BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034655
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans
Isomerase With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans
Isomerase With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 9 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGHVIK 64
Query: 62 GWDEGVMGMQVGEVARLRTKP 82
GWDEGV GM+VG V RL P
Sbjct: 65 GWDEGVQGMKVGGVRRLTIPP 85
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFGSSKDR-NDPFAFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRTKP 82
GWDEGV GM+VG V RL P
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPP 181
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRTKP 82
GWDEGV GM+VG V RL P
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPP 181
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRTKP 82
GWDEGV GM+VG V RL P
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPP 181
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRTKP 82
GWDEGV GM+VG V RL P
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPP 181
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans
Isomerase With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans
Isomerase With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 9 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 64
Query: 62 GWDEGVMGMQVGEVARLRTKP 82
GWDEGV GM+VG V RL P
Sbjct: 65 GWDEGVQGMKVGGVRRLTIPP 85
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 29 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 84
Query: 62 GWDEGVMGMQVGEVARLRTKP 82
GWDEGV GM+VG V RL P
Sbjct: 85 GWDEGVQGMKVGGVRRLTIPP 105
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 13 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFAFVLGGGMVIK 68
Query: 62 GWDEGVMGMQVGEVARLRTKP 82
GWDEGV GM+VG V RL P
Sbjct: 69 GWDEGVQGMKVGGVRRLTIPP 89
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ + LT G+G + AGQ V+VH TG+ +G QKF S+KD PF F +G G VIK
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDG---QKFDSSKDR-NDPFEFVLGGGMVIK 160
Query: 62 GWDEGVMGMQVGEVARLRTKP 82
GWDEGV GM+VG V RL P
Sbjct: 161 GWDEGVQGMKVGGVRRLTIPP 181
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease
Target Gilaa.00840.A
Length = 130
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 5/75 (6%)
Query: 3 IEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
+EK++LTPG+G KP AG+KVTVH G +G ++F S++ G+ PF F +G G VIK
Sbjct: 26 LEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDG---KQFDSSRSRGK-PFQFTLGAGEVIK 81
Query: 62 GWDEGVMGMQVGEVA 76
GWD+GV M +GE A
Sbjct: 82 GWDQGVATMTLGEKA 96
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And
Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 1 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSV 59
MG++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK V
Sbjct: 2 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDR-NKPFKFMLGKQEV 57
Query: 60 IKGWDEGVMGMQVGEVARLRTKPSSS 85
I+GW+EGV M VG+ A+L P +
Sbjct: 58 IRGWEEGVAQMSVGQRAKLTISPDYA 83
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P AGQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDG---KKFDSSRDR-NKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
+GW+EGV M VG+ A+L P +
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYA 81
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 91
Query: 61 KGWDEGVMGMQVGEVARLRTKP 82
K WD GV M+ GE+ L KP
Sbjct: 92 KAWDIGVATMKKGEICHLLCKP 113
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 91
Query: 61 KGWDEGVMGMQVGEVARLRTKP 82
K WD GV M+ GE+ L KP
Sbjct: 92 KAWDIGVATMKKGEICHLLCKP 113
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 20 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 75
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
K WD GV M+ GE+ L KP +
Sbjct: 76 KAWDIGVATMKKGEICHLLCKPEYA 100
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 20 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 75
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
K WD GV M+ GE+ L KP +
Sbjct: 76 KAWDIGVATMKKGEICHLLCKPEYA 100
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 91
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
K WD GV M+ GE+ L KP +
Sbjct: 92 KAWDIGVATMKKGEICHLLCKPEYA 116
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + GNG + P+ G KV VH G NG +KF S+ D +PF F +GKG VI
Sbjct: 32 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNG---KKFDSSHDR-NEPFVFSLGKGQVI 87
Query: 61 KGWDEGVMGMQVGEVARLRTKP 82
K WD GV M+ GE+ L KP
Sbjct: 88 KAWDIGVATMKRGEICHLLCKP 109
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+E + ++PG+G P GQ VH TG +NG +KF S++D +PF F+IGK VI
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNG---KKFDSSRDR-NKPFKFRIGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
KG++EG M +G+ A+L P +
Sbjct: 57 KGFEEGAAQMSLGQRAKLTCTPDVA 81
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDK-NKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
+GW+EGV M VG+ A+L P +
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYA 81
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type
I Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex
With Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex
With Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of
The Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of
The Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And
Receptor For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And
Receptor For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And
Receptor For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin
Complexed With Fkbp12: Is The Cyclohexyl Moiety Part Of
The Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin
Complex Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDR-NKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
+GW+EGV M VG+ A+L P +
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYA 81
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDR-NKPFKFVLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
+GW+EGV M VG+ A+L P +
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYA 81
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDR-NKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
+GW EGV M VG+ A+L P +
Sbjct: 57 RGWQEGVAQMSVGQRAKLTISPDYA 81
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDR-NKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
+GW EGV M VG+ A+L P +
Sbjct: 57 RGWAEGVAQMSVGQRAKLTISPDYA 81
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 58.5 bits (140), Expect = 9e-10, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K + G+G + P+ G +V VH G NG +KF S+ D +PF F IGKG VI
Sbjct: 32 GVLKIVKRVGHGEETPMIGDRVYVHYNGKLANG---KKFDSSHDR-NEPFVFSIGKGQVI 87
Query: 61 KGWDEGVMGMQVGEVARLRTKP 82
K WD GV M+ GE+ L KP
Sbjct: 88 KAWDIGVATMKKGEICHLLCKP 109
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 1 MGIEKQILTPGN-GPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSV 59
MG++ L G+ P AGQ VH TG +G + F S++ G+ PF F +G+G V
Sbjct: 1 MGVQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKV---FDSSRTRGK-PFRFTVGRGEV 56
Query: 60 IKGWDEGVMGMQVGEVARLRTKPSSS 85
I+GWDEGV M VG+ A+L P +
Sbjct: 57 IRGWDEGVAQMSVGQRAKLVCSPDYA 82
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin
Fkbp- 12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of
High-Affinity Fkbp Ligands, And The X-Ray Crystal
Structures Of Their Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of
High-Affinity Fkbp Ligands, And The X-Ray Crystal
Structures Of Their Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of
High-Affinity Fkbp Ligands, And The X-Ray Crystal
Structures Of Their Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of
High-Affinity Fkbp Ligands, And The X-Ray Crystal
Structures Of Their Complexes With Fkbp12
Length = 107
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 3 IEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI+
Sbjct: 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRD-RNKPFKFMLGKQEVIR 57
Query: 62 GWDEGVMGMQVGEVARLRTKPSSS 85
GW+EGV M VG+ A+L P +
Sbjct: 58 GWEEGVAQMSVGQRAKLTISPDYA 81
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type
Peptidylprolyl Isomerase
Length = 135
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 2 GIEKQILTPGNGP-KPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G KP G V VH G +NG KF S++D G Q F+F +G+G+VI
Sbjct: 15 GVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENG---TKFDSSRDRGDQ-FSFNLGRGNVI 70
Query: 61 KGWDEGVMGMQVGEVARLRTK 81
KGWD GV M GEVA +
Sbjct: 71 KGWDLGVATMTKGEVAEFTIR 91
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With
Rapamycin
Length = 107
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDR-NKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
+G++EGV M VG+ A+L P +
Sbjct: 57 RGFEEGVAQMSVGQRAKLTISPDYA 81
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +K S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKMDSSRDR-NKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
+GW+EGV M VG+ A+L P +
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYA 81
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic
Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic
Ligand
Length = 107
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +K S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKVDSSRDR-NKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
+GW+EGV M VG+ A+L P +
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYA 81
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With
Rapamycin
Length = 107
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G++ + ++PG+G P GQ VH TG ++G +KF S++D +PF F +GK VI
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDG---KKFDSSRDR-NKPFKFMLGKQEVI 56
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
+G +EGV M VG+ A+L P +
Sbjct: 57 RGLEEGVAQMSVGQRAKLTISPDYA 81
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G + P+ G +V VH TG+ +G KF S+ D + F+F +GKG VI
Sbjct: 31 GVLKVIKREGTGTETPMIGDRVFVHYTGWLLDG---TKFDSSLD-RKDKFSFDLGKGEVI 86
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
K WD V M+VGE+ R+ KP +
Sbjct: 87 KAWDIAVATMKVGELCRITCKPEYA 111
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 8 LTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEG 66
++PG+G P G VT+H TG +NG QKF S+ D G PF IG G VIKGWD G
Sbjct: 13 ISPGDGATFPKTGDLVTIHYTGTLENG---QKFDSSVDRGS-PFQCNIGVGQVIKGWDVG 68
Query: 67 VMGMQVGEVARL 78
+ + VGE ARL
Sbjct: 69 IPKLSVGEKARL 80
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G + P+ G +V VH TG+ +G KF S+ D + F+F +GKG VI
Sbjct: 32 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG---TKFDSSLD-RKDKFSFDLGKGEVI 87
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
K WD + M+VGEV + KP +
Sbjct: 88 KAWDIAIATMKVGEVCHITCKPEYA 112
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G + P+ G +V VH TG+ +G KF S+ D + F+F +GKG VI
Sbjct: 36 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG---TKFDSSLD-RKDKFSFDLGKGEVI 91
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
K WD + M+VGEV + KP +
Sbjct: 92 KAWDIAIATMKVGEVCHITCKPEYA 116
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ K I G G + P+ G +V VH TG+ +G KF S+ D + F+F +GKG VI
Sbjct: 52 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG---TKFDSSLDR-KDKFSFDLGKGEVI 107
Query: 61 KGWDEGVMGMQVGEVARLRTKPSSS 85
K WD + M+VGEV + KP +
Sbjct: 108 KAWDIAIATMKVGEVCHITCKPEYA 132
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 11 GNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMG 69
G GP+ V GQ + H G +NG + F S+ + G+ P TF+IG G VIKGWD+G++G
Sbjct: 22 GYGPEAVKGQLIKAHYVGKLENGKV---FDSSYNRGK-PLTFRIGVGEVIKGWDQGILG 76
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 16 PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEV 75
P G +V VH TG +G +KF S++D F F++G+G VIKGWD+G+ M+ GE
Sbjct: 43 PEVGDEVEVHYTGTLLDG---KKFDSSRD-RDDTFKFKLGQGQVIKGWDQGIKTMKKGEN 98
Query: 76 ARLRTKPS 83
A P
Sbjct: 99 ALFTIPPE 106
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 3 IEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
I K++L G +P G VTV TG ++G + F Q+PF F+ + +VI+
Sbjct: 262 ILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTV---FLKKGHDEQEPFEFKTDEEAVIE 318
Query: 62 GWDEGVMGMQVGEVARLRTKPSSS 85
G D V+ M+ GEVA + P +
Sbjct: 319 GLDRAVLNMKKGEVALVTIPPEYA 342
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 16 PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEV 75
P G +V VH TG +G +KF S++D F F++G+G VIKGWD+G+ M+ GE
Sbjct: 27 PEVGDEVEVHYTGTLLDG---KKFDSSRD-RDDTFKFKLGQGQVIKGWDQGIKTMKKGEN 82
Query: 76 ARLRTKPS 83
A P
Sbjct: 83 ALFTIPPE 90
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 3 IEKQILTPGNG-PKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
I K++L G +P G VTV TG ++G + F Q+PF F+ + +VI+
Sbjct: 246 ILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTV---FLKKGHDEQEPFEFKTDEEAVIE 302
Query: 62 GWDEGVMGMQVGEVARLRTKPSSS 85
G D V+ M+ GEVA + P +
Sbjct: 303 GLDRAVLNMKKGEVALVTIPPEYA 326
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 24 VHC--TGYGKNG---DLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
VHC TG ++G D + + + K +P +F++G G VI+GWDE ++ M GE ARL
Sbjct: 23 VHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARL 82
Query: 79 RTKPS 83
+P
Sbjct: 83 EIEPE 87
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 24 VHC--TGYGKNG---DLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
VHC TG +G D + + S K +P +F++G G VI+GWDE ++ M GE ARL
Sbjct: 26 VHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARL 85
Query: 79 RTKPS 83
+P
Sbjct: 86 EIEPE 90
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 15 KPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGE 74
K G + +H TG ++G + + P QPF F +G G VIKGWD+G++GM GE
Sbjct: 5 KSRKGDVLHMHYTGKLEDG----TEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGE 60
Query: 75 VARL 78
+L
Sbjct: 61 KRKL 64
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In
Complex With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In
Complex With Tetrapeptide Alpf
Length = 126
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 2 GIEKQILTPGNGPK---PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS 58
G+ K IL G G + P G +VTVH G ++ S K + + PF F +G+G
Sbjct: 16 GVVKTILRKGEGGEENAPKKGNEVTVHYVGKLES---SGKVFDSSRERNVPFKFHLGQGE 72
Query: 59 VIKGWDEGVMGMQVGEVARLR 79
VIKGWD V M E +R
Sbjct: 73 VIKGWDICVASMTKNEKCSVR 93
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 19 GQKVTVHCTGY-GKNGDLSQKFWST-KDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVA 76
G + VH GY K+G L F ST K QP F +G +KGWD+G+ GM VGE
Sbjct: 32 GDLMLVHYEGYLEKDGSL---FHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKR 88
Query: 77 RLRTKPS 83
+L P+
Sbjct: 89 KLIIPPA 95
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 2 GIEKQILTPGNGPK---PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS 58
G+ K IL G+ + P G +VTVH G ++ + K + + PF F + +G
Sbjct: 17 GVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES---TGKVFDSSFDRNVPFKFHLEQGE 73
Query: 59 VIKGWDEGVMGMQVGEVARLRTKP 82
VIKGWD V M+ E +R +
Sbjct: 74 VIKGWDICVSSMRKNEKCLVRIES 97
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of
Fkbp35 From Plasmodium Falciparum
Length = 135
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 2 GIEKQILTPGNGPK---PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGS 58
G+ K IL G+ + P G +VTVH G ++ + K + + PF F + +G
Sbjct: 17 GVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES---TGKVFDSSFDRNVPFKFHLEQGE 73
Query: 59 VIKGWDEGVMGMQVGEVARLRTKP 82
VIKGWD V M+ E +R +
Sbjct: 74 VIKGWDICVSSMRKNEKCLVRIES 97
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ +++ GNG KP VTV TG +G + F ST+ G +P TFQ+ + VI
Sbjct: 107 GLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTV---FDSTEKTG-KPATFQVSQ--VIP 160
Query: 62 GWDEGVMGMQVG 73
GW E + M G
Sbjct: 161 GWTEALQLMPAG 172
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 3 IEKQILTPG--NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
+ K+ L PG +PV GQ VTVH +NG Q+ + F +G VI
Sbjct: 13 LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE--------EPELVFTLGDCDVI 64
Query: 61 KGWDEGVMGMQVGEVA 76
+ D V M VGE A
Sbjct: 65 QALDLSVPLMDVGETA 80
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human
Fk506-Binding Protein 8
Length = 118
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 3 IEKQILTPG--NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
+ K+ L PG +PV GQ VTVH +NG Q+ + F +G VI
Sbjct: 15 LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE--------EPELVFTLGDCDVI 66
Query: 61 KGWDEGVMGMQVGEVA 76
+ D V M VGE A
Sbjct: 67 QALDLSVPLMDVGETA 82
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 3 IEKQILTPG--NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
+ K+ L PG +PV GQ VTVH +NG Q+ + F +G VI
Sbjct: 45 LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE--------EPELVFTLGDCDVI 96
Query: 61 KGWDEGVMGMQVGEVA 76
+ D V M VGE A
Sbjct: 97 QALDLSVPLMDVGETA 112
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G++ +++ GNG KP VTV TG +G + F ST+ G +P TFQ+ + VI
Sbjct: 31 GLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTV---FDSTEKTG-KPATFQVSQ--VIP 84
Query: 62 GWDEGVMGMQVG 73
GW E + M G
Sbjct: 85 GWTEALQLMPAG 96
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 3 IEKQILTPG--NGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
+ K+ L PG +PV GQ VTVH +NG Q+ + F +G VI
Sbjct: 19 LRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE--------EPELVFTLGDCDVI 70
Query: 61 KGWDEGVMGMQVGEVA 76
+ D V M VGE A
Sbjct: 71 QALDLSVPLMDVGETA 86
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
GI LTPG GPKP A +V V G +G + D QP F++ SVI
Sbjct: 118 GILMTELTPGTGPKPDANGRVEVRYVGRLPDGKIF-------DQSTQPQWFRL--DSVIS 168
Query: 62 GWDEGVMGMQVGEVARL 78
GW + M G RL
Sbjct: 169 GWTSALQNMPTGAKWRL 185
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 2 GIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVI 60
G+ Q + G+G + P K VH TG ++G + F S+++ G+ P TF+ VI
Sbjct: 38 GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTV---FDSSRERGK-PTTFR--PNEVI 91
Query: 61 KGWDEGVMGMQVGEVARL 78
KGW E + M+ G+ RL
Sbjct: 92 KGWTEALQLMREGDRWRL 109
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 44 DPGQQPFTFQIGKGSVIKGWDEGVMGMQVGE 74
D +P F +G+G +I+G++E V+ M+VG+
Sbjct: 39 DREYEPLEFVVGEGQLIQGFEEAVLDMEVGD 69
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 2 GIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIK 61
G+ K ++ G G V V +GY ++ D + + + + P ++G+ +
Sbjct: 27 GVLKDVIREGAGDLVAPDASVLVKYSGYLEHMD---RPFDSNYFRKTPRLMKLGEDITLW 83
Query: 62 GWDEGVMGMQVGEVARLRTKPSSS 85
G + G++ M+ GE+AR KP+ +
Sbjct: 84 GMELGLLSMRRGELARFLFKPNYA 107
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 3 IEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGK-GSVIK 61
+ KQI+ G+G KP +H + KN KF T QQP +GK +
Sbjct: 51 VSKQIIKEGHGSKPSKYSTCFLHYRAWTKNS--QHKFEDTWHE-QQPIELVLGKEKKELA 107
Query: 62 GWDEGVMGMQVGEVA 76
G GV M+ GE A
Sbjct: 108 GLAIGVASMKSGERA 122
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 3 IEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGK-GSVIK 61
+ KQI+ G+G KP +H + KN KF T QQP +GK +
Sbjct: 51 VSKQIIKEGHGSKPSKYSTCFLHYRAWTKNS--QHKFEDTWHE-QQPIELVLGKEKKELA 107
Query: 62 GWDEGVMGMQVGEVARLRT 80
G GV M+ GE A +
Sbjct: 108 GLAIGVASMKSGERALVHV 126
>pdb|3T0V|A Chain A, Unliganded Fluorogen Activating Protein M8vl
pdb|3T0W|A Chain A, Fluorogen Activating Protein M8vl In Complex With
Dimethylindole Red
pdb|3T0W|B Chain B, Fluorogen Activating Protein M8vl In Complex With
Dimethylindole Red
Length = 123
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQKVT+ C+G N + + +W + PG P G + G + G A L
Sbjct: 15 GQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASL 74
>pdb|3T0X|A Chain A, Fluorogen Activating Protein M8vla4(S55p) In Complex
With Dimethylindole Red
pdb|3T0X|B Chain B, Fluorogen Activating Protein M8vla4(S55p) In Complex
With Dimethylindole Red
Length = 123
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQKVT+ C+G N + + +W + PG P
Sbjct: 15 GQKVTIFCSGSSSNVEDNSVYWYQQFPGTTP 45
>pdb|3C2A|L Chain L, Antibody Fab Fragment 447-52d In Complex With Ug1033
Peptide
pdb|3C2A|M Chain M, Antibody Fab Fragment 447-52d In Complex With Ug1033
Peptide
pdb|3GHB|L Chain L, Crystal Structure Of Anti-Hiv-1 Fab 447-52d In Complex
With V3 Peptide W2rw020
pdb|3GHB|M Chain M, Crystal Structure Of Anti-Hiv-1 Fab 447-52d In Complex
With V3 Peptide W2rw020
Length = 216
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 24/60 (40%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQKVT+ C+G N + W + PG P G G + G + G A L
Sbjct: 15 GQKVTISCSGSSSNIGNNYVLWYQQFPGTAPKLLIYGNNKRPSGIPDRFSGSKSGTSATL 74
>pdb|1Q1J|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 Fab 447-52d In
Complex With V3 Peptide
pdb|1Q1J|M Chain M, Crystal Structure Analysis Of Anti-Hiv-1 Fab 447-52d In
Complex With V3 Peptide
Length = 215
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 24/60 (40%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQKVT+ C+G N + W + PG P G G + G + G A L
Sbjct: 15 GQKVTISCSGSSSNIGNNYVLWYQQFPGTAPKLLIYGNNKRPSGIPDRFSGSKSGTSATL 74
>pdb|3MLW|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 1006-15d In
Complex With An Mn V3 Peptide
pdb|3MLW|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 1006-15d In
Complex With An Mn V3 Peptide
Length = 215
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARL 78
GQ+VT+ C+G N + + +W + PG P G + G + G A L
Sbjct: 15 GQRVTISCSGNSSNIENNYVYWYQQLPGSTPKLLIFRDDQRPSGVPDRFSGSKSGTSASL 74
>pdb|4D9L|L Chain L, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
pdb|4D9L|M Chain M, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
pdb|4D9L|N Chain N, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
pdb|4D9L|O Chain O, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
Length = 215
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 19 GQKVTVHCTGYGKN-GDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVAR 77
GQ+VT+ CTG N G W + PG P G + G + G + G A
Sbjct: 15 GQRVTISCTGSSSNIGAHYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSAS 74
Query: 78 L 78
L
Sbjct: 75 L 75
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 19 GQKVTVHCTGY--GKNGDLSQKFWSTKD----PGQQ--PFTFQIGKGSVIKGWDEGVMGM 70
G+ V + GY GK D + + + K+ P P G+G V+ G DE ++ M
Sbjct: 5 GKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEM 64
Query: 71 QVGEVARLRTKPSSS 85
VGE + P +
Sbjct: 65 DVGEEREVVLPPEKA 79
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 19 GQKVTVHCTGY--GKNGDLSQKFWSTKD----PGQQ--PFTFQIGKGSVIKGWDEGVMGM 70
G+ V + GY GK D + + + K+ P P G+G V+ G DE ++ M
Sbjct: 5 GKMVKISYDGYVDGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEM 64
Query: 71 QVGE 74
VGE
Sbjct: 65 DVGE 68
>pdb|4G6F|L Chain L, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|D Chain D, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 215
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 8 LTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGV 67
LT G G+ VT+ C G + W K PGQ P GK + G +
Sbjct: 4 LTQETGVSVALGRTVTITCRGDSLRSHYAS--WYQKKPGQAPILLFYGKNNRPSGVPDRF 61
Query: 68 MGMQVGEVARL 78
G G A L
Sbjct: 62 SGSASGNRASL 72
>pdb|4FQK|F Chain F, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059
COMPLEX
pdb|4FQK|L Chain L, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059
COMPLEX
Length = 216
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ C+G N + +W + PG P
Sbjct: 15 GQRVTISCSGSSSNIGTNYVYWYQQFPGTAP 45
>pdb|4FQJ|L Chain L, Influenza BFLORIDA42006 HEMAGGLUTININ FAB CR8071 COMPLEX
Length = 216
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ C+G N + +W + PG P
Sbjct: 15 GQRVTISCSGSSSNIGTNYVYWYQQFPGTAP 45
>pdb|2XQB|L Chain L, Crystal Structure Of Anti-Il-15 Antibody In Complex With
Human Il-15
Length = 211
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ C+G N + +W + PG P
Sbjct: 11 GQRVTISCSGSTSNLKRNYVYWYQQLPGTAP 41
>pdb|2A9M|L Chain L, Structural Analysis Of A Tight-Binding Fluorescein-Scfv;
Apo Form
pdb|2A9M|M Chain M, Structural Analysis Of A Tight-Binding Fluorescein-Scfv;
Apo Form
pdb|2A9N|L Chain L, A Mutation Designed To Alter Crystal Packing Permits
Structural Analysis Of A Tight-Binding Fluorescein-Scfv
Complex
pdb|2A9N|M Chain M, A Mutation Designed To Alter Crystal Packing Permits
Structural Analysis Of A Tight-Binding Fluorescein-Scfv
Complex
Length = 110
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 7 ILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
+LT + GQKVT+ C+G N + W + PG+ P
Sbjct: 2 VLTQPSSVSAAPGQKVTISCSGSTSNIGNNYVSWYQQHPGKAP 44
>pdb|3P30|L Chain L, Crystal Structure Of The Cluster Ii Fab 1281 In Complex
With Hiv-1 Gp41 Ectodomain
Length = 213
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ C+G N + +W + PG P
Sbjct: 15 GQRVTISCSGSSSNIGNNYVYWYQQLPGTAP 45
>pdb|3H42|L Chain L, Crystal Structure Of Pcsk9 In Complex With Fab From Ldlr
Competitive Antibody
Length = 217
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 19 GQKVTVHCTGYGKN-GDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVAR 77
GQ+VT+ CTG N G W + PG P G + G + G + G A
Sbjct: 15 GQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLISGNSNRPSGVPDRFSGSKSGTSAS 74
Query: 78 L 78
L
Sbjct: 75 L 75
>pdb|3MLX|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With An Mn V3 Peptide
pdb|3MLX|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With An Mn V3 Peptide
Length = 211
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQKVT+ C+G N + W + PG P
Sbjct: 14 GQKVTISCSGSSSNIGNNMVSWYQQHPGTAP 44
>pdb|2RHE|A Chain A, Structure Of A Novel Bence-Jones Protein (Rhe) Fragment
At 1.6 Angstroms Resolution
Length = 114
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ CTG + + W + PG+ P
Sbjct: 15 GQRVTISCTGSATDIGSNSVIWYQQVPGKAP 45
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 52 FQIGKGSVIKGWD------EGVMGMQVGEVARLRTKPSSSPWW 88
F +G+G+ I D G +GM V +V P+ SP W
Sbjct: 227 FNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLW 269
>pdb|3MLY|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With A Ur29 V3 Peptide
pdb|3MLY|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With A Ur29 V3 Peptide
pdb|3MLZ|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 3074 In Complex
With A Vi191 V3 Peptide
Length = 214
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQKVT+ C+G N + W + PG P
Sbjct: 15 GQKVTISCSGSSSNIGNNMVSWYQQHPGTAP 45
>pdb|2B0S|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Mn Peptide
pdb|2B1A|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug1033 Peptide
pdb|2B1H|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug29 Peptide
Length = 215
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ++++ C+G N + + +W PG P
Sbjct: 15 GQRISISCSGTSSNVENNYVYWYQHLPGTAP 45
>pdb|2FB4|L Chain L, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
pdb|2IG2|L Chain L, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 216
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQ+VT+ C+G N S W + PG P
Sbjct: 15 GQRVTISCSGTSSNIGSSTVNWYQQLPGMAP 45
>pdb|1JVK|A Chain A, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1JVK|B Chain B, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1LGV|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LGV|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LHZ|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
pdb|1LHZ|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
Length = 216
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 19 GQKVTVHCTGYGK-NGDLSQKFWSTKDPGQQP--FTFQIGK 56
GQ +TV CTG G + W + PG+ P T+++ K
Sbjct: 15 GQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNK 55
>pdb|3MA9|L Chain L, Crystal Structure Of Gp41 Derived Protein Complexed With
Fab 8066
pdb|3MAC|L Chain L, Crystal Structure Of Gp41-Derived Protein Complexed With
Fab 8062
Length = 213
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 17 VAGQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVA 76
V GQ + C+G N W + PGQ P G + G E G G A
Sbjct: 13 VPGQTARISCSG--DNIPYEYASWYQQKPGQAPVLVIYGDNNRPSGIPERFSGSNSGNTA 70
Query: 77 RL 78
L
Sbjct: 71 TL 72
>pdb|1NL0|L Chain L, Crystal Structure Of Human Factor Ix Gla Domain In
Complex Of An Inhibitory Antibody, 10c12
Length = 213
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQKVT+ C+G N + W + PG+ P
Sbjct: 15 GQKVTISCSGSTSNIGNNYVSWYQQHPGKAP 45
>pdb|3D69|L Chain L, Crystal Structure Of The Fab Fragment Of An Anti-Factor
Ix Antibody 10c12
pdb|3D69|A Chain A, Crystal Structure Of The Fab Fragment Of An Anti-Factor
Ix Antibody 10c12
Length = 216
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 19 GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQP 49
GQKVT+ C+G N + W + PG+ P
Sbjct: 15 GQKVTISCSGSTSNIGNNYVSWYQQHPGKAP 45
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
pdb|3NZP|B Chain B, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
Length = 619
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 14 PKPVAGQKVTVHCTGYG---KNGDLSQKF 39
PKP G +V +H G G K+G ++ KF
Sbjct: 176 PKPNIGLRVRLHSAGVGIWAKSGGINSKF 204
>pdb|1CD0|A Chain A, Structure Of Human Lamda-6 Light Chain Dimer Jto
pdb|1CD0|B Chain B, Structure Of Human Lamda-6 Light Chain Dimer Jto
Length = 111
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 12 NGPKPVA---GQKVTVHCTGYGKNGDLSQKFWSTKDPGQQPFT 51
N P V+ G+ VT+ CT N D + W + PG P T
Sbjct: 5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPIT 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.135 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,161,586
Number of Sequences: 62578
Number of extensions: 127365
Number of successful extensions: 318
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 117
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)