BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034660
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LZH8|OP164_ARATH Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis
          thaliana GN=OEP164 PE=2 SV=1
          Length = 136

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 78/87 (89%)

Query: 1  MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
          MEEEL+ AVPCSSL V+++LR+ TAG ++GLCAGP+ ARK GLSG+++ASFVAKSIG++G
Sbjct: 1  MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFG 60

Query: 61 FQCGLVAGVFSSTRCGIQRYRKQNDWM 87
          FQCGLV+GVF+ T CG+QRYR +NDW+
Sbjct: 61 FQCGLVSGVFTMTHCGLQRYRGKNDWV 87


>sp|Q9ZV24|OP161_ARATH Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis
           thaliana GN=OEP161 PE=1 SV=1
          Length = 148

 Score = 39.3 bits (90), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 32/77 (41%)

Query: 10  PCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGV 69
           P  +L VDA L+IG  G    L      A  +G    +      K + K G   G   GV
Sbjct: 24  PFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSKSTLEHALKKLCKEGVYWGAAGGV 83

Query: 70  FSSTRCGIQRYRKQNDW 86
           +  T  GI+R R   DW
Sbjct: 84  YIGTEYGIERIRGSRDW 100


>sp|Q41050|OEP16_PEA Outer envelope pore protein 16, chloroplastic OS=Pisum sativum
           GN=OEP16 PE=1 SV=1
          Length = 146

 Score = 32.3 bits (72), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 31/77 (40%)

Query: 10  PCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGV 69
           P  +L VD  L+IG   A   +        ++G           K + K G   G +AGV
Sbjct: 24  PFLNLTVDGFLKIGAVAATRSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGV 83

Query: 70  FSSTRCGIQRYRKQNDW 86
           +     G++R R   DW
Sbjct: 84  YVGMEYGVERIRGTRDW 100


>sp|Q2W2I2|RPOC_MAGSA DNA-directed RNA polymerase subunit beta' OS=Magnetospirillum
            magneticum (strain AMB-1 / ATCC 700264) GN=rpoC PE=3 SV=1
          Length = 1496

 Score = 30.8 bits (68), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 2    EEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLAR-KRGLSGITRASFVAKSIGKYG 60
            E ELIDA    ++ + ++L   +   + G C G  LAR  R   G       A+SIG+ G
Sbjct: 962  EVELIDAAGIETVVIRSVLTCDSEEGVCGSCYGRDLARGTRVNVGEAVGVIAAQSIGEPG 1021

Query: 61   FQ 62
             Q
Sbjct: 1022 TQ 1023


>sp|Q6BZY4|TIM22_YARLI Mitochondrial import inner membrane translocase subunit TIM22
           OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
           GN=TIM22 PE=3 SV=2
          Length = 185

 Score = 29.3 bits (64), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 64  GLVAGVFSSTRCGIQRYRKQND-WMG 88
           G + GVFS T C I+  R +ND W G
Sbjct: 108 GFIGGVFSGTECCIESLRAKNDIWNG 133


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,548,834
Number of Sequences: 539616
Number of extensions: 883302
Number of successful extensions: 2678
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2675
Number of HSP's gapped (non-prelim): 8
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)