.9 1.2E+02 0.0025 24.0 3.8 17 70-86 302-318 (342)
301 PRK14612 4-diphosphocytidyl-2- 24.8 78 0.0017 23.6 2.7 28 57-84 205-232 (276)
302 PRK12452 cardiolipin synthetas 24.8 47 0.001 27.5 1.7 21 57-77 144-164 (509)
303 PRK14616 4-diphosphocytidyl-2- 24.7 83 0.0018 23.6 2.9 28 57-84 214-241 (287)
304 TIGR00048 radical SAM enzyme, 24.7 1.1E+02 0.0024 24.2 3.7 17 70-86 309-325 (355)
305 CHL00020 psbN photosystem II p 24.5 68 0.0015 18.7 1.8 21 38-58 6-26 (43)
306 PLN03234 cytochrome P450 83B1; 24.5 91 0.002 24.6 3.2 29 48-76 305-333 (499)
307 smart00740 PASTA PASTA domain. 24.5 64 0.0014 17.6 1.8 16 71-86 14-29 (66)
308 TIGR01597 PYST-B Plasmodium yo 24.4 61 0.0013 25.3 2.1 19 65-83 115-133 (255)
309 TIGR02920 acc_sec_Y2 accessory 24.4 1.3E+02 0.0028 24.2 4.1 34 36-70 275-308 (395)
310 PF00639 Rotamase: PPIC-type P 24.4 70 0.0015 19.9 2.1 31 56-86 4-34 (95)
311 PF02866 Ldh_1_C: lactate/mala 24.4 86 0.0019 21.7 2.7 16 63-78 158-173 (174)
312 COG0711 AtpF F0F1-type ATP syn 24.3 99 0.0021 21.7 3.0 20 63-82 106-125 (161)
313 PRK14189 bifunctional 5,10-met 24.3 1E+02 0.0022 24.1 3.4 26 60-85 7-32 (285)
314 PF05472 Ter: DNA replication 24.3 65 0.0014 24.9 2.3 28 54-81 86-114 (290)
315 cd00636 TroA-like Helical back 24.3 1.2E+02 0.0026 18.4 3.2 23 61-83 113-135 (148)
316 PRK14167 bifunctional 5,10-met 24.2 1E+02 0.0022 24.2 3.4 26 60-85 6-31 (297)
317 PF05680 ATP-synt_E: ATP synth 24.1 2.1E+02 0.0045 18.5 4.8 13 70-82 50-62 (86)
318 PRK00293 dipZ thiol:disulfide 24.0 1.6E+02 0.0035 24.7 4.7 21 1-21 360-380 (571)
319 PF08915 tRNA-Thr_ED: Archaea- 24.0 89 0.0019 22.2 2.7 23 61-86 89-111 (138)
320 PF02630 SCO1-SenC: SCO1/SenC; 24.0 1E+02 0.0022 21.5 3.0 30 56-85 59-88 (174)
321 COG0201 SecY Preprotein transl 24.0 1.4E+02 0.003 24.8 4.2 37 33-70 310-346 (436)
322 cd03029 GRX_hybridPRX5 Glutare 24.0 53 0.0011 19.1 1.4 25 55-87 5-29 (72)
323 cd07240 ED_TypeI_classII_N N-t 23.9 85 0.0018 18.9 2.4 17 70-86 69-85 (117)
324 cd00859 HisRS_anticodon HisRS 23.9 93 0.002 17.8 2.5 17 71-87 16-32 (91)
325 PF07889 DUF1664: Protein of u 23.9 34 0.00073 23.9 0.5 27 60-86 79-105 (126)
326 cd01144 BtuF Cobalamin binding 23.8 1.1E+02 0.0024 21.6 3.2 25 58-82 104-128 (245)
327 PRK13723 conjugal transfer pil 23.8 1.8E+02 0.004 24.3 4.9 31 51-81 379-409 (451)
328 cd01989 STK_N The N-terminal d 23.8 1.2E+02 0.0025 19.5 3.1 24 63-86 58-81 (146)
329 COG4711 Predicted membrane pro 23.7 2.4E+02 0.0051 21.7 5.1 45 1-45 121-177 (217)
330 cd08361 PpCmtC_N N-terminal do 23.7 64 0.0014 20.5 1.9 17 70-86 71-87 (124)
331 TIGR03064 sortase_srtB sortase 23.7 1.6E+02 0.0036 22.1 4.3 38 38-75 8-45 (232)
332 PF08951 EntA_Immun: Enterocin 23.7 1.4E+02 0.003 17.3 3.2 32 51-83 9-40 (75)
333 PRK15071 lipopolysaccharide AB 23.7 2.1E+02 0.0045 21.8 4.9 26 24-49 328-353 (356)
334 PF06698 DUF1192: Protein of u 23.4 62 0.0013 19.8 1.6 26 58-83 23-48 (59)
335 COG3523 IcmF Type VI protein s 23.3 6.4E+02 0.014 23.9 8.8 21 61-81 91-111 (1188)
336 TIGR02147 Fsuc_second hypothet 23.3 1E+02 0.0023 23.7 3.2 29 53-81 220-248 (271)
337 cd08346 PcpA_N_like N-terminal 23.2 92 0.002 18.8 2.4 18 70-87 85-102 (126)
338 PF12729 4HB_MCP_1: Four helix 23.2 2.1E+02 0.0045 18.2 9.1 40 40-80 53-92 (181)
339 TIGR00178 monomer_idh isocitra 23.1 1.2E+02 0.0026 27.0 3.8 35 54-88 48-109 (741)
340 cd03045 GST_N_Delta_Epsilon GS 23.0 71 0.0015 18.2 1.8 25 55-87 3-27 (74)
341 PRK14187 bifunctional 5,10-met 23.0 1.1E+02 0.0025 24.0 3.4 26 60-85 6-32 (294)
342 PRK14180 bifunctional 5,10-met 23.0 1.1E+02 0.0025 23.8 3.4 28 58-85 3-31 (282)
343 smart00750 KIND kinase non-cat 23.0 99 0.0022 20.1 2.7 17 43-59 85-101 (176)
344 cd00584 Prefoldin_alpha Prefol 22.9 79 0.0017 20.8 2.2 30 50-79 74-103 (129)
345 PF03480 SBP_bac_7: Bacterial 22.9 1.1E+02 0.0024 22.5 3.3 23 64-86 238-260 (286)
346 TIGR01558 sm_term_P27 phage te 22.7 1.2E+02 0.0025 19.9 3.0 25 63-87 36-60 (116)
347 PRK14468 ribosomal RNA large s 22.7 1.3E+02 0.0028 23.7 3.7 17 70-86 297-313 (343)
348 PLN02545 3-hydroxybutyryl-CoA 22.7 1.3E+02 0.0027 22.4 3.5 36 48-83 23-58 (295)
349 PLN02940 riboflavin kinase 22.5 89 0.0019 24.7 2.8 26 57-82 341-366 (382)
350 PF11823 DUF3343: Protein of u 22.5 68 0.0015 19.4 1.7 18 70-87 50-67 (73)
351 PRK14467 ribosomal RNA large s 22.5 1.3E+02 0.0029 23.8 3.8 17 70-86 305-321 (348)
352 PF13571 DUF4133: Domain of un 22.4 2E+02 0.0044 19.3 4.1 32 35-66 41-72 (96)
353 PF04270 Strep_his_triad: Stre 22.4 78 0.0017 19.0 1.9 13 70-82 41-53 (53)
354 PRK06286 putative monovalent c 22.4 1.5E+02 0.0033 19.6 3.4 25 36-60 8-32 (91)
355 COG4120 ABC-type uncharacteriz 22.4 48 0.001 26.4 1.2 21 37-61 15-35 (293)
356 PTZ00100 DnaJ chaperone protei 22.3 83 0.0018 21.6 2.3 14 67-80 102-115 (116)
357 cd02971 PRX_family Peroxiredox 22.3 95 0.0021 19.7 2.5 26 60-86 34-59 (140)
358 PRK14193 bifunctional 5,10-met 22.3 1.2E+02 0.0026 23.7 3.4 26 60-85 7-32 (284)
359 KOG0559 Dihydrolipoamide succi 22.3 94 0.002 26.0 2.9 31 55-87 254-285 (457)
360 PF04937 DUF659: Protein of un 22.3 1.1E+02 0.0024 21.4 3.0 25 62-86 12-36 (153)
361 cd03408 Band_7_5 A subgroup of 22.2 81 0.0017 21.9 2.2 34 55-88 151-187 (207)
362 CHL00198 accA acetyl-CoA carbo 22.1 65 0.0014 25.8 1.9 30 58-87 8-37 (322)
363 PF06103 DUF948: Bacterial pro 22.0 2.1E+02 0.0045 17.7 4.7 39 37-78 10-48 (90)
364 cd06080 MUM1_like Mutated mela 22.0 1.4E+02 0.0031 19.1 3.2 31 50-81 44-75 (80)
365 PF01851 PC_rep: Proteasome/cy 22.0 83 0.0018 16.8 1.8 27 49-75 2-29 (35)
366 TIGR02159 PA_CoA_Oxy4 phenylac 21.9 68 0.0015 22.6 1.8 22 56-78 33-54 (146)
367 PLN02364 L-ascorbate peroxidas 21.8 78 0.0017 24.2 2.2 23 59-81 3-25 (250)
368 PRK14615 4-diphosphocytidyl-2- 21.8 91 0.002 23.8 2.6 28 57-84 228-255 (296)
369 PRK14147 heat shock protein Gr 21.8 87 0.0019 22.6 2.4 14 66-79 28-41 (172)
370 PF08621 RPAP1_N: RPAP1-like, 21.8 91 0.002 18.3 2.1 12 70-81 18-29 (49)
371 COG3105 Uncharacterized protei 21.7 3.1E+02 0.0068 19.6 6.2 46 36-81 6-52 (138)
372 cd07264 Glo_EDI_BRP_like_15 Th 21.7 50 0.0011 20.3 1.0 17 70-86 80-96 (125)
373 PRK15487 O-antigen ligase RfaL 21.6 2.1E+02 0.0045 23.0 4.7 22 1-22 30-51 (400)
374 PF03334 PhaG_MnhG_YufB: Na+/H 21.6 77 0.0017 20.0 1.8 20 41-60 2-21 (81)
375 PRK14872 rod shape-determining 21.5 1.2E+02 0.0026 24.5 3.3 23 59-81 60-82 (337)
376 cd02969 PRX_like1 Peroxiredoxi 21.5 98 0.0021 20.9 2.5 28 58-86 34-61 (171)
377 PLN02394 trans-cinnamate 4-mon 21.5 1E+02 0.0022 24.4 2.9 28 49-76 311-338 (503)
378 COG3883 Uncharacterized protei 21.5 1.1E+02 0.0024 24.0 3.0 21 62-82 79-99 (265)
379 PF09450 DUF2019: Domain of un 21.4 2.7E+02 0.0059 18.9 5.0 39 45-83 7-45 (106)
380 PF09592 DUF2031: Protein of u 21.4 75 0.0016 24.5 2.1 19 65-83 114-132 (228)
381 PF06037 DUF922: Bacterial pro 21.4 1E+02 0.0022 21.9 2.6 42 46-87 105-146 (161)
382 cd03060 GST_N_Omega_like GST_N 21.4 93 0.002 17.9 2.1 25 55-87 3-27 (71)
383 cd03569 VHS_Hrs_Vps27p VHS dom 21.4 92 0.002 21.5 2.4 18 70-87 123-140 (142)
384 COG2815 Uncharacterized protei 21.4 34 0.00074 26.9 0.2 18 70-87 34-51 (303)
385 PF01230 HIT: HIT domain; Int 21.3 1.6E+02 0.0036 18.1 3.4 26 56-81 38-64 (98)
386 cd08352 Glo_EDI_BRP_like_1 Thi 21.3 75 0.0016 19.1 1.7 16 72-87 83-98 (125)
387 cd00635 PLPDE_III_YBL036c_like 21.3 1.6E+02 0.0035 21.0 3.7 27 60-86 165-192 (222)
388 cd08345 Fosfomycin_RP Fosfomyc 21.3 1.1E+02 0.0025 18.3 2.6 18 70-87 66-83 (113)
389 PF06780 Erp_C: Erp protein C- 21.3 1.2E+02 0.0025 22.0 2.9 20 63-82 68-87 (146)
390 PRK14186 bifunctional 5,10-met 21.2 1.3E+02 0.0028 23.7 3.4 26 60-85 6-32 (297)
391 PRK05627 bifunctional riboflav 21.1 1.1E+02 0.0025 23.7 3.1 25 56-80 280-304 (305)
392 PF05119 Terminase_4: Phage te 21.1 1.7E+02 0.0036 18.1 3.4 24 63-86 27-50 (100)
393 PLN03112 cytochrome P450 famil 21.1 1.1E+02 0.0023 24.4 3.0 28 49-76 314-341 (514)
394 COG3580 Uncharacterized protei 21.0 71 0.0015 26.1 1.9 28 56-83 163-190 (351)
395 PRK14466 ribosomal RNA large s 20.9 1.6E+02 0.0034 23.7 3.9 12 58-69 261-272 (345)
396 PF12644 DUF3782: Protein of u 20.9 1.1E+02 0.0024 17.8 2.4 19 64-82 2-20 (64)
397 PF12732 YtxH: YtxH-like prote 20.9 2.1E+02 0.0045 17.3 4.1 20 62-81 21-40 (74)
398 PF13706 PepSY_TM_3: PepSY-ass 20.8 1.1E+02 0.0024 16.5 2.1 13 1-13 4-16 (37)
399 cd02968 SCO SCO (an acronym fo 20.7 69 0.0015 20.5 1.5 30 54-83 25-56 (142)
400 PRK10557 hypothetical protein; 20.7 3.4E+02 0.0073 19.6 5.4 14 72-85 56-69 (192)
401 COG0082 AroC Chorismate syntha 20.7 85 0.0018 25.8 2.3 21 62-82 184-204 (369)
402 COG5420 Uncharacterized conser 20.7 1.2E+02 0.0026 19.3 2.6 20 62-81 47-66 (71)
403 PF07485 DUF1529: Domain of Un 20.6 82 0.0018 21.7 2.0 21 66-86 64-84 (123)
404 cd00735 bacteriophage_T4-like_ 20.6 1.4E+02 0.003 21.3 3.2 20 62-81 63-82 (164)
405 PRK14609 4-diphosphocytidyl-2- 20.6 1E+02 0.0022 23.2 2.6 28 57-84 207-234 (269)
406 COG4274 Uncharacterized conser 20.5 1.2E+02 0.0027 20.7 2.8 29 59-87 16-47 (104)
407 cd01143 YvrC Periplasmic bindi 20.5 1.5E+02 0.0032 19.9 3.2 23 59-81 108-130 (195)
408 COG5000 NtrY Signal transducti 20.5 67 0.0015 28.5 1.8 27 56-82 342-368 (712)
409 PRK14613 4-diphosphocytidyl-2- 20.4 96 0.0021 23.7 2.5 28 57-84 227-254 (297)
410 PF04388 Hamartin: Hamartin pr 20.4 2.5E+02 0.0055 24.3 5.2 18 42-59 180-197 (668)
411 PF13670 PepSY_2: Peptidase pr 20.4 59 0.0013 20.0 1.1 29 59-87 18-46 (83)
412 PF02994 Transposase_22: L1 tr 20.4 1E+02 0.0023 24.5 2.8 51 36-86 260-313 (370)
413 PF02780 Transketolase_C: Tran 20.4 80 0.0017 20.4 1.8 17 70-86 22-38 (124)
414 PF11576 DUF3236: Protein of u 20.3 76 0.0016 23.1 1.8 22 56-77 16-37 (154)
415 PRK10527 hypothetical protein; 20.3 3E+02 0.0065 18.9 5.0 15 24-43 23-37 (125)
416 PRK11478 putative lyase; Provi 20.3 69 0.0015 19.9 1.4 16 71-86 85-100 (129)
417 cd03567 VHS_GGA VHS domain fam 20.2 84 0.0018 21.8 2.0 21 57-85 117-137 (139)
418 PRK14188 bifunctional 5,10-met 20.2 1.3E+02 0.0029 23.5 3.3 26 60-85 6-32 (296)
419 PF06757 Ins_allergen_rp: Inse 20.2 74 0.0016 22.5 1.7 18 70-87 156-173 (179)
420 COG3737 Uncharacterized conser 20.2 75 0.0016 22.5 1.7 38 50-87 44-100 (127)
421 PF01340 MetJ: Met Apo-repress 20.2 91 0.002 21.2 2.0 16 73-88 86-101 (104)
422 PRK14619 NAD(P)H-dependent gly 20.1 2.3E+02 0.0049 21.3 4.5 36 51-86 234-275 (308)
423 PF00903 Glyoxalase: Glyoxalas 20.1 89 0.0019 18.7 1.9 17 70-86 85-101 (128)
424 PF15071 TMEM220: Transmembran 20.1 1.9E+02 0.004 19.1 3.5 11 69-79 78-88 (104)
425 PRK05724 acetyl-CoA carboxylas 20.1 70 0.0015 25.5 1.7 31 57-87 4-34 (319)
426 cd07238 Glo_EDI_BRP_like_5 Thi 20.0 68 0.0015 19.5 1.4 16 71-86 67-82 (112)
427 cd08356 Glo_EDI_BRP_like_17 Th 20.0 85 0.0018 19.6 1.8 15 71-85 65-79 (113)
No 1
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=100.00 E-value=9.4e-44 Score=235.33 Aligned_cols=86 Identities=42% Similarity=0.772 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccC-c----cccchhHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVAITALWFGLLQTSVI-P----RSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEA 75 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~w~~l~~~~l~-p----~~~~~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eA 75 (88)
|||++||++.+++++++|+++++..+. | ++++|++|+|++++|||||+++|||||+|||||||||+|||+||+||
T Consensus 1 Mtr~~~~l~~~~~l~~~w~~l~~~~~~~~~~~~~~ii~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eA 80 (91)
T PF08285_consen 1 MTRLQQWLSALLLLSALWLALLLGLLPLPPEPQQEIIPYLPFYALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEA 80 (91)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHccCCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999964442 2 24689999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcc
Q 034652 76 KEYLERKGIDV 86 (88)
Q Consensus 76 k~dL~~kG~~~ 86 (88)
|+|||+||+++
T Consensus 81 K~dLr~kGv~~ 91 (91)
T PF08285_consen 81 KADLRKKGVDV 91 (91)
T ss_pred HHHHHHcCCCC
Confidence 99999999986
No 2
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=7.3e-30 Score=169.10 Aligned_cols=86 Identities=30% Similarity=0.531 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHh-cccCccc---cchhHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVAITALWFGLLQ-TSVIPRS---HTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAK 76 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~w~~l~~-~~l~p~~---~~~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk 76 (88)
|++.-.|+....+..++|..... ...+|++ ..++-|+|+++++|||+++++||||+||||||||+.|||+||+|||
T Consensus 6 ~t~~ah~~~~~~V~l~~~~~vt~~l~~Leeplscl~~y~P~~~~l~~G~Ya~~tv~Y~VATfnDc~eA~veL~~~IkEAr 85 (95)
T KOG4841|consen 6 MTKLAHWLWGLAVLLSTWVAVTTGLLGLEEPLSCLEVYWPLYLLLSAGCYALGTVGYRVATFNDCEEAAVELQSQIKEAR 85 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCcccHHHHHhhhHHHHHHHHHhHhhhhheeeeeccCCcHHHHHHHHHHHHHHH
Confidence 44455555666666677777652 2224432 4589999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcc
Q 034652 77 EYLERKGIDV 86 (88)
Q Consensus 77 ~dL~~kG~~~ 86 (88)
+|||+||+++
T Consensus 86 ~~L~rkg~ri 95 (95)
T KOG4841|consen 86 ADLARKGLRI 95 (95)
T ss_pred HHHHHccCCC
Confidence 9999999875
No 3
>PRK11677 hypothetical protein; Provisional
Probab=93.33 E-value=0.35 Score=34.07 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHHHHHHh
Q 034652 38 YFIVSLGCYGLLMVGIGLMYFPTCP-QEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tFnDcp-eA~~eL~~eI~eAk~dL~~ 81 (88)
|.+.+.|.-..+.|||-+.+|-+.. ....+|++|.+++|.+|.+
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~ 47 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEE 47 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 5666677777888999999985544 6889999999999999854
No 4
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=92.25 E-value=1.9 Score=30.95 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034652 64 EALLLQQDIKEAKEYLER 81 (88)
Q Consensus 64 A~~eL~~eI~eAk~dL~~ 81 (88)
.++..++.++||++.+++
T Consensus 69 e~~~~~~~l~ea~~~i~~ 86 (199)
T PF10112_consen 69 EYEYIREILEEAKEKIRR 86 (199)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356678889999988875
No 5
>PF14138 COX16: Cytochrome c oxidase assembly protein COX16
Probab=91.56 E-value=0.14 Score=33.05 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Q 034652 35 LPIYFIVSLGCYGLLMVGIGLMYFPT 60 (88)
Q Consensus 35 lP~~~lv~fG~Ysl~~vgy~v~tFnD 60 (88)
+|+.++++.|+|.|....-+=..+.|
T Consensus 5 lPf~~liV~GS~gL~~ftq~Rye~~d 30 (80)
T PF14138_consen 5 LPFLLLIVGGSFGLSEFTQIRYERRD 30 (80)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 79999999999999887766666655
No 6
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=90.90 E-value=1 Score=26.83 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc---CCchHHHHHHHHHHHHHHHHHHh
Q 034652 35 LPIYFIVSLGCYGLLMVGIGLMYF---PTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 35 lP~~~lv~fG~Ysl~~vgy~v~tF---nDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
+|++.++ ++++.+|.+.-.+++. --..-+.+.+++|+++.++++.+
T Consensus 18 ~pl~l~i-l~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 18 LPLGLLI-LIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555433 3333333333333333 33467778888888888887764
No 7
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=89.61 E-value=0.23 Score=30.09 Aligned_cols=40 Identities=25% Similarity=0.123 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHH
Q 034652 41 VSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 41 v~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~ 80 (88)
+++.++.+..+.++..+..+.....++|+++|++.++.-+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~i~~l~~e~~ 41 (80)
T PF04977_consen 2 LLFLVIFLVFGISGYSRYYQLNQEIAELQKEIEELKKENE 41 (80)
T ss_pred eeehhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999999999999999999888776543
No 8
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=89.40 E-value=1.6 Score=30.51 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcc---CCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652 34 LLPIYFIVSLGCYGLLMVGIGLMYF---PTCPQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 34 ~lP~~~lv~fG~Ysl~~vgy~v~tF---nDcpeA~~eL~~eI~eAk~dL~~kG~ 84 (88)
.+|++.++.+-+-..+.+.--+-.+ ++ .+.+++.++++++..+.++++|=
T Consensus 12 ~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~-~~~~~~~~~~~~~~~~~l~~~~~ 64 (168)
T PF01956_consen 12 LLPITIVVFLIAILRGLISELLQKFLIDRK-MDKYQKRMKEFQKRYRELRKNGD 64 (168)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHHHHHHHcCC
Confidence 5688655554444444433333333 45 69999999999999999998874
No 9
>COG5664 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=0.94 Score=33.98 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=37.0
Q ss_pred HHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 48 LLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 48 l~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
-++.|.+|..=+.|-..-.|+|++|.+--+.-|+||.|||
T Consensus 141 a~t~GL~vanDPkC~K~R~e~~~rl~~is~~qrqk~rdFD 180 (201)
T COG5664 141 AATTGLRVANDPKCRKIRRELQKRLGAISAEQRQKGRDFD 180 (201)
T ss_pred HHhcccccCCChhHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4678889998888999999999999999999999999998
No 10
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=85.34 E-value=2.7 Score=28.81 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhccCCch-HHHHHHHHHHHHHHHHHHhc
Q 034652 45 CYGLLMVGIGLMYFPTCP-QEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 45 ~Ysl~~vgy~v~tFnDcp-eA~~eL~~eI~eAk~dL~~k 82 (88)
.-..+.|||-+.+|..-. ....+|++|++++|.+|.+-
T Consensus 6 lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~y 44 (128)
T PF06295_consen 6 LVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQY 44 (128)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 334456777777665544 44579999999999998753
No 11
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=82.31 E-value=7.2 Score=29.41 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccCccccchhHHHHHHHHHHHHHHHHHHH-----hhhc------cCCchH
Q 034652 1 MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGI-----GLMY------FPTCPQ 63 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~w~~l~~~~l~p~~~~~~lP~~~lv~fG~Ysl~~vgy-----~v~t------FnDcpe 63 (88)
|||..+-+...+...++|..... +| .+|.+....+|-.....+|+ .++. |+|.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l---~~-----~~p~~~~~~~~~~l~~~~~~l~~~r~v~~~NL~~~fPe~~~ 66 (290)
T PRK06628 1 MKKFLKKLRYLIEYFIVVIFLKV---IG-----IFGVDKAADICSFIARKVGILFAVNKIARRNIKAVFGDMCD 66 (290)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH---HH-----hCChHHHHHHHHHHHHHhccchhHHHHHHHHHHHHCCCCCH
Confidence 88888877666666666643322 23 67777777777666666665 3433 888775
No 12
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=80.37 E-value=1.9 Score=26.50 Aligned_cols=19 Identities=47% Similarity=0.700 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcCCccC
Q 034652 69 QQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 69 ~~eI~eAk~dL~~kG~~~d 87 (88)
+|-+-|||+.|.++|++++
T Consensus 11 MK~lPEak~~L~k~GIeLs 29 (56)
T PF10815_consen 11 MKYLPEAKEELDKKGIELS 29 (56)
T ss_pred HHHhHHHHHHHHHcCccCC
Confidence 4667899999999999875
No 13
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=79.59 E-value=8.2 Score=23.76 Aligned_cols=41 Identities=12% Similarity=-0.029 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHH
Q 034652 38 YFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEY 78 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~d 78 (88)
.+++.+.+++...+.+.-....+-......+++|+++.+++
T Consensus 6 ~~l~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~e 46 (85)
T TIGR02209 6 VLLLLAILVSAISVVSAQHQTRQLNNELQKLQLEIDKLQKE 46 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666667777777777777666554
No 14
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=79.28 E-value=5.3 Score=30.48 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-cccCccccchhHHHHHHHHHHHHHHHH
Q 034652 5 VKILTLLVAITALWFGLLQ-TSVIPRSHTGLLPIYFIVSLGCYGLLM 50 (88)
Q Consensus 5 ~~~l~~~~~l~~~w~~l~~-~~l~p~~~~~~lP~~~lv~fG~Ysl~~ 50 (88)
.|.++++++...+|++... +.++|.+.-+.||-.++...|.-+++.
T Consensus 162 ~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lal 208 (226)
T COG4858 162 WKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILAL 208 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHH
Confidence 4678888999999999874 677898888889888888888776653
No 15
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=77.77 E-value=5.7 Score=30.19 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhccCCch------------HHHHHHHHHHHHHHHHHHh
Q 034652 32 TGLLPIYFIVSLGCYGLLMVGIGLMYFPTCP------------QEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 32 ~~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcp------------eA~~eL~~eI~eAk~dL~~ 81 (88)
-..+|-|-+.+|=.=.++.++|-| -|+--| .-..|+++|++++++...+
T Consensus 23 ~n~~P~ww~~~f~~~i~~~~~y~~-~yp~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 83 (285)
T TIGR00782 23 DNPLPRWWLWTFYATIVWGFGYLV-AYPAWPLVSGATKGLLGWSSRSQVEEEIKKFNEKNAA 83 (285)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHH-HhcccCCccccCCCccCcCHHHHHHHHHHHHHHHHHH
Confidence 356777666666666788888844 333332 4566888888888766543
No 16
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=77.47 E-value=0.93 Score=35.48 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=26.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
+-||.+|-+|=..+|+.|.+.||+||..
T Consensus 19 m~dCKkAL~e~~gDiekAi~~LRkkG~a 46 (290)
T TIGR00116 19 MMDCKKALTEANGDFEKAIKNLRESGIA 46 (290)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhchh
Confidence 5699999999999999999999999964
No 17
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=77.46 E-value=0.94 Score=35.88 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=25.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
+-||..|-.|=..+|+.|.+.||+||+.
T Consensus 20 MmdCKkAL~E~~Gd~EkAie~LR~kG~a 47 (296)
T COG0264 20 MMDCKKALEEANGDIEKAIEWLREKGIA 47 (296)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhchH
Confidence 4599999999999999999999999973
No 18
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=76.44 E-value=7.4 Score=28.18 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHh-cccCccccchhHHHHHHHHHHHHHH
Q 034652 5 VKILTLLVAITALWFGLLQ-TSVIPRSHTGLLPIYFIVSLGCYGL 48 (88)
Q Consensus 5 ~~~l~~~~~l~~~w~~l~~-~~l~p~~~~~~lP~~~lv~fG~Ysl 48 (88)
.+.+.+.++..++|+.... ..++|+..-|.+|.|..+..|.-++
T Consensus 147 ~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~ 191 (206)
T PF06570_consen 147 WKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAF 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHH
Confidence 3456667777888987763 4557877667888887777775443
No 19
>COG1422 Predicted membrane protein [Function unknown]
Probab=76.35 E-value=17 Score=27.43 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=14.3
Q ss_pred CchHHHHHHHHHHHHHHH
Q 034652 60 TCPQEALLLQQDIKEAKE 77 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~ 77 (88)
...+.++|+|+|++|||+
T Consensus 76 ~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 76 ELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355678888899999887
No 20
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=75.96 E-value=0.97 Score=33.48 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=25.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
+-||.+|-.|=..+|+.|.+.||++|..
T Consensus 19 ~~~ck~AL~~~~gd~~~A~~~lr~~g~~ 46 (198)
T PRK12332 19 MMDCKKALEEANGDMEKAIEWLREKGLA 46 (198)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhh
Confidence 4699999999999999999999999964
No 21
>CHL00098 tsf elongation factor Ts
Probab=74.98 E-value=1.1 Score=33.34 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=25.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
+-||.+|-.|-..+|+.|.+.||++|..
T Consensus 16 ~~dck~AL~e~~gd~~~A~~~Lr~~g~~ 43 (200)
T CHL00098 16 MMDCKKALQEANGDFEKALESLRQKGLA 43 (200)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhh
Confidence 4599999999999999999999999964
No 22
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=74.63 E-value=7.7 Score=29.34 Aligned_cols=56 Identities=29% Similarity=0.534 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhcccCccccc----hhHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652 9 TLLVAITALWFGLLQTSVIPRSHT----GLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 9 ~~~~~l~~~w~~l~~~~l~p~~~~----~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~ 84 (88)
+....+.++-++.. ..++|++-+ ..+|+| +|..++-+.||+ +=+||++.|++||-
T Consensus 47 s~~lilaSL~~a~v-~~fvp~e~I~glLGLIPi~------------LGik~l~~~d~d--------~e~~~~e~L~~~~~ 105 (205)
T COG4300 47 SVILILASLLFAFV-LNFVPEEWILGLLGLIPIY------------LGIKVLILGDDD--------GEEEAKEELAFKKN 105 (205)
T ss_pred HHHHHHHHHHHHHH-HhhCcHHHHHHHHhHHHHH------------HhhHHhhcccCc--------CchhhhHHHHhccc
Confidence 34444444444433 455675433 344554 577788899993 34567777776654
Q ss_pred c
Q 034652 85 D 85 (88)
Q Consensus 85 ~ 85 (88)
+
T Consensus 106 k 106 (205)
T COG4300 106 K 106 (205)
T ss_pred c
Confidence 3
No 23
>PRK09377 tsf elongation factor Ts; Provisional
Probab=74.35 E-value=1.3 Score=34.70 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=26.5
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
-+-||.+|-+|=..+|+.|.+.||+||..
T Consensus 19 gm~dCKkAL~e~~gD~ekAi~~Lrk~G~a 47 (290)
T PRK09377 19 GMMDCKKALTEADGDIEKAIEWLRKKGLA 47 (290)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHhchh
Confidence 35699999999999999999999999974
No 24
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=73.90 E-value=8.6 Score=26.22 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.8
Q ss_pred ccCCchHHHHHHHHHHHHHHHH
Q 034652 57 YFPTCPQEALLLQQDIKEAKEY 78 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~d 78 (88)
..+.|.....++++||+.||..
T Consensus 18 ~~~gC~~K~~~Ie~qI~~Ak~~ 39 (115)
T PF06476_consen 18 ALTGCEAKEQAIEKQIEYAKAH 39 (115)
T ss_pred ccCcHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999963
No 25
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=71.44 E-value=5 Score=26.39 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=17.5
Q ss_pred hccCCchHHHHHHHHHHHHHHHH
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEY 78 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~d 78 (88)
++|++ +|.++|+.+.|+|||+.
T Consensus 101 irf~~-~e~a~~f~~~i~e~~~~ 122 (122)
T PF00638_consen 101 IRFKS-AEDADEFKKKIEEAKEK 122 (122)
T ss_dssp EE-SS-HHHHHHHHHHHHHHHHH
T ss_pred EEECC-HHHHHHHHHHHHHHhcC
Confidence 56666 68899999999999973
No 26
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=69.43 E-value=12 Score=22.52 Aligned_cols=39 Identities=5% Similarity=0.014 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHH
Q 034652 36 PIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKE 74 (88)
Q Consensus 36 P~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~e 74 (88)
-.+.|+.+-+|+.+..+|++..+-..-+..++..+|-++
T Consensus 17 tV~~Lig~T~~~g~~~~~~~y~~~~~~r~~~~~~~e~~~ 55 (59)
T PF14880_consen 17 TVLGLIGFTVYGGGLTVYTVYSYFKYNRRRRAEWIEREK 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888887777666665554444333
No 27
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=68.87 E-value=3.8 Score=25.04 Aligned_cols=28 Identities=36% Similarity=0.586 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+-|++++-|++.+.+=|+.|++.|+.++
T Consensus 45 ~~~~~~~~L~~~~~~L~~~L~~~G~~~~ 72 (85)
T PF02120_consen 45 ENPETKELLRQNLPELKERLQAQGLEVV 72 (85)
T ss_dssp -SSHHHHHHHHTHHHHHHHHHTTT-EEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 4789999999999999999999999875
No 28
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=68.32 E-value=3.8 Score=24.91 Aligned_cols=18 Identities=33% Similarity=0.763 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
+++++|.+.|+++|+.++
T Consensus 57 ~~~~~a~~~L~~~~v~vE 74 (76)
T PF09383_consen 57 EEIEKAIAYLREQGVEVE 74 (76)
T ss_dssp HHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHCCCeEE
Confidence 468999999999999874
No 29
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=68.17 E-value=6.5 Score=24.68 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=21.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 59 PTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+.||....++. +++++.+.++++|+++
T Consensus 36 ~~c~~c~~~l~-~l~~~~~~~~~~~~~v 62 (124)
T PF00578_consen 36 AWCPFCQAELP-ELNELYKKYKDKGVQV 62 (124)
T ss_dssp TTSHHHHHHHH-HHHHHHHHHHTTTEEE
T ss_pred cCccccccchh-HHHHHhhhhccceEEe
Confidence 36999997766 4889999999998765
No 30
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=67.85 E-value=4 Score=25.48 Aligned_cols=25 Identities=40% Similarity=0.699 Sum_probs=18.7
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
++|.++||-.. .||+-|.++|++++
T Consensus 5 iyt~~~CPyC~--------~ak~~L~~~g~~~~ 29 (80)
T COG0695 5 IYTKPGCPYCK--------RAKRLLDRKGVDYE 29 (80)
T ss_pred EEECCCCchHH--------HHHHHHHHcCCCcE
Confidence 57888899653 57788888888764
No 31
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=66.21 E-value=30 Score=27.54 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=31.0
Q ss_pred ccCccccchhHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 25 SVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 25 ~l~p~~~~~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
.++|+.+..++-..+.+.||.-+|- -|| .+++-+. |+|.+|.+++|++++
T Consensus 125 ~lipr~~T~~~~t~LF~iFGlkmL~-eg~---~~~~~~~-----~eE~eEVe~el~~~~ 174 (294)
T KOG2881|consen 125 NLIPRKYTYYLATALFLIFGLKMLK-EGW---EMSPSEG-----QEELEEVEAELAKRE 174 (294)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHH-Hhh---cCCCccc-----hhhHHHHHHHHHhcc
Confidence 4577777777777778888876653 344 3344333 556666666666654
No 32
>PRK05905 hypothetical protein; Provisional
Probab=65.91 E-value=6.3 Score=30.12 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=26.0
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~ 84 (88)
.+||.++.+.++--||+++|+.|++.|.
T Consensus 211 ~~NdLe~~a~~~~P~i~~~~~~l~~~g~ 238 (258)
T PRK05905 211 IHNDLQEPCFELYPNLLYKYNELLNDGF 238 (258)
T ss_pred cccccHHHHHHhChHHHHHHHHHHhCCC
Confidence 4899999999999999999999998874
No 33
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=65.52 E-value=37 Score=22.55 Aligned_cols=16 Identities=0% Similarity=0.059 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 034652 64 EALLLQQDIKEAKEYL 79 (88)
Q Consensus 64 A~~eL~~eI~eAk~dL 79 (88)
++.++++|++++++.+
T Consensus 28 ~~~~l~~q~~~~~~e~ 43 (105)
T PRK00888 28 DYWRVNDQVAAQQQTN 43 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555554443
No 34
>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents the riboflavin kinase domains from bacteria and eukaryotes.; GO: 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process; PDB: 1Q9S_A 1NB9_A 1P4M_A 1NB0_A 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A ....
Probab=64.67 E-value=8.9 Score=26.32 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=19.7
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHH
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~dL~ 80 (88)
..|++-+|=.+.++++|++||+.|+
T Consensus 101 ~kF~s~e~L~~qI~~D~~~a~~~lq 125 (125)
T PF01687_consen 101 KKFDSLEELKEQIKKDIEQARKYLQ 125 (125)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHHH-
T ss_pred cccCCHHHHHHHHHHHHHHHHHhcC
Confidence 3689999999999999999999875
No 35
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=64.01 E-value=5.6 Score=27.30 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=24.3
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~ 84 (88)
.++||.|.|.+-.+++++|.++++++.+
T Consensus 97 al~~C~~~y~~a~~~L~~a~~~l~~~~~ 124 (178)
T TIGR01614 97 ALEDCVELYSDAVDALDKALASLKSKDY 124 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4679999999999999999999987653
No 36
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.69 E-value=19 Score=22.67 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHH
Q 034652 45 CYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEY 78 (88)
Q Consensus 45 ~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~d 78 (88)
.|++..++.--..|++.++|.+.+++=|+.||+.
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5566677777788999999999999999999874
No 37
>CHL00105 psaJ photosystem I subunit IX
Probab=63.17 E-value=10 Score=22.02 Aligned_cols=22 Identities=32% Similarity=0.771 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVAITALWFGLL 22 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~w~~l~ 22 (88)
|+..+|+++.+=++..+|+...
T Consensus 1 M~~~~kyLstAPVla~~w~~~t 22 (42)
T CHL00105 1 MRDLKTYLSTAPVLSTLWFGFL 22 (42)
T ss_pred CchHHhHhhhhhHHHHHHHHHH
Confidence 8899999999999999999976
No 38
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=62.98 E-value=13 Score=23.67 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=25.2
Q ss_pred hhhccCCchHHHHHHHHHHHHHHHHHHh
Q 034652 54 GLMYFPTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 54 ~v~tFnDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
+-...+|++.+.-+|+..++.||+-++.
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~ 46 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIRE 46 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666999999999999999999998876
No 39
>PF15141 DUF4574: Domain of unknown function (DUF4574)
Probab=62.64 E-value=6.8 Score=25.84 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchHH-HHHHHHHHHHH
Q 034652 38 YFIVSLGCYGLLMVGIGLMYFPTCPQE-ALLLQQDIKEA 75 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tFnDcpeA-~~eL~~eI~eA 75 (88)
+++.+.++-..+-+||+++..-+--|+ -+|..|++-|+
T Consensus 6 ~~~~~~~llG~GGvG~~L~~LvtPgeerK~e~lK~~pe~ 44 (84)
T PF15141_consen 6 KALSVVALLGFGGVGYALFVLVTPGEERKQEMLKEMPEQ 44 (84)
T ss_pred HHHHHHHHHHccchhheeeeEeCCcHHHHHHHHHHcccc
Confidence 445555666666899999998887777 77888877544
No 40
>PRK00153 hypothetical protein; Validated
Probab=62.23 E-value=6 Score=26.01 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=23.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
|++-=..++++|+++++++++|+.+.++.
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~~~~~ 33 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQMEVEG 33 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEE
Confidence 44445678999999999999999887654
No 41
>PRK02733 photosystem I reaction center subunit IX; Provisional
Probab=61.21 E-value=12 Score=21.79 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVAITALWFGLL 22 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~w~~l~ 22 (88)
|+..+|+++.+=++..+|+...
T Consensus 1 M~~~~kyLstAPVla~~w~~~t 22 (42)
T PRK02733 1 MLGLTKFLSTAPVVAAIWLTLT 22 (42)
T ss_pred CchHHhHhhhhhHHHHHHHHHH
Confidence 8889999999999999999976
No 42
>TIGR02501 type_III_yscE type III secretion system protein, YseE family. Members of this family are found exclusively in type III secretion appparatus gene clusters in bacteria. Those bacteria with a protein from this family tend to target animal cells, as does Yersinia pestis. This protein is small (about 70 amino acids) and not well characterized.
Probab=61.03 E-value=13 Score=23.14 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=19.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q 034652 59 PTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
++++++++++..++.+|+..+++
T Consensus 9 ~~~~~~~~~~~~~L~~a~~~lk~ 31 (67)
T TIGR02501 9 SHADTAARAIIEQLEAALAELKE 31 (67)
T ss_pred ccChHHHHHHHHHHHHHHHHHHH
Confidence 34666799999999999999987
No 43
>PRK15366 type III secretion system chaperone SsaE; Provisional
Probab=60.90 E-value=13 Score=24.31 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~k 82 (88)
..+|||.++++..+..+|+.-|+..
T Consensus 11 Lr~~~~~a~~~i~~L~aa~~rL~~a 35 (80)
T PRK15366 11 LLHSREEAKGIILQLRAARKQLEEN 35 (80)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999863
No 44
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=60.56 E-value=16 Score=22.75 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHHhhhccCCchHHHHHHHHHHHHHHHHHHh
Q 034652 50 MVGIGLMYFPTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 50 ~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
.++++++-=+++--...+|++||++.++.|++
T Consensus 39 ~~~~~iLk~~g~lPp~i~l~kei~~l~~~l~~ 70 (71)
T PF09350_consen 39 RMANRILKNAGYLPPWIELRKEIEELREALAQ 70 (71)
T ss_pred HHHHHhhcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 46778888888888889999999999988874
No 45
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.82 E-value=8.1 Score=22.40 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
.+.+++++.|+++|+++
T Consensus 53 ~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 53 EDRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHHcCCcC
Confidence 46779999999999875
No 46
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=59.81 E-value=11 Score=24.98 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhcCCccC
Q 034652 66 LLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 66 ~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+-|+++|..-..+|++||++++
T Consensus 35 efl~eri~~L~~~L~kRgv~v~ 56 (86)
T PF09153_consen 35 EFLRERISRLIEFLKKRGVSVS 56 (86)
T ss_dssp HHHH-HHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHhcCceeE
Confidence 3466699999999999999885
No 47
>PRK14627 hypothetical protein; Provisional
Probab=59.70 E-value=4.7 Score=26.79 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=22.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
|++-=..++++|+++++++++|.++=++
T Consensus 3 ~~~~mkqaq~mQ~km~~~Q~el~~~~ve 30 (100)
T PRK14627 3 QRQLMQMAQQMQRQMQKVQEELAATIVE 30 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 4444567899999999999999987554
No 48
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.17 E-value=14 Score=24.48 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 61 CPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
-+|+-+.+++||++-=.+++..|+|+
T Consensus 26 lEeEk~~i~~dikdvy~eakg~GFDv 51 (85)
T COG3750 26 LEEEKKTIADDIKDVYAEAKGHGFDV 51 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 47888999999999999999999986
No 49
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=58.38 E-value=17 Score=23.47 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 61 CPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
-+|+-+.+..+|++.-++.+..|++.
T Consensus 16 LEeEk~~i~~dikdVyaEAK~~GfD~ 41 (74)
T PF10073_consen 16 LEEEKKAISDDIKDVYAEAKGNGFDT 41 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 36788889999999999999999985
No 50
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=57.84 E-value=19 Score=22.55 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~k 82 (88)
-+|+.++++..+..+|..+++++
T Consensus 11 ~~~~~~~~i~~~L~~a~~~vkr~ 33 (68)
T PF08988_consen 11 ASGEEARAIEQQLRQAQSQVKRK 33 (68)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999875
No 51
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=57.83 E-value=8.4 Score=30.82 Aligned_cols=38 Identities=32% Similarity=0.516 Sum_probs=29.5
Q ss_pred HHHHHhhhccCCc-hHHHHHHH--------------------------------HHHHHHHHHHHhcCCcc
Q 034652 49 LMVGIGLMYFPTC-PQEALLLQ--------------------------------QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 49 ~~vgy~v~tFnDc-peA~~eL~--------------------------------~eI~eAk~dL~~kG~~~ 86 (88)
..||..|.|=+|| ||+--+|. .+..+|-+.+|++|++|
T Consensus 114 ~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkv 184 (312)
T COG1242 114 GVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKV 184 (312)
T ss_pred CeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCCeE
Confidence 4688889999998 66666655 45677888888888876
No 52
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=57.78 E-value=9.8 Score=22.14 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=14.7
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+++-++||... .||+.|+++|+++
T Consensus 4 ly~~~~Cp~C~--------~ak~~L~~~~i~~ 27 (75)
T cd03418 4 IYTKPNCPYCV--------RAKALLDKKGVDY 27 (75)
T ss_pred EEeCCCChHHH--------HHHHHHHHCCCcE
Confidence 45566777543 4666666677654
No 53
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=56.80 E-value=9 Score=22.88 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=17.2
Q ss_pred hccCCchHHHHHHHHHHHHHHHH
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEY 78 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~d 78 (88)
.++.+|| ..+.|+++|++|=+.
T Consensus 42 l~~~~~~-~~~~l~~~i~~~l~~ 63 (72)
T PF01883_consen 42 LPTPACP-AAEPLREEIREALKA 63 (72)
T ss_dssp -SSTTHT-THHHHHHHHHHHHHT
T ss_pred ECCCCch-HHHHHHHHHHHHHHh
Confidence 4567888 999999999988553
No 54
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=56.61 E-value=44 Score=26.54 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-ccCCchHHHHHHH
Q 034652 33 GLLPIYFIVSLGCYGLLMVGIGLM-YFPTCPQEALLLQ 69 (88)
Q Consensus 33 ~~lP~~~lv~fG~Ysl~~vgy~v~-tFnDcpeA~~eL~ 69 (88)
..--+.-.+.|..=-..+||||.. ..++||.|.--+.
T Consensus 81 ~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~ 118 (336)
T PF01007_consen 81 NVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVT 118 (336)
T ss_dssp T-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHH
T ss_pred cccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHH
Confidence 445688888999999999999986 4799999886543
No 55
>KOG2257 consensus N-acetylglucosaminyltransferase complex, subunit PIG-P, required for phosphatidylinositol biosynthesis [Function unknown]
Probab=56.48 E-value=33 Score=24.51 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHH-----hcc--cCcc-ccchhHHHHHHHHHHHHHHHHHHHhhhccC----CchHHHHHHHHHHHH
Q 034652 10 LLVAITALWFGLL-----QTS--VIPR-SHTGLLPIYFIVSLGCYGLLMVGIGLMYFP----TCPQEALLLQQDIKE 74 (88)
Q Consensus 10 ~~~~l~~~w~~l~-----~~~--l~p~-~~~~~lP~~~lv~fG~Ysl~~vgy~v~tFn----DcpeA~~eL~~eI~e 74 (88)
.+.++..+|..+= ..+ ..|+ .-+..+|.|++++.-|+-.+-+||+-.+-. .|.--..+=.++++|
T Consensus 20 ~~~ViylIWai~P~~~l~~~gi~y~Psk~WalAip~~l~v~~l~~~v~ll~~N~e~tt~pl~Sl~ti~D~y~r~~~e 96 (135)
T KOG2257|consen 20 TLFVIYLIWAITPVPILESLGITYYPSKYWALAIPTYLLVAVLLAYVFLLGYNFESTTKPLDSLNTITDSYAREIQE 96 (135)
T ss_pred HHHHHHHHhhcccHHHHhhcCceeehHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCcchhhhhhhhhhccch
Confidence 4455666676542 111 2442 236788999999999999999999877655 343333344445444
No 56
>PRK14626 hypothetical protein; Provisional
Probab=55.91 E-value=9.6 Score=25.79 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=22.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
|++-=..++++|+++++++++|+++-+.
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~~v~ 34 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKEEIV 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 4444567899999999999999988554
No 57
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=55.66 E-value=9.9 Score=26.86 Aligned_cols=31 Identities=26% Similarity=0.492 Sum_probs=24.8
Q ss_pred HHHhhhccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 51 VGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 51 vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
=..||.|--|-+.. .++|+.||+.|+..|++
T Consensus 91 pvIGVITK~Dl~~~----~~~i~~a~~~L~~aG~~ 121 (143)
T PF10662_consen 91 PVIGVITKIDLPSD----DANIERAKKWLKNAGVK 121 (143)
T ss_pred CEEEEEECccCccc----hhhHHHHHHHHHHcCCC
Confidence 45589999998832 23899999999999985
No 58
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=54.75 E-value=11 Score=24.42 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcC
Q 034652 69 QQDIKEAKEYLERKG 83 (88)
Q Consensus 69 ~~eI~eAk~dL~~kG 83 (88)
++||++|++|+|+-.
T Consensus 88 ~eeI~qA~~dy~~g~ 102 (104)
T PF05726_consen 88 REEIEQAFEDYQNGK 102 (104)
T ss_dssp HHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCC
Confidence 468999999998753
No 59
>PHA02734 coat protein; Provisional
Probab=54.74 E-value=12 Score=26.88 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=24.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
|.|..++..|+.|-|+||-+-||.||--|
T Consensus 48 ~e~~k~aIHeiIK~IreA~kp~rn~g~gf 76 (149)
T PHA02734 48 DANAKAAIHAIIKMIKDAMKPLRNKGKGF 76 (149)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhcCCch
Confidence 45667888899999999999999988654
No 60
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=53.77 E-value=11 Score=21.32 Aligned_cols=24 Identities=46% Similarity=0.765 Sum_probs=14.3
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+++-++||.- +.||+.|+++|+++
T Consensus 3 vy~~~~C~~C--------~~~~~~L~~~~i~y 26 (60)
T PF00462_consen 3 VYTKPGCPYC--------KKAKEFLDEKGIPY 26 (60)
T ss_dssp EEESTTSHHH--------HHHHHHHHHTTBEE
T ss_pred EEEcCCCcCH--------HHHHHHHHHcCCee
Confidence 3455677754 34666666666654
No 61
>PF13071 DUF3935: Protein of unknown function (DUF3935)
Probab=52.73 E-value=22 Score=22.52 Aligned_cols=22 Identities=23% Similarity=0.766 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVAITALWFGLL 22 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~w~~l~ 22 (88)
|+|++++.-+..-++..|++.+
T Consensus 1 mtrlKqi~Gi~IsfFVFwfsmL 22 (68)
T PF13071_consen 1 MTRLKQIFGIIISFFVFWFSML 22 (68)
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999986
No 62
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=52.48 E-value=37 Score=22.18 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHH--HhhhccCCchHHHHHHH
Q 034652 40 IVSLGCYGLLMVG--IGLMYFPTCPQEALLLQ 69 (88)
Q Consensus 40 lv~fG~Ysl~~vg--y~v~tFnDcpeA~~eL~ 69 (88)
|+-||=||+..+| ||-+..|--.+-++++.
T Consensus 11 LIkfGRysaL~lGvaYGa~r~~~l~~~~e~~R 42 (81)
T KOG4326|consen 11 LIKFGRYSALSLGVAYGAFRLRQLREYHEDIR 42 (81)
T ss_pred HHHhhHHHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence 5678999887765 88888887766666554
No 63
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.40 E-value=11 Score=24.82 Aligned_cols=14 Identities=50% Similarity=0.700 Sum_probs=8.6
Q ss_pred HHHHHHHhcCCccC
Q 034652 74 EAKEYLERKGIDVS 87 (88)
Q Consensus 74 eAk~dL~~kG~~~d 87 (88)
+|++.|++-+++.|
T Consensus 17 ~a~eyl~rl~v~yd 30 (85)
T COG4545 17 PAVEYLERLNVDYD 30 (85)
T ss_pred HHHHHHHHcCCCce
Confidence 45666666666655
No 64
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=51.93 E-value=14 Score=25.02 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=25.1
Q ss_pred HHHhhhccCCchHHHHHHHHHHHHHHHHHH
Q 034652 51 VGIGLMYFPTCPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 51 vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~ 80 (88)
+|.|++.=.|++||.+.|.+.++...+.++
T Consensus 82 lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~ 111 (140)
T PRK03947 82 LGAGYSAEKDLDEAIEILDKRKEELEKALE 111 (140)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999987777665543
No 65
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=51.59 E-value=20 Score=26.72 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=19.8
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHhh
Q 034652 33 GLLPI-YFIVSLGCYGLLMVGIGL 55 (88)
Q Consensus 33 ~~lP~-~~lv~fG~Ysl~~vgy~v 55 (88)
.+.|+ |..+++|+.+.++..||=
T Consensus 6 ~~~P~~Y~~vl~~sl~~Fs~~YRk 29 (190)
T PF09802_consen 6 LYTPLAYVAVLVGSLATFSSIYRK 29 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46787 888999999999999984
No 66
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=51.26 E-value=10 Score=23.23 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHHHHH-HHHHHhcCCccCC
Q 034652 60 TCPQEALLLQQDIKEA-KEYLERKGIDVSE 88 (88)
Q Consensus 60 DcpeA~~eL~~eI~eA-k~dL~~kG~~~d~ 88 (88)
+-....++++++++++ +.++.+-|+.+++
T Consensus 72 ~~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~ 101 (121)
T cd02106 72 ELLEDRDEIAAEVREALQEDLDKYGIEVVD 101 (121)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3355677888888877 8899999988754
No 67
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=51.25 E-value=15 Score=28.54 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=25.0
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
..||.++.+-++..||++.|+.|.+.|
T Consensus 194 ~~Ndle~~~~~~~p~i~~~~~~l~~~~ 220 (288)
T PRK00650 194 TQNDLEKPVFRLRLDLKEKKHWLESLW 220 (288)
T ss_pred CCCchHHHHHHhChHHHHHHHHHHhcc
Confidence 589999999999999999999999863
No 68
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=50.81 E-value=59 Score=20.52 Aligned_cols=29 Identities=21% Similarity=0.067 Sum_probs=17.8
Q ss_pred HhhhccCCchHHHHHHHHHHHHHHHHHHh
Q 034652 53 IGLMYFPTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 53 y~v~tFnDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
|.-...+..-.+.+++++|+++.+++-++
T Consensus 32 ~~~~~~~~~~~~l~~l~~~~~~l~~e~~~ 60 (97)
T PF04999_consen 32 YSRHQSRQLFYELQQLEKEIDQLQEENER 60 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555677788888777776443
No 69
>PRK14624 hypothetical protein; Provisional
Probab=50.70 E-value=11 Score=25.90 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 61 CPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
-=.-+++.|+++++++++|.++=++
T Consensus 11 ~mkqAq~mQ~km~~~QeeL~~~~v~ 35 (115)
T PRK14624 11 ALSNMGNIREKMEEVKKRIASIRVV 35 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHhccEEE
Confidence 3456889999999999999987554
No 70
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=50.60 E-value=22 Score=25.26 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVAITALWFGLL 22 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~w~~l~ 22 (88)
|||+.+|+..++++.+.|..+.
T Consensus 1 Mk~l~~~l~~~~l~~~~l~~~~ 22 (132)
T PRK02515 1 MKRLLSLLTGFSLLLGLLGWLG 22 (132)
T ss_pred ChHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999998888777655
No 71
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=50.45 E-value=24 Score=28.07 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHH
Q 034652 33 GLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAK 76 (88)
Q Consensus 33 ~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk 76 (88)
...-+.+++.++.|.+..+--++.+.-+-++..+++.+|..||+
T Consensus 166 ~~~Gl~l~i~~~g~Glv~iP~~l~~~~~~~~~~~~~~~~~~~~~ 209 (471)
T PF04791_consen 166 NFWGLFLFIILLGYGLVAIPRDLWRSSNSYFRAAKLEDEAAEAK 209 (471)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhccccchhhhhcchhHHHH
Confidence 44556667778888888887777765555333333333333333
No 72
>PRK11637 AmiB activator; Provisional
Probab=50.33 E-value=48 Score=26.45 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccC-CchHHHHHHHHHHHHHHHHHH
Q 034652 36 PIYFIVSLGCYGLLMVGIGLMYFP-TCPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 36 P~~~lv~fG~Ysl~~vgy~v~tFn-DcpeA~~eL~~eI~eAk~dL~ 80 (88)
|...++++++-+++... ...+ +-.+..+++++||++.+++++
T Consensus 22 ~~~~~~ll~~~~~~~~~---~~~~~~~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 22 PILYASVLSAGVLLCAF---SAHASDNRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred hHHHHHHHHHHHHHhhh---cccchhhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544422 2322 456667777777777776665
No 73
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=50.26 E-value=27 Score=22.00 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCC
Q 034652 62 PQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 62 peA~~eL~~eI~eAk~dL~~kG~ 84 (88)
.|-..-||.||+.-|+++.+|+-
T Consensus 31 ~eRIalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 31 EERIALLQAEIERLKAELAKKKA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 45667899999999999999874
No 74
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=50.21 E-value=15 Score=22.68 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
+=|.+||+.|=++|+++
T Consensus 21 ~IIrqAK~~lV~~G~~~ 37 (59)
T PF11372_consen 21 DIIRQAKALLVQKGFSF 37 (59)
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 45999999999999976
No 75
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=49.74 E-value=53 Score=21.60 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHH
Q 034652 37 IYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAK 76 (88)
Q Consensus 37 ~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk 76 (88)
.+++..+|...++.+||.-+.-.--.+.-+.|++|+++=|
T Consensus 4 l~iv~~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk 43 (87)
T PF10883_consen 4 LQIVGGVGAVVALILAYLWWKVKKAKKQNAKLQKENEQLK 43 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777766665566666666655433
No 76
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=49.72 E-value=19 Score=25.40 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=19.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q 034652 59 PTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
+.-.+...+|++||++.|+++++
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~ 58 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNA 58 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHc
Confidence 55677889999999999999875
No 77
>PRK11087 oxidative stress defense protein; Provisional
Probab=49.64 E-value=22 Score=26.29 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=27.3
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+-+|-.+|.++..+..+...+.|++.|++-+
T Consensus 49 ~~~~~~~A~~~~~~~~~~v~~~L~~~Gi~~~ 79 (231)
T PRK11087 49 SAKDAATAKKQVDERVAQYLAFLEKNGIAKK 79 (231)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4568899999999999999999999999754
No 78
>PRK14629 hypothetical protein; Provisional
Probab=49.62 E-value=19 Score=24.12 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 034652 63 QEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~kG~ 84 (88)
..++++|+++++++++|.++=+
T Consensus 10 kqaq~mQ~km~~~Q~eL~~~~v 31 (99)
T PRK14629 10 KNMSSFKDNIDNIKKEISQIVV 31 (99)
T ss_pred HHHHHHHHHHHHHHHHHhccEE
Confidence 4578999999999999988744
No 79
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=48.07 E-value=18 Score=21.36 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=14.9
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+++-++||-. ..||+.|+++|+++
T Consensus 3 ly~~~~Cp~C--------~~ak~~L~~~~i~~ 26 (72)
T TIGR02194 3 VYSKNNCVQC--------KMTKKALEEHGIAF 26 (72)
T ss_pred EEeCCCCHHH--------HHHHHHHHHCCCce
Confidence 4566777754 34666666666654
No 80
>PRK14621 hypothetical protein; Provisional
Probab=48.05 E-value=15 Score=24.95 Aligned_cols=28 Identities=7% Similarity=0.083 Sum_probs=22.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~ 84 (88)
.|++-=..+++.|+++++++++|.++-+
T Consensus 5 nm~~mmkqaq~mQ~km~~~Q~eL~~~~v 32 (111)
T PRK14621 5 NLGDMMKQIQQAGEKMQDVQKQLEKLVA 32 (111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccEE
Confidence 3555667889999999999999988744
No 81
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=47.98 E-value=24 Score=25.24 Aligned_cols=27 Identities=7% Similarity=0.160 Sum_probs=23.4
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHh
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
-+||.=.+|+++++.++|++.|+++.+
T Consensus 124 ~~T~~vs~~~~~ki~~~i~~fRk~i~~ 150 (171)
T PF14394_consen 124 GLTMSVSREDYEKIKKEIREFRKKIIA 150 (171)
T ss_pred eeEEEeCHHHHHHHHHHHHHHHHHHHH
Confidence 456777899999999999999998864
No 82
>PRK10329 glutaredoxin-like protein; Provisional
Probab=47.98 E-value=17 Score=22.57 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=17.7
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
++|-++||... .||+.|.++|++++
T Consensus 5 lYt~~~Cp~C~--------~ak~~L~~~gI~~~ 29 (81)
T PRK10329 5 IYTRNDCVQCH--------ATKRAMESRGFDFE 29 (81)
T ss_pred EEeCCCCHhHH--------HHHHHHHHCCCceE
Confidence 56677888653 57777888888764
No 83
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=47.94 E-value=12 Score=21.51 Aligned_cols=16 Identities=44% Similarity=0.582 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCCcc
Q 034652 71 DIKEAKEYLERKGIDV 86 (88)
Q Consensus 71 eI~eAk~dL~~kG~~~ 86 (88)
.+++|++.|++.|+++
T Consensus 10 ~~~~a~~~l~~~g~~~ 25 (63)
T PF03793_consen 10 TYDEAKSILEAAGLTV 25 (63)
T ss_dssp BHHHHHHHHHHTT-EE
T ss_pred cHHHHHHHHHHCCCEE
Confidence 4789999999999954
No 84
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=47.59 E-value=19 Score=23.92 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCC
Q 034652 70 QDIKEAKEYLERKGI 84 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~ 84 (88)
+.+++++++|+++|+
T Consensus 82 e~l~~I~~~L~~~G~ 96 (98)
T PF02829_consen 82 EDLDKIEEALKKKGF 96 (98)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHCCC
Confidence 578889999999997
No 85
>PF04402 SIMPL: Protein of unknown function (DUF541); InterPro: IPR007497 Members of this family have so far been found in bacteria and mouse UniProtKB/Swiss-Prot or UniProtKB/TrEMBL entries. However possible family members have also been identified in translated rat (GenBank:AW144450) and human (GenBank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes, and thus regulate NF-kappa-B activity []. Separate experiments demonstrate that a mouse family member (named LaXp180) binds the Listeria monocytogenes surface protein ActA, which is a virulence factor that induces actin polymerisation. It may also bind stathmin, a protein involved in signal transduction and in the regulation of microtubule dynamics []. In bacteria its function is unknown, but it is thought to be located in the periplasm or outer membrane.
Probab=47.54 E-value=32 Score=23.75 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=24.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 59 PTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
+|-.+|.+++.+.++.+++.|++.|++
T Consensus 27 ~~~~~a~~~~~~~~~~~~~~l~~~g~~ 53 (210)
T PF04402_consen 27 KDAAEAYRKVNKRMNALIKALKSLGIP 53 (210)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 567899999999999999999999986
No 86
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=47.53 E-value=17 Score=23.96 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=25.5
Q ss_pred HHHHhhhccCCchHHHHHHHHHHHHHHHHHH
Q 034652 50 MVGIGLMYFPTCPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 50 ~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~ 80 (88)
-||-|++.=.+.+||.+-|.+.|+...+.+.
T Consensus 73 ~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~ 103 (126)
T TIGR00293 73 SIGSGYYVEKDAEEAIEFLKKRIEELEKAIE 103 (126)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999988887766554
No 87
>PF02352 Decorin_bind: Decorin binding protein; InterPro: IPR003332 Decorin is a proteoglycan that decorates collagen fibres. Borrelia burgdorferi causes lyme disease, a tick-borne infection that can develop into a chronic, multisystemic disorder. Decorin may mediate the adherence of B. burgdorferi to collagen fibres in skin and other tissues []. B. burgdorferi decorin binding protein A (DbpA) facilitates this binding [].
Probab=47.50 E-value=23 Score=25.37 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 63 QEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
.-+++...||..+|++=..+||.+|
T Consensus 6 SS~kdI~deI~kikkeA~~~GVnf~ 30 (140)
T PF02352_consen 6 SSAKDIKDEIDKIKKEAADKGVNFD 30 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3467889999999999999999986
No 88
>PF13239 2TM: 2TM domain
Probab=47.38 E-value=67 Score=19.90 Aligned_cols=12 Identities=17% Similarity=0.075 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHH
Q 034652 62 PQEALLLQQDIK 73 (88)
Q Consensus 62 peA~~eL~~eI~ 73 (88)
.=+-+++||+++
T Consensus 71 ~We~rki~k~m~ 82 (83)
T PF13239_consen 71 DWEERKIQKLME 82 (83)
T ss_pred hHHHHHHHHHhc
Confidence 333445555543
No 89
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=47.33 E-value=23 Score=23.85 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 034652 63 QEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~kG 83 (88)
.+|.++.+++++|+..|++|.
T Consensus 60 ~~Yv~~NerLqqa~~~Lkkk~ 80 (97)
T PF15136_consen 60 RTYVAMNERLQQARDQLKKKC 80 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367888899999999999874
No 90
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=47.02 E-value=25 Score=21.93 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccC
Q 034652 33 GLLPIYFIVSLGCYGLLMVGIGLMYFP 59 (88)
Q Consensus 33 ~~lP~~~lv~fG~Ysl~~vgy~v~tFn 59 (88)
-+.|++++|.+|+-+.+.-+++.++.|
T Consensus 5 el~PL~~~vg~a~~~a~~~~~r~l~~~ 31 (73)
T PF06522_consen 5 ELYPLFVIVGVAVGGATFYLYRLLLTN 31 (73)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 367999999999888887777765443
No 91
>COG2859 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.93 E-value=31 Score=26.73 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=25.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
=|.--+.+++|+++-+.-+++|.++|++=
T Consensus 65 ~n~~~~l~~~l~~~~~kI~afl~~~gi~e 93 (237)
T COG2859 65 GNTLQALYQDLEQQTEKIQAFLQAQGIPE 93 (237)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 36677899999999999999999999973
No 92
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=46.83 E-value=15 Score=19.73 Aligned_cols=25 Identities=36% Similarity=0.674 Sum_probs=16.8
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
++++++||.+. .++..|+.+|++++
T Consensus 3 ly~~~~~~~~~--------~~~~~l~~~~i~~~ 27 (71)
T cd00570 3 LYYFPGSPRSL--------RVRLALEEKGLPYE 27 (71)
T ss_pred EEeCCCCccHH--------HHHHHHHHcCCCcE
Confidence 56778888653 56677777777653
No 93
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=46.74 E-value=15 Score=24.76 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=21.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
.+.|| ..+|+. ++++..++++++|+.+
T Consensus 31 atwC~-C~~e~p-~l~~l~~~~~~~~~~v 57 (152)
T cd00340 31 ASKCG-FTPQYE-GLEALYEKYKDRGLVV 57 (152)
T ss_pred cCCCC-chHHHH-HHHHHHHHhcCCCEEE
Confidence 47899 888875 8888888888888754
No 94
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=46.74 E-value=27 Score=24.21 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 034652 63 QEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~ 81 (88)
++-..|++||++.|+|+|+
T Consensus 8 ~q~~~l~~~v~~lRed~r~ 26 (112)
T PF07439_consen 8 QQLGTLNAEVKELREDIRR 26 (112)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999985
No 95
>PRK09928 choline transport protein BetT; Provisional
Probab=46.45 E-value=1e+02 Score=27.17 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=42.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHH--------------------------H-----hhhccCCchHHHHHHHHH----HHHH
Q 034652 31 HTGLLPIYFIVSLGCYGLLMVG--------------------------I-----GLMYFPTCPQEALLLQQD----IKEA 75 (88)
Q Consensus 31 ~~~~lP~~~lv~fG~Ysl~~vg--------------------------y-----~v~tFnDcpeA~~eL~~e----I~eA 75 (88)
.+--+|+-.++.+-||++..-. | ++++|++..|+.+-+++. .+|-
T Consensus 481 ii~alPf~~I~ll~~~sl~k~l~~e~~~~~~~~~~~~~~~~~~~~~~~w~~RL~~~~~~p~~~~~~~f~~~~~~pA~~~v 560 (679)
T PRK09928 481 VIMGLPFSFVIFFVMAGLYKSLKVEDYRRASANRDTAPRLVGLQDRLNWKQRLSRVMNYPGTRYTRRMLDTVCRPAMEEV 560 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhccccCCccccCCCCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999987643 2 356777777777777765 4566
Q ss_pred HHHHHhcCCccC
Q 034652 76 KEYLERKGIDVS 87 (88)
Q Consensus 76 k~dL~~kG~~~d 87 (88)
+++|+++|++.+
T Consensus 561 ~~el~~~g~~~~ 572 (679)
T PRK09928 561 AQELRLRGAYVE 572 (679)
T ss_pred HHHHHHcCCeEE
Confidence 788899998753
No 96
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=45.73 E-value=18 Score=23.78 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=23.3
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
.++||-|-|.+-..++++|...++++.
T Consensus 72 al~~C~~~y~~a~~~L~~a~~~l~~~~ 98 (148)
T smart00856 72 ALKDCLELYDDAVDSLEKALEELKSGD 98 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467999999999999999999998653
No 97
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=45.56 E-value=45 Score=21.86 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHH-HHHhcCCcc
Q 034652 64 EALLLQQDIKEAKE-YLERKGIDV 86 (88)
Q Consensus 64 A~~eL~~eI~eAk~-dL~~kG~~~ 86 (88)
.-++|++-|++.-+ -++.+|+++
T Consensus 82 ~~~~le~~l~~~N~~~~~~~gi~i 105 (118)
T PF10256_consen 82 KLRELEKYLEQLNEELFKPRGIKI 105 (118)
T ss_pred HHHHHHHHHHHHHHHhcccCCcEE
Confidence 34455555555544 788899865
No 98
>PRK03762 hypothetical protein; Provisional
Probab=45.44 E-value=11 Score=25.36 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=22.8
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
.|++--+-+++.|+++++++++|.++=+.
T Consensus 6 ~~~~m~kqaqkmQ~km~~~Q~el~~~~v~ 34 (103)
T PRK03762 6 DFSKLGEMLEQMQKKAKQLEEENANKEFT 34 (103)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 44555567899999999999999987543
No 99
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=45.10 E-value=65 Score=26.43 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCccccchhH-----------------HHHHH----------HHHHHHHHHHHHHh
Q 034652 2 KHVVKILTLLVAITALWFGLLQTSVIPRSHTGLL-----------------PIYFI----------VSLGCYGLLMVGIG 54 (88)
Q Consensus 2 ~r~~~~l~~~~~l~~~w~~l~~~~l~p~~~~~~l-----------------P~~~l----------v~fG~Ysl~~vgy~ 54 (88)
+.++....-..-+-+++.+++.+..+|++....= |+.-. ..||+|..= =.=|
T Consensus 112 ~~a~~s~v~~~pl~sA~asllLDkylPkQ~~~L~~L~~elnfsN~aa~~~N~ll~~i~~F~~a~vYynl~sYl~Q-~~~g 190 (379)
T PF04518_consen 112 LPAKDSWVNSMPLQSAFASLLLDKYLPKQEDFLNPLGSELNFSNLAANYGNPLLEIINSFNNASVYYNLSSYLGQ-SKMG 190 (379)
T ss_pred hhhhhhhhhcCchHHHHHHHHHhccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHHHcCcCcceeeehHHHHhh-hccc
Confidence 3444455555667788888888888885431111 22221 356777543 1236
Q ss_pred hhccCC-chHHHHHHHHHHHHHHHHHHh
Q 034652 55 LMYFPT-CPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 55 v~tFnD-cpeA~~eL~~eI~eAk~dL~~ 81 (88)
.-+|.+ ..+|..-|.+|.+.+|+|+++
T Consensus 191 ~~~F~g~~~~a~~~l~~E~~~~~~di~~ 218 (379)
T PF04518_consen 191 TDNFPGSYFMALAKLEKEREQIRRDIKS 218 (379)
T ss_pred hhccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 778887 778888899999999999875
No 100
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=44.82 E-value=17 Score=24.05 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=22.8
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
.|++-=..++++|+++++++++|+++-++
T Consensus 6 n~~~m~kqaq~mQ~k~~~~q~eL~~~~v~ 34 (102)
T TIGR00103 6 NLGELMKQAQQMQEKMKKLQEEIAQFEVT 34 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 34555567889999999999999987554
No 101
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.72 E-value=18 Score=20.18 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCcc
Q 034652 72 IKEAKEYLERKGIDV 86 (88)
Q Consensus 72 I~eAk~dL~~kG~~~ 86 (88)
.+.+++.|+++|+++
T Consensus 50 ~~~~~~~L~~~G~~v 64 (65)
T cd04882 50 IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHCCceE
Confidence 678889999999875
No 102
>COG4093 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.62 E-value=45 Score=27.02 Aligned_cols=45 Identities=22% Similarity=0.178 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 32 TGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 32 ~~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
..++-+...|.+|.|+.+=.- ++..+++|....-++|+++|++.+
T Consensus 16 ~~wl~i~ivv~~g~ySaGWFy-----------lA~rle~~~~a~~a~l~a~Gv~~~ 60 (338)
T COG4093 16 LFWLVIAIVVLIGAYSAGWFY-----------LADRLEQQADAQAADLQARGVSGE 60 (338)
T ss_pred hhHHHHHHHHHHHHhcchHhh-----------HHhHHHHHHHHhhhhhhcccccce
Confidence 356666778889999875432 578899999999999999999763
No 103
>PLN02879 L-ascorbate peroxidase
Probab=43.98 E-value=19 Score=27.58 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhc
Q 034652 59 PTCPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~k 82 (88)
+-||+..++.+++++.+|+|+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (251)
T PLN02879 4 KSYPEVKEEYKKAVQRCKRKLRGL 27 (251)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999863
No 104
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=43.76 E-value=23 Score=27.83 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=25.8
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
-...|||+..+.++.-||+++...|++-|
T Consensus 211 ~~~~NdLe~~~~~~~p~v~~~~~~l~~~g 239 (289)
T COG1947 211 PFLINDLEKVALRLYPEVKEALSELLEYG 239 (289)
T ss_pred cccccchHHHHHHhChHHHHHHHHHhhcc
Confidence 44559999999999999999999999776
No 105
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=43.73 E-value=1.3e+02 Score=27.26 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=17.2
Q ss_pred HHHHHHHHHHH-HHHhhhccCCchHHHHHHHH
Q 034652 40 IVSLGCYGLLM-VGIGLMYFPTCPQEALLLQQ 70 (88)
Q Consensus 40 lv~fG~Ysl~~-vgy~v~tFnDcpeA~~eL~~ 70 (88)
+++|++-.+.. .+..-+++++-.||-.-|.+
T Consensus 52 l~~~~~~~~~~l~~~~rfr~P~~~ea~~Rle~ 83 (851)
T TIGR02302 52 LVLFAALALVALIPAIRFRWPSRDEALARLER 83 (851)
T ss_pred HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Confidence 44454444432 34445667777777766543
No 106
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=43.19 E-value=31 Score=24.35 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 034652 64 EALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 64 A~~eL~~eI~eAk~dL~~kG 83 (88)
+-++|..++++||++-++|+
T Consensus 132 ~~~~L~~~~~~a~~~~~~~~ 151 (170)
T PF09548_consen 132 YLEQLEQQLEEAREEAKKKG 151 (170)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45677799999999998875
No 107
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.09 E-value=29 Score=20.43 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCCccCC
Q 034652 70 QDIKEAKEYLERKGIDVSE 88 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d~ 88 (88)
.++++-++.|+++|+++.|
T Consensus 50 ~~~~~i~~~L~~~G~~~~d 68 (68)
T cd04885 50 EDLAELKERLEALGYPYVD 68 (68)
T ss_pred HHHHHHHHHHHHcCCCccC
Confidence 4777788889999998754
No 108
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=42.69 E-value=37 Score=24.33 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--CCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 38 YFIVSLGCYGLLMVGIGLMYF--PTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tF--nDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
|++-.++-++=.++.+.--.- =-.|+++.++++++.+--+..|+.|+.
T Consensus 76 ~~~~L~lNvTP~~vd~~~~~Ll~~v~p~~~~~~k~~L~~~a~~ik~~~vS 125 (181)
T TIGR02761 76 YFIQLRLNVTPESADAQHNALLGYVEPQNYGQIKSRLAKEAEEIKKANAS 125 (181)
T ss_pred HHHHHhccCChhhhhHHHHHHHhhcChhhHHHHHHHHHHHHHHHHhcCce
Confidence 334444444444555543333 237999999999999888899988874
No 109
>PRK14622 hypothetical protein; Provisional
Probab=42.67 E-value=13 Score=24.87 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=22.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
|++-=..++++|+++++++++|.++=++
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~~v~ 30 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEIAVE 30 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 4444567899999999999999987443
No 110
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=42.51 E-value=16 Score=31.28 Aligned_cols=28 Identities=32% Similarity=0.624 Sum_probs=22.7
Q ss_pred ccCCchHHHHHHHHH----HHHHHHHHHhcCCc
Q 034652 57 YFPTCPQEALLLQQD----IKEAKEYLERKGID 85 (88)
Q Consensus 57 tFnDcpeA~~eL~~e----I~eAk~dL~~kG~~ 85 (88)
..+||++||.-|-+| |.||++-+|+ |++
T Consensus 197 i~pdCAdAYILLAEEeA~Ti~Eae~l~rq-Avk 228 (539)
T PF04184_consen 197 INPDCADAYILLAEEEASTIVEAEELLRQ-AVK 228 (539)
T ss_pred hhhhhhHHHhhcccccccCHHHHHHHHHH-HHH
Confidence 347999999999988 9999988876 443
No 111
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=42.27 E-value=25 Score=22.07 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=28.1
Q ss_pred HHHhhhcc-CCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 51 VGIGLMYF-PTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 51 vgy~v~tF-nDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
+..|+.++ ++-.+..+++.+..+.|-..-+++|
T Consensus 125 ~~~G~~~~~~~~~~~~~~ll~~a~~al~~ak~~g 158 (161)
T PF00990_consen 125 LSIGIAVYDPNDGQDADELLKKADQALQEAKEQG 158 (161)
T ss_dssp EEEEEEEEETSTTSSHHHHHHHHHHHHHHHHHTT
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44678888 6888889999999999999998888
No 112
>PRK10847 hypothetical protein; Provisional
Probab=42.07 E-value=1.3e+02 Score=21.93 Aligned_cols=50 Identities=6% Similarity=0.004 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCchHH-----HHHHHHHHHHHHHHHHhcCCc
Q 034652 36 PIYFIVSLGCYGLLMVGIGLMYFPTCPQE-----ALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 36 P~~~lv~fG~Ysl~~vgy~v~tFnDcpeA-----~~eL~~eI~eAk~dL~~kG~~ 85 (88)
+..++...|+..-..++|.+-..---+-- ..-=++.++.+++.++|+|..
T Consensus 73 ~~~~~a~~Ga~lG~~i~Y~lGr~~G~~~l~~~~~~~~~~~~l~~~~~~~~r~G~~ 127 (219)
T PRK10847 73 MMVALMLIAAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHQFYEKHGGK 127 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHhhccccccCCHHHHHHHHHHHHHcCCE
Confidence 44667779999999999988876332211 011235689999999999964
No 113
>PF11683 DUF3278: Protein of unknown function (DUF3278); InterPro: IPR021697 This bacterial family of proteins has no known function.
Probab=41.55 E-value=83 Score=21.31 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCCc
Q 034652 71 DIKEAKEYLERKGID 85 (88)
Q Consensus 71 eI~eAk~dL~~kG~~ 85 (88)
|..+|++.++.+|+.
T Consensus 100 ~~~k~~k~~~~~~i~ 114 (129)
T PF11683_consen 100 EYSKAKKKLRKKGIK 114 (129)
T ss_pred cHHHHHHHHHHHHHH
Confidence 456788888888764
No 114
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=41.51 E-value=84 Score=20.23 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=9.8
Q ss_pred ccCCchHHHHHHHHHHH
Q 034652 57 YFPTCPQEALLLQQDIK 73 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~ 73 (88)
...+-=+.+.+||+|-+
T Consensus 117 vla~if~~g~~LqeE~d 133 (136)
T PF11188_consen 117 VLAEIFKKGIELQEEND 133 (136)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33334456777777754
No 115
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=41.32 E-value=28 Score=26.27 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=25.4
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
..||-++.+.++..++++.|+.|.+.|
T Consensus 205 ~~Ndle~~~~~~~P~~~~~~~~l~~~g 231 (271)
T PRK00343 205 FRNDCEPVVRKRYPEVAQALSWLLEYA 231 (271)
T ss_pred ccCCHHHHHHHhChHHHHHHHHHHhCC
Confidence 589999999999999999999999887
No 116
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=41.29 E-value=20 Score=20.86 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCcc
Q 034652 72 IKEAKEYLERKGIDV 86 (88)
Q Consensus 72 I~eAk~dL~~kG~~~ 86 (88)
.++|++.|+++|+++
T Consensus 50 ~~~~~~~L~~~G~~v 64 (66)
T cd04908 50 PDKAKEALKEAGFAV 64 (66)
T ss_pred HHHHHHHHHHCCCEE
Confidence 457888899999876
No 117
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=40.73 E-value=27 Score=22.80 Aligned_cols=23 Identities=13% Similarity=0.350 Sum_probs=19.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHH
Q 034652 29 RSHTGLLPIYFIVSLGCYGLLMV 51 (88)
Q Consensus 29 ~~~~~~lP~~~lv~fG~Ysl~~v 51 (88)
+++.+.++..+.++|++|+++-+
T Consensus 49 kev~l~l~ail~lL~a~Ya~fyl 71 (79)
T PF15168_consen 49 KEVALVLAAILVLLLAFYAFFYL 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568899999999999998754
No 118
>PLN00139 hypothetical protein; Provisional
Probab=40.69 E-value=23 Score=27.76 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=29.2
Q ss_pred hhhccCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 54 GLMYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 54 ~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
|=-.|-|+-.+++.|.++..+..+.|++||+..
T Consensus 141 GeT~~aD~~~v~~~L~~~~p~~~e~l~~~gv~y 173 (320)
T PLN00139 141 GQTPFVPSFRVTERMLEEFPEAVEEVEAKGLKY 173 (320)
T ss_pred CCCeeecHHHHHHHhhhhCHHHHHHHHhcCceE
Confidence 555678999999999999999999999999864
No 119
>PRK14625 hypothetical protein; Provisional
Probab=40.58 E-value=22 Score=24.12 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 61 CPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
-=..++++|+++++++++|.++-++
T Consensus 7 mmkqaq~mQ~km~~~Q~el~~~~v~ 31 (109)
T PRK14625 7 LMKQAQAMQQKLADAQARLAETTVE 31 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccEEE
Confidence 3456889999999999999887543
No 120
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=40.54 E-value=27 Score=20.54 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=14.4
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+++.+.||.. +.||+-|+++|+++
T Consensus 5 ly~~~~C~~C--------~ka~~~L~~~gi~~ 28 (73)
T cd03027 5 IYSRLGCEDC--------TAVRLFLREKGLPY 28 (73)
T ss_pred EEecCCChhH--------HHHHHHHHHCCCce
Confidence 4566777754 34666666666654
No 121
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=40.51 E-value=2e+02 Score=24.97 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=28.2
Q ss_pred HHHHHHHHHH--HHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 35 LPIYFIVSLG--CYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 35 lP~~~lv~fG--~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
.=++.++..| +|.+++++--+ .+......+-++.++++++.++++++.
T Consensus 281 ~i~~ml~g~~~~a~~ig~i~~li---~~~~~~~~~f~~~~~~~~~ym~~~~lp 330 (823)
T PLN03192 281 IIFYMLFNLGLTAYLIGNMTNLV---VEGTRRTMEFRNSIEAASNFVGRNRLP 330 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344443333 34444444433 333344566677899999999998875
No 122
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=40.19 E-value=32 Score=20.23 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 034652 66 LLLQQDIKEAKEYLER 81 (88)
Q Consensus 66 ~eL~~eI~eAk~dL~~ 81 (88)
+||++++.+.|++|-.
T Consensus 8 ~EL~~~l~~lr~eLf~ 23 (55)
T TIGR00012 8 EELAKKLDELKKELFE 23 (55)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6888999998888754
No 123
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.10 E-value=48 Score=21.99 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=19.1
Q ss_pred HHhhhccCCchHHHHHHHHHHHHHHH
Q 034652 52 GIGLMYFPTCPQEALLLQQDIKEAKE 77 (88)
Q Consensus 52 gy~v~tFnDcpeA~~eL~~eI~eAk~ 77 (88)
-.|+....+-.+..+++++|+++.++
T Consensus 23 ~~G~~~~~~l~~q~~~~~~e~~~l~~ 48 (105)
T PRK00888 23 KNGILDYWRVNDQVAAQQQTNAKLKA 48 (105)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788888888888887776554
No 124
>PRK12596 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=39.94 E-value=33 Score=24.55 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVAITALWFGLL 22 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~w~~l~ 22 (88)
|+|..+.....++++.+|+.+-
T Consensus 1 m~~~~~~~~l~~~L~~~WllL~ 22 (171)
T PRK12596 1 MKKILPYPLLFVSLVLFWLLLN 22 (171)
T ss_pred CcchhhHHHHHHHHHHHHHHHH
Confidence 8899999999999999999885
No 125
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=39.77 E-value=44 Score=20.58 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 034652 63 QEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~k 82 (88)
++.+.+.+||.+++..++++
T Consensus 87 ~~i~a~~~~~~~~~~~l~~~ 106 (125)
T PF13801_consen 87 AAIEALLEEIREAQAELRQE 106 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666554
No 126
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=39.72 E-value=39 Score=29.17 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 61 CPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+=|+....++.++|+|..||+.|..+|
T Consensus 396 ~~~Ei~~~k~~~~~~k~~Lr~eg~~~~ 422 (574)
T COG1080 396 SLEEIRWAKALLEEAKQELRAEGLAFD 422 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 457888899999999999999999987
No 127
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=39.71 E-value=47 Score=21.57 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=22.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
.||-..+|+- .+++-.+.++.+|+++
T Consensus 40 ~Cp~C~~~~p-~l~~l~~~~~~~~v~~ 65 (146)
T PF08534_consen 40 WCPPCRKELP-YLNELQEKYKDKGVDV 65 (146)
T ss_dssp TSHHHHHHHH-HHHHHHHHHHTTTCEE
T ss_pred CCCcchhhhh-hHHhhhhhhccCceEE
Confidence 6999999998 8888888889999875
No 128
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=39.52 E-value=1.2e+02 Score=24.13 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccCccccchhHHHHHHHHHHHHHHHH
Q 034652 6 KILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLM 50 (88)
Q Consensus 6 ~~l~~~~~l~~~w~~l~~~~l~p~~~~~~lP~~~lv~fG~Ysl~~ 50 (88)
||+++..+..++=.-+.+.+-+| +.-+..-.+||.|.+.+
T Consensus 128 Q~iAV~lA~~GV~~~~~~~g~lp-----wval~la~sf~~Ygl~R 167 (293)
T COG2962 128 QWIAVGLAAAGVLIQTWLLGSLP-----WVALALALSFGLYGLLR 167 (293)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHHHHH
Confidence 44455554444444444455556 78888888999998765
No 129
>cd06577 PASTA_pknB PASTA domain of bacterial serine/threonine kinase pknB-like proteins. PknB is a member of a group of related transmembrane sensor kinases present in many gram positive bacteria, which has been shown to regulate cell shape in Mycobacterium tubercolosis. PknB is a receptor-like transmembrane protein with an extracellular signal sensor domain (containing multiple PASTA domains) and an intracellular, eukaryotic serine/threonine kinase-like domain. The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBPs) and bacterial serine/threonine kinases. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain.
Probab=39.29 E-value=27 Score=18.81 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
+..++|++.|+++|+.+.
T Consensus 8 ~~~~~a~~~l~~~g~~~~ 25 (62)
T cd06577 8 MTLDEAKAALEAAGLKVG 25 (62)
T ss_pred CCHHHHHHHHHHCCCcee
Confidence 356889999999998763
No 130
>cd06575 PASTA_Pbp2x-like_2 PASTA domain of PBP2x-like proteins, second repeat. Penicillin-binding proteins (PBPs) are the major targets for beta-lactam antibiotics, like penicillins and cephalosporins. Beta-lactam antibiotics specifically inhibit transpeptidase activity by acylating the active site serine. PBPs catalyze key steps in the synthesis of the peptidoglycan, such as the interconnecting of glycan chains (polymers of N-glucosamine and N-acetylmuramic acid residues) and the cross-linking (transpeptidation) of short stem peptides, which are attached to glycan chains. Peptidoglycan is essential in cell division and protects bacteria from osmotic shock and lysis. PBP2x is one of the two monofunctional high molecular mass PBPs in Streptococcus pneumoniae and has been seen as the primary PBP target in beta-lactam-resistant strains. The PASTA domain is found at the C-termini of several PBPs and bacterial serine/threonine kinases. The name PASTA is derived from PBP and Serine/Threonine
Probab=39.03 E-value=25 Score=18.67 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
+.+++|++.|+++|+++
T Consensus 8 ~~~~~a~~~l~~~g~~~ 24 (54)
T cd06575 8 WSKRDALKLLELLGLKV 24 (54)
T ss_pred CCHHHHHHHHHHCCCeE
Confidence 35788999999998875
No 131
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=39.01 E-value=41 Score=19.36 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034652 65 ALLLQQDIKEAKEYLER 81 (88)
Q Consensus 65 ~~eL~~eI~eAk~dL~~ 81 (88)
..++..||++.|+.|..
T Consensus 5 ~~~ie~dIe~tR~~La~ 21 (49)
T PF12277_consen 5 PDEIERDIERTRAELAE 21 (49)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56889999999998853
No 132
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues. This domain inhibits pectinesterase/pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex []. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein []. This domain is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical in structure [].; GO: 0004857 enzyme inhibitor activity, 0030599 pectinesterase activity; PDB: 1X90_A 1X8Z_C 1X91_A 1XG2_B 1RJ4_D 2CJ4_B 2XQR_F 2CJ7_A 2CJ8_A 2CJ6_A ....
Probab=38.61 E-value=26 Score=22.84 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=23.3
Q ss_pred hccCCchHHHHHHHHHHHHHHHHH--HhcC
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEYL--ERKG 83 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~dL--~~kG 83 (88)
-.++||.+.|.+-..++++|.+.+ +.+.
T Consensus 73 ~~l~~C~~~y~~a~~~l~~a~~~l~~~~~~ 102 (152)
T PF04043_consen 73 QALQDCQELYDDAVDSLQRALEALNSKNGD 102 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 456889999999999999999999 5543
No 133
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=38.47 E-value=43 Score=22.98 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.0
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
+-++++|-+-..++++++++||..|..|.
T Consensus 78 ~~~i~~sq~~i~~lK~~L~~ak~~L~~~~ 106 (142)
T PF04048_consen 78 LSSISESQERIRELKESLQEAKSLLGCRR 106 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45667899999999999999999987653
No 134
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=38.35 E-value=42 Score=25.35 Aligned_cols=23 Identities=17% Similarity=0.470 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC
Q 034652 38 YFIVSLGCYGLLMVGIGLMYFPT 60 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tFnD 60 (88)
.+++.+|+.....=..|+++|+|
T Consensus 10 ~vLLliG~~f~ligaIGLlRfPD 32 (197)
T PRK12585 10 SIMILIGGLLSILAAIGVIRLPD 32 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Confidence 34455555555555555555555
No 135
>PRK09848 glucuronide transporter; Provisional
Probab=38.34 E-value=96 Score=23.86 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHH
Q 034652 40 IVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKE 74 (88)
Q Consensus 40 lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~e 74 (88)
++-..++.++.+.. ..++--+|.++|+++||+|
T Consensus 411 ~~p~~~~~~~~~~~--~~y~l~~~~~~~~~~~l~~ 443 (448)
T PRK09848 411 LVPCGFMLLAFVII--WFYPLTDKKFKEIVVEIDN 443 (448)
T ss_pred HHHHHHHHHHHHHH--HHeeCCHHHHHHHHHHHHH
Confidence 33334444444443 3577778999999999986
No 136
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=38.23 E-value=41 Score=23.93 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 034652 64 EALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 64 A~~eL~~eI~eAk~dL~~kG 83 (88)
+-++|..|+++||++-++|+
T Consensus 133 ~~e~L~~~~~~a~~~~~k~~ 152 (171)
T PRK08307 133 ALEHLEREEEEAEEEQKKNE 152 (171)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 44677789999999988875
No 137
>COG3347 Uncharacterized conserved protein [Function unknown]
Probab=38.08 E-value=41 Score=27.90 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=24.3
Q ss_pred HhhhccCCchHHHHHHH-HHHHHHHHHHHhcCC
Q 034652 53 IGLMYFPTCPQEALLLQ-QDIKEAKEYLERKGI 84 (88)
Q Consensus 53 y~v~tFnDcpeA~~eL~-~eI~eAk~dL~~kG~ 84 (88)
-|++||-|..+++=|.. .=|.||.+.++++|=
T Consensus 191 HGL~t~gdtak~~Ye~~I~~V~~Ae~~l~~~~g 223 (404)
T COG3347 191 HGLFTFGDTAKEAYERMISIVNEAEEYLARRGG 223 (404)
T ss_pred ccceEecccHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 58999999855555554 558999999999753
No 138
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=37.77 E-value=44 Score=19.81 Aligned_cols=17 Identities=29% Similarity=0.227 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034652 65 ALLLQQDIKEAKEYLER 81 (88)
Q Consensus 65 ~~eL~~eI~eAk~dL~~ 81 (88)
.+||++++.|.|++|-+
T Consensus 9 ~~eL~~~l~elk~eL~~ 25 (58)
T PF00831_consen 9 DEELQEKLEELKKELFN 25 (58)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47899999999988754
No 139
>PRK10638 glutaredoxin 3; Provisional
Probab=37.44 E-value=29 Score=20.98 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=17.6
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+++.++||-. ..||+.|+++|++++
T Consensus 6 ly~~~~Cp~C--------~~a~~~L~~~gi~y~ 30 (83)
T PRK10638 6 IYTKATCPFC--------HRAKALLNSKGVSFQ 30 (83)
T ss_pred EEECCCChhH--------HHHHHHHHHcCCCcE
Confidence 5667788854 457778888887754
No 140
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=37.18 E-value=64 Score=16.72 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=11.1
Q ss_pred ChHHHHHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVAITAL 17 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~ 17 (88)
|.|+|||+....++..+
T Consensus 1 ~~~LH~w~~~i~al~~l 17 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFML 17 (27)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 67889976665555444
No 141
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=37.13 E-value=1.1e+02 Score=19.66 Aligned_cols=20 Identities=25% Similarity=0.633 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhccCC
Q 034652 40 IVSLGCYGLLMVGIGLMYFPT 60 (88)
Q Consensus 40 lv~fG~Ysl~~vgy~v~tFnD 60 (88)
+.=||.|..+=||.-. .||+
T Consensus 8 vfKfg~Yv~fPI~~~~-~fN~ 27 (80)
T PF09803_consen 8 VFKFGMYVFFPIGMFY-YFNQ 27 (80)
T ss_pred HHHHHHHHHHHHHHHH-hcCC
Confidence 4557888888777333 3543
No 142
>PF10704 DUF2508: Protein of unknown function (DUF2508); InterPro: IPR019644 This entry represents a protein family of unknown function that is conserved in the firmicutes.
Probab=37.03 E-value=42 Score=20.69 Aligned_cols=20 Identities=25% Similarity=0.239 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 034652 63 QEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~k 82 (88)
+-=++|.++|+.||.++...
T Consensus 12 ~~d~~Ll~~I~~ak~ew~~a 31 (71)
T PF10704_consen 12 EYDEELLEEIEQAKQEWENA 31 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44468999999999988653
No 143
>PRK14623 hypothetical protein; Provisional
Probab=37.02 E-value=24 Score=23.84 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 62 PQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 62 peA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
=..++++|+++++++++|.++-+.
T Consensus 7 mkqaqkmQ~km~~~Qeel~~~~v~ 30 (106)
T PRK14623 7 MGKLKEAQQKVEATKKRLDTVLID 30 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhccEEE
Confidence 356899999999999999987543
No 144
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=36.94 E-value=1.1e+02 Score=19.50 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=19.6
Q ss_pred cchhHHHHHHHH-HHHHHHHHHHHhh---hccCCch
Q 034652 31 HTGLLPIYFIVS-LGCYGLLMVGIGL---MYFPTCP 62 (88)
Q Consensus 31 ~~~~lP~~~lv~-fG~Ysl~~vgy~v---~tFnDcp 62 (88)
.+.=+|.|+..| .+.+.++.+.--+ ..|+|-|
T Consensus 38 ~i~GlPlWF~~SCi~~~il~~~l~~~~vk~~Fkd~~ 73 (80)
T PF06196_consen 38 YIFGLPLWFFYSCIGGPILFIILVWLMVKFFFKDIP 73 (80)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 357789988766 5566665544333 3466655
No 145
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.90 E-value=49 Score=25.86 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=23.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 59 PTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
=|+.+-|+++++|+++--+.|+++|+.
T Consensus 4 l~Gk~~a~~i~~~l~~~v~~l~~~g~~ 30 (282)
T PRK14166 4 LDGKALSAKIKEELKEKNQFLKSKGIE 30 (282)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 378899999999999999999998864
No 146
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=36.39 E-value=39 Score=20.52 Aligned_cols=17 Identities=24% Similarity=0.132 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034652 65 ALLLQQDIKEAKEYLER 81 (88)
Q Consensus 65 ~~eL~~eI~eAk~dL~~ 81 (88)
.+||+++|.+.|++|-.
T Consensus 11 ~~eL~~~l~~lkkeL~~ 27 (66)
T PRK00306 11 VEELNEKLLELKKELFN 27 (66)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36788888888887743
No 147
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=36.32 E-value=1.5e+02 Score=20.64 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=28.5
Q ss_pred cCccccchhHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHH
Q 034652 26 VIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEY 78 (88)
Q Consensus 26 l~p~~~~~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~d 78 (88)
+.|+......==.+..+-|.|-+.+.. .=-..++.+++-++.++|++|||++
T Consensus 67 I~P~Ny~L~a~n~~~~~~q~~Ql~R~~-~y~~~~~~~~~~~~~~~~~~~~~~~ 118 (119)
T PF03650_consen 67 ITPRNYLLFACNFFNATTQLYQLYRKL-NYQYSQKKEAKQAEIEKEAKEAKKE 118 (119)
T ss_pred ecCchHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCchhHHHHHHHHHHHhhcc
Confidence 345443333333445555666666554 1122333444445889999999875
No 148
>PF10658 DUF2484: Protein of unknown function (DUF2484); InterPro: IPR018919 A role of this family in UDP-N-acetylenolpyruvoylglucosamine reductase, as MurB, could not be confirmed.
Probab=36.19 E-value=91 Score=20.18 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHh-cccCccccchhHHHHHHHHHHHHHHHHHHHh
Q 034652 11 LVAITALWFGLLQ-TSVIPRSHTGLLPIYFIVSLGCYGLLMVGIG 54 (88)
Q Consensus 11 ~~~l~~~w~~l~~-~~l~p~~~~~~lP~~~lv~fG~Ysl~~vgy~ 54 (88)
.+.+..+|...-. ..++|.....+-|-|.|+..|.-.++=++|.
T Consensus 4 slila~lWvv~A~~~AmLP~rd~hw~~a~~Lia~g~pLlg~v~~~ 48 (77)
T PF10658_consen 4 SLILACLWVVAANVVAMLPSRDNHWRPAYVLIAAGIPLLGWVTYQ 48 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCchhhcchhHHHHHHHHhhHhhhhHhh
Confidence 3556677776542 4567755556778888999998888888773
No 149
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=36.15 E-value=38 Score=20.00 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=14.5
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+++-++||.. .+||+-|+++|+++
T Consensus 3 ly~~~~Cp~C--------~~a~~~L~~~~i~~ 26 (79)
T TIGR02181 3 IYTKPYCPYC--------TRAKALLSSKGVTF 26 (79)
T ss_pred EEecCCChhH--------HHHHHHHHHcCCCc
Confidence 3455667754 45666667777654
No 150
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=36.12 E-value=37 Score=25.73 Aligned_cols=26 Identities=23% Similarity=0.077 Sum_probs=23.6
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhc
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~k 82 (88)
..||.++.+.++..+|.+.++.+++.
T Consensus 210 ~~Ndle~~~~~l~P~l~~~~~~l~~~ 235 (283)
T PRK14610 210 ARNDLLETAISLVPEIEEILFVLESL 235 (283)
T ss_pred hcCchHHHHHHhChHHHHHHHHHHhc
Confidence 48999999999999999999999763
No 151
>PRK13694 hypothetical protein; Provisional
Probab=35.90 E-value=59 Score=21.44 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
--+|+-+.+.++|++--++-+..|+++
T Consensus 23 RLEeEkk~i~~dikdVyaEAK~~GfD~ 49 (83)
T PRK13694 23 RLEEEKKTISDDIKDVYAEAKGNGFDV 49 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 346777888888998888889999875
No 152
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=35.90 E-value=38 Score=23.31 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 034652 66 LLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 66 ~eL~~eI~eAk~dL~~kG 83 (88)
..|.+||+.|++.||++.
T Consensus 55 ~~LLqDie~~eksLq~r~ 72 (109)
T PF15134_consen 55 KQLLQDIEAAEKSLQTRP 72 (109)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 468899999999999884
No 153
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.86 E-value=54 Score=26.22 Aligned_cols=15 Identities=7% Similarity=-0.077 Sum_probs=13.2
Q ss_pred cCCchHHHHHHHHHH
Q 034652 58 FPTCPQEALLLQQDI 72 (88)
Q Consensus 58 FnDcpeA~~eL~~eI 72 (88)
.||.+|.+++|.+.+
T Consensus 253 VNDs~e~a~~L~~~l 267 (344)
T PRK14464 253 VNDSDEEMDGIVRLL 267 (344)
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998755
No 154
>smart00090 RIO RIO-like kinase.
Probab=35.70 E-value=59 Score=23.76 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=30.0
Q ss_pred HhhhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 53 IGLMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 53 y~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+|.+.+.+-|....-|++++++....++++|+.-+
T Consensus 192 Fg~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 226 (237)
T smart00090 192 VSQSVELDHPMALEFLERDIRNIIRFFRRKGVDEL 226 (237)
T ss_pred ChhhhccCCcchHHHHHHHHHHHHHHHHHcCCCcC
Confidence 56677788888888899999999999999998754
No 155
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=35.66 E-value=74 Score=21.01 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=23.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCccCC
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGIDVSE 88 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~~d~ 88 (88)
|-+++-.++..+++..-..|+..|..+||
T Consensus 90 ~d~~~L~~~~~~v~~~i~~L~~lg~~~~~ 118 (145)
T PF03564_consen 90 DDPEALRSLVDKVNNCIRALKALGVNVDD 118 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 46777788888888999999999988764
No 156
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=35.35 E-value=2.1e+02 Score=22.01 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHH
Q 034652 33 GLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 33 ~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~ 80 (88)
-+.|.+.++....-......-.+.+..+-.++-++|++|+.+.++.++
T Consensus 43 ~~~p~~~~~~~p~~~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 43 AVTLNYYIQNRPREVFDGISENLKDVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred eeEHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456887776555544445555555666677777788888877655444
No 157
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=35.26 E-value=43 Score=19.75 Aligned_cols=17 Identities=29% Similarity=0.214 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034652 65 ALLLQQDIKEAKEYLER 81 (88)
Q Consensus 65 ~~eL~~eI~eAk~dL~~ 81 (88)
.+||++++.+.|++|-+
T Consensus 8 ~~eL~~~l~~l~~elf~ 24 (57)
T cd00427 8 DEELQEKLDELKKELFN 24 (57)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36888888888887744
No 158
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=35.25 E-value=39 Score=19.72 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=16.9
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+++++.||-. ..+|..|+.||++++
T Consensus 4 Ly~~~~~p~c--------~kv~~~L~~~gi~y~ 28 (77)
T cd03040 4 LYQYKTCPFC--------CKVRAFLDYHGIPYE 28 (77)
T ss_pred EEEcCCCHHH--------HHHHHHHHHCCCceE
Confidence 4567777754 457778888887653
No 159
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=35.15 E-value=49 Score=23.53 Aligned_cols=20 Identities=15% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 034652 64 EALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 64 A~~eL~~eI~eAk~dL~~kG 83 (88)
+-++|..++++||++-++|+
T Consensus 132 ~~~~L~~~~~~a~~~~~k~~ 151 (170)
T TIGR02833 132 TLEHLERQLTEAEDEQKKNE 151 (170)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45667789999999988774
No 160
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=35.08 E-value=1e+02 Score=24.09 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=6.5
Q ss_pred ChHHHHHHHHH
Q 034652 1 MKHVVKILTLL 11 (88)
Q Consensus 1 M~r~~~~l~~~ 11 (88)
|+|+.-++.++
T Consensus 1 M~r~l~~~~~l 11 (398)
T PRK10747 1 MLKVLLLFVLL 11 (398)
T ss_pred CHHHHHHHHHH
Confidence 88877643333
No 161
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=35.03 E-value=53 Score=25.21 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=26.5
Q ss_pred HHHHhhhccCCchHHHHHHHHHHHHHHHHHHh
Q 034652 50 MVGIGLMYFPTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 50 ~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
..+|+++.=+.|--.-.||++||.+....+|.
T Consensus 129 r~~nRILknaG~lPpwIeL~KEI~~~i~~lR~ 160 (221)
T PLN03085 129 DTLYRILSKNGCAPEWVELNKEIRGQINEWRS 160 (221)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35788888888877788899999999877765
No 162
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=35.01 E-value=20 Score=25.19 Aligned_cols=12 Identities=25% Similarity=0.528 Sum_probs=6.9
Q ss_pred ccCCchHHHHHH
Q 034652 57 YFPTCPQEALLL 68 (88)
Q Consensus 57 tFnDcpeA~~eL 68 (88)
||+||-.+.+-|
T Consensus 15 t~~~C~~ak~iL 26 (147)
T cd03031 15 TFEDCNNVRAIL 26 (147)
T ss_pred cChhHHHHHHHH
Confidence 677775544444
No 163
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=34.80 E-value=23 Score=22.84 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=24.5
Q ss_pred HHHhhhccCCchHHHHHHHHHHHHHHHHHHh
Q 034652 51 VGIGLMYFPTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 51 vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
||.|++.-.+++||.+-+.+.|++.++.+++
T Consensus 65 lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~ 95 (120)
T PF02996_consen 65 LGAGYYVEMSLEEAIEFLKKRIKELEEQLEK 95 (120)
T ss_dssp EETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCeEEEecHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888889999998888887777665543
No 164
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=34.75 E-value=1.2e+02 Score=20.86 Aligned_cols=43 Identities=23% Similarity=0.155 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhccCC----chHHHHHHHHHHHHHHHHHHhcCC
Q 034652 40 IVSLGCYGLLMVGIGLMYFPT----CPQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 40 lv~fG~Ysl~~vgy~v~tFnD----cpeA~~eL~~eI~eAk~dL~~kG~ 84 (88)
+++...|.+..+.+.+- +| -.+...|+++||++.|+++.+.+=
T Consensus 13 ~~~~~ly~~~~~~~tI~--~DI~~k~~~~~~~~~~ei~~C~~~Y~~N~C 59 (135)
T PF10104_consen 13 LVSIFLYLVYSFISTIR--SDINHKIEQYKLELLQEIAQCKKEYEENRC 59 (135)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 44555555554444433 23 356677899999999999988764
No 165
>PF07811 TadE: TadE-like protein; InterPro: IPR012495 The members of this family are similar to a region of the protein product of the bacterial tadE locus (Q9S4A6 from SWISSPROT). In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces []. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria []. All tad loci but TadA have putative transmembrane regions [], and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.
Probab=34.75 E-value=77 Score=16.89 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcc
Q 034652 33 GLLPIYFIVSLGCYGLLMVGIGLMYF 58 (88)
Q Consensus 33 ~~lP~~~lv~fG~Ysl~~vgy~v~tF 58 (88)
..+|+.+++.+|..-++...|.=.+.
T Consensus 9 lv~Pvl~~~~~~~~~~~~~~~~~~~~ 34 (43)
T PF07811_consen 9 LVLPVLLLLLFGIVELGRMFYAQQVL 34 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999988888887764443
No 166
>PRK02463 OxaA-like protein precursor; Provisional
Probab=34.72 E-value=2.3e+02 Score=22.31 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHH-Hh-cccCcccc-----chhHHHHHHHH-----HH-HHH----HHHHHHhhhccCC---
Q 034652 1 MKHVVKILTLLVAITALWFGL-LQ-TSVIPRSH-----TGLLPIYFIVS-----LG-CYG----LLMVGIGLMYFPT--- 60 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~w~~l-~~-~~l~p~~~-----~~~lP~~~lv~-----fG-~Ys----l~~vgy~v~tFnD--- 60 (88)
|++.++++..+++++.+=+.. +. .+--+.+. ...-|+..++- +| .|. +.+|..|+..|+=
T Consensus 2 ~~~~k~~~~~~~~~~~~~~lsgc~~~~~~~~~~g~~~~~l~~p~~~~l~~i~~~~g~~~GlaII~~TiivRlillPL~i~ 81 (307)
T PRK02463 2 KKTLKRILFSGLALSMLLTLTGCVGRDKHGNPTGFIWNFLGAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLY 81 (307)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888877765555442222 21 11111111 23345544442 23 233 4466777777751
Q ss_pred -------chHHHHHHHHHHHHHHHHHH
Q 034652 61 -------CPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 61 -------cpeA~~eL~~eI~eAk~dL~ 80 (88)
--+.-+++|-|+++-++.++
T Consensus 82 q~~ka~~~~~KM~~lqPe~~~Iq~Kyk 108 (307)
T PRK02463 82 QSWKATYQSEKMAYLKPVFEPINERLK 108 (307)
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHh
Confidence 12555566666666665554
No 167
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=34.71 E-value=1.4e+02 Score=20.06 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=23.3
Q ss_pred Ccc-ccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 034652 27 IPR-SHTGLLPIYFIVSLGCYGLLMVGIGLMYF 58 (88)
Q Consensus 27 ~p~-~~~~~lP~~~lv~fG~Ysl~~vgy~v~tF 58 (88)
.|+ .-+..+|.|++++.-..-++-.+++.+..
T Consensus 40 ~P~kyWAlaiP~~~l~~~l~~~~~y~~~N~~~T 72 (126)
T PF08510_consen 40 YPDKYWALAIPSWLLMAMLFTYVGYPAYNLVLT 72 (126)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 553 34688899999987777777777776443
No 168
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=34.45 E-value=2e+02 Score=23.09 Aligned_cols=40 Identities=30% Similarity=0.461 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh------cccCccccchhHHHHHHHH
Q 034652 3 HVVKILTLLVAITALWFGLLQ------TSVIPRSHTGLLPIYFIVS 42 (88)
Q Consensus 3 r~~~~l~~~~~l~~~w~~l~~------~~l~p~~~~~~lP~~~lv~ 42 (88)
+.++++-++.++.++...+++ ..-+|-...+.+|..++.+
T Consensus 129 ~~~~~~~iL~~i~gi~~~aYTGflLaa~~giPFwNnp~LPvLfL~s 174 (305)
T COG3301 129 AVHRALEILMAILGVLLGAYTGFLLAALKGIPFWNNPALPVLFLFS 174 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCchhHHHHHHh
Confidence 456677777777777777763 2236777889999998887
No 169
>COG4327 Predicted membrane protein [Function unknown]
Probab=34.41 E-value=59 Score=22.12 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCCchHHH
Q 034652 33 GLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEA 65 (88)
Q Consensus 33 ~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~ 65 (88)
..|-+|+||+|+. .++.=...-++|-+-|-.|
T Consensus 23 ~lL~vwflVSfvv-i~fa~alst~rifg~pf~y 54 (101)
T COG4327 23 ALLGVWFLVSFVV-ILFARALSTMRIFGWPFGY 54 (101)
T ss_pred HHHHHHHHHHHHH-HHHHHhhcccEEeccchhh
Confidence 4566777777777 5555555555555555443
No 170
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.01 E-value=37 Score=21.96 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=22.1
Q ss_pred HHHHhhhccCCchHHHHHHHHHHHHHHHHH
Q 034652 50 MVGIGLMYFPTCPQEALLLQQDIKEAKEYL 79 (88)
Q Consensus 50 ~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL 79 (88)
.||.|++.=.|.+||-+.+.+.|+..++.+
T Consensus 74 ~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~ 103 (129)
T cd00890 74 DLGTGVYVEKSLEEAIEFLKKRLETLEKQI 103 (129)
T ss_pred EecCCEEEEecHHHHHHHHHHHHHHHHHHH
Confidence 367788888888988888877666555443
No 171
>PF00959 Phage_lysozyme: Phage lysozyme; InterPro: IPR002196 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 24 GH24 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). This entry includes Bacteriophage lambda lysozyme and Escherichia coli endolysin []. Lysozyme helps to release mature phage particles from the cell wall by breaking down the peptidoglycan. The enzyme hydrolyses the 1,4-beta linkages between N-acetyl-D-glucosamine and N-acetylmuramic acid in peptidoglycan heteropolymers of prokaryotic cell walls. E. coli endolysin also functions in bacterial cell lysis and acts as a transglycosylase. The Bacteriophage T4 lysozyme structure contains 2 domains, the interface between which forms the active-site cleft. The N terminus of the 2 domains undergoes a 'hinge-bending' motion about an axis passing through the molecular waist [, ]. This mobility is thought to be important in allowing access of substrates to the enzyme active site.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1XJT_A 1XJU_A 1K28_A 1WTH_A 2Z6B_A 1AM7_C 3D3D_B 1D9U_B 2ANX_A 2ANV_B ....
Probab=33.97 E-value=51 Score=20.93 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=20.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcC
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
+..+|..-|+++|+++++.+++-.
T Consensus 20 t~~qa~~ll~~d~~~~~~~v~~~~ 43 (110)
T PF00959_consen 20 TEAQADELLQKDLQKAEAAVRRYV 43 (110)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456888899999999999998754
No 172
>PF11373 DUF3175: Protein of unknown function (DUF3175); InterPro: IPR021513 This entry is represented by Ralstonia phage RSL1, Orf186. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=33.87 E-value=68 Score=21.27 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHh
Q 034652 70 QDIKEAKEYLER 81 (88)
Q Consensus 70 ~eI~eAk~dL~~ 81 (88)
+-.++||++||+
T Consensus 71 ~~LE~AK~eLR~ 82 (86)
T PF11373_consen 71 AVLERAKDELRK 82 (86)
T ss_pred HHHHHHHHHHHH
Confidence 446778888775
No 173
>PF15603 Imm45: Immunity protein 45
Probab=33.69 E-value=37 Score=21.99 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 62 PQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 62 peA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
|=--+|.|+=|++.++.+.++|++++
T Consensus 55 ~it~~e~q~II~aI~~~~~~~~~~v~ 80 (82)
T PF15603_consen 55 PITIAERQKIIEAIEKYFSERGMTVD 80 (82)
T ss_pred ccCHHHHHHHHHHHHHHHhcCceEEE
Confidence 44567899999999999999999874
No 174
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=33.60 E-value=62 Score=23.69 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 61 CPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
.|+++.++++++.+.-+..|+.|+.
T Consensus 101 ~p~~~~~lk~~L~~~a~~Ik~~~vS 125 (188)
T PRK13726 101 RPGAQNQMKVILAEEAKRIKNDNVN 125 (188)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCce
Confidence 7999999999999888888888764
No 175
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.53 E-value=57 Score=25.49 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
|+.+-|+++++||++.-+.|+++|++
T Consensus 5 dGk~iA~~i~~~ik~~v~~l~~~g~~ 30 (282)
T PRK14182 5 DGKQIAAKVKGEVATEVRALAARGVQ 30 (282)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67888999999999999999998864
No 176
>COG1894 NuoF NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]
Probab=33.40 E-value=39 Score=28.17 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHH
Q 034652 41 VSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKE 77 (88)
Q Consensus 41 v~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~ 77 (88)
+..++|+++.--==++.=.+.|+|++-||+-|+||++
T Consensus 114 m~IA~yA~gA~~~YiYiRgEy~~a~~~l~~AI~eA~~ 150 (424)
T COG1894 114 MIIAAYAVGATKGYIYIRGEYPEAIERLQKAIEEAYA 150 (424)
T ss_pred HHHHHHHhccceeEEEEecchHHHHHHHHHHHHHHHH
Confidence 5667777765444466778999999999999999986
No 177
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=33.36 E-value=58 Score=21.89 Aligned_cols=24 Identities=21% Similarity=0.514 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCc
Q 034652 38 YFIVSLGCYGLLMVGIGLMYFPTC 61 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tFnDc 61 (88)
+.++..|+.....=+.|+.+|+|-
T Consensus 4 ~~lll~G~~f~l~g~iGllR~PD~ 27 (104)
T PRK12675 4 LLFLLFGYSIMFFGALGLLRFPDV 27 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcH
Confidence 456778888888888899999884
No 178
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=33.20 E-value=54 Score=21.18 Aligned_cols=22 Identities=32% Similarity=0.237 Sum_probs=18.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHh
Q 034652 60 TCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~ 81 (88)
++.|+.++|.+||.+.+..|+.
T Consensus 13 ~~~e~k~~Li~ei~~LQ~sL~~ 34 (80)
T PF10224_consen 13 LEKEEKEELIQEILELQDSLEA 34 (80)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4668889999999999988863
No 179
>PF15523 Toxin_44: Putative toxin 44
Probab=33.01 E-value=47 Score=21.53 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.8
Q ss_pred CCc-hHHHHHHHHHHHHH
Q 034652 59 PTC-PQEALLLQQDIKEA 75 (88)
Q Consensus 59 nDc-peA~~eL~~eI~eA 75 (88)
.|| |+.+.+|++|...|
T Consensus 4 G~C~~~~~~~l~~ev~~~ 21 (84)
T PF15523_consen 4 GNCSPAEHAKLRAEVSRA 21 (84)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 367 99999999999887
No 180
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=32.81 E-value=44 Score=20.34 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
+++++..+.|+++|+++
T Consensus 82 ~~v~~~~~~l~~~g~~~ 98 (125)
T cd07241 82 EAVDELTERLRADGYLI 98 (125)
T ss_pred HHHHHHHHHHHHCCCEE
Confidence 47888899999999875
No 181
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=32.80 E-value=40 Score=23.37 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhhccC
Q 034652 44 GCYGLLMVGIGLMYFP 59 (88)
Q Consensus 44 G~Ysl~~vgy~v~tFn 59 (88)
|.-.++.+.|-.-.|+
T Consensus 68 g~~~ls~lsW~~~y~r 83 (118)
T PF01277_consen 68 GLTALSSLSWMYNYFR 83 (118)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3334444445444443
No 182
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=32.78 E-value=27 Score=25.16 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCccCC
Q 034652 61 CPQEALLLQQDIKEAKEYLERKGIDVSE 88 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~kG~~~d~ 88 (88)
|.++-.||+++|. +.|++||+++.|
T Consensus 7 ~Dhag~~lK~~I~---~~Lk~~g~~v~D 31 (151)
T COG0698 7 SDHAGYELKEIII---DHLKSKGYEVID 31 (151)
T ss_pred cCcccHHHHHHHH---HHHHHCCCEEEe
Confidence 5667788888884 689999998754
No 183
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=32.57 E-value=57 Score=23.47 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhccCC--------chHHHHHHHHHHHHHHHHHHhc
Q 034652 45 CYGLLMVGIGLMYFPT--------CPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 45 ~Ysl~~vgy~v~tFnD--------cpeA~~eL~~eI~eAk~dL~~k 82 (88)
+=..-.+.-++-|.+| .|++-.+.|+.|++.|.+|..+
T Consensus 100 s~~~Kav~q~LetlPD~LERd~gL~p~~v~~vQ~~iD~lR~~l~~~ 145 (152)
T PF07278_consen 100 SEMAKAVVQVLETLPDILERDAGLPPEQVARVQSVIDDLRDQLAER 145 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677788887 5999999999999999999875
No 184
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=32.54 E-value=51 Score=24.99 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=21.8
Q ss_pred hhhccCCchHHHH-HHHHHHHHHHHHHH
Q 034652 54 GLMYFPTCPQEAL-LLQQDIKEAKEYLE 80 (88)
Q Consensus 54 ~v~tFnDcpeA~~-eL~~eI~eAk~dL~ 80 (88)
.+++| |.|++.. .|++-.+.||.-+-
T Consensus 153 ~Lm~f-dyP~~l~~~LR~K~Dvar~~le 179 (204)
T COG2178 153 ELMEF-DYPKALVPGLRQKQDVARSLLE 179 (204)
T ss_pred HHHhc-CCchhhhhhHHHHHHHHHHHHH
Confidence 46799 9999999 99999888887654
No 185
>COG1741 Pirin-related protein [General function prediction only]
Probab=32.37 E-value=39 Score=26.25 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcC
Q 034652 69 QQDIKEAKEYLERKG 83 (88)
Q Consensus 69 ~~eI~eAk~dL~~kG 83 (88)
++||++|++|+|+-.
T Consensus 260 ~e~i~~a~~~~~~g~ 274 (276)
T COG1741 260 KEEIEQAKRDWREGR 274 (276)
T ss_pred HHHHHHHHHHHHcCC
Confidence 468999999999764
No 186
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=32.32 E-value=2.1e+02 Score=21.25 Aligned_cols=47 Identities=17% Similarity=0.050 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHH
Q 034652 34 LLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 34 ~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~ 80 (88)
.-|+.-.+..-.-.+...--...++.+-.++-++|++|+++-+.++.
T Consensus 47 ~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 47 VSPVQRVVNAPREFVSGVFESLASLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44665555555444444445555666777777888888877666554
No 187
>PF14029 DUF4244: Protein of unknown function (DUF4244)
Probab=32.31 E-value=1.2e+02 Score=18.46 Aligned_cols=33 Identities=9% Similarity=-0.023 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchHHHHHHHH
Q 034652 38 YFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQ 70 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~ 70 (88)
|++.+.+.=+++.+.|-|.|=+...++-..+-+
T Consensus 20 YAvgtlAA~afA~vL~~vvts~~v~~~L~~ii~ 52 (56)
T PF14029_consen 20 YAVGTLAAAAFAGVLYKVVTSDEVRSALTGIIE 52 (56)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 889999999999999999998777776655543
No 188
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.23 E-value=61 Score=22.98 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 034652 68 LQQDIKEAKEYLER 81 (88)
Q Consensus 68 L~~eI~eAk~dL~~ 81 (88)
+.+||++-|++|++
T Consensus 159 ~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 159 LSEEIEKLKKELEK 172 (192)
T ss_pred hHHHHHHHHHHHHH
Confidence 34455555555544
No 189
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=32.16 E-value=24 Score=24.85 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=25.4
Q ss_pred hhhccCCchHHHHHHHHHHHHH-HHHHHhcCCccCC
Q 034652 54 GLMYFPTCPQEALLLQQDIKEA-KEYLERKGIDVSE 88 (88)
Q Consensus 54 ~v~tFnDcpeA~~eL~~eI~eA-k~dL~~kG~~~d~ 88 (88)
+-++++|.-+.-.++.++|.+. +.++++-|+.+++
T Consensus 99 ~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~ 134 (215)
T cd03403 99 GKMELDELLSEREEINAELVEILDEATDPWGVKVER 134 (215)
T ss_pred ccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEE
Confidence 4456666666677788887755 8889999998764
No 190
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=32.15 E-value=51 Score=20.71 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhc
Q 034652 61 CPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~k 82 (88)
-+|+|++|+.+|++-+..+-.-
T Consensus 34 ~seeY~eL~~ri~~lr~~ld~~ 55 (71)
T PF08663_consen 34 ESEEYQELEDRIEELRAELDDT 55 (71)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999887654
No 191
>PRK00587 hypothetical protein; Provisional
Probab=32.12 E-value=40 Score=22.50 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=21.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 59 PTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
++-=..++++|+++++++++|.++=++
T Consensus 4 ~~lmkqaqkmQ~km~~~QeeL~~~~v~ 30 (99)
T PRK00587 4 QKLAQQLKKMQNTMEKKQKEFEEKEFD 30 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 333456889999999999999887543
No 192
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=32.02 E-value=52 Score=18.41 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHh
Q 034652 67 LLQQDIKEAKEYLER 81 (88)
Q Consensus 67 eL~~eI~eAk~dL~~ 81 (88)
+|.++|++.|..|-+
T Consensus 1 ~L~~~Ie~~R~~L~~ 15 (45)
T PF09388_consen 1 ELLEEIEELRQELNE 15 (45)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 578899999988754
No 193
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=31.99 E-value=49 Score=20.54 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
++++++.+.|+++|+++
T Consensus 73 ~dv~~~~~~l~~~G~~~ 89 (122)
T cd07265 73 ADLEKLEARLQAYGVAV 89 (122)
T ss_pred HHHHHHHHHHHHCCCcE
Confidence 57889999999999876
No 194
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=31.95 E-value=42 Score=23.91 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=25.9
Q ss_pred HHHHHHhhhccCCchHHHHHHHHHHHHHHHHHH
Q 034652 48 LLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 48 l~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~ 80 (88)
+..||-|+....|..||.+-|++.|++=++..+
T Consensus 79 iV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~ 111 (145)
T COG1730 79 IVSIGSGYYAEKSADEAIEFLKKRIEELEKAIE 111 (145)
T ss_pred EEEcCCceeeeecHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999988766554443
No 195
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=31.81 E-value=46 Score=25.29 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=24.8
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~ 84 (88)
.+||.++...++--+|++.++.+++.|-
T Consensus 215 ~~ndle~~~~~~~p~l~~i~~~l~~~Ga 242 (293)
T TIGR00154 215 GLNDLEKVALKRHTEVAQALNWLLEYGL 242 (293)
T ss_pred hcCccHHHHHhcCHHHHHHHHHHHhCCC
Confidence 4799988888888999999999999874
No 196
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=31.67 E-value=46 Score=23.74 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=23.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 59 PTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
.--.+||+-|...+..|.=.|.-+|++++
T Consensus 51 ~~in~AY~~L~dp~~Ra~YlL~l~g~~~~ 79 (166)
T PRK01356 51 SELNNAYSTLKDALKRAEYMLLLQNINLN 79 (166)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHccCCCCC
Confidence 34457888888889999999999998875
No 197
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.66 E-value=65 Score=25.14 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=23.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
|+.+-++++++|+++.-+.|+++|++
T Consensus 5 ~Gk~va~~i~~~l~~~v~~l~~~g~~ 30 (282)
T PRK14169 5 DGRAVSKKILADLKQTVAKLAQQDVT 30 (282)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67888999999999999999998864
No 198
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.62 E-value=47 Score=20.70 Aligned_cols=27 Identities=7% Similarity=0.085 Sum_probs=18.9
Q ss_pred hhhccCCchHHHHHHHHHHHHHHHHHH
Q 034652 54 GLMYFPTCPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 54 ~v~tFnDcpeA~~eL~~eI~eAk~dL~ 80 (88)
++|.-.|.+++..+|.++++..+.++.
T Consensus 53 ~~fv~~~~~~~~~~L~~~~~~~~~~i~ 79 (106)
T PF01920_consen 53 KMFVKQDKEEAIEELEERIEKLEKEIK 79 (106)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456666778888877777777666654
No 199
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.54 E-value=53 Score=18.14 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
+++++..+.|+++|+++
T Consensus 55 ~~l~~l~~~l~~~g~~~ 71 (73)
T cd04886 55 EHIEEIIAALREAGYDV 71 (73)
T ss_pred HHHHHHHHHHHHcCCEE
Confidence 45677778889999876
No 200
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=31.48 E-value=67 Score=20.43 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhc
Q 034652 61 CPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~k 82 (88)
-+++.++|+++|++.++++++.
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~ 89 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAAL 89 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999888887653
No 201
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=31.47 E-value=47 Score=18.15 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=12.6
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+++-+.||.. ..||..|+++|+++
T Consensus 4 ly~~~~Cp~C--------~~~~~~L~~~~i~~ 27 (72)
T cd02066 4 VFSKSTCPYC--------KRAKRLLESLGIEF 27 (72)
T ss_pred EEECCCCHHH--------HHHHHHHHHcCCcE
Confidence 3445566633 44555566665543
No 202
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=31.42 E-value=48 Score=18.83 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=16.3
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+.++++||-. +.+|..|+.+|++++
T Consensus 3 ly~~~~~~~~--------~~v~~~l~~~gi~~~ 27 (73)
T cd03059 3 LYSGPDDVYS--------HRVRIVLAEKGVSVE 27 (73)
T ss_pred EEECCCChhH--------HHHHHHHHHcCCccE
Confidence 4567777743 345666788888764
No 203
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=31.40 E-value=73 Score=24.85 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=24.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
|=..+|+..+.++-++|++++|+++|...+
T Consensus 144 mV~~~~E~~~~~~~l~~~~~~L~~~g~~~~ 173 (293)
T PF02896_consen 144 MVSTVEEVREAKEILEEVKEELREEGIPFD 173 (293)
T ss_dssp S--SHHHHHHHHHHHHHHHHHHHHHTCTTG
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 335788999999999999999999987653
No 204
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=31.35 E-value=72 Score=23.69 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHh--cCCccC
Q 034652 64 EALLLQQDIKEAKEYLER--KGIDVS 87 (88)
Q Consensus 64 A~~eL~~eI~eAk~dL~~--kG~~~d 87 (88)
+.+++++++++.++.|++ +|++++
T Consensus 74 ~~~~l~~~~~~l~~~l~~~p~~i~i~ 99 (217)
T PF08900_consen 74 ARQELQELIARLDALLAELPKGISIS 99 (217)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCcccc
Confidence 345556666666666666 677664
No 205
>PF00237 Ribosomal_L22: Ribosomal protein L22p/L17e; InterPro: IPR001063 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L22 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L22 is known to bind 23S rRNA. It belongs to a family of ribosomal proteins which includes: bacterial L22; algal and plant chloroplast L22 (in legumes L22 is encoded in the nucleus instead of the chloroplast); cyanelle L22; archaebacterial L22; mammalian L17; plant L17 and yeast YL17.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3CD6_R 1Q7Y_S 1VQ6_R 1YI2_R 1QVF_Q 3CCR_R 3CCU_R 3CCL_R 1YJ9_R 3CCQ_R ....
Probab=31.35 E-value=80 Score=20.45 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHHHHHH-hcCCccCC
Q 034652 61 CPQEALLLQQDIKEAKEYLE-RKGIDVSE 88 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~-~kG~~~d~ 88 (88)
...+++.+.+-|++|.+.-. .+|++.|+
T Consensus 36 ~~k~a~~i~k~L~~a~~nA~~~~g~d~~~ 64 (105)
T PF00237_consen 36 PKKAAKFILKLLKSAIANAENNKGLDPDN 64 (105)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCTSTCGG
T ss_pred cHHHHHHHHhhHHHHHhhcccccccccCc
Confidence 45677889999999999999 99998763
No 206
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=31.25 E-value=46 Score=20.54 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
.+++++.+.|+++|+++.
T Consensus 66 ~d~~~~~~~l~~~Gi~~~ 83 (112)
T cd08344 66 DDFAAFARHLEAAGVALA 83 (112)
T ss_pred hhHHHHHHHHHHcCCcee
Confidence 578889999999999763
No 207
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=31.21 E-value=76 Score=20.65 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=30.9
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHH-HHHHHHHHhcCCccCC
Q 034652 47 GLLMVGIGLMYFPTCPQEALLLQQDI-KEAKEYLERKGIDVSE 88 (88)
Q Consensus 47 sl~~vgy~v~tFnDcpeA~~eL~~eI-~eAk~dL~~kG~~~d~ 88 (88)
...+-..|=+|+.+.-+.-+++.++| ++.+++++.-|+++++
T Consensus 66 ~~lR~~ig~~tl~el~~~R~~i~~~i~~~v~~~~~~~Gi~i~~ 108 (128)
T cd03399 66 GHLRAVVGTMTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELDS 108 (128)
T ss_pred HHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 34445566778888878888888885 4567889999998753
No 208
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=31.21 E-value=75 Score=19.29 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 034652 62 PQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 62 peA~~eL~~eI~eAk~dL~~ 81 (88)
-+-.++|.++|++.+++||+
T Consensus 25 ~~~~~~L~~~i~~~~~eLr~ 44 (87)
T PF08700_consen 25 RQLENKLRQEIEEKDEELRK 44 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999986
No 209
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=31.17 E-value=47 Score=20.34 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
.+++++.+.|+++|+++.
T Consensus 76 ~dv~~~~~~l~~~g~~~~ 93 (125)
T cd08357 76 EEFDALAERLEAAGVEFL 93 (125)
T ss_pred HHHHHHHHHHHHCCCcEe
Confidence 688999999999998764
No 210
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=31.14 E-value=61 Score=20.02 Aligned_cols=17 Identities=41% Similarity=0.501 Sum_probs=13.9
Q ss_pred ChHHHHHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVAITAL 17 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~ 17 (88)
||+..+|+..+..++++
T Consensus 1 mk~~~~s~~ala~l~sL 17 (58)
T COG5567 1 MKNVFKSLLALATLFSL 17 (58)
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 89999998888877743
No 211
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=31.07 E-value=1.5e+02 Score=21.68 Aligned_cols=28 Identities=0% Similarity=-0.243 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 034652 34 LLPIYFIVSLGCYGLLMVGIGLMYFPTC 61 (88)
Q Consensus 34 ~lP~~~lv~fG~Ysl~~vgy~v~tFnDc 61 (88)
-..+|.|+.+..++++.+.++.+.|+-.
T Consensus 14 k~vm~~Ll~~Si~s~aiiieR~~~~~~~ 41 (211)
T TIGR02797 14 KAVMIGLALASVVTWTIWIAKSVELAGA 41 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999998888543
No 212
>PRK12592 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=31.07 E-value=79 Score=22.01 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCc
Q 034652 37 IYFIVSLGCYGLLMVGIGLMYFPTC 61 (88)
Q Consensus 37 ~~~lv~fG~Ysl~~vgy~v~tFnDc 61 (88)
.+.++..|+.....=+.|+.+|+|.
T Consensus 11 ~~~lll~G~~f~l~gaiGllRfPD~ 35 (126)
T PRK12592 11 SLVFILSGAFLSFSASIGLIRFRDT 35 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 4567777888888888888999884
No 213
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=30.74 E-value=56 Score=18.01 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=6.0
Q ss_pred hhccCCchHHH
Q 034652 55 LMYFPTCPQEA 65 (88)
Q Consensus 55 v~tFnDcpeA~ 65 (88)
+++.++||...
T Consensus 4 l~~~~~c~~c~ 14 (73)
T cd02976 4 VYTKPDCPYCK 14 (73)
T ss_pred EEeCCCChhHH
Confidence 34566676543
No 214
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=30.69 E-value=39 Score=21.15 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
.+|+++.+.|+++|+++
T Consensus 77 ~D~d~~~~~l~~~G~~~ 93 (109)
T PF13669_consen 77 DDLDAAIARLEAQGFRV 93 (109)
T ss_dssp SHHHHHHHHHHHTTECE
T ss_pred CCHHHHHHHHHHCCCEE
Confidence 37899999999999875
No 215
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.65 E-value=55 Score=20.20 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhcCCcc
Q 034652 69 QQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 69 ~~eI~eAk~dL~~kG~~~ 86 (88)
.+++++.++.|+++|+++
T Consensus 52 ~~~~~~i~~~L~~~G~~~ 69 (85)
T cd04906 52 AEELAELLEDLKSAGYEV 69 (85)
T ss_pred HHHHHHHHHHHHHCCCCe
Confidence 356888888999999986
No 216
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=30.58 E-value=1.2e+02 Score=24.98 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 034652 61 CPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~ 81 (88)
-.|...+||+||++-|+++..
T Consensus 40 ~~~~i~~Lq~QI~~Lq~ei~~ 60 (383)
T PF12097_consen 40 DQQEISELQKQIQQLQAEINQ 60 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999988764
No 217
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=30.53 E-value=50 Score=20.47 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
++++++.+.|+++|+++.
T Consensus 80 ~d~~~~~~~l~~~g~~~~ 97 (128)
T cd07242 80 EAVDELYARLAKRGAEIL 97 (128)
T ss_pred HHHHHHHHHHHHcCCeEe
Confidence 468888888888888764
No 218
>PRK12671 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=30.51 E-value=73 Score=22.09 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCc
Q 034652 37 IYFIVSLGCYGLLMVGIGLMYFPTC 61 (88)
Q Consensus 37 ~~~lv~fG~Ysl~~vgy~v~tFnDc 61 (88)
.++++.+|+.....=..|+.+|+|.
T Consensus 15 ~~~lll~G~~f~l~gaiGllR~PD~ 39 (120)
T PRK12671 15 VAFFLVLGAGLTLIGTIGLVRLKSF 39 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 4567788888888889999999984
No 219
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.48 E-value=40 Score=19.32 Aligned_cols=13 Identities=38% Similarity=0.465 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCcc
Q 034652 74 EAKEYLERKGIDV 86 (88)
Q Consensus 74 eAk~dL~~kG~~~ 86 (88)
++++.|+++|+++
T Consensus 56 ~~~~~L~~~G~~v 68 (72)
T cd04883 56 PIIEDLRRAGYEV 68 (72)
T ss_pred HHHHHHHHCCCee
Confidence 7888899999876
No 220
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=30.46 E-value=2.2e+02 Score=20.81 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 034652 2 KHVVKILTLLVAITALWFGLL 22 (88)
Q Consensus 2 ~r~~~~l~~~~~l~~~w~~l~ 22 (88)
||..+|++++..+..+=..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (205)
T PRK06231 6 TRVFKLLLLSFSFLIISLFLV 26 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567777776665555544443
No 221
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=30.35 E-value=21 Score=29.03 Aligned_cols=24 Identities=8% Similarity=0.256 Sum_probs=18.5
Q ss_pred HHHHHhhhccCCchHHHHHHHHHH
Q 034652 49 LMVGIGLMYFPTCPQEALLLQQDI 72 (88)
Q Consensus 49 ~~vgy~v~tFnDcpeA~~eL~~eI 72 (88)
-.+-=||.+||||.+-.+|.-.|-
T Consensus 111 pai~~gVI~yNdc~D~t~Eiil~f 134 (347)
T PF06306_consen 111 PAIDEGVIGYNDCTDGTEEIILEF 134 (347)
T ss_pred HHHhccEEEeecCCCCHHHHHHHH
Confidence 345568999999999998875543
No 222
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=30.33 E-value=56 Score=20.27 Aligned_cols=16 Identities=19% Similarity=0.162 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 034652 65 ALLLQQDIKEAKEYLE 80 (88)
Q Consensus 65 ~~eL~~eI~eAk~dL~ 80 (88)
.+||++++.|.|++|=
T Consensus 14 ~~eL~~~l~elk~elf 29 (67)
T CHL00154 14 DSEISEEIIKTKKELF 29 (67)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3688888888888764
No 223
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.09 E-value=2.3e+02 Score=21.65 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 33 GLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 33 ~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
|..|=..++.+...++-.+||. +.+.+.-|.-+++..|=+|=|..+++|-.++
T Consensus 20 pl~~rlv~~lL~~~~V~~lGy~-f~~s~k~eel~~~~~eEe~LKs~~q~K~~~a 72 (211)
T COG3167 20 PLAPRLVFCLLAVAAVLGLGYA-FYLSGKLEELEELEAEEEELKSTYQQKAIQA 72 (211)
T ss_pred chhHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777778886 4688999999999999999999999886543
No 224
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=30.07 E-value=1.6e+02 Score=19.04 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 034652 63 QEALLLQQDIKEAK 76 (88)
Q Consensus 63 eA~~eL~~eI~eAk 76 (88)
+-.+|++++++-.|
T Consensus 106 ~t~~~l~~d~~~lk 119 (121)
T PF07332_consen 106 ETIAELKEDIAALK 119 (121)
T ss_pred HHHHHHHHHHHHhh
Confidence 44455555555444
No 225
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=29.99 E-value=70 Score=21.96 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCc
Q 034652 38 YFIVSLGCYGLLMVGIGLMYFPTC 61 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tFnDc 61 (88)
+.++.+|+.....=+.|+.+|+|.
T Consensus 11 ~ill~~G~~~~ligaiGllR~PD~ 34 (118)
T PRK12587 11 LIFVIIGALISALAAIGLLRLEDV 34 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcH
Confidence 456777888777788888888884
No 226
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=29.95 E-value=67 Score=22.93 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCc
Q 034652 37 IYFIVSLGCYGLLMVGIGLMYFPTC 61 (88)
Q Consensus 37 ~~~lv~fG~Ysl~~vgy~v~tFnDc 61 (88)
...++.+|+.....=..|+.+|+|-
T Consensus 12 ~~ill~lG~~f~ligaIGllRfPD~ 36 (145)
T PRK12586 12 AAIMILLGSIIALISAIGIVKFQDV 36 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 4567788888888888899999883
No 227
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=29.90 E-value=62 Score=19.94 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
++|+++.+.|+++|+++.
T Consensus 78 ~dvd~~~~~l~~~G~~~~ 95 (122)
T cd07235 78 AEVDALYAELVGAGYPGH 95 (122)
T ss_pred HHHHHHHHHHHHCCCCcC
Confidence 578999999999998753
No 228
>PF09351 DUF1993: Domain of unknown function (DUF1993); InterPro: IPR018531 This family of proteins are functionally uncharacterised. ; PDB: 2OQM_C 3QTH_A.
Probab=29.87 E-value=43 Score=23.91 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=19.9
Q ss_pred HhhhccCCchHHHHHHHHHHHHHHHHHHh
Q 034652 53 IGLMYFPTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 53 y~v~tFnDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
--.-.|+|-+.-.+||++.|+++.+.|++
T Consensus 70 ~e~p~~~~~~~tfa~L~~ri~~ti~~L~~ 98 (162)
T PF09351_consen 70 VEPPSFEDNETTFAELQARIAKTIAYLES 98 (162)
T ss_dssp -GS----S--SSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 34457999999999999999999999975
No 229
>COG2886 Uncharacterized small protein [Function unknown]
Probab=29.68 E-value=47 Score=21.93 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 63 QEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+|++-...++.|=+..|+++|++..
T Consensus 46 ~Aaela~~sl~ef~~eL~~R~i~l~ 70 (88)
T COG2886 46 RAAELAGMSLNEFEEELRKRGIPLY 70 (88)
T ss_pred HHHHHhcCCHHHHHHHHHHhCCCcc
Confidence 6778888899999999999999875
No 230
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=29.50 E-value=2.1e+02 Score=20.27 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=28.8
Q ss_pred chhHHHHH--HHHHHHHHHHHHHHhhhccC---------------CchHHHHHHHHHHHHHHHHHH
Q 034652 32 TGLLPIYF--IVSLGCYGLLMVGIGLMYFP---------------TCPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 32 ~~~lP~~~--lv~fG~Ysl~~vgy~v~tFn---------------DcpeA~~eL~~eI~eAk~dL~ 80 (88)
-+.+|+|. +++|-.|-+..+--+=-+=+ .-...-++||+..+|-.+.+.
T Consensus 83 ~~imPlYtiGI~~f~lY~l~Ki~~~k~~~~~~~~~~~~~~~~~~~~~~~eL~qLq~rL~qTE~~m~ 148 (152)
T PF15361_consen 83 GQIMPLYTIGIVLFILYTLFKIKKKKDSPRERKSSTERKGNTKRKITDYELAQLQERLAQTERAME 148 (152)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 47899986 67778887777653322100 112345567777776665543
No 231
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=29.48 E-value=1.6e+02 Score=19.04 Aligned_cols=59 Identities=31% Similarity=0.446 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHh---cccCccccchhHHHH-HHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHH
Q 034652 11 LVAITALWFGLLQ---TSVIPRSHTGLLPIY-FIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYL 79 (88)
Q Consensus 11 ~~~l~~~w~~l~~---~~l~p~~~~~~lP~~-~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL 79 (88)
+.++.++|++.-- .+-+| .+|-. =++.+| |+ +|-+.+.==..|.-+||.++|++-|++.
T Consensus 26 i~~iv~l~v~~~vl~aIn~iP-----ll~~llElvGlg-yt----~wF~~ryLL~~~~R~el~~~i~~~k~~i 88 (90)
T PF14159_consen 26 IAVIVALWVSAAVLDAINSIP-----LLPGLLELVGLG-YT----GWFVYRYLLFAENRQELLQKIQSLKKEI 88 (90)
T ss_pred HHHHHHHHHHHHHHHHHHcCc-----chHHHHHHHHHH-HH----hHHHHHHHcChHhHHHHHHHHHHHHHHh
Confidence 3446777777642 12244 55443 355555 33 3333333345788999999999888764
No 232
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=29.34 E-value=69 Score=18.63 Aligned_cols=19 Identities=11% Similarity=0.371 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 034652 39 FIVSLGCYGLLMVGIGLMY 57 (88)
Q Consensus 39 ~lv~fG~Ysl~~vgy~v~t 57 (88)
+.++++|-.++..||++.|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYt 25 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYT 25 (43)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 4567778888888888876
No 233
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=29.30 E-value=50 Score=20.71 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
+++++..+.|+++|+++.
T Consensus 69 ~dl~~~~~~l~~~Gv~~~ 86 (120)
T cd07252 69 AALDALAARLRAAGVAVE 86 (120)
T ss_pred HHHHHHHHHHHHcCCeEE
Confidence 578999999999998764
No 234
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=29.19 E-value=63 Score=20.08 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
++++++.+.++++|+++
T Consensus 74 ~~v~~~~~~l~~~G~~~ 90 (121)
T cd09013 74 EALERRVAALEASGLGI 90 (121)
T ss_pred HHHHHHHHHHHHcCCcc
Confidence 57889999999999876
No 235
>PRK12338 hypothetical protein; Provisional
Probab=29.19 E-value=55 Score=25.98 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCCccCC
Q 034652 70 QDIKEAKEYLERKGIDVSE 88 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d~ 88 (88)
+.+++++++|+++|+-+++
T Consensus 297 e~l~~i~~~L~~~G~L~~~ 315 (319)
T PRK12338 297 ESLNRIIEELEEEGLLYEE 315 (319)
T ss_pred HHHHHHHHHHHHCCccccC
Confidence 5788889999999987653
No 236
>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]
Probab=29.18 E-value=56 Score=22.02 Aligned_cols=17 Identities=35% Similarity=0.386 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034652 64 EALLLQQDIKEAKEYLE 80 (88)
Q Consensus 64 A~~eL~~eI~eAk~dL~ 80 (88)
.-.|+++.++|||++|-
T Consensus 48 Dp~e~~~l~~eakk~Le 64 (94)
T KOG3801|consen 48 DPAEIKKLYKEAKKQLE 64 (94)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44678888999999884
No 237
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.13 E-value=85 Score=24.90 Aligned_cols=29 Identities=28% Similarity=0.435 Sum_probs=20.8
Q ss_pred cCCchHHHHHHH----------------------------HHHHHHHHHHHhcCCcc
Q 034652 58 FPTCPQEALLLQ----------------------------QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 58 FnDcpeA~~eL~----------------------------~eI~eAk~dL~~kG~~~ 86 (88)
+||-+|.+++|- ++|++.++-|+++|+.+
T Consensus 266 vNDs~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~v 322 (345)
T PRK14457 266 VNDLPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAV 322 (345)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 688888777775 56777777777777654
No 238
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=29.05 E-value=55 Score=26.56 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034652 63 QEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~ 80 (88)
+++++|.+||++||+-+.
T Consensus 9 ~Eae~L~~qi~~~r~~~~ 26 (343)
T KOG0286|consen 9 QEAEQLKNQIRDARKKLN 26 (343)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 678899999999998664
No 239
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=28.98 E-value=64 Score=22.34 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=28.6
Q ss_pred HHHHHhhhccCCchHHHHHHHHHHH-HHHHHHHhcCCccCC
Q 034652 49 LMVGIGLMYFPTCPQEALLLQQDIK-EAKEYLERKGIDVSE 88 (88)
Q Consensus 49 ~~vgy~v~tFnDcpeA~~eL~~eI~-eAk~dL~~kG~~~d~ 88 (88)
.+=.-|=+|..|....-.++.++|+ +.++++...|+.++|
T Consensus 102 lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~ 142 (196)
T cd03401 102 LKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDD 142 (196)
T ss_pred HHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 3333455666777777788888876 667789999998764
No 240
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=28.93 E-value=80 Score=22.82 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccCC
Q 034652 63 QEALLLQQDIKEAKEYLERKGIDVSE 88 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~kG~~~d~ 88 (88)
+.++|+-++.++-++.+|+.|.+.++
T Consensus 115 ~~~eev~~~~~~l~~~~~~lG~~~~~ 140 (171)
T PF13382_consen 115 LPAEEVARQLEELEEALRELGCPFDD 140 (171)
T ss_dssp S-HHHHHHHHHHHHHHHHTTS-BTTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 44677778888888999999988764
No 241
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.89 E-value=79 Score=23.07 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 63 QEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
++-.||.+||.|-|+.=++.|+.-|
T Consensus 41 ~e~~el~~Qi~erkEqqKKaGv~dd 65 (169)
T KOG3799|consen 41 KEMGELSQQIQERKEQQKKAGVGDD 65 (169)
T ss_pred HHHHHHHHHHHHHHHHhhccccCcC
Confidence 3455788999999999999888655
No 242
>PHA02277 hypothetical protein
Probab=28.87 E-value=94 Score=22.34 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=25.0
Q ss_pred HHHHhhhccCCchHHH-HHHHHHHHHHHHHHHhcC
Q 034652 50 MVGIGLMYFPTCPQEA-LLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 50 ~vgy~v~tFnDcpeA~-~eL~~eI~eAk~dL~~kG 83 (88)
.++-.+.-.||.-||| +|-|++|+||+..=..|.
T Consensus 98 k~~KA~~kln~k~eay~ke~qe~~~~~q~~e~~~~ 132 (150)
T PHA02277 98 KVGKAKDKLNEKREAYLKEKQEELRQKQQEEAQKK 132 (150)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566778899999998 577778988876554443
No 243
>PRK12672 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=28.74 E-value=93 Score=21.21 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCc
Q 034652 37 IYFIVSLGCYGLLMVGIGLMYFPTC 61 (88)
Q Consensus 37 ~~~lv~fG~Ysl~~vgy~v~tFnDc 61 (88)
.+.++..|+.....=..|+.+|+|-
T Consensus 7 ~~ill~~G~~f~l~gaiGllR~PD~ 31 (118)
T PRK12672 7 IYIFLAIGVTFNLLGSIALHRFPDV 31 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccH
Confidence 4567777777777778888888883
No 244
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.59 E-value=91 Score=25.00 Aligned_cols=13 Identities=15% Similarity=-0.169 Sum_probs=9.9
Q ss_pred ccCCchHHHHHHH
Q 034652 57 YFPTCPQEALLLQ 69 (88)
Q Consensus 57 tFnDcpeA~~eL~ 69 (88)
-+||-+|.+++|-
T Consensus 273 GvNDs~e~a~~La 285 (356)
T PRK14462 273 DVNDDLKSAKKLV 285 (356)
T ss_pred CCCCCHHHHHHHH
Confidence 4688888888775
No 245
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=28.50 E-value=86 Score=21.63 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034652 65 ALLLQQDIKEAKEYLER 81 (88)
Q Consensus 65 ~~eL~~eI~eAk~dL~~ 81 (88)
.++|++|.++|.+.|++
T Consensus 106 i~~L~~E~~~~~~el~~ 122 (144)
T PF11221_consen 106 IKELEEENEEAEEELQE 122 (144)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555443
No 246
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=28.41 E-value=56 Score=20.50 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
++++++.+.|+++|+++
T Consensus 69 ~dl~~~~~~l~~~G~~~ 85 (123)
T cd08351 69 EEFDRIFARIRERGIDY 85 (123)
T ss_pred HHHHHHHHHHHHcCCce
Confidence 47899999999999875
No 247
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=28.31 E-value=2.6e+02 Score=21.21 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=4.5
Q ss_pred cCCchHH
Q 034652 58 FPTCPQE 64 (88)
Q Consensus 58 FnDcpeA 64 (88)
|+|.+++
T Consensus 72 fPe~s~~ 78 (308)
T PRK06553 72 FPEKSEA 78 (308)
T ss_pred CCCCCHH
Confidence 7776544
No 248
>PRK12674 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=28.16 E-value=82 Score=20.66 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCc
Q 034652 37 IYFIVSLGCYGLLMVGIGLMYFPTC 61 (88)
Q Consensus 37 ~~~lv~fG~Ysl~~vgy~v~tFnDc 61 (88)
.+.++..|+.....=..|+.+|+|-
T Consensus 7 ~~~ll~~G~~f~~~gaiGllR~pD~ 31 (99)
T PRK12674 7 VSVLLLLGAFFALVGAIGLVRLPDV 31 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccH
Confidence 3567888888888889999999883
No 249
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=28.09 E-value=51 Score=19.54 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=14.1
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+.+++.||-.. .+|..|..+|+++
T Consensus 4 Ly~~~~sp~~~--------kv~~~L~~~gi~y 27 (77)
T cd03041 4 LYEFEGSPFCR--------LVREVLTELELDV 27 (77)
T ss_pred EecCCCCchHH--------HHHHHHHHcCCcE
Confidence 45677777543 3455566666554
No 250
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=28.08 E-value=36 Score=21.76 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
.+++++.+.|+++|+++.
T Consensus 96 ~d~d~~~~~l~~~G~~~~ 113 (142)
T cd08353 96 DDIDARVARLRKHGAELV 113 (142)
T ss_pred CCHHHHHHHHHHCCCcee
Confidence 468889999999998864
No 251
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.97 E-value=81 Score=24.68 Aligned_cols=26 Identities=15% Similarity=0.228 Sum_probs=22.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHhc-CCc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERK-GID 85 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~k-G~~ 85 (88)
|+.+-++++++||++.=+.|+++ |++
T Consensus 5 dGk~iA~~i~~~l~~~v~~l~~~~g~~ 31 (286)
T PRK14184 5 DGKATAATIREELKTEVAALTARHGRA 31 (286)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 78889999999999999999888 653
No 252
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=27.96 E-value=77 Score=20.19 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=18.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 59 PTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
.+||-...++ .++++..+.++++|+.+
T Consensus 34 ~~cp~C~~~~-~~l~~~~~~~~~~~~~v 60 (140)
T cd03017 34 DDTPGCTKEA-CDFRDLYEEFKALGAVV 60 (140)
T ss_pred CCCCchHHHH-HHHHHHHHHHHHCCCEE
Confidence 4566565554 46777778888888754
No 253
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.63 E-value=1.4e+02 Score=19.34 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=15.5
Q ss_pred hhccCCchHHHHHHHHHHHHHHH
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKE 77 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~ 77 (88)
+----||||--++.++..+++++
T Consensus 41 i~K~CdC~~pCDt~~~kl~~~~e 63 (77)
T COG2991 41 IEKVCDCDEPCDTHKKKLDAGKE 63 (77)
T ss_pred cchhcCCCCchHHHHHhHHhhhh
Confidence 34455899888888877644443
No 254
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=27.35 E-value=76 Score=21.51 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 034652 34 LLPIYFIVSLGCYGLLMVGIGL 55 (88)
Q Consensus 34 ~lP~~~lv~fG~Ysl~~vgy~v 55 (88)
-.|||++..|.+-++..++++|
T Consensus 65 S~~F~L~~~~ti~lv~~~~~~I 86 (103)
T PF12955_consen 65 SVPFWLFAGFTIALVVLVAGAI 86 (103)
T ss_pred cchhhHHHHHHHHHHHHHHHHH
Confidence 4577777777777666666655
No 255
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=27.32 E-value=78 Score=22.72 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034652 63 QEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~ 80 (88)
|..+.|+.++.|+|++|.
T Consensus 89 ~~~E~L~d~v~eLkeel~ 106 (146)
T PF05852_consen 89 EDLEKLTDRVEELKEELE 106 (146)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677888888888888875
No 256
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=27.28 E-value=60 Score=27.69 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=20.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
|||.|.+ |.++|++-=+--|+|||-+
T Consensus 268 F~da~ka---ll~~ieqvvrLIRSKGVGv 293 (502)
T PF05872_consen 268 FNDAPKA---LLDKIEQVVRLIRSKGVGV 293 (502)
T ss_pred hcCCCHH---HHHHHHHHHHHhhccCceE
Confidence 7777765 5668888889999999853
No 257
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=27.19 E-value=1.2e+02 Score=19.30 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=20.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
|.+.=-+.+++.|+++++.+++.|..+
T Consensus 6 ~i~~l~~r~~~ai~~~~~~~~~~~~~v 32 (91)
T PF09793_consen 6 DIERLQKRLRKAIEEAKRKLSSIGPGV 32 (91)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444455678889999999999877655
No 258
>PRK12670 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=27.17 E-value=87 Score=20.72 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCc
Q 034652 38 YFIVSLGCYGLLMVGIGLMYFPTC 61 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tFnDc 61 (88)
+.++..|+.....=.+|+.+|+|.
T Consensus 7 ~~ll~~G~~f~l~g~iGllR~pD~ 30 (99)
T PRK12670 7 MITLGLGIFLIVISVIGVIRFPDF 30 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccH
Confidence 456777887777778888888883
No 259
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=27.11 E-value=61 Score=23.37 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=22.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
-..+||+-|...+..|+-+|.-+|++++
T Consensus 56 ~IN~AY~~L~~p~~Ra~YlL~l~g~~~~ 83 (173)
T PRK00294 56 SLNEAYQTLKSPPRRARYLLALSGHEVP 83 (173)
T ss_pred HHHHHHHHhCChhhhHHHHHHhcCCCCC
Confidence 3457888888888999999999998764
No 260
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=27.10 E-value=45 Score=23.62 Aligned_cols=24 Identities=38% Similarity=0.798 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccC
Q 034652 36 PIYFIVSLGCYGLLMVGIGLMYFP 59 (88)
Q Consensus 36 P~~~lv~fG~Ysl~~vgy~v~tFn 59 (88)
=+|.|+..|.|+.+++|.-+-+.+
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvR 67 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVR 67 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999998877654
No 261
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=27.02 E-value=84 Score=23.08 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHH
Q 034652 35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDI 72 (88)
Q Consensus 35 lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI 72 (88)
..+|.|+.+...+++.+.++.+.|+-....-+++.+++
T Consensus 15 ~vm~~Ll~~Sii~~aviieR~~~~~~~~~~~~~~~~~~ 52 (215)
T TIGR02796 15 LVMLILLLASIISWAIIFQKFFIFRRARREAEEFEDRF 52 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35788888899999999999888876554444444443
No 262
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=26.90 E-value=69 Score=20.66 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhcCCccC
Q 034652 66 LLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 66 ~eL~~eI~eAk~dL~~kG~~~d 87 (88)
.+..++=++.|.-|.+||++++
T Consensus 13 ~~~k~~~~~v~~lL~~k~I~f~ 34 (92)
T cd03030 13 TEIKKRQQEVLGFLEAKKIEFE 34 (92)
T ss_pred HHHHHHHHHHHHHHHHCCCceE
Confidence 4566777888899999998875
No 263
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=26.89 E-value=73 Score=18.82 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 034652 38 YFIVSLGCYGLLMVGIGLMYF 58 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tF 58 (88)
.+.+.++|-.++..||++.|=
T Consensus 9 ~~~i~i~~lL~~~TgyaiYta 29 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTA 29 (46)
T ss_pred HHHHHHHHHHHHHhhheeeec
Confidence 345677888888999999873
No 264
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.87 E-value=86 Score=24.46 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 59 PTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
=|+.+-++++.+++++.-+.|+++|++
T Consensus 6 l~Gk~ia~~i~~~~~~~v~~l~~~g~~ 32 (286)
T PRK14175 6 LDGKQIAKDYRQGLQDQVEALKEKGFT 32 (286)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 378889999999999999999998864
No 265
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=26.77 E-value=38 Score=20.75 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCcc
Q 034652 71 DIKEAKEYLERKGIDV 86 (88)
Q Consensus 71 eI~eAk~dL~~kG~~~ 86 (88)
+|+++.+.++++|+++
T Consensus 76 did~~~~~l~~~G~~~ 91 (119)
T cd08359 76 DVDAEYERLKAEGLPI 91 (119)
T ss_pred CHHHHHHHHHhcCCCe
Confidence 6888889999999875
No 266
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.74 E-value=72 Score=19.59 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
++++++.+.|+++|+++.
T Consensus 76 ~~v~~~~~~l~~~g~~~~ 93 (125)
T cd07255 76 ADLAAALRRLIELGIPLV 93 (125)
T ss_pred HHHHHHHHHHHHcCCcee
Confidence 468888888888888653
No 267
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.66 E-value=1.2e+02 Score=22.46 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHH
Q 034652 34 LLPIYFIVSLGC 45 (88)
Q Consensus 34 ~lP~~~lv~fG~ 45 (88)
++|+++++..+.
T Consensus 246 ~~~~~~~~~~~~ 257 (262)
T PF14257_consen 246 WLPLILIIGLLV 257 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555554444433
No 268
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=26.59 E-value=1.5e+02 Score=19.91 Aligned_cols=33 Identities=6% Similarity=-0.188 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhhcc---CC-chHHHHHHHHHHHH
Q 034652 42 SLGCYGLLMVGIGLMYF---PT-CPQEALLLQQDIKE 74 (88)
Q Consensus 42 ~fG~Ysl~~vgy~v~tF---nD-cpeA~~eL~~eI~e 74 (88)
.+.++..+.+.+++.+| |= -|+..++..+...|
T Consensus 70 g~~~~~ia~li~~v~~~i~~~~IdP~~~~~~~~~~~~ 106 (163)
T PF13858_consen 70 GFLISLIAGLISAVFQYIYFNYIDPDFFENYIEAQIE 106 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 33444444444444332 22 46666666555433
No 269
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=26.58 E-value=88 Score=22.00 Aligned_cols=23 Identities=13% Similarity=0.393 Sum_probs=21.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~k 82 (88)
=||+-+++..++-+..|++||++
T Consensus 20 iCp~C~~~~e~~f~kV~~yLr~~ 42 (137)
T TIGR03826 20 VCPSCYEEEEREFEKVYKFLRKH 42 (137)
T ss_pred cCHHHhHHHHHHHHHHHHHHHHC
Confidence 39999999999999999999965
No 270
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=26.43 E-value=71 Score=19.74 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034652 65 ALLLQQDIKEAKEYLER 81 (88)
Q Consensus 65 ~~eL~~eI~eAk~dL~~ 81 (88)
.+||++++.|.|++|-.
T Consensus 14 ~~eL~~~l~elk~eLf~ 30 (69)
T PRK14549 14 PEEREEKLEELKLELLK 30 (69)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37888999999888753
No 271
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=26.40 E-value=73 Score=24.95 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=22.6
Q ss_pred HHHHHhhhccCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 49 LMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 49 ~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+.++=++|.|+-+ .|.|.|+.|+++|+.+
T Consensus 225 AaLAAsiFH~~~~---------~i~evK~yL~~~gi~V 253 (256)
T COG0107 225 AALAASIFHFGEI---------TIGEVKEYLAEQGIEV 253 (256)
T ss_pred HHHhhhhhhcCcc---------cHHHHHHHHHHcCCCc
Confidence 3455567777765 6999999999999986
No 272
>TIGR01300 CPA3_mnhG_phaG monovalent cation/proton antiporter, MnhG/PhaG subunit. This model represents a subfamily of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti, show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons.
Probab=26.34 E-value=75 Score=20.92 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCc
Q 034652 40 IVSLGCYGLLMVGIGLMYFPTC 61 (88)
Q Consensus 40 lv~fG~Ysl~~vgy~v~tFnDc 61 (88)
++..|+.....=..|+.+|+|-
T Consensus 2 ll~~G~~f~l~g~iGllR~pD~ 23 (97)
T TIGR01300 2 LLLIGAFFTLLGAIGLVRFPDV 23 (97)
T ss_pred hHHHHHHHHHHHHHHHHhCCcH
Confidence 4567787777788889999883
No 273
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.33 E-value=88 Score=24.65 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 59 PTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
=|+.+-++++++++++.-+.|++||++
T Consensus 7 l~Gk~iA~~i~~~lk~~i~~l~~~g~~ 33 (301)
T PRK14194 7 IDGKAAAARVLAQVREDVRTLKAAGIE 33 (301)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 378889999999999999999998864
No 274
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=26.31 E-value=1.3e+02 Score=16.91 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHH
Q 034652 38 YFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDI 72 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI 72 (88)
|...++|+-.+..++--+.+..+--...++|+++.
T Consensus 6 yVW~sYg~t~~~l~~l~~~~~~~~r~~~~~l~~~~ 40 (46)
T PF04995_consen 6 YVWSSYGVTALVLAGLIVWSLRRRRRLRKELKRLE 40 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666666677777777776643
No 275
>PRK08378 hypothetical protein; Provisional
Probab=26.24 E-value=1.8e+02 Score=19.34 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccCccccchhHHHHHHHHHHHHHHH-HHHHhhhccCCc
Q 034652 6 KILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLL-MVGIGLMYFPTC 61 (88)
Q Consensus 6 ~~l~~~~~l~~~w~~l~~~~l~p~~~~~~lP~~~lv~fG~Ysl~-~vgy~v~tFnDc 61 (88)
..+..+.++...|..+...++ +-+++.||.||+. .+.|-++.=+|.
T Consensus 8 ~~iLl~~ll~~A~~~v~~rdL----------l~avi~~~~~sll~al~~~~L~APDV 54 (93)
T PRK08378 8 QYIILALMIISAILAVEWRDL----------LAAAVGMAAVSLFASLEFFMLQAPDV 54 (93)
T ss_pred HHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 344444555555555543333 3467788888765 355555555553
No 276
>COG1659 Uncharacterized protein, linocin/CFP29 homolog [Function unknown]
Probab=26.23 E-value=55 Score=25.56 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhhccC-----CchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 40 IVSLGCYGLLMVGIGLMYFP-----TCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 40 lv~fG~Ysl~~vgy~v~tFn-----DcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
++.+||=..+.= |+++|+ .|+|.-.++.+.|..|-..|+++|++
T Consensus 119 ~If~G~~~~Gie--G~Lsa~~~~~l~~~e~p~~~~~~iV~alS~l~~~G~~ 167 (267)
T COG1659 119 TIFEGYSAAGIE--GILSASSNPALTLPEDPREIPDVIVQALSELRLAGVD 167 (267)
T ss_pred heeecchhhccc--eeeccCCCccccCccccchHHHHHHHHHHHHHHcccC
Confidence 344565554443 445554 48999999999999999999999985
No 277
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=26.18 E-value=40 Score=20.17 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCccCC
Q 034652 73 KEAKEYLERKGIDVSE 88 (88)
Q Consensus 73 ~eAk~dL~~kG~~~d~ 88 (88)
+|.|..||.-++++|+
T Consensus 5 ~Evk~lLk~~NI~~~~ 20 (51)
T PF14788_consen 5 KEVKKLLKMMNIEMDD 20 (51)
T ss_dssp HHHHHHHHHTT----H
T ss_pred HHHHHHHHHHccCcCH
Confidence 6889999999988874
No 278
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=26.15 E-value=2.9e+02 Score=21.50 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=5.1
Q ss_pred ChHHHHHH
Q 034652 1 MKHVVKIL 8 (88)
Q Consensus 1 M~r~~~~l 8 (88)
|+|+.-.+
T Consensus 1 M~~~~~~~ 8 (409)
T TIGR00540 1 MFKVLFLF 8 (409)
T ss_pred ChHHHHHH
Confidence 77777543
No 279
>COG5085 Predicted membrane protein [Function unknown]
Probab=26.12 E-value=2.4e+02 Score=21.76 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhccCC----chHHHHHHHHHHHHHHHHHHhc
Q 034652 40 IVSLGCYGLLMVGIGLMYFPT----CPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 40 lv~fG~Ysl~~vgy~v~tFnD----cpeA~~eL~~eI~eAk~dL~~k 82 (88)
+.++++|.+..+..|+- || -+.--.|+|.||+++|+.+...
T Consensus 94 v~~iilyf~~kfi~glQ--nDv~~k~e~rk~e~q~q~a~ck~~Yl~n 138 (230)
T COG5085 94 VIGIILYFVVKFIVGLQ--NDVGYKMESRKAEIQHQIAECKTSYLIN 138 (230)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888877776664 45 3556679999999999988754
No 280
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=26.12 E-value=2.4e+02 Score=21.76 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhccCC----chHHHHHHHHHHHHHHHHHHhc
Q 034652 40 IVSLGCYGLLMVGIGLMYFPT----CPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 40 lv~fG~Ysl~~vgy~v~tFnD----cpeA~~eL~~eI~eAk~dL~~k 82 (88)
+.++++|.+..+..|+- || -+.--.|+|.||+++|+.+...
T Consensus 94 v~~iilyf~~kfi~glQ--nDv~~k~e~rk~e~q~q~a~ck~~Yl~n 138 (230)
T KOG4503|consen 94 VIGIILYFVVKFIVGLQ--NDVGYKMESRKAEIQHQIAECKTSYLIN 138 (230)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888877776664 45 3556679999999999988754
No 281
>cd06576 PASTA_Pbp2x-like_1 PASTA domain of PBP2x-like proteins, first repeat. Penicillin-binding proteins (PBPs) are the major targets for beta-lactam antibiotics, like penicillins and cephalosporins. Beta-lactam antibiotics specifically inhibit transpeptidase activity by acylating the active site serine. PBPs catalyze key steps in the synthesis of the peptidoglycan, such as the interconnecting of glycan chains (polymers of N-glucosamine and N-acetylmuramic acid residues) and the cross-linking (transpeptidation) of short stem peptides, which are connected to glycan chains. Peptidoglycan is essential in cell division and protects bacteria from osmotic shock and lysis. PBP2x is one of the two monofunctional high molecular mass PBPs in Streptococcus pneumoniae and has been seen as the primary PBP target in beta-lactam-resistant strains. The PASTA domain is found at the C-termini of several PBPs and bacterial serine/threonine kinases. The name PASTA is derived from PBP and Serine/Threonine
Probab=26.09 E-value=57 Score=17.40 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
...++|++.|+++|+.+
T Consensus 8 ~~~~~a~~~l~~~g~~~ 24 (55)
T cd06576 8 KSVEEAKKELKEAGLQP 24 (55)
T ss_pred CCHHHHHHHHHHCCCEE
Confidence 35678999999998865
No 282
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.08 E-value=1.6e+02 Score=18.97 Aligned_cols=28 Identities=7% Similarity=0.113 Sum_probs=21.0
Q ss_pred hhhccCCchHHHHHHHHHHHHHHHHHHh
Q 034652 54 GLMYFPTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 54 ~v~tFnDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
+++.-.|++||...|.+.+++....+++
T Consensus 54 ~vfv~~~~~ea~~~Le~~~e~le~~i~~ 81 (105)
T cd00632 54 NVLVKQEKEEARTELKERLETIELRIKR 81 (105)
T ss_pred hHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4777889999998888877766665543
No 283
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=25.90 E-value=1.1e+02 Score=19.59 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=25.6
Q ss_pred hhccCCchHHHHHHHHHHHHHH-----HHHHhcCCccCC
Q 034652 55 LMYFPTCPQEALLLQQDIKEAK-----EYLERKGIDVSE 88 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk-----~dL~~kG~~~d~ 88 (88)
+=.+||..|+.+.|.+-|.+.| +-+++-|++.+|
T Consensus 45 LheYNeiKD~gQ~Lig~iA~~rgvt~~~v~~e~gl~~~D 83 (83)
T PF07061_consen 45 LHEYNEIKDIGQGLIGLIADQRGVTVKDVYEEFGLDMND 83 (83)
T ss_pred HHHHhHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCCCC
Confidence 3468999999999999998864 556666666654
No 284
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.89 E-value=92 Score=24.39 Aligned_cols=26 Identities=15% Similarity=0.150 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
|+.+-+++++++|++.=+.|+++|++
T Consensus 6 ~Gk~iA~~i~~~ik~~i~~l~~~g~~ 31 (284)
T PRK14170 6 DGKKLAKEIQEKVTREVAELVKEGKK 31 (284)
T ss_pred EhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67888999999999999999998864
No 285
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=25.80 E-value=79 Score=19.74 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
+++.++.+.++++|+++.
T Consensus 68 ~dl~~~~~~l~~~G~~~~ 85 (121)
T cd07244 68 EDFASLKEKLRQAGVKEW 85 (121)
T ss_pred HHHHHHHHHHHHcCCccc
Confidence 478888999999998763
No 286
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=25.79 E-value=1.1e+02 Score=20.87 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=25.3
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCCccCC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGIDVSE 88 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d~ 88 (88)
..+--.++.+++..++++.-+.+.+.|+.+.|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd 75 (120)
T PF09969_consen 44 EVNGLEAELEELEARLRELIDEIEELGVEVKD 75 (120)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeC
Confidence 34556677788889999999999999987653
No 287
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=25.78 E-value=21 Score=28.94 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=26.2
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
++|.||..|-+|--.+..-|++.|++++.+
T Consensus 59 as~~ncKkALee~~gDl~~A~~~L~k~aqk 88 (340)
T KOG1071|consen 59 ASMVNCKKALEECGGDLVLAEEWLHKKAQK 88 (340)
T ss_pred CcHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 368899999999999999999999998754
No 288
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=25.77 E-value=62 Score=21.09 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=16.8
Q ss_pred HHHHHHHHHH-HHHHHHhcCCccCC
Q 034652 65 ALLLQQDIKE-AKEYLERKGIDVSE 88 (88)
Q Consensus 65 ~~eL~~eI~e-Ak~dL~~kG~~~d~ 88 (88)
.+++.+++++ .++++++.|+.++|
T Consensus 116 r~~i~~~v~~~l~~~~~~~Gi~i~~ 140 (160)
T smart00244 116 REKISENIREELNERAEAWGIEVED 140 (160)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4556666653 36788899998764
No 289
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=25.56 E-value=72 Score=21.52 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 034652 67 LLQQDIKEAKEYLE 80 (88)
Q Consensus 67 eL~~eI~eAk~dL~ 80 (88)
+|++++.+||..++
T Consensus 99 ~lk~~L~~ak~~r~ 112 (139)
T PF05615_consen 99 ELKEELEEAKRVRQ 112 (139)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 290
>PRK08311 putative RNA polymerase sigma factor SigI; Reviewed
Probab=25.55 E-value=68 Score=24.01 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccCC
Q 034652 64 EALLLQQDIKEAKEYLERKGIDVSE 88 (88)
Q Consensus 64 A~~eL~~eI~eAk~dL~~kG~~~d~ 88 (88)
...|..+||.+=++.|+.=|++++|
T Consensus 126 ~~~~~~~ei~~~~~~L~~~gi~~~d 150 (237)
T PRK08311 126 ENEERREEIEEFKKELKEFGITFED 150 (237)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 3456889999999999999999864
No 291
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=25.51 E-value=55 Score=19.65 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=16.7
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
++=..||-. ..||+.|+++|++++
T Consensus 13 y~~~~Cp~C--------~~ak~~L~~~gi~y~ 36 (79)
T TIGR02190 13 FTKPGCPFC--------AKAKATLKEKGYDFE 36 (79)
T ss_pred EECCCCHhH--------HHHHHHHHHcCCCcE
Confidence 344566654 468888889998864
No 292
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=25.41 E-value=73 Score=20.83 Aligned_cols=17 Identities=24% Similarity=0.032 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034652 65 ALLLQQDIKEAKEYLER 81 (88)
Q Consensus 65 ~~eL~~eI~eAk~dL~~ 81 (88)
.+||++++.+.|++|-.
T Consensus 10 ~eEL~e~L~elkkELf~ 26 (87)
T PRK00461 10 VEELEKLVIELKAELFT 26 (87)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36888888888887743
No 293
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.34 E-value=97 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=23.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 59 PTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
=|+.+-++++++|+++.-+.|+++|++
T Consensus 6 l~Gk~vA~~i~~~l~~~v~~l~~~g~~ 32 (284)
T PRK14190 6 IDGKEVAKEKREQLKEEVVKLKEQGIV 32 (284)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 367889999999999999999988864
No 294
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=25.27 E-value=62 Score=22.74 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
-..+||+-|...++.|.-.|.-+|++++
T Consensus 41 ~iN~AY~~L~~p~~Ra~ylL~l~g~~~~ 68 (157)
T TIGR00714 41 TLNQAYQTLKDPLMRAEYMLSLHGIDLA 68 (157)
T ss_pred HHHHHHHHhCChhhhHHHHHHhcCCCCC
Confidence 4467888888888999999999998764
No 295
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=25.13 E-value=1.1e+02 Score=21.77 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC--chHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 36 PIYFIVSLGCYGLLMVGIGLMYFPT--CPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 36 P~~~lv~fG~Ysl~~vgy~v~tFnD--cpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
=.|++-..+-++=.++-+.--..-. .|+++.++++++.+--+..|+.++.
T Consensus 74 ~~~~~~L~lNvtP~~v~~~~~~Ll~~v~p~~~~~~k~~L~~~a~~ik~~~iS 125 (187)
T PF05309_consen 74 GRYVAQLLLNVTPENVDFQFDSLLPYVDPSAYGELKKQLDEEAEQIKKNNIS 125 (187)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHhCCce
Confidence 4455556666666677776666644 7999999999999888888888764
No 296
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=25.11 E-value=2e+02 Score=19.23 Aligned_cols=39 Identities=15% Similarity=-0.003 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHH
Q 034652 39 FIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEY 78 (88)
Q Consensus 39 ~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~d 78 (88)
.-+-..|..+-.+|+-+.. +|+|++.+++.+.++.++.+
T Consensus 138 ~~ve~l~~lL~~~G~~l~~-~~~~~~~~~~l~~l~~~~~~ 176 (200)
T smart00543 138 FSVECLLSLLPTCGKDLER-EKSPKLLDEILERLQDYLLK 176 (200)
T ss_pred HHHHHHHHHHHHhhHHHcC-cccHHHHHHHHHHHHHHHhc
Confidence 3455667777788888777 89999999999999988765
No 297
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=25.10 E-value=52 Score=26.38 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhcCCcc
Q 034652 67 LLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 67 eL~~eI~eAk~dL~~kG~~~ 86 (88)
|=..||.|+=+|||+.|+|+
T Consensus 225 Et~~Ev~e~m~DLr~~gvdi 244 (306)
T COG0320 225 ETDEEVIEVMDDLRSAGVDI 244 (306)
T ss_pred CcHHHHHHHHHHHHHcCCCE
Confidence 34579999999999999986
No 298
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=25.07 E-value=1e+02 Score=19.61 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 59 PTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
..||-..+|+ .++++..++++++|+.+
T Consensus 34 ~~Cp~C~~~~-~~l~~~~~~~~~~~v~v 60 (149)
T cd02970 34 FGCPFCREYL-RALSKLLPELDALGVEL 60 (149)
T ss_pred CCChhHHHHH-HHHHHHHHHHHhcCeEE
Confidence 4799888886 45788888888888764
No 299
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=24.98 E-value=99 Score=23.04 Aligned_cols=27 Identities=7% Similarity=-0.066 Sum_probs=21.0
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHhc
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~dL~~k 82 (88)
...=+++|.++++.+++++.-++++++
T Consensus 158 g~~lg~e~~A~~l~~~~~~~i~~~~~~ 184 (317)
T PRK10957 158 GEATGLEKQAAAVIAQFDAQLAEVKAK 184 (317)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHhh
Confidence 334578889999998888888888765
No 300
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.87 E-value=1.2e+02 Score=23.99 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
+++++.++-|+++|+++
T Consensus 302 e~l~~f~~~l~~~gi~v 318 (342)
T PRK14454 302 EKIKKFKNILKKNGIET 318 (342)
T ss_pred HHHHHHHHHHHHCCCcE
Confidence 46666777777777654
No 301
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=24.80 E-value=78 Score=23.63 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=25.3
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~ 84 (88)
.|||+++....+-.+++|.++.+++.|.
T Consensus 205 ~~n~l~~~~~~~~p~l~~i~~~l~~~Ga 232 (276)
T PRK14612 205 YWNSLEGPVFARHPELQEVLAALRAAGL 232 (276)
T ss_pred ccCCcHHHHHHhChHHHHHHHHHHhCCC
Confidence 5899999998999999999999999885
No 302
>PRK12452 cardiolipin synthetase; Reviewed
Probab=24.79 E-value=47 Score=27.53 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=17.5
Q ss_pred ccCCchHHHHHHHHHHHHHHH
Q 034652 57 YFPTCPQEALLLQQDIKEAKE 77 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~ 77 (88)
-|.|.+|+++++.++|++||+
T Consensus 144 ll~~g~~~~~~l~~~I~~Ak~ 164 (509)
T PRK12452 144 LLTNGDQTFSEILQAIEQAKH 164 (509)
T ss_pred EeCCHHHHHHHHHHHHHHhCC
Confidence 355677999999999999985
No 303
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=24.69 E-value=83 Score=23.63 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=24.8
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~ 84 (88)
..||.++...++..++.|.|+.+++.|-
T Consensus 214 ~~nD~e~~~~~l~p~l~~v~~~~~~~Ga 241 (287)
T PRK14616 214 FENDFESAVFDHYPAVRKVKDDLLEAGS 241 (287)
T ss_pred hcCccHHHHHHhChHHHHHHHHHHhCCC
Confidence 3699988999999999999999998884
No 304
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=24.68 E-value=1.1e+02 Score=24.20 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
++|++.++.|+++|+++
T Consensus 309 e~i~~f~~~L~~~gi~v 325 (355)
T TIGR00048 309 EQIDRFAKTLMSYGFTV 325 (355)
T ss_pred HHHHHHHHHHHHCCCeE
Confidence 67888888888888765
No 305
>CHL00020 psbN photosystem II protein N
Probab=24.55 E-value=68 Score=18.71 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 034652 38 YFIVSLGCYGLLMVGIGLMYF 58 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tF 58 (88)
.+.+.++|-.++..||++.|=
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYta 26 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTA 26 (43)
T ss_pred hHHHHHHHHHHHhhheeeeec
Confidence 345677888888999998873
No 306
>PLN03234 cytochrome P450 83B1; Provisional
Probab=24.55 E-value=91 Score=24.61 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=24.5
Q ss_pred HHHHHHhhhccCCchHHHHHHHHHHHHHH
Q 034652 48 LLMVGIGLMYFPTCPQEALLLQQDIKEAK 76 (88)
Q Consensus 48 l~~vgy~v~tFnDcpeA~~eL~~eI~eAk 76 (88)
-.++.|-+....+.||..+++++||+++-
T Consensus 305 a~tl~~~l~~L~~~P~v~~kl~~Ei~~~~ 333 (499)
T PLN03234 305 AAVVVWAMTYLIKYPEAMKKAQDEVRNVI 333 (499)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 35677888888899999999999999874
No 307
>smart00740 PASTA PASTA domain.
Probab=24.54 E-value=64 Score=17.58 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCcc
Q 034652 71 DIKEAKEYLERKGIDV 86 (88)
Q Consensus 71 eI~eAk~dL~~kG~~~ 86 (88)
..++|++.|+++|+.+
T Consensus 14 ~~~~a~~~l~~~g~~~ 29 (66)
T smart00740 14 SKEEAKKLLKALGLKV 29 (66)
T ss_pred CHHHHHHHHHHCCCEE
Confidence 4678899999998864
No 308
>TIGR01597 PYST-B Plasmodium yoelii subtelomeric family PYST-B. This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=24.43 E-value=61 Score=25.33 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 034652 65 ALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 65 ~~eL~~eI~eAk~dL~~kG 83 (88)
..||++|++|.|+++-.|+
T Consensus 115 I~el~keLee~kKeldnk~ 133 (255)
T TIGR01597 115 INKLQKELEELKKELDNEM 133 (255)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 4578899999999987765
No 309
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=24.41 E-value=1.3e+02 Score=24.23 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHH
Q 034652 36 PIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQ 70 (88)
Q Consensus 36 P~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~ 70 (88)
|+|.++-....-.++.-|.-..+| .+|-++.|+|
T Consensus 275 ~~~~i~y~~lii~fs~fys~i~~n-P~diA~~Lkk 308 (395)
T TIGR02920 275 PVGILIYLILQMLLSYFFTFVNIN-PKEISKSFRK 308 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHheEC-HHHHHHHHHH
Confidence 445444444445555566666776 4455555554
No 310
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=24.40 E-value=70 Score=19.87 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=23.3
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+..++-++..++-+++++++++.+++.+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F 34 (95)
T PF00639_consen 4 VKPPPSDEEKDAAKKKAEEIYEQLKKGEDSF 34 (95)
T ss_dssp EESTTSCCHHHHHHHHHHHHHHHHHTTSSSH
T ss_pred EECCCchhhHHHHHHHHHHHHHHHHhCchhH
Confidence 3445566777788889999999998876544
No 311
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=24.35 E-value=86 Score=21.68 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 034652 63 QEALLLQQDIKEAKEY 78 (88)
Q Consensus 63 eA~~eL~~eI~eAk~d 78 (88)
+++++|+++|++++++
T Consensus 158 ~sa~~l~~~i~~~~~f 173 (174)
T PF02866_consen 158 ESAKELKKEIEKGLEF 173 (174)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4566777777777765
No 312
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=24.33 E-value=99 Score=21.69 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 034652 63 QEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~k 82 (88)
.|.+++..|.++|+++|++.
T Consensus 106 ~a~~~I~~e~~~a~~~l~~~ 125 (161)
T COG0711 106 AAEAEIEAEKERALEELRAE 125 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666553
No 313
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.30 E-value=1e+02 Score=24.08 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=23.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
|+.+-++++++|+++--+.|+++|++
T Consensus 7 dGk~va~~i~~~lk~~i~~l~~~g~~ 32 (285)
T PRK14189 7 DGNALSKQLRAEAAQRAAALTARGHQ 32 (285)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 78889999999999999999988864
No 314
>PF05472 Ter: DNA replication terminus site-binding protein (Ter protein); InterPro: IPR008865 This entry contains several bacterial DNA replication terminus site-binding proteins (also known as Ter proteins). They are required for the termination of DNA replication and function by binding to DNA replication terminator sequences, thus preventing the passage of replication forks []. The termination efficiency is affected by the affinity of a particular protein for the terminator sequence.; GO: 0003677 DNA binding, 0006274 DNA replication termination, 0005737 cytoplasm; PDB: 1SUT_A 2I06_A 2EWJ_A 2I05_A 1ECR_A.
Probab=24.30 E-value=65 Score=24.89 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=21.4
Q ss_pred hhhccCCchH-HHHHHHHHHHHHHHHHHh
Q 034652 54 GLMYFPTCPQ-EALLLQQDIKEAKEYLER 81 (88)
Q Consensus 54 ~v~tFnDcpe-A~~eL~~eI~eAk~dL~~ 81 (88)
|+..|++-.+ +..++-.||.++|+++++
T Consensus 86 Gvi~~~~~~~~~~~~~i~~IN~~K~~~~~ 114 (290)
T PF05472_consen 86 GVICLSPSDQQELLSLIEEINQLKAAFEQ 114 (290)
T ss_dssp EEEEEEE-HHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5666665444 888888999999999875
No 315
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=24.27 E-value=1.2e+02 Score=18.40 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhcC
Q 034652 61 CPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~kG 83 (88)
.++.++++.+++++..+..+++.
T Consensus 113 ~~~~a~~~~~~~~~~~~~i~~~~ 135 (148)
T cd00636 113 KEENAEELIAELDARLAELRAKL 135 (148)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999988888888887764
No 316
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.22 E-value=1e+02 Score=24.24 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
|+.+-+++++++|++--+.|+++|++
T Consensus 6 ~Gk~vA~~i~~~l~~~v~~l~~~g~~ 31 (297)
T PRK14167 6 DGNAVAAQIRDDLTDAIETLEDAGVT 31 (297)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67888999999999988889988864
No 317
>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=24.11 E-value=2.1e+02 Score=18.50 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhc
Q 034652 70 QDIKEAKEYLERK 82 (88)
Q Consensus 70 ~eI~eAk~dL~~k 82 (88)
+-|++||++..++
T Consensus 50 klie~AK~a~ak~ 62 (86)
T PF05680_consen 50 KLIEQAKAAYAKK 62 (86)
T ss_pred HHHHHHHHHHHHh
Confidence 4588999988765
No 318
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=24.04 E-value=1.6e+02 Score=24.74 Aligned_cols=21 Identities=10% Similarity=0.176 Sum_probs=17.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVAITALWFGL 21 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~w~~l 21 (88)
|.+++++..+..+.+++|+..
T Consensus 360 m~~~k~~~G~~ll~~~~~ll~ 380 (571)
T PRK00293 360 MNQVKTAFGFVLLALPVFLLE 380 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999765
No 319
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=24.02 E-value=89 Score=22.22 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 61 CPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
.|+.|.++.+++++ .|+++|+.|
T Consensus 89 ~P~~A~~iL~~le~---~L~~~g~eV 111 (138)
T PF08915_consen 89 SPDVAVEILKKLEE---RLKSRGFEV 111 (138)
T ss_dssp -HHHHHHHHHHHHH---HHHHTT-EE
T ss_pred ChHHHHHHHHHHHH---HHHhCCCeE
Confidence 68999988887764 578898875
No 320
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=24.01 E-value=1e+02 Score=21.54 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=23.5
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
+.|-.||+---....++.++.+.|.++|-+
T Consensus 59 F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~ 88 (174)
T PF02630_consen 59 FGYTRCPDVCPTTLANLSQLQKQLGEEGKD 88 (174)
T ss_dssp EE-TTSSSHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEcCCCccCHHHHHHHHHHHHHhhhccCc
Confidence 457789988888888899999999987644
No 321
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=23.97 E-value=1.4e+02 Score=24.77 Aligned_cols=37 Identities=14% Similarity=0.001 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHH
Q 034652 33 GLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQ 70 (88)
Q Consensus 33 ~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~ 70 (88)
+--|+|.++-...=.+++.-|.-.+|| -+|-|++|+|
T Consensus 310 ~~~~~y~~~y~~lii~Fs~Fy~~i~~n-p~~~A~~lkk 346 (436)
T COG0201 310 PGSPVYIALYVVLIIFFSYFYTEIQFN-PEEIAENLKK 346 (436)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence 566889988888888999999999999 6666777665
No 322
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=23.97 E-value=53 Score=19.09 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=17.6
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+++-..||-.. .||+.|+++|++++
T Consensus 5 lys~~~Cp~C~--------~ak~~L~~~~i~~~ 29 (72)
T cd03029 5 LFTKPGCPFCA--------RAKAALQENGISYE 29 (72)
T ss_pred EEECCCCHHHH--------HHHHHHHHcCCCcE
Confidence 45667777654 46888888888763
No 323
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=23.93 E-value=85 Score=18.87 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
.+++++.+.++++|+++
T Consensus 69 ~~v~~~~~~l~~~g~~~ 85 (117)
T cd07240 69 EDLEALAAHLEAAGVAP 85 (117)
T ss_pred HHHHHHHHHHHHcCCce
Confidence 37888888888899876
No 324
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.88 E-value=93 Score=17.83 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhcCCccC
Q 034652 71 DIKEAKEYLERKGIDVS 87 (88)
Q Consensus 71 eI~eAk~dL~~kG~~~d 87 (88)
+..+-.+.||+.|+.++
T Consensus 16 ~a~~i~~~Lr~~g~~v~ 32 (91)
T cd00859 16 EALELAEQLRDAGIKAE 32 (91)
T ss_pred HHHHHHHHHHHCCCEEE
Confidence 34444566888887653
No 325
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.85 E-value=34 Score=23.86 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=14.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+|.|..+..++|+.|+|.|+..=|-++
T Consensus 79 e~~ei~~~i~~eV~~v~~dv~~i~~dv 105 (126)
T PF07889_consen 79 EQKEISKQIKDEVTEVREDVSQIGDDV 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444445555566666665555444
No 326
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.83 E-value=1.1e+02 Score=21.55 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=16.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~k 82 (88)
.=+.+|.++++.+++++.-++++++
T Consensus 104 ~~g~~~~a~~~~~~~~~~~~~~~~~ 128 (245)
T cd01144 104 LAGRPARAEELAEALRRRLAALRKQ 128 (245)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHH
Confidence 3356777777777777766666643
No 327
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=23.82 E-value=1.8e+02 Score=24.33 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=23.3
Q ss_pred HHHhhhccCCchHHHHHHHHHHHHHHHHHHh
Q 034652 51 VGIGLMYFPTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 51 vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
+.-.+.+-|--+|+.++++++|.+||+.++.
T Consensus 379 ~~~al~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (451)
T PRK13723 379 ARAMLATGNYPEAVMDHLRENLNQAQRQIAA 409 (451)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445588999999999999999865
No 328
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=23.79 E-value=1.2e+02 Score=19.49 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 63 QEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
++.++.++.++++++.+++.|+++
T Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~~~ 81 (146)
T cd01989 58 EEDKEAKELLLPYRCFCSRKGVQC 81 (146)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeE
Confidence 334556667788888888888764
No 329
>COG4711 Predicted membrane protein [Function unknown]
Probab=23.74 E-value=2.4e+02 Score=21.67 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhccc------------CccccchhHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVAITALWFGLLQTSV------------IPRSHTGLLPIYFIVSLGC 45 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~w~~l~~~~l------------~p~~~~~~lP~~~lv~fG~ 45 (88)
|+-.|.+...+..+...|...++..+ +|......+|.|++++.+|
T Consensus 121 isp~h~lal~~~~l~I~y~fvy~a~f~~~~~~~~~~g~vp~rl~~tmv~y~~~~l~~ 177 (217)
T COG4711 121 ISPYHSLALVLVVLVIMYSFVYTAKFGNDKKREEGAGFVPRRLRTTMVIYFVSSLAS 177 (217)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccceeeeehHHHHHHHHHHHHHH
Confidence 44566777778888888888875332 2222345566666666655
No 330
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=23.71 E-value=64 Score=20.49 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
.+++++.+.|+++|+++
T Consensus 71 ~dv~~~~~~l~~~G~~~ 87 (124)
T cd08361 71 DALESAATELEQYGHEV 87 (124)
T ss_pred HHHHHHHHHHHHcCCce
Confidence 36788888888999875
No 331
>TIGR03064 sortase_srtB sortase, SrtB family. Members of this transpeptidase family are, in most cases, designated sortase B, product of the srtB gene. This protein shows only distant similarity to the sortase A family, for which there may be several members in a single bacterial genome. Typical SrtB substrate motifs include NAKTN, NPKSS, etc, and otherwise resemble the LPXTG sorting signals recognized by sortase A proteins.
Probab=23.71 E-value=1.6e+02 Score=22.07 Aligned_cols=38 Identities=21% Similarity=0.126 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHH
Q 034652 38 YFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEA 75 (88)
Q Consensus 38 ~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eA 75 (88)
++++..-++|.+.+++.......-.++++++++..++.
T Consensus 8 ii~~~vf~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 45 (232)
T TIGR03064 8 LLFLIVFFYSLYKLGQIFYDYYTNRQVLAEAQQVYKKS 45 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhcc
Confidence 34444556777778777788888888999988766554
No 332
>PF08951 EntA_Immun: Enterocin A Immunity; InterPro: IPR015046 Gram-positive lactobacilli produce bacteriocins to kill closely-related competitor species []. To protect themselves from the bacteriocidal activity of this molecule they co-express an immunity protein (for discussion of this operon see Bacteriocin_IIc PF10439 from PFAM). The immunity protein structure is a soluble, cytoplasmic, antiparallel four alpha-helical globular bundle with a fifth, more flexible and more divergent C-terminal helical hair-pin []. The C-terminal hair-pin recognises the C terminus of the producer bacteriocin and this interaction is sufficient to dis-orient the bacteriocin within the membrane and close up the permeabilising pore that on its own the bacteriocin creates []. These immunity proteins interact in the same way with other bacteriocins, family Bacteriocin_II, PF01721 from PFAM. Since many enterococci can produce more than one bacteriocin it seems likely that the whole operon can be carried on transferable plasmids []. ; PDB: 2BL8_C 2BL7_A 2K19_A 2FU2_A 1TDP_A 2IP6_A.
Probab=23.71 E-value=1.4e+02 Score=17.29 Aligned_cols=32 Identities=19% Similarity=0.025 Sum_probs=24.5
Q ss_pred HHHhhhccCCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 51 VGIGLMYFPTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 51 vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
..+.+. -+..++...++++-+..|+..|.+.+
T Consensus 9 ~i~~l~-~~~~~~~~~~lr~iL~~a~~~l~~~~ 40 (75)
T PF08951_consen 9 IIYNLY-NDLDVKINEELRKILLKAKNELEKGE 40 (75)
T ss_dssp HHHHHH-CCHCHHCGHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHH-hcccccCCHHHHHHHHHHHHHHhcCC
Confidence 345555 44577888899999999999998754
No 333
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=23.70 E-value=2.1e+02 Score=21.83 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=20.0
Q ss_pred cccCccccchhHHHHHHHHHHHHHHH
Q 034652 24 TSVIPRSHTGLLPIYFIVSLGCYGLL 49 (88)
Q Consensus 24 ~~l~p~~~~~~lP~~~lv~fG~Ysl~ 49 (88)
.+.+|+...-++|......+|.|.+-
T Consensus 328 ~g~l~P~laaw~P~iif~~~~~~ll~ 353 (356)
T PRK15071 328 VYGIPPIIGALLPSLLFLGISLYLLR 353 (356)
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHh
Confidence 34577777788899998888888764
No 334
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.36 E-value=62 Score=19.84 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=20.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
..+-.+-..-|+.||..+++.+.+|.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667789999999999998875
No 335
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.35 E-value=6.4e+02 Score=23.89 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 034652 61 CPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 61 cpeA~~eL~~eI~eAk~dL~~ 81 (88)
..++.+||+.+..||-+-||+
T Consensus 91 ~~~~~~~l~~~~~e~~~~l~r 111 (1188)
T COG3523 91 IDAELEELNAQLGEALRTLKR 111 (1188)
T ss_pred cccchHHHHHHHHHHHHHHHH
Confidence 356778888999999888887
No 336
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=23.33 E-value=1e+02 Score=23.71 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=24.5
Q ss_pred HhhhccCCchHHHHHHHHHHHHHHHHHHh
Q 034652 53 IGLMYFPTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 53 y~v~tFnDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
+.-+||.=.+|+++++.++|++.|+...+
T Consensus 220 ~S~lT~~i~~~~~~~i~~~i~~fRk~i~~ 248 (271)
T TIGR02147 220 VSTVTFGISEEAYKEIVKKIQEFRKEVLA 248 (271)
T ss_pred cceeeEecCHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999998754
No 337
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=23.22 E-value=92 Score=18.80 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
++++++.+.++++|+++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~ 102 (126)
T cd08346 85 ASLDAWRERLRAAGVPVS 102 (126)
T ss_pred HHHHHHHHHHHHcCCccc
Confidence 367788888888888764
No 338
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=23.17 E-value=2.1e+02 Score=18.19 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHH
Q 034652 40 IVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 40 lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~ 80 (88)
=+-...+..-.-.++.+.- +-|++.++..++++++++.+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 92 (181)
T PF12729_consen 53 DIRSNLQRIRRALRRYLLA-TDPEERQEIEKEIDEARAEID 92 (181)
T ss_pred HHHHHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555 566667777777777766554
No 339
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=23.09 E-value=1.2e+02 Score=27.00 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=28.4
Q ss_pred hhhccCCc-------hHHHHHHH--------------------HHHHHHHHHHHhcCCccCC
Q 034652 54 GLMYFPTC-------PQEALLLQ--------------------QDIKEAKEYLERKGIDVSE 88 (88)
Q Consensus 54 ~v~tFnDc-------peA~~eL~--------------------~eI~eAk~dL~~kG~~~d~ 88 (88)
-+.+|+|+ |++-.||= -|.++|-++|++||+++-|
T Consensus 48 IlA~Fpd~L~~~Qrv~D~LaeLGeL~~~peANIIKLPNISASiPQL~aaI~ELQ~kGy~~Pd 109 (741)
T TIGR00178 48 ILATFPEYLTEEQKISDALAELGELAQTPDANIIKLPNISASVPQLKAAIKELQDQGYDLPD 109 (741)
T ss_pred HHHhCcccCCHhhcCCcHHHHHHHhhCCCCCcEeecCCcccchHHHHHHHHHHHhcCCCCCC
Confidence 35789885 88888875 5899999999999998743
No 340
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=23.05 E-value=71 Score=18.21 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=14.7
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+.+++.||-.. .+|.-|+.+|++++
T Consensus 3 Ly~~~~~~~~~--------~v~~~l~~~gi~~e 27 (74)
T cd03045 3 LYYLPGSPPCR--------AVLLTAKALGLELN 27 (74)
T ss_pred EEeCCCCCcHH--------HHHHHHHHcCCCCE
Confidence 45666676543 35556666666653
No 341
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.01 E-value=1.1e+02 Score=23.96 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=22.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHhc-CCc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERK-GID 85 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~k-G~~ 85 (88)
|+.+-++++++|+++.-+.|++| |++
T Consensus 6 dGk~va~~i~~~lk~~v~~l~~~~g~~ 32 (294)
T PRK14187 6 DGKKIANDITEILATCIDDLKRQHNLF 32 (294)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 78889999999999999999887 654
No 342
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.96 E-value=1.1e+02 Score=23.79 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=23.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhc-CCc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERK-GID 85 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~k-G~~ 85 (88)
-=|+.+-++++.+|+++.=+.|+++ |++
T Consensus 3 ildGk~va~~i~~~lk~~v~~~~~~~g~~ 31 (282)
T PRK14180 3 LIDGKSLSKDLKERLATQVQEYKHHTAIT 31 (282)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3478899999999999999999887 653
No 343
>smart00750 KIND kinase non-catalytic C-lobe domain. It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features
Probab=22.96 E-value=99 Score=20.12 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhhccC
Q 034652 43 LGCYGLLMVGIGLMYFP 59 (88)
Q Consensus 43 fG~Ysl~~vgy~v~tFn 59 (88)
-=+||+|.+.|-++|..
T Consensus 85 ~DiwSlG~il~elltg~ 101 (176)
T smart00750 85 ADIYSLGITLYEALDYE 101 (176)
T ss_pred hhHHHHHHHHHHHHhCC
Confidence 34688888888888754
No 344
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.94 E-value=79 Score=20.83 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=22.8
Q ss_pred HHHHhhhccCCchHHHHHHHHHHHHHHHHH
Q 034652 50 MVGIGLMYFPTCPQEALLLQQDIKEAKEYL 79 (88)
Q Consensus 50 ~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL 79 (88)
.+|-|++.=.+.+||-+-+.+.|+..++..
T Consensus 74 ~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~ 103 (129)
T cd00584 74 DLGTGYYVEKDLEEAIEFLDKKIEELTKQI 103 (129)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHH
Confidence 467888988999999888877766665443
No 345
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=22.93 E-value=1.1e+02 Score=22.47 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcc
Q 034652 64 EALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 64 A~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
..+..+++.+++.+.++++|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~G~~v 260 (286)
T PF03480_consen 238 AREYYEAEDEEALKELEENGVTV 260 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHHHHHHHHCcCEE
Confidence 34455677888999999999987
No 346
>TIGR01558 sm_term_P27 phage terminase, small subunit, putative, P27 family. Members tend to be adjacent to the phage terminase large subunit gene.
Probab=22.74 E-value=1.2e+02 Score=19.93 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 63 QEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+.|-+...+..+|.+++++.|+.++
T Consensus 36 ~~yc~a~~~~~~a~~~i~~~G~~~~ 60 (116)
T TIGR01558 36 LRYCEAYDRYREATDDLEATGITAT 60 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHcCeeEE
Confidence 3455556677788888888887553
No 347
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.70 E-value=1.3e+02 Score=23.69 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
++|++.++-|+++|+++
T Consensus 297 e~i~~f~~~L~~~Gi~v 313 (343)
T PRK14468 297 AQILAFADVLERRGVPV 313 (343)
T ss_pred HHHHHHHHHHHHCCCeE
Confidence 56777888888888764
No 348
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=22.66 E-value=1.3e+02 Score=22.44 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=29.1
Q ss_pred HHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 48 LLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 48 l~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
+..-|+.|.-++-.|+..+..++.|+.+.+.+.++|
T Consensus 23 l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g 58 (295)
T PLN02545 23 AAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKG 58 (295)
T ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 344578899999899998888888888888887766
No 349
>PLN02940 riboflavin kinase
Probab=22.53 E-value=89 Score=24.71 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=21.6
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhc
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~k 82 (88)
.|++.+|=.+.++++|++||+.|.+-
T Consensus 341 kF~~~~~L~~qi~~D~~~a~~~~~~~ 366 (382)
T PLN02940 341 NFPSLESLIAKIHEDRRIAEKALDLP 366 (382)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCc
Confidence 58888888888899999999988653
No 350
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.51 E-value=68 Score=19.36 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
++.+++++-|++.|+.++
T Consensus 50 ~d~~~i~~~l~~~~i~~~ 67 (73)
T PF11823_consen 50 EDLEKIKEILEENGIEYE 67 (73)
T ss_pred hhHHHHHHHHHHCCCCee
Confidence 455666666666666543
No 351
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.49 E-value=1.3e+02 Score=23.84 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
++++++++-|++.|+.+
T Consensus 305 e~i~~f~~~L~~~gi~v 321 (348)
T PRK14467 305 ERVYKFQKILWDNGIST 321 (348)
T ss_pred HHHHHHHHHHHHCCCcE
Confidence 45566666677766654
No 352
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=22.45 E-value=2e+02 Score=19.31 Aligned_cols=32 Identities=6% Similarity=-0.026 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCchHHHH
Q 034652 35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEAL 66 (88)
Q Consensus 35 lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~ 66 (88)
.|-|..+.+|.-+...+.|.+++-|+.=-++-
T Consensus 41 v~~~ici~~~~~~~~~lv~~~f~ln~kyGe~G 72 (96)
T PF13571_consen 41 VNQWICIGFGVVSGSLLVWQTFRLNRKYGEHG 72 (96)
T ss_pred cchhhhHHHHHHHhhhhheeeeeccccccHHH
Confidence 35688899999999999999999998765553
No 353
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=22.41 E-value=78 Score=19.05 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhc
Q 034652 70 QDIKEAKEYLERK 82 (88)
Q Consensus 70 ~eI~eAk~dL~~k 82 (88)
.|++.|++.++.|
T Consensus 41 ~E~~aA~~~~~~K 53 (53)
T PF04270_consen 41 SELKAAQAYLAGK 53 (53)
T ss_dssp HHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcC
Confidence 5889999998876
No 354
>PRK06286 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=22.36 E-value=1.5e+02 Score=19.57 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Q 034652 36 PIYFIVSLGCYGLLMVGIGLMYFPT 60 (88)
Q Consensus 36 P~~~lv~fG~Ysl~~vgy~v~tFnD 60 (88)
..+.++..|+.....=..|+.+|+|
T Consensus 8 i~~illiiG~~f~l~gaiGllRlPD 32 (91)
T PRK06286 8 IQDILLIIASIGILIASIRLWRVEK 32 (91)
T ss_pred HHHHHHHHHHHHHHHHHHhheeCCC
Confidence 4466777788888888889999999
No 355
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=22.36 E-value=48 Score=26.40 Aligned_cols=21 Identities=33% Similarity=0.817 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCc
Q 034652 37 IYFIVSLGCYGLLMVGIGLMYFPTC 61 (88)
Q Consensus 37 ~~~lv~fG~Ysl~~vgy~v~tFnDc 61 (88)
+|+.+.+|.| +.||+..|+|-
T Consensus 15 i~~~v~LGvy----isFRiLnFPDL 35 (293)
T COG4120 15 IFAFVALGVY----ISFRILNFPDL 35 (293)
T ss_pred HHHHHHHHHh----heeeeccCCCc
Confidence 5788899998 56889999994
No 356
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=22.35 E-value=83 Score=21.61 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH
Q 034652 67 LLQQDIKEAKEYLE 80 (88)
Q Consensus 67 eL~~eI~eAk~dL~ 80 (88)
+++++|.||++-|.
T Consensus 102 ~~~~kIneAyevL~ 115 (116)
T PTZ00100 102 YIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHHHHHHHh
Confidence 34678888888775
No 357
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=22.33 E-value=95 Score=19.70 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=15.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+||-...+ ..++.+..+.++++|+.+
T Consensus 34 ~c~~C~~~-~~~l~~~~~~~~~~~~~~ 59 (140)
T cd02971 34 FTPVCTTE-LCAFRDLAEEFAKGGAEV 59 (140)
T ss_pred CCCcCHHH-HHHHHHHHHHHHHCCCEE
Confidence 56655555 555666666677777654
No 358
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.29 E-value=1.2e+02 Score=23.70 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
|+.+-++++++++++.-+.|+++|++
T Consensus 7 ~Gk~va~~i~~~l~~~v~~l~~~g~~ 32 (284)
T PRK14193 7 DGKATADEIKADLAERVAALKEKGIT 32 (284)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77888999999999999999988864
No 359
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=22.28 E-value=94 Score=26.04 Aligned_cols=31 Identities=16% Similarity=0.480 Sum_probs=24.1
Q ss_pred hhccCCch-HHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 55 LMYFPTCP-QEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 55 v~tFnDcp-eA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+-|||.|. .+..|+.++-++ ++|++.|+++.
T Consensus 254 LTTFNEvDMS~lm~mRk~ykd--af~kKhGvKlG 285 (457)
T KOG0559|consen 254 LTTFNEVDMSNLMEMRKQYKD--AFLKKHGVKLG 285 (457)
T ss_pred hhhhhhhhHHHHHHHHHHHHH--HHHHHhCceee
Confidence 45899987 456788888775 48999999874
No 360
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function.
Probab=22.27 E-value=1.1e+02 Score=21.41 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 62 PQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 62 peA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+++++|.++++++-|+..++.|..+
T Consensus 12 ~~~~~~v~~~~~~~k~~w~~~Gcsi 36 (153)
T PF04937_consen 12 DKEYKEVKEQVKEHKKSWKRTGCSI 36 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCEEE
Confidence 6788999999999999999988764
No 361
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=22.24 E-value=81 Score=21.91 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=23.9
Q ss_pred hhccCCchHH--HHHHHHHHHHH-HHHHHhcCCccCC
Q 034652 55 LMYFPTCPQE--ALLLQQDIKEA-KEYLERKGIDVSE 88 (88)
Q Consensus 55 v~tFnDcpeA--~~eL~~eI~eA-k~dL~~kG~~~d~ 88 (88)
-.+..+.-+. .+++.+++++. ++++.+-|+++.|
T Consensus 151 ~~~~~~l~~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~ 187 (207)
T cd03408 151 ESGLAVMLLAANRDELSKAVREALAPWFASFGLELVS 187 (207)
T ss_pred hcCCeeEEhhhhHHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 3455555544 67788887766 7889999998754
No 362
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=22.05 E-value=65 Score=25.77 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=23.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+-|.+.-..||+++|+|-|..-+..+++++
T Consensus 8 ~l~fe~~i~el~~~i~~l~~~~~~~~~~~~ 37 (322)
T CHL00198 8 VPDFMKPLAELESQVEELSKLAPKNDKVIN 37 (322)
T ss_pred ccchhhhHHHHHHHHHHHHhhhcccccCHH
Confidence 468889999999999999886555566553
No 363
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.04 E-value=2.1e+02 Score=17.72 Aligned_cols=39 Identities=10% Similarity=-0.014 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHH
Q 034652 37 IYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEY 78 (88)
Q Consensus 37 ~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~d 78 (88)
|..|+.|.+..+-.++ -|++.-.+..+.+++|+++-.++
T Consensus 10 f~vLvi~l~~~l~~l~---~~l~~~~~ti~~l~~~~~~i~~e 48 (90)
T PF06103_consen 10 FAVLVIFLIKVLKKLK---KTLDEVNKTIDTLQEQVDPITKE 48 (90)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445555555555553 24555555555555555544443
No 364
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=21.98 E-value=1.4e+02 Score=19.08 Aligned_cols=31 Identities=23% Similarity=0.099 Sum_probs=19.6
Q ss_pred HHHHhh-hccCCchHHHHHHHHHHHHHHHHHHh
Q 034652 50 MVGIGL-MYFPTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 50 ~vgy~v-~tFnDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
.++..+ .-|++.++..+. |++.+.||+++..
T Consensus 44 ~~~~~~l~p~~~~~~~~ek-~~~~~k~ke~~~~ 75 (80)
T cd06080 44 KKGIRVVKRWLKHFDCTEK-QKLTNKAKESYEQ 75 (80)
T ss_pred ccchhhcccccccHHHHHH-HHHHHHHHHHHHH
Confidence 344444 345555555544 8899999998764
No 365
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=21.96 E-value=83 Score=16.76 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=16.2
Q ss_pred HHHHHhhhccCCchH-HHHHHHHHHHHH
Q 034652 49 LMVGIGLMYFPTCPQ-EALLLQQDIKEA 75 (88)
Q Consensus 49 ~~vgy~v~tFnDcpe-A~~eL~~eI~eA 75 (88)
+.+|.|+..-++..| +.++|...+.+.
T Consensus 2 A~lgLGl~~aGs~~~~~~~~L~~~l~~~ 29 (35)
T PF01851_consen 2 AILGLGLIYAGSGNEEVLDLLRPYLSDT 29 (35)
T ss_dssp HHHHHHHHTTTT--HHHHHHHHHHHCTS
T ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 456778888888777 666665555443
No 366
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=21.88 E-value=68 Score=22.58 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=16.3
Q ss_pred hccCCchHHHHHHHHHHHHHHHH
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEY 78 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~d 78 (88)
.||..|| +.+.|+++|++|-+.
T Consensus 33 ~Ty~gcp-a~e~L~~~I~~aL~~ 54 (146)
T TIGR02159 33 PTYSGCP-ALEVIRQDIRDAVRA 54 (146)
T ss_pred eCCCCCc-hHHHHHHHHHHHHHh
Confidence 4677787 667888888888554
No 367
>PLN02364 L-ascorbate peroxidase 1
Probab=21.85 E-value=78 Score=24.16 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=15.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q 034652 59 PTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
++||-+.+.-|+..+.+|++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRG 25 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHH
Confidence 45677777777777777777765
No 368
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=21.83 E-value=91 Score=23.77 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=25.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~ 84 (88)
.+||.+....++.-++++.|+.+++.|-
T Consensus 228 l~ndle~~~~~l~P~l~~~~~~~~~~GA 255 (296)
T PRK14615 228 LHNSFEPVVFAAHPELRRLKETLLRHGA 255 (296)
T ss_pred ccccchhHhHHhChHHHHHHHHHHhcCC
Confidence 5799999899999999999999998874
No 369
>PRK14147 heat shock protein GrpE; Provisional
Probab=21.82 E-value=87 Score=22.60 Aligned_cols=14 Identities=21% Similarity=0.088 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 034652 66 LLLQQDIKEAKEYL 79 (88)
Q Consensus 66 ~eL~~eI~eAk~dL 79 (88)
++|++|+++.|+.+
T Consensus 28 ~~l~~e~~elkd~~ 41 (172)
T PRK14147 28 ESLRSEIALVKADA 41 (172)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555544444
No 370
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=21.78 E-value=91 Score=18.26 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHh
Q 034652 70 QDIKEAKEYLER 81 (88)
Q Consensus 70 ~eI~eAk~dL~~ 81 (88)
+||.++|+.|.+
T Consensus 18 eEI~~er~eL~~ 29 (49)
T PF08621_consen 18 EEIEEEREELLE 29 (49)
T ss_pred HHHHHHHHHHHH
Confidence 577888777654
No 371
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.70 E-value=3.1e+02 Score=19.63 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCchHH-HHHHHHHHHHHHHHHHh
Q 034652 36 PIYFIVSLGCYGLLMVGIGLMYFPTCPQE-ALLLQQDIKEAKEYLER 81 (88)
Q Consensus 36 P~~~lv~fG~Ysl~~vgy~v~tFnDcpeA-~~eL~~eI~eAk~dL~~ 81 (88)
-.|.....|.-....|||-+++|-.-.-. -+-+|.|.+.+|..|-.
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~ 52 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDE 52 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHH
Confidence 34666667777778899999888653322 23678888888877743
No 372
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.69 E-value=50 Score=20.28 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
++|+++.+.++++|.++
T Consensus 80 ~di~~~~~~l~~~G~~~ 96 (125)
T cd07264 80 DDVAAAFARAVEAGAVL 96 (125)
T ss_pred CCHHHHHHHHHHcCCEe
Confidence 47788888888888754
No 373
>PRK15487 O-antigen ligase RfaL; Provisional
Probab=21.57 E-value=2.1e+02 Score=22.98 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVAITALWFGLL 22 (88)
Q Consensus 1 M~r~~~~l~~~~~l~~~w~~l~ 22 (88)
+||+++...++..+.++|...-
T Consensus 30 ~t~~k~~~~~l~~~~~L~~l~~ 51 (400)
T PRK15487 30 ITRYKHLIIILMTITAIYYLSR 51 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHc
Confidence 6899999999999999998775
No 374
>PF03334 PhaG_MnhG_YufB: Na+/H+ antiporter subunit; InterPro: IPR005133 This is a family of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti (Sinorhizobium meliloti), show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons. ; GO: 0005451 monovalent cation:hydrogen antiporter activity, 0015672 monovalent inorganic cation transport, 0015992 proton transport
Probab=21.55 E-value=77 Score=20.00 Aligned_cols=20 Identities=40% Similarity=0.790 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhccCC
Q 034652 41 VSLGCYGLLMVGIGLMYFPT 60 (88)
Q Consensus 41 v~fG~Ysl~~vgy~v~tFnD 60 (88)
+..|+.....=.+|+.+|+|
T Consensus 2 l~~G~~~~l~~~iGllR~pd 21 (81)
T PF03334_consen 2 LLLGAFFMLIGAIGLLRFPD 21 (81)
T ss_pred cHHHHHHHHHHHHHHHhCCc
Confidence 46777777777889999998
No 375
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=21.53 E-value=1.2e+02 Score=24.47 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=15.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q 034652 59 PTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
-+-.++-++|++|+.+-++.+++
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667788888777666654
No 376
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=21.48 E-value=98 Score=20.90 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=20.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 58 FPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 58 FnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
...||....++ .++.+..++++++|+.+
T Consensus 34 ~t~Cp~c~~~~-~~l~~l~~~~~~~~v~~ 61 (171)
T cd02969 34 CNHCPYVKAIE-DRLNRLAKEYGAKGVAV 61 (171)
T ss_pred CCCCccHHHHH-HHHHHHHHHHhhCCeEE
Confidence 46788776664 57888888888777654
No 377
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=21.47 E-value=1e+02 Score=24.36 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=22.2
Q ss_pred HHHHHhhhccCCchHHHHHHHHHHHHHH
Q 034652 49 LMVGIGLMYFPTCPQEALLLQQDIKEAK 76 (88)
Q Consensus 49 ~~vgy~v~tFnDcpeA~~eL~~eI~eAk 76 (88)
.++.|.+...-..||..+.|++||+++-
T Consensus 311 ~tl~~~l~~L~~~P~vq~kl~~Ei~~v~ 338 (503)
T PLN02394 311 WSIEWGIAELVNHPEIQKKLRDELDTVL 338 (503)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHh
Confidence 3455666666678999999999999874
No 378
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.46 E-value=1.1e+02 Score=23.98 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 034652 62 PQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 62 peA~~eL~~eI~eAk~dL~~k 82 (88)
.+..++|++||++.+++.+.|
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777666654
No 379
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=21.45 E-value=2.7e+02 Score=18.87 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 45 CYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 45 ~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
=|.-.++.++......--.+++-+-+++.++-+.||++|
T Consensus 7 ~Fae~~i~q~~A~~~~d~~~~Nr~~~k~~~~~~eLk~r~ 45 (106)
T PF09450_consen 7 RFAEISIAQGEAIDRGDARTANRLYDKMIRIYDELKSRG 45 (106)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcC
Confidence 466778888888888888999999999999999999986
No 380
>PF09592 DUF2031: Protein of unknown function (DUF2031); InterPro: IPR006484 The sequences in this group represent a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=21.43 E-value=75 Score=24.49 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 034652 65 ALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 65 ~~eL~~eI~eAk~dL~~kG 83 (88)
..||++|++|.|+++..++
T Consensus 114 I~el~keLeevkKeldnk~ 132 (228)
T PF09592_consen 114 INELRKELEEVKKELDNKR 132 (228)
T ss_pred HHHHHHHHHHHHHHhcccC
Confidence 3467789999998887665
No 381
>PF06037 DUF922: Bacterial protein of unknown function (DUF922); InterPro: IPR010321 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.40 E-value=1e+02 Score=21.88 Aligned_cols=42 Identities=12% Similarity=0.032 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 46 YGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 46 Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
-.+-.-.-++-..+||.+...++.+...+.=+..+++..+||
T Consensus 105 ~~ie~~l~~L~~~~~C~~l~~~~~~~~~~~l~~~~~~q~~fD 146 (161)
T PF06037_consen 105 REIEKALKGLPPDPDCQKLRAEANRRTDAILARHRQRQRDFD 146 (161)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445556688899999888888888888888888777776
No 382
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=21.39 E-value=93 Score=17.89 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=15.8
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 55 LMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 55 v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+.+++.||-. ..+|.-|+.||++++
T Consensus 3 ly~~~~~p~~--------~rv~~~L~~~gl~~e 27 (71)
T cd03060 3 LYSFRRCPYA--------MRARMALLLAGITVE 27 (71)
T ss_pred EEecCCCcHH--------HHHHHHHHHcCCCcE
Confidence 3456667744 345677777777664
No 383
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.38 E-value=92 Score=21.47 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
+.|.++-+.|+++|++|-
T Consensus 123 ~~i~~~y~~L~~~G~~FP 140 (142)
T cd03569 123 KYVVDTYQILKAEGHKFP 140 (142)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 358888999999999874
No 384
>COG2815 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.37 E-value=34 Score=26.91 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
+..++|+..|+++|+.+.
T Consensus 34 ~~~~~A~~~l~~~~l~v~ 51 (303)
T COG2815 34 LDEEDAKAELQKAGLEVG 51 (303)
T ss_pred ccHHHHHHHHHhcCceee
Confidence 567889999999998764
No 385
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=21.33 E-value=1.6e+02 Score=18.10 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=20.1
Q ss_pred hccCCch-HHHHHHHHHHHHHHHHHHh
Q 034652 56 MYFPTCP-QEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 56 ~tFnDcp-eA~~eL~~eI~eAk~dL~~ 81 (88)
-++.|++ +...+|.+.++...+.+++
T Consensus 38 ~~l~dl~~~~~~~l~~~~~~v~~~l~~ 64 (98)
T PF01230_consen 38 ESLSDLPPEERAELMQLVQKVAKALKE 64 (98)
T ss_dssp SSGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3566766 7888899888888887776
No 386
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.32 E-value=75 Score=19.10 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCccC
Q 034652 72 IKEAKEYLERKGIDVS 87 (88)
Q Consensus 72 I~eAk~dL~~kG~~~d 87 (88)
++++.+.|+++|+++.
T Consensus 83 ~~~~~~~l~~~G~~~~ 98 (125)
T cd08352 83 IEAAVKHLKAKGVEVE 98 (125)
T ss_pred HHHHHHHHHHcCCccc
Confidence 5567777788887753
No 387
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=21.29 E-value=1.6e+02 Score=21.02 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=22.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhcC-Ccc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERKG-IDV 86 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~kG-~~~ 86 (88)
|.++++.+..+.+.+..+.++++| +.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 192 (222)
T cd00635 165 EDPEEVRPYFRELRELRDELGAKGGVNL 192 (222)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 677888888899999999999996 553
No 388
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=21.27 E-value=1.1e+02 Score=18.28 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
.+++++.+.++++|+++.
T Consensus 66 ~d~~~~~~~l~~~G~~~~ 83 (113)
T cd08345 66 EEFDEYTERLKALGVEMK 83 (113)
T ss_pred HHHHHHHHHHHHcCCccC
Confidence 367778888888888763
No 389
>PF06780 Erp_C: Erp protein C-terminus; InterPro: IPR009618 This entry represents the C terminus of bacterial Erp proteins that seem to be specific to Borrelia burgdorferi (a causative agent of Lyme disease). Borrelia Erp proteins are particularly heterogeneous, which might enable them to interact with a wide variety of host components [].
Probab=21.27 E-value=1.2e+02 Score=22.00 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 034652 63 QEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~k 82 (88)
+.-..|.+|...||..||.|
T Consensus 68 ~~L~~Ll~eL~~~R~~LR~K 87 (146)
T PF06780_consen 68 SGLGKLLKELSDTRSSLRTK 87 (146)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999986
No 390
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.18 E-value=1.3e+02 Score=23.68 Aligned_cols=26 Identities=19% Similarity=0.046 Sum_probs=22.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHhc-CCc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERK-GID 85 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~k-G~~ 85 (88)
|+.+-++++.+|+++.-+.++++ |++
T Consensus 6 dGk~iA~~i~~~lk~~v~~l~~~~g~~ 32 (297)
T PRK14186 6 DGKALAAEIEQRLQAQIESNLPKAGRP 32 (297)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 67888999999999999889887 654
No 391
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=21.15 E-value=1.1e+02 Score=23.71 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.4
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHH
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEYLE 80 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~dL~ 80 (88)
..|++-+|=-+.++++|+.||+.|.
T Consensus 280 ~kF~s~~~L~~~i~~D~~~a~~~~~ 304 (305)
T PRK05627 280 QKFDSLDELKAQIAKDIETARAFLA 304 (305)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888888899999998764
No 392
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=21.11 E-value=1.7e+02 Score=18.10 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 63 QEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 63 eA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
+.|-+...+..+|.+++++.|+.+
T Consensus 27 ~~yc~~~~~~~~~~~~l~~~G~~~ 50 (100)
T PF05119_consen 27 ERYCEAYSRYREAEKELKKEGFVV 50 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcee
Confidence 566777788999999999999864
No 393
>PLN03112 cytochrome P450 family protein; Provisional
Probab=21.05 E-value=1.1e+02 Score=24.35 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=23.9
Q ss_pred HHHHHhhhccCCchHHHHHHHHHHHHHH
Q 034652 49 LMVGIGLMYFPTCPQEALLLQQDIKEAK 76 (88)
Q Consensus 49 ~~vgy~v~tFnDcpeA~~eL~~eI~eAk 76 (88)
.++.|.+...-+.||..+.|++||++.-
T Consensus 314 ~~l~~~l~~L~~~P~vq~kl~~Ei~~~~ 341 (514)
T PLN03112 314 VTNEWAMAEVIKNPRVLRKIQEELDSVV 341 (514)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHhc
Confidence 4677888888889999999999999863
No 394
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.99 E-value=71 Score=26.06 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=21.5
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
.++....+|-+.=-++-+|+|+|+|+||
T Consensus 163 ~s~~E~~~Avqka~~~~~e~r~dir~k~ 190 (351)
T COG3580 163 LSKEENEEAVQKAWKEGEEYREDIRKKG 190 (351)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777788999999999987
No 395
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.94 E-value=1.6e+02 Score=23.66 Aligned_cols=12 Identities=17% Similarity=0.025 Sum_probs=9.4
Q ss_pred cCCchHHHHHHH
Q 034652 58 FPTCPQEALLLQ 69 (88)
Q Consensus 58 FnDcpeA~~eL~ 69 (88)
+||-+|.+++|.
T Consensus 261 vND~~e~a~~L~ 272 (345)
T PRK14466 261 LNDSLKHAKELV 272 (345)
T ss_pred CCCCHHHHHHHH
Confidence 678888887776
No 396
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=20.93 E-value=1.1e+02 Score=17.82 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 034652 64 EALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 64 A~~eL~~eI~eAk~dL~~k 82 (88)
.++..+++|.+.+++|+..
T Consensus 2 e~~~~~~~i~a~~e~l~~~ 20 (64)
T PF12644_consen 2 EYATKEDEIMATKEELEEL 20 (64)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777653
No 397
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=20.90 E-value=2.1e+02 Score=17.28 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 034652 62 PQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 62 peA~~eL~~eI~eAk~dL~~ 81 (88)
|+.-+|++++|.+.-++++.
T Consensus 21 P~sG~e~R~~l~~~~~~~~~ 40 (74)
T PF12732_consen 21 PKSGKETREKLKDKAEDLKD 40 (74)
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 45556666666555555554
No 398
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=20.76 E-value=1.1e+02 Score=16.52 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=7.6
Q ss_pred ChHHHHHHHHHHH
Q 034652 1 MKHVVKILTLLVA 13 (88)
Q Consensus 1 M~r~~~~l~~~~~ 13 (88)
|.++|+|+.+.+.
T Consensus 4 ~~~~H~W~Gl~~g 16 (37)
T PF13706_consen 4 LRKLHRWLGLILG 16 (37)
T ss_pred HHHHHHHHHHHHH
Confidence 4567777665443
No 399
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=20.75 E-value=69 Score=20.49 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=18.2
Q ss_pred hhhcc--CCchHHHHHHHHHHHHHHHHHHhcC
Q 034652 54 GLMYF--PTCPQEALLLQQDIKEAKEYLERKG 83 (88)
Q Consensus 54 ~v~tF--nDcpeA~~eL~~eI~eAk~dL~~kG 83 (88)
-|+.| +.||..-.....++++..+.++++|
T Consensus 25 ~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~ 56 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTLANLAQALKQLGADG 56 (142)
T ss_pred EEEEEEcCCCcccCHHHHHHHHHHHHHhhHhh
Confidence 34444 8888744444455666777777665
No 400
>PRK10557 hypothetical protein; Provisional
Probab=20.73 E-value=3.4e+02 Score=19.64 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCc
Q 034652 72 IKEAKEYLERKGID 85 (88)
Q Consensus 72 I~eAk~dL~~kG~~ 85 (88)
+.--++|+|+.|+.
T Consensus 56 l~~l~~dirrAGy~ 69 (192)
T PRK10557 56 VFTVEKDLRRAGYC 69 (192)
T ss_pred HHHHHHHHHHcCCC
Confidence 55568999999986
No 401
>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism]
Probab=20.71 E-value=85 Score=25.80 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 034652 62 PQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 62 peA~~eL~~eI~eAk~dL~~k 82 (88)
||+.++.+++|++||++--+-
T Consensus 184 ~e~~~~m~~~i~~~k~~GDSi 204 (369)
T COG0082 184 PEAEEEMEELIDKAKKEGDSI 204 (369)
T ss_pred HHHHHHHHHHHHHHHhcCCCc
Confidence 466788999999998874443
No 402
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=20.69 E-value=1.2e+02 Score=19.30 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 034652 62 PQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 62 peA~~eL~~eI~eAk~dL~~ 81 (88)
.++.-|--.|.++||++|.+
T Consensus 47 A~kt~~~yaeLD~~k~ELak 66 (71)
T COG5420 47 AEKTFEAYAELDAAKRELAK 66 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555688899999876
No 403
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=20.62 E-value=82 Score=21.69 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhcCCcc
Q 034652 66 LLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 66 ~eL~~eI~eAk~dL~~kG~~~ 86 (88)
.-+++|++-.-+.||+.|+.+
T Consensus 64 vll~~EV~pvi~aL~~~GI~v 84 (123)
T PF07485_consen 64 VLLEDEVNPVISALRKNGIEV 84 (123)
T ss_pred EecHHHHHHHHHHHHHCCceE
Confidence 357889999999999999986
No 404
>cd00735 bacteriophage_T4-like_lysozyme Bacteriophage T4-like lysozymes hydrolyse the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan heteropolymers of prokaryotic cell walls. Members include a variety of bacteriophages (T4, RB49, RB69, Aeh1) as well as Dictyostelium.
Probab=20.60 E-value=1.4e+02 Score=21.28 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 034652 62 PQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 62 peA~~eL~~eI~eAk~dL~~ 81 (88)
+||.+-|+++++.|++++.+
T Consensus 63 ~qa~~lL~~Dl~~~~~~v~~ 82 (164)
T cd00735 63 EEVEALFEKDLAKAQRDIMS 82 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999875
No 405
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=20.57 E-value=1e+02 Score=23.22 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=24.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~ 84 (88)
..||.++.+-++..++++.++.+++.|-
T Consensus 207 l~Ndle~~~~~~~p~l~~i~~~l~~~ga 234 (269)
T PRK14609 207 LVNDFEDSVFPKYPEIAEIKEKLYRSGA 234 (269)
T ss_pred cCCChHHHHHHcChHHHHHHHHHHhCCC
Confidence 3799999999889999999999998874
No 406
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=20.53 E-value=1.2e+02 Score=20.69 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=22.8
Q ss_pred CCchHHHHHHH---HHHHHHHHHHHhcCCccC
Q 034652 59 PTCPQEALLLQ---QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 59 nDcpeA~~eL~---~eI~eAk~dL~~kG~~~d 87 (88)
|=.|+.++.|+ +..+++|+.|.+-|+++-
T Consensus 16 n~Td~Gaktlke~p~R~~av~~~les~G~k~~ 47 (104)
T COG4274 16 NFTDQGAKTLKETPKRAAAVRALLESMGGKVK 47 (104)
T ss_pred hccHhHHHHHhhCHHHHHHHHHHHHHcCcEEE
Confidence 44577777776 568899999999999874
No 407
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=20.47 E-value=1.5e+02 Score=19.87 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=15.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHh
Q 034652 59 PTCPQEALLLQQDIKEAKEYLER 81 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~ 81 (88)
=+.+|.++++.+++++.-+++++
T Consensus 108 ~g~~~~a~~~~~~~~~~~~~v~~ 130 (195)
T cd01143 108 TGAEEEAEKLVKEMKQKIDKVKD 130 (195)
T ss_pred hCChHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777666666655
No 408
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=20.47 E-value=67 Score=28.48 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.1
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHhc
Q 034652 56 MYFPTCPQEALLLQQDIKEAKEYLERK 82 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~dL~~k 82 (88)
-+||.--+.-.+.|+++++||+++.++
T Consensus 342 ~~FN~M~~eL~~qq~~l~~ak~~~e~r 368 (712)
T COG5000 342 KAFNKMTEQLSSQQEALERAKDALEQR 368 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999873
No 409
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=20.43 E-value=96 Score=23.70 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=25.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGI 84 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~ 84 (88)
..||.+....+|-.++++.|+.+++.|-
T Consensus 227 l~ndle~~~~~l~P~~~~i~~~~~~~Ga 254 (297)
T PRK14613 227 LENDFEPVAFQLHPELGVLKDKFLEFGS 254 (297)
T ss_pred hcccchHHHHHhCcHHHHHHHHHHHcCC
Confidence 5799988889999999999999999884
No 410
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=20.40 E-value=2.5e+02 Score=24.29 Aligned_cols=18 Identities=22% Similarity=0.216 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhccC
Q 034652 42 SLGCYGLLMVGIGLMYFP 59 (88)
Q Consensus 42 ~fG~Ysl~~vgy~v~tFn 59 (88)
-++.|.++++.||++=+|
T Consensus 180 ~~~~~~lFt~LYGlyP~N 197 (668)
T PF04388_consen 180 QASVYALFTRLYGLYPCN 197 (668)
T ss_pred hhhHHHHHHHHHhcccch
Confidence 367899999999998665
No 411
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=20.39 E-value=59 Score=19.97 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=18.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 59 PTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 59 nDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
+||.++-..-..-++++++-+++.|.++.
T Consensus 18 ~~~~~~p~~~~~~~~~~~~~l~~~G~~v~ 46 (83)
T PF13670_consen 18 SDDSDAPPADWLSIEQAVAKLEAQGYQVR 46 (83)
T ss_pred CCCCCCCccccCCHHHHHHHHHhcCCceE
Confidence 44444433333357788888888998664
No 412
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.38 E-value=1e+02 Score=24.54 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHH---hhhccCCchHHHHHHHHHHHHHHHHHHhcCCcc
Q 034652 36 PIYFIVSLGCYGLLMVGI---GLMYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 36 P~~~lv~fG~Ysl~~vgy---~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~ 86 (88)
|.==.++=.+=..+.+-| .+..|+|-+-+-..=.++-.+++..||.+|++.
T Consensus 260 ~~KE~IL~aAR~~~~~~~~g~~I~if~DlS~~~l~kRr~~~~i~~~Lr~~~i~~ 313 (370)
T PF02994_consen 260 QDKEKILKAAREKGQLTYKGKRIRIFPDLSPETLQKRRKFNPIKKKLREKGIKY 313 (370)
T ss_dssp HHHHHHHHHHHHHS-EEETTEEEEEECTSTHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred ccHHHHHHHHHhcCceeeCCCceEEeCCCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 444344445555555655 689999999888888899999999999999874
No 413
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=20.37 E-value=80 Score=20.43 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
.+..+|.+.|+++|+++
T Consensus 22 ~~al~A~~~L~~~Gi~~ 38 (124)
T PF02780_consen 22 EEALEAAEELEEEGIKA 38 (124)
T ss_dssp HHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHcCCce
Confidence 45667788888888765
No 414
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=20.32 E-value=76 Score=23.12 Aligned_cols=22 Identities=18% Similarity=0.058 Sum_probs=14.1
Q ss_pred hccCCchHHHHHHHHHHHHHHH
Q 034652 56 MYFPTCPQEALLLQQDIKEAKE 77 (88)
Q Consensus 56 ~tFnDcpeA~~eL~~eI~eAk~ 77 (88)
.++.|.+|+-+.+|+-|.-||+
T Consensus 16 ~R~GDk~EEv~~Ir~~I~nakk 37 (154)
T PF11576_consen 16 TRRGDKEEEVEAIREYILNAKK 37 (154)
T ss_dssp ---S--HHHHHHHHHHHHH-S-
T ss_pred cccCCcHHHHHHHHHHHhcCce
Confidence 4688999999999999999853
No 415
>PRK10527 hypothetical protein; Provisional
Probab=20.32 E-value=3e+02 Score=18.93 Aligned_cols=15 Identities=13% Similarity=0.487 Sum_probs=9.4
Q ss_pred cccCccccchhHHHHHHHHH
Q 034652 24 TSVIPRSHTGLLPIYFIVSL 43 (88)
Q Consensus 24 ~~l~p~~~~~~lP~~~lv~f 43 (88)
.+++| -.||+.|-++
T Consensus 23 LPlLP-----TTPFlLLAa~ 37 (125)
T PRK10527 23 LPLLP-----TTPFILLAAW 37 (125)
T ss_pred ccCCC-----CcHHHHHHHH
Confidence 55566 7787766544
No 416
>PRK11478 putative lyase; Provisional
Probab=20.27 E-value=69 Score=19.86 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCcc
Q 034652 71 DIKEAKEYLERKGIDV 86 (88)
Q Consensus 71 eI~eAk~dL~~kG~~~ 86 (88)
+++++.+.|+++|+++
T Consensus 85 d~~~~~~~l~~~G~~~ 100 (129)
T PRK11478 85 DIDAAVAHLESHNVKC 100 (129)
T ss_pred CHHHHHHHHHHcCCee
Confidence 5778888899999875
No 417
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.24 E-value=84 Score=21.80 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=16.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGID 85 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~~ 85 (88)
.|++.|. |.||=..||++|+.
T Consensus 117 ~f~~~p~--------~~~~Y~~Lk~~G~i 137 (139)
T cd03567 117 ELPHEPK--------IKEAYDMLKKQGII 137 (139)
T ss_pred Hhcccch--------HHHHHHHHHHCCCc
Confidence 4566665 78889999999974
No 418
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.24 E-value=1.3e+02 Score=23.48 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=22.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHhc-CCc
Q 034652 60 TCPQEALLLQQDIKEAKEYLERK-GID 85 (88)
Q Consensus 60 DcpeA~~eL~~eI~eAk~dL~~k-G~~ 85 (88)
|+.+-++++.+||++.=+.|+++ |++
T Consensus 6 ~Gk~~a~~i~~~i~~~v~~l~~~~g~~ 32 (296)
T PRK14188 6 DGKAFAADVRATVAAEVARLKAAHGVT 32 (296)
T ss_pred EHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 67888999999999999999888 653
No 419
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=20.23 E-value=74 Score=22.48 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcCCccC
Q 034652 70 QDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~d 87 (88)
++.++-.+.||++|++++
T Consensus 156 ~~~~~~~~~L~~~Gvdv~ 173 (179)
T PF06757_consen 156 PEFQRLLNELRENGVDVD 173 (179)
T ss_pred HHHHHHHHHHHHcCCCHH
Confidence 567778889999999985
No 420
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=20.19 E-value=75 Score=22.46 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=27.6
Q ss_pred HHHHhhhccCC-chHHHHHHHHHHH------------------HHHHHHHhcCCccC
Q 034652 50 MVGIGLMYFPT-CPQEALLLQQDIK------------------EAKEYLERKGIDVS 87 (88)
Q Consensus 50 ~vgy~v~tFnD-cpeA~~eL~~eI~------------------eAk~dL~~kG~~~d 87 (88)
.-+|.+.++.| .||.-+++.++-. .=+++|+++|+.+|
T Consensus 44 v~~W~v~~~~~Lt~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve 100 (127)
T COG3737 44 VCDWEVATLSDLTPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVE 100 (127)
T ss_pred cccccccChhhCCHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccc
Confidence 35688888888 5777777666544 45688999998876
No 421
>PF01340 MetJ: Met Apo-repressor, MetJ; InterPro: IPR002084 Binding of a specific DNA fragment and S-adenosyl methionine (SAM) co-repressor molecules to the Escherichia coli methionine repressor (MetJ) leads to a significant reduction in dynamic flexibility of the ternary complex, with considerable entropy-enthalpy compensation, not necessarily involving any overall conformational change []. MetJ is a regulatory protein which when combined with S-adenosylmethionine (SAM) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. It is also autoregulated. The crystal structure of the met repressor-operator complex shows two dimeric repressor molecules bound to adjacent sites 8 base pairs apart on an 18-base-pair DNA fragment. Sequence specificity is achieved by insertion of double-stranded antiparallel protein beta-ribbons into the major groove of B-form DNA, with direct hydrogen-bonding between amino-acid side chains and the base pairs. The repressor also recognises sequence-dependent distortion or flexibility of the operator phosphate backbone, conferring specificity even for inaccessible base pairs [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006555 methionine metabolic process; PDB: 1MJO_D 1CMB_A 1MJQ_C 1CMC_B 1MJK_A 1MJ2_A 1MJP_A 1MJM_B 1CMA_B 1MJL_A ....
Probab=20.16 E-value=91 Score=21.16 Aligned_cols=16 Identities=50% Similarity=0.650 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCccCC
Q 034652 73 KEAKEYLERKGIDVSE 88 (88)
Q Consensus 73 ~eAk~dL~~kG~~~d~ 88 (88)
++||+-+++.|+++++
T Consensus 86 ~~~~~~m~~~gi~~~~ 101 (104)
T PF01340_consen 86 AEAKRIMEEMGIDPEE 101 (104)
T ss_dssp HHHHHHHHHTT--TTT
T ss_pred HHHHHHHHHhCCChhh
Confidence 4677778888888774
No 422
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=20.15 E-value=2.3e+02 Score=21.35 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=27.4
Q ss_pred HHHhhhccCCchHHHHHH------HHHHHHHHHHHHhcCCcc
Q 034652 51 VGIGLMYFPTCPQEALLL------QQDIKEAKEYLERKGIDV 86 (88)
Q Consensus 51 vgy~v~tFnDcpeA~~eL------~~eI~eAk~dL~~kG~~~ 86 (88)
.|+.+..-++-+|+.+|+ .++++.+-+..+++|+++
T Consensus 234 ~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~ 275 (308)
T PRK14619 234 VGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAV 275 (308)
T ss_pred HHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCC
Confidence 455555666777777777 678889999999999875
No 423
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=20.13 E-value=89 Score=18.71 Aligned_cols=17 Identities=29% Similarity=0.640 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCCcc
Q 034652 70 QDIKEAKEYLERKGIDV 86 (88)
Q Consensus 70 ~eI~eAk~dL~~kG~~~ 86 (88)
++++++.+.|+++|+++
T Consensus 85 ~dl~~~~~~l~~~g~~~ 101 (128)
T PF00903_consen 85 DDLDAAYERLKAQGVEI 101 (128)
T ss_dssp HHHHHHHHHHHHTTGEE
T ss_pred HHHHHHHHHHhhcCccE
Confidence 46788888888888765
No 424
>PF15071 TMEM220: Transmembrane family 220, helix
Probab=20.08 E-value=1.9e+02 Score=19.10 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 034652 69 QQDIKEAKEYL 79 (88)
Q Consensus 69 ~~eI~eAk~dL 79 (88)
.-++||+|+.+
T Consensus 78 ~~~~EegRE~~ 88 (104)
T PF15071_consen 78 KPHIEEGREFF 88 (104)
T ss_pred chhHHHHHHHH
Confidence 34678888764
No 425
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=20.06 E-value=70 Score=25.51 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=23.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652 57 YFPTCPQEALLLQQDIKEAKEYLERKGIDVS 87 (88)
Q Consensus 57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d 87 (88)
++-|.+.-..||.++|+|-|+.-...+++++
T Consensus 4 ~~l~fe~~i~~l~~~i~~l~~~~~~~~~~~~ 34 (319)
T PRK05724 4 NYLDFEKPIAELEAKIEELRAVAEDSDVDLS 34 (319)
T ss_pred chhhhhhHHHHHHHHHHHHHhhhccccccHH
Confidence 5668888999999999998875555566553
No 426
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=20.01 E-value=68 Score=19.49 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCCcc
Q 034652 71 DIKEAKEYLERKGIDV 86 (88)
Q Consensus 71 eI~eAk~dL~~kG~~~ 86 (88)
+++++.+.|+++|+++
T Consensus 67 d~~~~~~~l~~~G~~~ 82 (112)
T cd07238 67 DVDAALARAVAAGFAI 82 (112)
T ss_pred CHHHHHHHHHhcCCeE
Confidence 4677778888888875
No 427
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.00 E-value=85 Score=19.62 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCc
Q 034652 71 DIKEAKEYLERKGID 85 (88)
Q Consensus 71 eI~eAk~dL~~kG~~ 85 (88)
+|+++-+.|+++|+.
T Consensus 65 did~~~~~l~~~G~~ 79 (113)
T cd08356 65 DLEAYYEHIKALGLP 79 (113)
T ss_pred CHHHHHHHHHHcCCc
Confidence 566677777777765
Done!