Query 034656
Match_columns 88
No_of_seqs 118 out of 137
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 08:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i3t_B Spindle assembly checkp 46.4 5.2 0.00018 23.6 0.4 17 72-88 24-46 (54)
2 2g9p_A Antimicrobial peptide l 30.8 14 0.00047 18.5 0.4 12 73-84 15-26 (26)
3 4aq3_A Apoptosis regulator BCL 27.2 45 0.0015 22.9 2.8 32 42-73 85-116 (169)
4 2w3l_A BCL2-XL, apoptosis regu 24.6 74 0.0025 20.7 3.4 31 42-72 61-91 (144)
5 3sp7_A BCL-2-like protein 1; a 23.8 54 0.0018 22.5 2.6 31 42-72 79-109 (172)
6 2y6w_A BCL-2-like protein 2; a 19.6 85 0.0029 21.4 3.0 32 42-73 85-116 (177)
7 2fyu_K Ubiquinol-cytochrome C 19.2 82 0.0028 18.2 2.4 24 47-70 8-31 (56)
8 2ims_A Apoptosis regulator BAK 19.0 81 0.0028 21.2 2.7 30 44-73 91-120 (171)
9 1o0l_A Apoptosis regulator BCL 16.1 1.2E+02 0.0042 20.7 3.2 32 42-73 77-108 (188)
10 2xa0_A BCL-2, apoptosis regula 15.9 1.4E+02 0.0048 21.2 3.4 31 43-73 124-154 (207)
No 1
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=46.37 E-value=5.2 Score=23.60 Aligned_cols=17 Identities=0% Similarity=-0.126 Sum_probs=10.2
Q ss_pred hhhhhhhhhhhh------ccCCC
Q 034656 72 STRCGIQRYRKQ------NDWMG 88 (88)
Q Consensus 72 g~ec~ie~~Rgk------~Dw~N 88 (88)
+.|.++|++|+. +||.|
T Consensus 24 ~~E~sfeEllA~sRg~~~~~w~~ 46 (54)
T 2i3t_B 24 RLEFSLEEVLAISRNVYKRVRTN 46 (54)
T ss_dssp -CBCCHHHHHHHTTTCSSCC---
T ss_pred cceeeHHHHHHHhcCcccccccc
Confidence 568888888876 56665
No 2
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=30.79 E-value=14 Score=18.50 Aligned_cols=12 Identities=8% Similarity=0.296 Sum_probs=8.5
Q ss_pred hhhhhhhhhhhc
Q 034656 73 TRCGIQRYRKQN 84 (88)
Q Consensus 73 ~ec~ie~~Rgk~ 84 (88)
+.|.+.+.||||
T Consensus 15 isyavkkargkh 26 (26)
T 2g9p_A 15 ISYAVKKARGKH 26 (26)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHHccCC
Confidence 346677888886
No 3
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=27.16 E-value=45 Score=22.86 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=26.3
Q ss_pred CCchhhHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 034656 42 GLSGITRASFVAKSIGKYGFQCGLVAGVFSST 73 (88)
Q Consensus 42 ~~~~~~~~~~~~k~mg~~~~~~g~vggvysg~ 73 (88)
+.+..+.+..+++++=+.|.+||-|-++|+..
T Consensus 85 ~~~a~~~F~~Va~elF~dGiNWGRIVaLfaF~ 116 (169)
T 4aq3_A 85 PFTARGRFATVVEELFRDGVNWGRIVAFFEFG 116 (169)
T ss_dssp TTTHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34677889999999999999999888887643
No 4
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=24.56 E-value=74 Score=20.72 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=24.6
Q ss_pred CCchhhHHHHHHHHHhhhhhhhhhhhhhhhh
Q 034656 42 GLSGITRASFVAKSIGKYGFQCGLVAGVFSS 72 (88)
Q Consensus 42 ~~~~~~~~~~~~k~mg~~~~~~g~vggvysg 72 (88)
+.+..+.+..+++++=..|.+||-|-++|+.
T Consensus 61 ~~~~~~~f~~Va~elF~dGinWGRIValf~F 91 (144)
T 2w3l_A 61 PFTARGRFATVVEELFRDGVNWGRIVAFFEF 91 (144)
T ss_dssp TTTHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3456778888888888889999988777754
No 5
>3sp7_A BCL-2-like protein 1; apoptosis regulator-inhibitor complex; HET: 03B; 1.40A {Homo sapiens} PDB: 2lp8_A* 2lpc_A 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 4ehr_A* 3spf_A* 2pon_B 3r85_A 2p1l_A 4a1u_A* 2yj1_A 2yq7_A 2yq6_A 3fdm_A ...
Probab=23.80 E-value=54 Score=22.52 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=25.4
Q ss_pred CCchhhHHHHHHHHHhhhhhhhhhhhhhhhh
Q 034656 42 GLSGITRASFVAKSIGKYGFQCGLVAGVFSS 72 (88)
Q Consensus 42 ~~~~~~~~~~~~k~mg~~~~~~g~vggvysg 72 (88)
+.+..+.+..+++++=+.|.+||-|-++|+.
T Consensus 79 ~~~a~~~F~~Va~elF~dGinWGRIVaLfaF 109 (172)
T 3sp7_A 79 PGTAYQSFEQVVNELFRDGVNWGRIVAFFSF 109 (172)
T ss_dssp TTCCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3466788899999999999999988877753
No 6
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=19.57 E-value=85 Score=21.42 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=24.9
Q ss_pred CCchhhHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 034656 42 GLSGITRASFVAKSIGKYGFQCGLVAGVFSST 73 (88)
Q Consensus 42 ~~~~~~~~~~~~k~mg~~~~~~g~vggvysg~ 73 (88)
+.+..+.+..+++++=+.|.+||-|-++|+..
T Consensus 85 ~~~~~~~f~~Va~elF~dGinWGRIVaLfaF~ 116 (177)
T 2y6w_A 85 PGSAQQRFTQVSDELFQGGPNWGRLVAFFVFG 116 (177)
T ss_dssp GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34567778888888888899999888887644
No 7
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=19.24 E-value=82 Score=18.23 Aligned_cols=24 Identities=21% Similarity=0.045 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhh
Q 034656 47 TRASFVAKSIGKYGFQCGLVAGVF 70 (88)
Q Consensus 47 ~~~~~~~k~mg~~~~~~g~vggvy 70 (88)
++..+++++.+.....||.+|++-
T Consensus 8 ~~~~~~~~~w~psa~~~Gaaa~v~ 31 (56)
T 2fyu_K 8 PRYRQLARNWVPTASLWGAVGAVG 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhhhhhhhhhhhhh
Confidence 355667888888888999877763
No 8
>2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB: 2imt_A 2jcn_A 2yv6_A 3qbr_B* 2xpx_B 2jby_B 2voh_B*
Probab=18.98 E-value=81 Score=21.24 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=24.5
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 034656 44 SGITRASFVAKSIGKYGFQCGLVAGVFSST 73 (88)
Q Consensus 44 ~~~~~~~~~~k~mg~~~~~~g~vggvysg~ 73 (88)
+..+.+..+++++-+.|.+||-|-++|+..
T Consensus 91 ~~~~~f~~Va~elF~dGinWGRIVal~~F~ 120 (171)
T 2ims_A 91 NAYEYFTKIATSLFESGINWGRVVALLGFG 120 (171)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 567788888888888999999888887653
No 9
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=16.13 E-value=1.2e+02 Score=20.69 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=25.6
Q ss_pred CCchhhHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 034656 42 GLSGITRASFVAKSIGKYGFQCGLVAGVFSST 73 (88)
Q Consensus 42 ~~~~~~~~~~~~k~mg~~~~~~g~vggvysg~ 73 (88)
+.+..+.+..+++++=+.|.+||-|-++|+..
T Consensus 77 ~~~~~~~F~~Va~elF~dGinWGRIValfaF~ 108 (188)
T 1o0l_A 77 PGSAQQRFTQVSDELFQGGPNWGRLVAFFVFG 108 (188)
T ss_dssp SSTTHHHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 44567788889999988999999888887543
No 10
>2xa0_A BCL-2, apoptosis regulator BCL-2; cell death; 2.70A {Homo sapiens} PDB: 1gjh_A 1ysw_A* 2o21_A* 2o22_A* 1g5m_A
Probab=15.87 E-value=1.4e+02 Score=21.20 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=24.2
Q ss_pred CchhhHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 034656 43 LSGITRASFVAKSIGKYGFQCGLVAGVFSST 73 (88)
Q Consensus 43 ~~~~~~~~~~~k~mg~~~~~~g~vggvysg~ 73 (88)
.+..+.+..+++++=+.|.+||-|-++|+..
T Consensus 124 ~~a~~~F~~Va~elF~DGiNWGRIVaLfaF~ 154 (207)
T 2xa0_A 124 FTARGRFATVVEELFRDGVNWGRIVAFFEFG 154 (207)
T ss_dssp TTHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3567788888888888899999887777643
Done!