AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>034663
MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPL
LSIPDGLGNASITGYFPYQNLTVKERCY

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT2G32580 AT2G32580 AT2G32580	protein from Arabidopsis thaliana	2.0e-17
BLAST match view associations BLAST with AT4G04360 AT4G04360 AT4G04360	protein from Arabidopsis thaliana	2.5e-17
BLAST match view associations BLAST with AT1G05070 AT1G05070 AT1G05070	protein from Arabidopsis thaliana	2.0e-15
BLAST match view associations BLAST with NKS1 NKS1 NKS1 AT4G30996	protein from Arabidopsis thaliana	1.4e-07
BLAST match view associations BLAST with AT2G24290 AT2G24290 AT2G24290	protein from Arabidopsis thaliana	1.8e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034663
        (88 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2060268 - symbol:AT2G32580 "AT2G32580" species...   213  2.0e-17   1
TAIR|locus:2134837 - symbol:AT4G04360 "AT4G04360" species...   212  2.5e-17   1
TAIR|locus:2205543 - symbol:AT1G05070 "AT1G05070" species...   194  2.0e-15   1
TAIR|locus:505006538 - symbol:NKS1 "AT4G30996" species:37...   120  1.4e-07   1
TAIR|locus:2061027 - symbol:AT2G24290 "AT2G24290" species...   119  1.8e-07   1


>TAIR|locus:2060268 [details] [associations]
            symbol:AT2G32580 "AT2G32580" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005794 "Golgi apparatus" evidence=IDA]
            GO:GO:0005794 EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC004681
            InterPro:IPR010471 Pfam:PF06364 EMBL:AY090949 EMBL:AY122927
            EMBL:AK227659 IPI:IPI00543119 PIR:T02557 RefSeq:NP_565746.1
            UniGene:At.38051 IntAct:O80895 PaxDb:O80895 PRIDE:O80895
            EnsemblPlants:AT2G32580.1 GeneID:817818 KEGG:ath:AT2G32580
            TAIR:At2g32580 eggNOG:NOG292562 HOGENOM:HOG000240455
            InParanoid:O80895 OMA:CDARPLL PhylomeDB:O80895
            ProtClustDB:CLSN2715029 ArrayExpress:O80895 Genevestigator:O80895
            Uniprot:O80895
        Length = 183

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/73 (61%), Positives = 52/73 (71%)

Query:     1 MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPL 60
             MA + AA+ KVGL+LL L + GYI+GPPLYWH  E L AVS   A +C  CVCDCSS PL
Sbjct:     1 MAKHTAAL-KVGLALLALSMIGYILGPPLYWHLTEAL-AVS---ATSCSACVCDCSSLPL 55

Query:    61 LSIPDGLGNASIT 73
             L+IP GL N S T
Sbjct:    56 LTIPTGLSNGSFT 68


>TAIR|locus:2134837 [details] [associations]
            symbol:AT4G04360 "AT4G04360" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002687 UniGene:At.74904
            IPI:IPI00516989 RefSeq:NP_192345.4 UniGene:At.27749 PRIDE:F4JGC5
            EnsemblPlants:AT4G04360.1 GeneID:825756 KEGG:ath:AT4G04360
            OMA:WEFRARE InterPro:IPR010471 Pfam:PF06364 Uniprot:F4JGC5
        Length = 176

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 42/71 (59%), Positives = 46/71 (64%)

Query:     1 MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPL 60
             M   Q   AKV   ++GLC+  YI GP LYWH  E +    HSS   CPPCVCDCSSQPL
Sbjct:     1 MTRRQKKTAKVVTVVMGLCIVAYIAGPSLYWHLNETIADSLHSS---CPPCVCDCSSQPL 57

Query:    61 LSIPDGLGNAS 71
             LSIPDGL N S
Sbjct:    58 LSIPDGLSNHS 68


>TAIR|locus:2205543 [details] [associations]
            symbol:AT1G05070 "AT1G05070" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0009616 "virus induced gene silencing"
            evidence=RCA] [GO:0010050 "vegetative phase change" evidence=RCA]
            [GO:0005768 "endosome" evidence=IDA] [GO:0005802 "trans-Golgi
            network" evidence=IDA] EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005794 GO:GO:0005768 GO:GO:0005802 InterPro:IPR010471
            Pfam:PF06364 HOGENOM:HOG000240455 ProtClustDB:CLSN2715029
            EMBL:AY048292 EMBL:AY085193 EMBL:AY139793 IPI:IPI00540092
            RefSeq:NP_563728.1 UniGene:At.17090 UniGene:At.74960 IntAct:Q94AB8
            PaxDb:Q94AB8 PRIDE:Q94AB8 EnsemblPlants:AT1G05070.1 GeneID:839330
            KEGG:ath:AT1G05070 TAIR:At1g05070 eggNOG:NOG331979
            InParanoid:Q94AB8 OMA:ADMGLLE PhylomeDB:Q94AB8
            Genevestigator:Q94AB8 Uniprot:Q94AB8
        Length = 184

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 40/71 (56%), Positives = 50/71 (70%)

Query:     1 MAVNQAAIAKVGLSLLGLCLFGYIVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQPL 60
             MA + AA+ K+GL+LLGL + GYI+GPPLYWH  E L AVS SS   CP C C+CS+   
Sbjct:     1 MARHTAAL-KIGLALLGLSMAGYILGPPLYWHLTEALAAVSASS---CPSCPCECSTYSA 56

Query:    61 LSIPDGLGNAS 71
             ++IP  L NAS
Sbjct:    57 VTIPKELSNAS 67


>TAIR|locus:505006538 [details] [associations]
            symbol:NKS1 "AT4G30996" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] [GO:0042538 "hyperosmotic
            salinity response" evidence=IMP] [GO:0043182 "vacuolar sequestering
            of sodium ion" evidence=IMP] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0005768 "endosome" evidence=IDA] [GO:0005802
            "trans-Golgi network" evidence=IDA] GO:GO:0005783 GO:GO:0005794
            EMBL:CP002687 GO:GO:0005768 GO:GO:0005802 GO:GO:0042538
            InterPro:IPR010471 Pfam:PF06364 HOGENOM:HOG000240455 EMBL:AY045923
            EMBL:AY114012 IPI:IPI00539410 RefSeq:NP_567864.1 UniGene:At.2151
            PRIDE:Q94AM8 EnsemblPlants:AT4G30996.1 GeneID:829226
            KEGG:ath:AT4G30996 TAIR:At4g30996 InParanoid:Q94AM8 OMA:MNATLVE
            PhylomeDB:Q94AM8 ProtClustDB:CLSN2688381 ArrayExpress:Q94AM8
            Genevestigator:Q94AM8 GO:GO:0043182 Uniprot:Q94AM8
        Length = 172

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 24/51 (47%), Positives = 30/51 (58%)

Query:    24 IVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQ-PLLSIPDGLGNASIT 73
             + GP LYW F +G    + +++  CPPCVCDC     LL I  GL N SIT
Sbjct:    23 VCGPALYWKFNKGFVGSTRANSL-CPPCVCDCPPPLSLLQIAPGLANLSIT 72


>TAIR|locus:2061027 [details] [associations]
            symbol:AT2G24290 "AT2G24290" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000394 "RNA splicing, via
            endonucleolytic cleavage and ligation" evidence=RCA] [GO:0009086
            "methionine biosynthetic process" evidence=RCA] EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC006403 InterPro:IPR010471
            Pfam:PF06364 HOGENOM:HOG000240455 ProtClustDB:CLSN2688381
            EMBL:AF370163 EMBL:AY150492 IPI:IPI00541120 PIR:H84634
            RefSeq:NP_565567.1 UniGene:At.13799 IntAct:Q9ZQ38 STRING:Q9ZQ38
            EnsemblPlants:AT2G24290.1 GeneID:816965 KEGG:ath:AT2G24290
            TAIR:At2g24290 eggNOG:NOG293944 InParanoid:Q9ZQ38 PhylomeDB:Q9ZQ38
            ArrayExpress:Q9ZQ38 Genevestigator:Q9ZQ38 Uniprot:Q9ZQ38
        Length = 173

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 24/52 (46%), Positives = 29/52 (55%)

Query:    24 IVGPPLYWHFMEGLDAVSHSSAATCPPCVCDCSSQ-PLLSIPDGLGNASITG 74
             + GP LYW   +G    + S+ + CPPCVCD      LL I  GL N SITG
Sbjct:    23 VCGPALYWKLNKGFVGSARSTNSICPPCVCDFPPPLSLLQIAPGLANLSITG 74


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.463    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        88   0.00091  102 3  11 22  0.44    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  118 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.87u 0.09s 9.96t   Elapsed:  00:00:00
  Total cpu time:  9.87u 0.09s 9.96t   Elapsed:  00:00:00
  Start:  Mon May 20 17:41:21 2013   End:  Mon May 20 17:41:21 2013

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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data