BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034663
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WIY|A Chain A, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
           P450 From Thermus Thermophilus Hb8
 pdb|1WIY|B Chain B, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
           P450 From Thermus Thermophilus Hb8
          Length = 389

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 11  VGLSLLGLCLFGYIVGPPLYWHFMEGLDAV 40
           + L LLG  LFG  + P L  H ++ LD +
Sbjct: 135 LSLRLLGRALFGKPLSPSLAEHALKALDRI 164


>pdb|1N97|A Chain A, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
           Strain Hb27
 pdb|1N97|B Chain B, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
           Strain Hb27
          Length = 389

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 11  VGLSLLGLCLFGYIVGPPLYWHFMEGLDAV 40
           + L LLG  LFG  + P L  H ++ LD +
Sbjct: 135 LSLRLLGRALFGKPLSPSLAEHALKALDRI 164


>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
          Length = 525

 Score = 25.0 bits (53), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 35  EGLDAVSHSSAATCPPCVCDCSSQPLLSIPDGLGNASITGYFPYQNLTVKERC 87
           EG   +S      C  C C+    PL +IP G    S TGY   + L   +RC
Sbjct: 425 EGFYDLSAEDPYGCKSCACN----PLGTIPGGNPCDSETGYCYCKRLVTGQRC 473


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.463 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,587,914
Number of Sequences: 62578
Number of extensions: 81519
Number of successful extensions: 172
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 4
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)