BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034653
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q49413|HMW1_MYCGE Cytadherence high molecular weight protein 1 OS=Mycoplasma
           genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
           GN=hmw1 PE=3 SV=1
          Length = 1139

 Score = 30.0 bits (66), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 11  DSKHQKRVLSLYRQILRSLNSPKLELSLAARLAKKAEARAIFMVGSEER 59
           DSK   + LS+  Q + SLN+  +  S + RL KK +   I  V SE++
Sbjct: 762 DSKTLAKTLSVQLQQINSLNNQSIVTSESVRLDKKDDQLTINTVNSEDQ 810


>sp|Q8CXP5|HSLO_OCEIH 33 kDa chaperonin OS=Oceanobacillus iheyensis (strain DSM 14371 /
           JCM 11309 / KCTC 3954 / HTE831) GN=hslO PE=3 SV=1
          Length = 289

 Score = 29.6 bits (65), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 53  MVGSEERSIHNIQDLIDTAEYALSLLKEGKIPKHI 87
           M G+EE  I+ ++D I       SL++EGK P+ I
Sbjct: 181 MPGAEEEVINELEDQIQAIPAISSLIREGKSPEEI 215


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.131    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,350,124
Number of Sequences: 539616
Number of extensions: 754321
Number of successful extensions: 2621
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2618
Number of HSP's gapped (non-prelim): 6
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)