Query 034656
Match_columns 88
No_of_seqs 118 out of 137
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:07:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 99.9 6.7E-24 1.4E-28 153.1 4.2 86 3-88 34-125 (168)
2 PF02466 Tim17: Tim17/Tim22/Ti 99.7 7.4E-17 1.6E-21 108.3 6.6 79 10-88 1-86 (128)
3 TIGR00983 3a0801s02tim23 mitoc 99.5 9.4E-15 2E-19 103.8 5.9 77 11-88 34-114 (149)
4 TIGR00980 3a0801so1tim17 mitoc 99.5 9.2E-15 2E-19 106.1 4.8 80 8-88 6-89 (170)
5 PTZ00236 mitochondrial import 99.4 5.2E-13 1.1E-17 96.6 4.9 76 8-88 8-91 (164)
6 COG5596 TIM22 Mitochondrial im 98.9 1.4E-10 3E-15 85.7 -0.6 86 3-88 34-148 (191)
7 KOG3324 Mitochondrial import i 98.4 1.7E-07 3.6E-12 70.1 3.0 69 19-88 85-157 (206)
8 KOG1652 Mitochondrial import i 98.0 3.6E-07 7.9E-12 67.4 -2.8 80 9-88 7-89 (183)
9 PF10247 Romo1: Reactive mitoc 97.6 0.00015 3.3E-09 46.0 4.6 67 9-75 1-67 (67)
10 KOG4096 Uncharacterized conser 97.0 0.0013 2.9E-08 42.5 4.5 70 7-76 3-72 (75)
11 PF12732 YtxH: YtxH-like prote 86.7 0.91 2E-05 28.1 3.0 37 18-58 4-40 (74)
12 KOG4608 Uncharacterized conser 85.4 0.94 2E-05 35.4 3.1 36 53-88 124-163 (270)
13 PF03672 UPF0154: Uncharacteri 55.8 20 0.00044 22.5 3.3 36 24-59 8-47 (64)
14 COG4980 GvpP Gas vesicle prote 50.0 34 0.00074 23.6 4.0 43 18-64 10-59 (115)
15 PRK01844 hypothetical protein; 45.2 40 0.00086 21.7 3.4 18 42-59 37-54 (72)
16 KOG3225 Mitochondrial import i 41.7 27 0.00059 25.7 2.6 56 18-73 45-106 (168)
17 smart00337 BCL BCL (B-Cell lym 38.0 50 0.0011 21.3 3.2 33 42-74 27-60 (100)
18 COG1023 Gnd Predicted 6-phosph 36.0 13 0.00029 29.5 0.2 78 2-79 88-184 (300)
19 PRK00523 hypothetical protein; 35.7 63 0.0014 20.7 3.3 18 42-59 38-55 (72)
20 PF00452 Bcl-2: Apoptosis regu 34.2 76 0.0016 19.8 3.6 36 44-79 30-66 (101)
21 KOG4096 Uncharacterized conser 32.2 70 0.0015 20.7 3.1 66 13-78 5-70 (75)
22 PF15119 APOC4: Apolipoprotein 31.7 26 0.00056 23.7 1.0 40 4-43 28-67 (99)
23 PF06916 DUF1279: Protein of u 30.8 39 0.00084 21.6 1.8 32 47-78 1-38 (91)
24 PF14689 SPOB_a: Sensor_kinase 28.3 9.9 0.00021 22.8 -1.3 16 73-88 9-25 (62)
25 PRK09430 djlA Dna-J like membr 26.3 65 0.0014 24.5 2.6 25 15-39 10-34 (267)
26 COG5596 TIM22 Mitochondrial im 25.8 25 0.00054 26.4 0.2 30 59-88 81-111 (191)
27 COG4752 Uncharacterized protei 25.6 30 0.00064 25.7 0.6 29 59-87 140-168 (190)
28 KOG0759 Mitochondrial oxogluta 24.7 62 0.0013 25.7 2.2 63 16-78 4-74 (286)
29 PF11947 DUF3464: Protein of u 24.1 65 0.0014 23.2 2.1 27 17-43 104-130 (153)
30 PRK15380 pathogenicity island 23.4 33 0.00072 27.4 0.5 17 2-18 240-256 (319)
31 cd06845 Bcl-2_like Apoptosis r 22.9 90 0.002 21.0 2.5 32 42-73 65-97 (144)
32 COG3090 DctM TRAP-type C4-dica 21.8 82 0.0018 22.4 2.2 78 1-86 76-161 (177)
33 COG3965 Predicted Co/Zn/Cd cat 20.4 1.3E+02 0.0027 24.3 3.1 32 11-42 21-52 (314)
34 PRK15379 pathogenicity island 20.3 43 0.00094 26.8 0.6 17 2-18 240-256 (317)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.7e-24 Score=153.12 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=76.9
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHhhhcccc---cc--cCCchhhHH-HHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 034656 3 EELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLA---RK--RGLSGITRA-SFVAKSIGKYGFQCGLVAGVFSSTRCG 76 (88)
Q Consensus 3 ~~~d~g~pc~nr~vd~fv~~g~~Ga~~gl~~~s~~~---~~--~~~~~~~~~-~~~~k~mg~~~~~~g~vggvysg~ec~ 76 (88)
-+++.+|+|+.|+|.|.|.++++|.++|+|.++++. .+ ...+.+||+ ++|.++|+.++++|++||++|||+||.
T Consensus 34 r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~ 113 (168)
T KOG3225|consen 34 RYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECL 113 (168)
T ss_pred HHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHH
Confidence 357889999999999999999999999999999993 33 356777776 777888888899999999999999999
Q ss_pred hhhhhhhccCCC
Q 034656 77 IQRYRKQNDWMG 88 (88)
Q Consensus 77 ie~~Rgk~Dw~N 88 (88)
||++|+||||+|
T Consensus 114 iE~~RAK~D~~N 125 (168)
T KOG3225|consen 114 IESFRAKSDWYN 125 (168)
T ss_pred HHHHHhhhchhc
Confidence 999999999999
No 2
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.68 E-value=7.4e-17 Score=108.31 Aligned_cols=79 Identities=25% Similarity=0.410 Sum_probs=72.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhcccccc---cCCchhhHHHHHHHHHhh----hhhhhhhhhhhhhhhhhhhhhhhh
Q 034656 10 PCSSLAVDAILRIGTAGAIWGLCAGPQLARK---RGLSGITRASFVAKSIGK----YGFQCGLVAGVFSSTRCGIQRYRK 82 (88)
Q Consensus 10 pc~nr~vd~fv~~g~~Ga~~gl~~~s~~~~~---~~~~~~~~~~~~~k~mg~----~~~~~g~vggvysg~ec~ie~~Rg 82 (88)
||+.|+++++++++.+|+++|.+.++++... +..+.++++..+++.+++ .+.+||.++++|+++||.+|++|+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999996532 455678899999999999 888999999999999999999999
Q ss_pred hccCCC
Q 034656 83 QNDWMG 88 (88)
Q Consensus 83 k~Dw~N 88 (88)
|+|++|
T Consensus 81 k~D~~N 86 (128)
T PF02466_consen 81 KDDPWN 86 (128)
T ss_pred ccccch
Confidence 999998
No 3
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.54 E-value=9.4e-15 Score=103.78 Aligned_cols=77 Identities=18% Similarity=0.100 Sum_probs=68.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcccccccCCchhhHHHHHHHHHhhhhh----hhhhhhhhhhhhhhhhhhhhhhccC
Q 034656 11 CSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGF----QCGLVAGVFSSTRCGIQRYRKQNDW 86 (88)
Q Consensus 11 c~nr~vd~fv~~g~~Ga~~gl~~~s~~~~~~~~~~~~~~~~~~k~mg~~~~----~~g~vggvysg~ec~ie~~Rgk~Dw 86 (88)
+...+.-+++.+.+.|+++|++++..+. +...+.++++..+++.+++++. +||++|++|+++||+||++|+||||
T Consensus 34 ~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~-~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k~D~ 112 (149)
T TIGR00983 34 LCFGTGTCYLTGLAIGALNGLRLGLKET-QSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGKHDD 112 (149)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 4456888999999999999999999963 3345678899999999999886 7779999999999999999999999
Q ss_pred CC
Q 034656 87 MG 88 (88)
Q Consensus 87 ~N 88 (88)
+|
T Consensus 113 ~N 114 (149)
T TIGR00983 113 FN 114 (149)
T ss_pred hH
Confidence 98
No 4
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.53 E-value=9.2e-15 Score=106.08 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=61.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHhhhcccccccCCchhhHHHHHHHHHhhh----hhhhhhhhhhhhhhhhhhhhhhhh
Q 034656 8 AVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKY----GFQCGLVAGVFSSTRCGIQRYRKQ 83 (88)
Q Consensus 8 g~pc~nr~vd~fv~~g~~Ga~~gl~~~s~~~~~~~~~~~~~~~~~~k~mg~~----~~~~g~vggvysg~ec~ie~~Rgk 83 (88)
-+||+.|++|.+.-+..+|++.|.+...+........+ +++...++.+..+ +.+||++|++|+++||++|.+|+|
T Consensus 6 r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g-~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R~K 84 (170)
T TIGR00980 6 REPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKG-EKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRKK 84 (170)
T ss_pred cCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCcc-chhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 58999999999987777777777666666544332112 3555666666554 569999999999999999999999
Q ss_pred ccCCC
Q 034656 84 NDWMG 88 (88)
Q Consensus 84 ~Dw~N 88 (88)
+||+|
T Consensus 85 eD~~N 89 (170)
T TIGR00980 85 EDPWN 89 (170)
T ss_pred cchHH
Confidence 99998
No 5
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.38 E-value=5.2e-13 Score=96.56 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=56.1
Q ss_pred cCCchhHHHHH----HHHHHHHHHHHHHhhhcccccccCCchhhHHHHHHHHHh----hhhhhhhhhhhhhhhhhhhhhh
Q 034656 8 AVPCSSLAVDA----ILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIG----KYGFQCGLVAGVFSSTRCGIQR 79 (88)
Q Consensus 8 g~pc~nr~vd~----fv~~g~~Ga~~gl~~~s~~~~~~~~~~~~~~~~~~k~mg----~~~~~~g~vggvysg~ec~ie~ 79 (88)
-.||+-|++|. |..+.+.|++|+++.+... .+++. ++...++.++ ..+.+||++|++|+++||++|+
T Consensus 8 r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rn-sp~g~----rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~ 82 (164)
T PTZ00236 8 REPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRN-SPKGE----RFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQY 82 (164)
T ss_pred cCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHh-CCCcc----hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999985 5555555556665555543 34444 3444555554 4666999999999999999999
Q ss_pred hhhhccCCC
Q 034656 80 YRKQNDWMG 88 (88)
Q Consensus 80 ~Rgk~Dw~N 88 (88)
+|+|+||+|
T Consensus 83 ~R~K~D~~N 91 (164)
T PTZ00236 83 LRGKEDHWN 91 (164)
T ss_pred HHccCchHH
Confidence 999999998
No 6
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.4e-10 Score=85.70 Aligned_cols=86 Identities=14% Similarity=0.041 Sum_probs=75.3
Q ss_pred hhhhhcC----CchhHHHHHHHHHHHHHHHHHHhhhccccccc---------------------CCchhhHHHHHHHHHh
Q 034656 3 EELIDAV----PCSSLAVDAILRIGTAGAIWGLCAGPQLARKR---------------------GLSGITRASFVAKSIG 57 (88)
Q Consensus 3 ~~~d~g~----pc~nr~vd~fv~~g~~Ga~~gl~~~s~~~~~~---------------------~~~~~~~~~~~~k~mg 57 (88)
-+.|++. -|+-.++-+.|++...|...+.|++++.+-+. ..+.+.|+++.+++|+
T Consensus 34 ~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~ 113 (191)
T COG5596 34 KLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAG 113 (191)
T ss_pred HHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhhcccccc
Confidence 4567777 68999999999999999999999999885221 2466889999999999
Q ss_pred hhhh----hhhhhhhhhhhhhhhhhhhhhhccCCC
Q 034656 58 KYGF----QCGLVAGVFSSTRCGIQRYRKQNDWMG 88 (88)
Q Consensus 58 ~~~~----~~g~vggvysg~ec~ie~~Rgk~Dw~N 88 (88)
++|. ++|+.|.+|.+.||.||.+|+||||.|
T Consensus 114 ~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~ 148 (191)
T COG5596 114 KRGFFTGKNLGVLGLIYAGINSIITALRAKHDIAN 148 (191)
T ss_pred ccccccccccceeeeecccchhhhhhhhhccccch
Confidence 9776 999999999999999999999999987
No 7
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=1.7e-07 Score=70.09 Aligned_cols=69 Identities=28% Similarity=0.345 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhhhcccccccCCchhhHHHHHHHHHhhhhhhhh----hhhhhhhhhhhhhhhhhhhccCCC
Q 034656 19 ILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCG----LVAGVFSSTRCGIQRYRKQNDWMG 88 (88)
Q Consensus 19 fv~~g~~Ga~~gl~~~s~~~~~~~~~~~~~~~~~~k~mg~~~~~~g----~vggvysg~ec~ie~~Rgk~Dw~N 88 (88)
.+-+.++|+++|+..+=.. ..+..+++.++-.++...++.+..|| .++-+|+++|.+|+..|+||||.|
T Consensus 85 yl~G~~iGa~~G~~~Glk~-~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~ln 157 (206)
T KOG3324|consen 85 YLTGSAIGAFNGLILGLKN-TENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLN 157 (206)
T ss_pred hccchhhhhHHHHHHhhhc-CCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccccchh
Confidence 3456778888888877553 34478899999999999999999776 999999999999999999999877
No 8
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=3.6e-07 Score=67.36 Aligned_cols=80 Identities=23% Similarity=0.210 Sum_probs=58.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhcccc---cccCCchhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Q 034656 9 VPCSSLAVDAILRIGTAGAIWGLCAGPQLA---RKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQND 85 (88)
Q Consensus 9 ~pc~nr~vd~fv~~g~~Ga~~gl~~~s~~~---~~~~~~~~~~~~~~~k~mg~~~~~~g~vggvysg~ec~ie~~Rgk~D 85 (88)
.||.-|.||-.--...+|++-|-....+.- -+.+.--+..++.+..+....+.+|++.||+||-++|++..||.|.|
T Consensus 7 ~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~~R~KeD 86 (183)
T KOG1652|consen 7 EPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVAIRKKED 86 (183)
T ss_pred CCCCceeeccccchhhhcccccceeeeeeeeecCCcccccccchhhhhccCcccccceeeeechhhHHHHHHHHHhcccc
Confidence 588888888766666666655544433322 22333233455666777788899999999999999999999999999
Q ss_pred CCC
Q 034656 86 WMG 88 (88)
Q Consensus 86 w~N 88 (88)
-||
T Consensus 87 pwN 89 (183)
T KOG1652|consen 87 PWN 89 (183)
T ss_pred hHH
Confidence 988
No 9
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=97.58 E-value=0.00015 Score=45.95 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=57.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhcccccccCCchhhHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 034656 9 VPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRC 75 (88)
Q Consensus 9 ~pc~nr~vd~fv~~g~~Ga~~gl~~~s~~~~~~~~~~~~~~~~~~k~mg~~~~~~g~vggvysg~ec 75 (88)
|.|+.|.-.++.+++++|.+.|+..++|.....+...+..++.+-|.|=..+..||..=++=|.++|
T Consensus 1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IRc 67 (67)
T PF10247_consen 1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVIRC 67 (67)
T ss_pred CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhccccC
Confidence 6799999999999999999999999999999988888888888888888888888876555555554
No 10
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.0013 Score=42.49 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=64.6
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHhhhcccccccCCchhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 034656 7 DAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCG 76 (88)
Q Consensus 7 ~g~pc~nr~vd~fv~~g~~Ga~~gl~~~s~~~~~~~~~~~~~~~~~~k~mg~~~~~~g~vggvysg~ec~ 76 (88)
..|.|.-+.-.++++++.+|.+-|+..+.|..+..+..++.-++.+-|.|-.++-.||+.=++=++++|.
T Consensus 3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 3588999999999999999999999999999999999899988888888888999999998998999987
No 11
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=86.71 E-value=0.91 Score=28.06 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCchhhHHHHHHHHHhh
Q 034656 18 AILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGK 58 (88)
Q Consensus 18 ~fv~~g~~Ga~~gl~~~s~~~~~~~~~~~~~~~~~~k~mg~ 58 (88)
+|+-|+++|++-|++..|- +|.-.|+++.+..+++..
T Consensus 4 g~l~Ga~~Ga~~glL~aP~----sG~e~R~~l~~~~~~~~~ 40 (74)
T PF12732_consen 4 GFLAGAAAGAAAGLLFAPK----SGKETREKLKDKAEDLKD 40 (74)
T ss_pred HHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHHHHHHHH
Confidence 5666666666666666654 455555666555555444
No 12
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.37 E-value=0.94 Score=35.39 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=26.6
Q ss_pred HHHHhhhhhhhh----hhhhhhhhhhhhhhhhhhhccCCC
Q 034656 53 AKSIGKYGFQCG----LVAGVFSSTRCGIQRYRKQNDWMG 88 (88)
Q Consensus 53 ~k~mg~~~~~~g----~vggvysg~ec~ie~~Rgk~Dw~N 88 (88)
.+..-|.|+.|| ++-+-|-++.-.+-.||+|+|.+|
T Consensus 124 ir~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~ 163 (270)
T KOG4608|consen 124 IRGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSH 163 (270)
T ss_pred HHHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhh
Confidence 344666777776 666666677778889999999865
No 13
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=55.84 E-value=20 Score=22.46 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhcccccc----cCCchhhHHHHHHHHHhhh
Q 034656 24 TAGAIWGLCAGPQLARK----RGLSGITRASFVAKSIGKY 59 (88)
Q Consensus 24 ~~Ga~~gl~~~s~~~~~----~~~~~~~~~~~~~k~mg~~ 59 (88)
.+|++-|.|.+-+...+ .+..+-++++.+...||+.
T Consensus 8 i~G~~~Gff~ar~~~~k~l~~NPpine~mir~M~~QMG~k 47 (64)
T PF03672_consen 8 IVGAVIGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRK 47 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCC
Confidence 34455555554443322 2456778999999999974
No 14
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=50.02 E-value=34 Score=23.62 Aligned_cols=43 Identities=23% Similarity=0.115 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCchh-------hHHHHHHHHHhhhhhhhh
Q 034656 18 AILRIGTAGAIWGLCAGPQLARKRGLSGI-------TRASFVAKSIGKYGFQCG 64 (88)
Q Consensus 18 ~fv~~g~~Ga~~gl~~~s~~~~~~~~~~~-------~~~~~~~k~mg~~~~~~g 64 (88)
+.+-||.+|++-+|..++= .+...| +++..+++.++.....++
T Consensus 10 G~liGgiiGa~aaLL~AP~----sGkelR~~~K~~~~~~~~~ae~~~~~~~~~a 59 (115)
T COG4980 10 GILIGGIIGAAAALLFAPK----SGKELRKKLKKSGDALFELAEDKGTDILMIA 59 (115)
T ss_pred HHHHHHHHHHHHHHHhCCc----ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444555555555555443 232222 355555566555555443
No 15
>PRK01844 hypothetical protein; Provisional
Probab=45.22 E-value=40 Score=21.66 Aligned_cols=18 Identities=6% Similarity=-0.016 Sum_probs=14.2
Q ss_pred CCchhhHHHHHHHHHhhh
Q 034656 42 GLSGITRASFVAKSIGKY 59 (88)
Q Consensus 42 ~~~~~~~~~~~~k~mg~~ 59 (88)
+..+-++++.+...||++
T Consensus 37 Ppine~mir~Mm~QMGqk 54 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQK 54 (72)
T ss_pred CCCCHHHHHHHHHHhCCC
Confidence 556778888888888874
No 16
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.67 E-value=27 Score=25.74 Aligned_cols=56 Identities=18% Similarity=0.117 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCCc------hhhHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 034656 18 AILRIGTAGAIWGLCAGPQLARKRGLS------GITRASFVAKSIGKYGFQCGLVAGVFSST 73 (88)
Q Consensus 18 ~fv~~g~~Ga~~gl~~~s~~~~~~~~~------~~~~~~~~~k~mg~~~~~~g~vggvysg~ 73 (88)
--++.|+.|...|..++.+-.....+. ..+..+.++|+|++++.+.|.-=++--++
T Consensus 45 Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlv 106 (168)
T KOG3225|consen 45 KAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLV 106 (168)
T ss_pred HHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhh
Confidence 346789999999999999987766332 24467778899999999888654444333
No 17
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=37.97 E-value=50 Score=21.32 Aligned_cols=33 Identities=21% Similarity=0.100 Sum_probs=27.0
Q ss_pred CCchhhHHHHHHHHHhhhh-hhhhhhhhhhhhhh
Q 034656 42 GLSGITRASFVAKSIGKYG-FQCGLVAGVFSSTR 74 (88)
Q Consensus 42 ~~~~~~~~~~~~k~mg~~~-~~~g~vggvysg~e 74 (88)
+.+..+.+..+++++-+.| .+||-|-++|+..=
T Consensus 27 ~~~~~~~f~~Va~~lf~dg~inWGRIval~~F~~ 60 (100)
T smart00337 27 PGTAIELFGEVATELFSDGNINWGRVVALLSFGG 60 (100)
T ss_pred cccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 4567788899999999999 89998888877643
No 18
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=36.04 E-value=13 Score=29.48 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=50.9
Q ss_pred hhhhhhcCCchhHHHHH----------HHHHHHHHHHHHHhhhcccccccCCchhhHHHHHHHHHhh--hhh-hhh----
Q 034656 2 EEELIDAVPCSSLAVDA----------ILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGK--YGF-QCG---- 64 (88)
Q Consensus 2 ~~~~d~g~pc~nr~vd~----------fv~~g~~Ga~~gl~~~s~~~~~~~~~~~~~~~~~~k~mg~--~~~-~~g---- 64 (88)
|++||-||.----+..- ||-.|+-|.+||+=.+.-..+--+...-+.++-+||.+.- .|. ++|
T Consensus 88 DivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA~ge~Gyl~~Gp~Gs 167 (300)
T COG1023 88 DIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGS 167 (300)
T ss_pred CEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhCcCcCccccccCCCc
Confidence 56777777765544443 6678899999998776554444455667788888888766 233 333
Q ss_pred --hhhhhhhhhhhhhhh
Q 034656 65 --LVAGVFSSTRCGIQR 79 (88)
Q Consensus 65 --~vggvysg~ec~ie~ 79 (88)
.+=-|.-|+||++=.
T Consensus 168 GHfvKMVHNGIEYGmM~ 184 (300)
T COG1023 168 GHFVKMVHNGIEYGMMQ 184 (300)
T ss_pred chhHHHHhccHHHHHHH
Confidence 233567777887643
No 19
>PRK00523 hypothetical protein; Provisional
Probab=35.66 E-value=63 Score=20.72 Aligned_cols=18 Identities=6% Similarity=-0.110 Sum_probs=14.5
Q ss_pred CCchhhHHHHHHHHHhhh
Q 034656 42 GLSGITRASFVAKSIGKY 59 (88)
Q Consensus 42 ~~~~~~~~~~~~k~mg~~ 59 (88)
+..+-++++.+..+||++
T Consensus 38 Ppine~mir~M~~QMGqK 55 (72)
T PRK00523 38 PPITENMIRAMYMQMGRK 55 (72)
T ss_pred cCCCHHHHHHHHHHhCCC
Confidence 566778889999999874
No 20
>PF00452 Bcl-2: Apoptosis regulator proteins, Bcl-2 family; InterPro: IPR000712 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 2WH6_A 1K3K_A 1AF3_A 3PK1_B 2K7W_A 1F16_A 3PL7_C 2VM6_A 3I1H_A 3MQP_A ....
Probab=34.25 E-value=76 Score=19.84 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=28.5
Q ss_pred chhhHHHHHHHHHhhh-hhhhhhhhhhhhhhhhhhhh
Q 034656 44 SGITRASFVAKSIGKY-GFQCGLVAGVFSSTRCGIQR 79 (88)
Q Consensus 44 ~~~~~~~~~~k~mg~~-~~~~g~vggvysg~ec~ie~ 79 (88)
...+.+..+++++-.. +.+||-|-++|+..-..+.+
T Consensus 30 ~~~~~f~~v~~~lf~d~~inWGRIval~~f~~~l~~~ 66 (101)
T PF00452_consen 30 NAYETFNEVAEELFEDGGINWGRIVALFAFAGALAVE 66 (101)
T ss_dssp THHHHHHHHHHHHTTTSSTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 4677889999999998 89999999888876554443
No 21
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.24 E-value=70 Score=20.72 Aligned_cols=66 Identities=23% Similarity=0.188 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccccCCchhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhh
Q 034656 13 SLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQ 78 (88)
Q Consensus 13 nr~vd~fv~~g~~Ga~~gl~~~s~~~~~~~~~~~~~~~~~~k~mg~~~~~~g~vggvysg~ec~ie 78 (88)
+..+|-+=++..+|.+.|.+.++..-.-....-.+.=++.++.+||.-++=|-.=|+|-++-.+|.
T Consensus 5 pSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir 70 (75)
T KOG4096|consen 5 PSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIR 70 (75)
T ss_pred ccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChhHHHHHHhHHHHhccchhhhhhhhhhhee
Confidence 345677778888888888888888777777777777888888888888887777777777666554
No 22
>PF15119 APOC4: Apolipoprotein C4
Probab=31.66 E-value=26 Score=23.68 Aligned_cols=40 Identities=10% Similarity=-0.101 Sum_probs=32.7
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHHhhhcccccccCC
Q 034656 4 ELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGL 43 (88)
Q Consensus 4 ~~d~g~pc~nr~vd~fv~~g~~Ga~~gl~~~s~~~~~~~~ 43 (88)
+.++-.|+++||-|.-=-..+-++++|..+-=|++..+.+
T Consensus 28 vkelveplvtrtrerwqwfw~p~~~qGFmQTYYdDHLkDL 67 (99)
T PF15119_consen 28 VKELVEPLVTRTRERWQWFWGPSAFQGFMQTYYDDHLKDL 67 (99)
T ss_pred HHHHHHHHHHhhHHHHhhccChHHHHHHHHHHHHHHHhhc
Confidence 4577789999999999999999999998777777655543
No 23
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=30.76 E-value=39 Score=21.62 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhhhhh------hhhhhhhhhhhhhhhhh
Q 034656 47 TRASFVAKSIGKYGF------QCGLVAGVFSSTRCGIQ 78 (88)
Q Consensus 47 ~~~~~~~k~mg~~~~------~~g~vggvysg~ec~ie 78 (88)
|++++++|+=|.-++ .+.-.|+.|..++.+++
T Consensus 1 qr~K~l~k~YG~~~l~vy~~~s~~~~~~~y~~v~~GvD 38 (91)
T PF06916_consen 1 QRLKQLFKKYGYVALGVYLGLSFISLGSCYLAVSSGVD 38 (91)
T ss_pred CcHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 567888888777554 55677777777777665
No 24
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.34 E-value=9.9 Score=22.84 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=10.3
Q ss_pred hhhhhhhhhh-hccCCC
Q 034656 73 TRCGIQRYRK-QNDWMG 88 (88)
Q Consensus 73 ~ec~ie~~Rg-k~Dw~N 88 (88)
++-.++.+|. +|||.|
T Consensus 9 ~~~~~~~lR~~RHD~~N 25 (62)
T PF14689_consen 9 LEELIDSLRAQRHDFLN 25 (62)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 4555666766 677765
No 25
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=26.34 E-value=65 Score=24.54 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccc
Q 034656 15 AVDAILRIGTAGAIWGLCAGPQLAR 39 (88)
Q Consensus 15 ~vd~fv~~g~~Ga~~gl~~~s~~~~ 39 (88)
.+-+|+-+|..||+.|++.+...+.
T Consensus 10 ~~~G~~~~g~~Ga~~G~~~Gh~~d~ 34 (267)
T PRK09430 10 FAFGFLFGGFFGALLGLLIGHMFDK 34 (267)
T ss_pred HHHHHHHhhHHHHHHHHHHHhHHhh
Confidence 4668888999999999999988764
No 26
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=25.80 E-value=25 Score=26.40 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=25.4
Q ss_pred hhhhhh-hhhhhhhhhhhhhhhhhhhccCCC
Q 034656 59 YGFQCG-LVAGVFSSTRCGIQRYRKQNDWMG 88 (88)
Q Consensus 59 ~~~~~g-~vggvysg~ec~ie~~Rgk~Dw~N 88 (88)
.+++|| +=|++++-+.|..++.|-+-|.+|
T Consensus 81 ~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n 111 (191)
T COG5596 81 LGLNFGGVWGGLFSTIDCTPFRLQLKEQLNN 111 (191)
T ss_pred cCccccccccceeeccccchHHHHHhhcccc
Confidence 455777 667899999999999999999887
No 27
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.58 E-value=30 Score=25.71 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=25.7
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhccCC
Q 034656 59 YGFQCGLVAGVFSSTRCGIQRYRKQNDWM 87 (88)
Q Consensus 59 ~~~~~g~vggvysg~ec~ie~~Rgk~Dw~ 87 (88)
.|..||+---+..-..|.+|-+|+.+||.
T Consensus 140 fGTGwGlpde~m~~sDYiLEPIra~sd~N 168 (190)
T COG4752 140 FGTGWGLPDELMNTSDYILEPIRAASDWN 168 (190)
T ss_pred ecCCCCCCHHHHHHhhHhhhhhhccCCcc
Confidence 45589988888899999999999999996
No 28
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion]
Probab=24.67 E-value=62 Score=25.71 Aligned_cols=63 Identities=21% Similarity=0.130 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccc-----CCchhhHHHHHHHHHhhhh---hhhhhhhhhhhhhhhhhh
Q 034656 16 VDAILRIGTAGAIWGLCAGPQLARKR-----GLSGITRASFVAKSIGKYG---FQCGLVAGVFSSTRCGIQ 78 (88)
Q Consensus 16 vd~fv~~g~~Ga~~gl~~~s~~~~~~-----~~~~~~~~~~~~k~mg~~~---~~~g~vggvysg~ec~ie 78 (88)
+.-|+-||.+|.+-+.+.-+.|-++- +..++.++..+.+-+.++| ++-|+-+++...+.|+.-
T Consensus 4 ~~~~~~GGla~~~A~~~thPlDLvKvrmQ~~~~~~k~si~~~~~i~k~eG~la~Y~GlSA~lLRQ~tYTt~ 74 (286)
T KOG0759|consen 4 LMPWYFGGLAGMGATCVTHPLDLVKVRMQLQGEHGKLSIAQLTKILKNEGILAFYNGLSAALLRQATYTTT 74 (286)
T ss_pred CcceeeccHHHHHHHHHcCcHHHHHHHHHHccccccchHHHHHHHHHhcChHHHhhhhHHHHHHHHHHHHH
Confidence 44577789999999999999987653 3333666666666665555 488888887776666543
No 29
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=24.13 E-value=65 Score=23.18 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccCC
Q 034656 17 DAILRIGTAGAIWGLCAGPQLARKRGL 43 (88)
Q Consensus 17 d~fv~~g~~Ga~~gl~~~s~~~~~~~~ 43 (88)
-.|.-.|++|...|++.+|||...+|+
T Consensus 104 ~~~Fg~gllGisYGilSaSWD~~r~GS 130 (153)
T PF11947_consen 104 LVFFGLGLLGISYGILSASWDPEREGS 130 (153)
T ss_pred HHHHHHHHHhhhhhhcccccCCCCCCC
Confidence 356678999999999999999887764
No 30
>PRK15380 pathogenicity island 1 protein SopD2; Provisional
Probab=23.40 E-value=33 Score=27.35 Aligned_cols=17 Identities=24% Similarity=0.067 Sum_probs=14.2
Q ss_pred hhhhhhcCCchhHHHHH
Q 034656 2 EEELIDAVPCSSLAVDA 18 (88)
Q Consensus 2 ~~~~d~g~pc~nr~vd~ 18 (88)
|+++|+.|||++....+
T Consensus 240 ev~f~m~hp~i~yll~~ 256 (319)
T PRK15380 240 EVLFDMVHPTLSYLLQA 256 (319)
T ss_pred hHHHHHhhHHHHHHHhc
Confidence 58999999999876654
No 31
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=22.91 E-value=90 Score=21.05 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=25.6
Q ss_pred CCchhhHHHHHHHHHhhh-hhhhhhhhhhhhhh
Q 034656 42 GLSGITRASFVAKSIGKY-GFQCGLVAGVFSST 73 (88)
Q Consensus 42 ~~~~~~~~~~~~k~mg~~-~~~~g~vggvysg~ 73 (88)
+....+.+..+++++=+. +.+||-|-++|+..
T Consensus 65 ~~~~~~~f~~v~~~lf~dg~inWGRIval~~f~ 97 (144)
T cd06845 65 PDNAYEVFQEVARELFEDGGINWGRIVALFAFG 97 (144)
T ss_pred cchHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 556677888888888888 78999888886654
No 32
>COG3090 DctM TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]
Probab=21.85 E-value=82 Score=22.45 Aligned_cols=78 Identities=14% Similarity=-0.045 Sum_probs=54.7
Q ss_pred ChhhhhhcCCchhHHHHHHHHHHHHHHHHHHhhhccccccc------CCchhhHHHHHHHHHhh--hhhhhhhhhhhhhh
Q 034656 1 MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKR------GLSGITRASFVAKSIGK--YGFQCGLVAGVFSS 72 (88)
Q Consensus 1 m~~~~d~g~pc~nr~vd~fv~~g~~Ga~~gl~~~s~~~~~~------~~~~~~~~~~~~k~mg~--~~~~~g~vggvysg 72 (88)
+|.+.+.-+|-.-|....+.-.-.+..+..++.++|+.... +..+.+ ++- -..-.|.+...+..
T Consensus 76 vd~l~~~lp~~~r~~l~~~~~~l~l~f~~~l~~~~~~~~~~~~~~~~~al~ip--------~~~~y~alpi~~~l~~l~~ 147 (177)
T COG3090 76 VDVLVNLLPPRARKILRIIADLLILVFFLLLIWGGWKLAAINWSQGSPALGIP--------MGWVYLALPIGGVLMALRF 147 (177)
T ss_pred ehHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCcc--------HHHHHHHHHHHHHHHHHHH
Confidence 57788888898889999999988888888888888875332 111222 111 12245566677778
Q ss_pred hhhhhhhhhhhccC
Q 034656 73 TRCGIQRYRKQNDW 86 (88)
Q Consensus 73 ~ec~ie~~Rgk~Dw 86 (88)
++-.++.+|++++-
T Consensus 148 l~~l~~~~~~~~~~ 161 (177)
T COG3090 148 LERLIRLLRGKKVV 161 (177)
T ss_pred HHHHHHHHhcCCcc
Confidence 88888888888753
No 33
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=20.40 E-value=1.3e+02 Score=24.26 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 034656 11 CSSLAVDAILRIGTAGAIWGLCAGPQLARKRG 42 (88)
Q Consensus 11 c~nr~vd~fv~~g~~Ga~~gl~~~s~~~~~~~ 42 (88)
.+.+++-.-+-.++.|.+||++.+|+..+-.|
T Consensus 21 ~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDG 52 (314)
T COG3965 21 YLRISIAGTVIFAAFGIIWGLLSGSMSIIFDG 52 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceEEEecc
Confidence 35566777788889999999999999876665
No 34
>PRK15379 pathogenicity island 1 effector protein SopD; Provisional
Probab=20.32 E-value=43 Score=26.81 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.0
Q ss_pred hhhhhhcCCchhHHHHH
Q 034656 2 EEELIDAVPCSSLAVDA 18 (88)
Q Consensus 2 ~~~~d~g~pc~nr~vd~ 18 (88)
|+++|+.|||+.....+
T Consensus 240 ev~f~m~hp~~~yll~~ 256 (317)
T PRK15379 240 EVAFSMMHPCISYLLHT 256 (317)
T ss_pred hHHHHHhhhHHHHHHhc
Confidence 58999999999876554
Done!