BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034656
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NTV|A Chain A, Mycobacterium Leprae Inha Bound With Pth-Nad Adduct
pdb|2NTV|B Chain B, Mycobacterium Leprae Inha Bound With Pth-Nad Adduct
Length = 268
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 12 SSLAVDAILRIGTAGAIWGLCAGPQLAR---------KRGLSGITRASFVAKSIGKYGFQ 62
+SLA +L + + G+I G+ P A K L + R FVA+ GKYG +
Sbjct: 127 ASLAKALLLIMNSGGSIVGMDFDPTRAMPAYNWMTVAKSALESVNR--FVAREAGKYGVR 184
Query: 63 CGLVA 67
LVA
Sbjct: 185 SNLVA 189
>pdb|3OEY|A Chain A, Crystal Structure Of Inha_t266e:nadh Complex
Length = 269
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 KRGLSGITRASFVAKSIGKYGFQCGLVA 67
K L + R FVA+ GKYG + LVA
Sbjct: 165 KSALESVNR--FVAREAGKYGVRSNLVA 190
>pdb|3OF2|A Chain A, Crystal Structure Of Inha_t266d:nadh Complex
Length = 269
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 KRGLSGITRASFVAKSIGKYGFQCGLVA 67
K L + R FVA+ GKYG + LVA
Sbjct: 165 KSALESVNR--FVAREAGKYGVRSNLVA 190
>pdb|1BVR|A Chain A, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|B Chain B, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|C Chain C, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|D Chain D, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|E Chain E, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|F Chain F, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|2IDZ|A Chain A, Crystal Structure Of Wild Type Enoyl-Acp(Coa) Reductase
From Mycobacterium Tuberculosis In Complex With Nadh-Inh
Length = 268
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 KRGLSGITRASFVAKSIGKYGFQCGLVA 67
K L + R FVA+ GKYG + LVA
Sbjct: 164 KSALESVNR--FVAREAGKYGVRSNLVA 189
>pdb|2AQI|A Chain A, Crystal Structure Of Isoniazid-Resistant I47t
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh
Length = 269
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 KRGLSGITRASFVAKSIGKYGFQCGLVA 67
K L + R FVA+ GKYG + LVA
Sbjct: 165 KSALESVNR--FVAREAGKYGVRSNLVA 190
>pdb|2NV6|A Chain A, Mycobacterium Tuberculosis Inha (S94a) Bound With Inh-Nad
Adduct
pdb|1ENZ|A Chain A, Crystal Structure And Function Of The Isoniazid Target Of
Mycobacterium Tuberculosis
Length = 268
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 KRGLSGITRASFVAKSIGKYGFQCGLVA 67
K L + R FVA+ GKYG + LVA
Sbjct: 164 KSALESVNR--FVAREAGKYGVRSNLVA 189
>pdb|2IEB|A Chain A, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh- Inh
pdb|2IED|A Chain A, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis Uncomplexed
pdb|2IED|B Chain B, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis Uncomplexed
pdb|2IED|C Chain C, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis Uncomplexed
pdb|2IED|D Chain D, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis Uncomplexed
Length = 268
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 KRGLSGITRASFVAKSIGKYGFQCGLVA 67
K L + R FVA+ GKYG + LVA
Sbjct: 164 KSALESVNR--FVAREAGKYGVRSNLVA 189
>pdb|2AQK|A Chain A, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh
pdb|4DTI|A Chain A, Mycobacterium Tuberculosis Inha-S94a Mutant In Complex
With Nadh
Length = 269
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 KRGLSGITRASFVAKSIGKYGFQCGLVA 67
K L + R FVA+ GKYG + LVA
Sbjct: 165 KSALESVNR--FVAREAGKYGVRSNLVA 190
>pdb|2AQH|A Chain A, Crystal Structure Of Isoniazid-Resistant I21v
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh
Length = 269
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 KRGLSGITRASFVAKSIGKYGFQCGLVA 67
K L + R FVA+ GKYG + LVA
Sbjct: 165 KSALESVNR--FVAREAGKYGVRSNLVA 190
>pdb|2H9I|A Chain A, Mycobacterium Tuberculosis Inha Bound With Eth-Nad Adduct
pdb|2NTJ|A Chain A, Mycobacterium Tuberculosis Inha Bound With Pth-Nad Adduct
pdb|2NTJ|B Chain B, Mycobacterium Tuberculosis Inha Bound With Pth-Nad Adduct
pdb|1ENY|A Chain A, Crystal Structure And Function Of The Isoniazid Target Of
Mycobacterium Tuberculosis
pdb|1ZID|A Chain A, Long Fatty Acid Chain Enoyl-Acp Reductase (Inha) In
Complex With An Isonicotinic-Acyl-Nadh Inhibitor
Length = 268
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 KRGLSGITRASFVAKSIGKYGFQCGLVA 67
K L + R FVA+ GKYG + LVA
Sbjct: 164 KSALESVNR--FVAREAGKYGVRSNLVA 189
>pdb|1P44|A Chain A, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|B Chain B, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|C Chain C, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|D Chain D, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|E Chain E, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|F Chain F, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P45|A Chain A, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P45|B Chain B, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|2B35|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B36|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B37|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2AQ8|A Chain A, Crystal Structure Of Wild-type Of Enoyl-acp(coa) Reductase
From Mycobacterium Tuberculosis In Complex With Nadh.
pdb|2H7I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
1-Cyclohexyl-5-Oxo-N-Phenylpyrrolidine-3-Carboxamide
pdb|2H7L|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
N-(3-Bromophenyl)-1-Cyclohexyl-5-Oxopyrrolidine-3-
Carboxamide
pdb|2H7M|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
1-Cyclohexyl-N-(3,5-Dichlorophenyl)-5-Oxopyrrolidine-
3-Carboxamide
pdb|2H7N|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
N-(5-Chloro-2-Methylphenyl)-1-Cyclohexyl-5-
Oxopyrrolidine-3-Carboxamide
pdb|2H7P|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
N-(3-Chloro-2-Methylphenyl)-1-Cyclohexyl- 5-
Oxopyrrolidine-3-Carboxamide
pdb|2NSD|A Chain A, Enoyl Acyl Carrier Protein Reductase Inha In Complex With
N- (4-Methylbenzoyl)-4-Benzylpiperidine
pdb|2NSD|B Chain B, Enoyl Acyl Carrier Protein Reductase Inha In Complex With
N- (4-Methylbenzoyl)-4-Benzylpiperidine
pdb|2PR2|A Chain A, Structure Of Mycobacterium Tuberculosis Enoyl-Acp
Reductase With Bound Inh-Nadp.
pdb|3FNE|A Chain A, Crystal Structure Of Inha Bound To Triclosan Derivative 17
pdb|3FNE|B Chain B, Crystal Structure Of Inha Bound To Triclosan Derivative 17
pdb|3FNE|C Chain C, Crystal Structure Of Inha Bound To Triclosan Derivative 17
pdb|3FNE|D Chain D, Crystal Structure Of Inha Bound To Triclosan Derivative 17
pdb|3FNF|A Chain A, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNF|B Chain B, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNF|C Chain C, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNF|D Chain D, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNG|A Chain A, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNH|A Chain A, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|2X22|A Chain A, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X22|B Chain B, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X23|A Chain A, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X23|B Chain B, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X23|E Chain E, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X23|G Chain G, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|3OEW|A Chain A, Crystal Structure Of Wild-Type Inha:nadh Complex
pdb|4DRE|A Chain A, Mycobacterium Tuberculosis Inha In Complex With Nadh
Length = 269
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 KRGLSGITRASFVAKSIGKYGFQCGLVA 67
K L + R FVA+ GKYG + LVA
Sbjct: 165 KSALESVNR--FVAREAGKYGVRSNLVA 190
>pdb|2IE0|A Chain A, Crystal Structure Of Isoniazid-Resistant I21v
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh- Inh
Length = 268
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 KRGLSGITRASFVAKSIGKYGFQCGLVA 67
K L + R FVA+ GKYG + LVA
Sbjct: 164 KSALESVNR--FVAREAGKYGVRSNLVA 189
>pdb|4DQU|A Chain A, Mycobacterium Tuberculosis Inha-D148g Mutant In Complex
With Nadh
Length = 269
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 40 KRGLSGITRASFVAKSIGKYGFQCGLVA 67
K L + R FVA+ GKYG + LVA
Sbjct: 165 KSALESVNR--FVAREAGKYGVRSNLVA 190
>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 8 AVPCSSLA---VDAILRIGTAGAIWGLCAGPQLARKRGLSG 45
+ P S+ VD + I G IWG+ A + +K G G
Sbjct: 92 STPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGG 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,299,258
Number of Sequences: 62578
Number of extensions: 66079
Number of successful extensions: 173
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 14
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)