Query 034663
Match_columns 88
No_of_seqs 41 out of 43
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:10:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z80_A TOLL-like receptor 2, v 66.8 2.2 7.4E-05 30.3 1.4 23 46-68 28-51 (353)
2 3zyj_A Leucine-rich repeat-con 63.4 4.5 0.00015 29.8 2.6 24 45-68 32-63 (440)
3 2r9u_A Variable lymphocyte rec 46.7 11 0.00039 24.5 2.2 22 45-66 3-30 (174)
4 2v9t_B SLIT homolog 2 protein 45.6 12 0.0004 25.2 2.1 22 46-67 3-30 (220)
5 4g8a_A TOLL-like receptor 4; l 39.6 12 0.00042 27.6 1.6 21 47-67 23-50 (635)
6 2xot_A Amphoterin-induced prot 38.0 21 0.00072 25.6 2.6 25 44-68 8-38 (361)
7 2qn6_B Translation initiation 32.3 14 0.0005 23.7 0.9 12 20-31 44-55 (93)
8 4ay9_X Follicle-stimulating ho 30.9 14 0.00049 26.3 0.7 20 48-67 2-28 (350)
9 2wfh_A SLIT homolog 2 protein 29.6 25 0.00086 23.1 1.7 21 47-67 3-29 (193)
10 2id5_A Lingo-1, leucine rich r 24.0 38 0.0013 24.7 2.0 21 47-67 2-30 (477)
11 2v70_A SLIT-2, SLIT homolog 2 23.3 46 0.0016 22.2 2.2 22 46-67 3-30 (220)
12 2z66_A Variable lymphocyte rec 22.2 41 0.0014 23.0 1.7 14 54-67 13-26 (306)
13 2l9u_A Receptor tyrosine-prote 21.1 15 0.00052 21.1 -0.5 23 13-35 11-34 (40)
14 2z81_A CD282 antigen, TOLL-lik 21.0 37 0.0013 25.0 1.4 21 47-67 3-24 (549)
No 1
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=66.78 E-value=2.2 Score=30.31 Aligned_cols=23 Identities=43% Similarity=0.723 Sum_probs=17.6
Q ss_pred CCCCC-cccCCCCCCCccccccCC
Q 034663 46 ATCPP-CVCDCSSQPLLSIPDGLG 68 (88)
Q Consensus 46 ~sCpp-C~CDCss~~Ll~ip~gL~ 68 (88)
..||. |.|||+...+-.||+++.
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~~ 51 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGLT 51 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTCC
T ss_pred CCCCCCeEeeCCCCCccccccccc
Confidence 45775 789999888888887543
No 2
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=63.36 E-value=4.5 Score=29.76 Aligned_cols=24 Identities=46% Similarity=1.176 Sum_probs=15.0
Q ss_pred CCCCCC-cccC-------CCCCCCccccccCC
Q 034663 45 AATCPP-CVCD-------CSSQPLLSIPDGLG 68 (88)
Q Consensus 45 s~sCpp-C~CD-------Css~~Ll~ip~gL~ 68 (88)
...||. |.|+ |+...|-.||+++.
T Consensus 32 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~ 63 (440)
T 3zyj_A 32 AQTCPSVCSCSNQFSKVICVRKNLREVPDGIS 63 (440)
T ss_dssp -CCCCSSSEECTTSCEEECCSCCCSSCCSCCC
T ss_pred cccCCCCCEeCCCCCEEEeCCCCcCcCCCCCC
Confidence 346875 6663 66667778887543
No 3
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=46.70 E-value=11 Score=24.54 Aligned_cols=22 Identities=45% Similarity=1.179 Sum_probs=13.8
Q ss_pred CCCCCC-ccc-----CCCCCCCcccccc
Q 034663 45 AATCPP-CVC-----DCSSQPLLSIPDG 66 (88)
Q Consensus 45 s~sCpp-C~C-----DCss~~Ll~ip~g 66 (88)
+..||. |.| ||+...|-.||++
T Consensus 3 ~~~CP~~C~C~~~~l~~~~n~l~~iP~~ 30 (174)
T 2r9u_A 3 SAGCPSQCSCDQTLVNCQNIRLASVPAG 30 (174)
T ss_dssp CCSSCTTSEECSSEEECCSSCCSSCCSC
T ss_pred CCCCCCCCEECCcEEEeCCCCCCccCCC
Confidence 347984 555 5665566667764
No 4
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=45.65 E-value=12 Score=25.18 Aligned_cols=22 Identities=45% Similarity=1.152 Sum_probs=15.4
Q ss_pred CCCC-Cccc-----CCCCCCCccccccC
Q 034663 46 ATCP-PCVC-----DCSSQPLLSIPDGL 67 (88)
Q Consensus 46 ~sCp-pC~C-----DCss~~Ll~ip~gL 67 (88)
..|| .|.| ||+...+-.||.++
T Consensus 3 ~~CP~~C~C~~~~v~c~~~~l~~iP~~l 30 (220)
T 2v9t_B 3 LHCPAACTCSNNIVDCRGKGLTEIPTNL 30 (220)
T ss_dssp CCSCTTSEEETTEEECTTSCCSSCCSSC
T ss_pred CCCCCCCEECCCEEEcCCCCcCcCCCcc
Confidence 4687 5777 67777777777744
No 5
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=39.64 E-value=12 Score=27.60 Aligned_cols=21 Identities=38% Similarity=0.809 Sum_probs=14.8
Q ss_pred CCCCccc-------CCCCCCCccccccC
Q 034663 47 TCPPCVC-------DCSSQPLLSIPDGL 67 (88)
Q Consensus 47 sCppC~C-------DCss~~Ll~ip~gL 67 (88)
+..||.| ||+...|-+||++|
T Consensus 23 ~~~~c~~~~~~~~~~c~~~~l~~vP~~l 50 (635)
T 4g8a_A 23 SWEPCVEVVPNITYQCMELNFYKIPDNL 50 (635)
T ss_dssp --CCSEEEETTTEEECTTSCCSSCCSSS
T ss_pred CCCCccccCCCCEEECCCCCcCccCCCC
Confidence 3446765 69888999999865
No 6
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=37.99 E-value=21 Score=25.62 Aligned_cols=25 Identities=44% Similarity=1.091 Sum_probs=17.0
Q ss_pred CCCCCCC-ccc-----CCCCCCCccccccCC
Q 034663 44 SAATCPP-CVC-----DCSSQPLLSIPDGLG 68 (88)
Q Consensus 44 ss~sCpp-C~C-----DCss~~Ll~ip~gL~ 68 (88)
+...||. |.| ||+...|-.||.++.
T Consensus 8 ~~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~ 38 (361)
T 2xot_A 8 SVVSCPANCLCASNILSCSKQQLPNVPQSLP 38 (361)
T ss_dssp CCTTCCTTCEEETTEEECCSSCCSSCCSSCC
T ss_pred cCCCCCCCCEECCCEEEeCCCCcCccCccCC
Confidence 3457985 666 677777777887543
No 7
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=32.30 E-value=14 Score=23.74 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=10.0
Q ss_pred hheeeeCCccee
Q 034663 20 LFGYIVGPPLYW 31 (88)
Q Consensus 20 ~a~yIvGPpLYW 31 (88)
+=.|.+|||+|=
T Consensus 44 vkI~~vgaP~Y~ 55 (93)
T 2qn6_B 44 IKIYTIGAPRYR 55 (93)
T ss_dssp EEEEESSTTEEE
T ss_pred EEEEEEcCCeEE
Confidence 567999999993
No 8
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=30.86 E-value=14 Score=26.32 Aligned_cols=20 Identities=35% Similarity=0.911 Sum_probs=13.7
Q ss_pred CCC--ccc-----CCCCCCCccccccC
Q 034663 48 CPP--CVC-----DCSSQPLLSIPDGL 67 (88)
Q Consensus 48 Cpp--C~C-----DCss~~Ll~ip~gL 67 (88)
||+ |.| ||+...|-+||.++
T Consensus 2 Cp~~~C~C~~~~v~C~~~~Lt~iP~~l 28 (350)
T 4ay9_X 2 CHHRICHCSNRVFLCQESKVTEIPSDL 28 (350)
T ss_dssp CCCSSSEEETTEEEEESTTCCSCCTTC
T ss_pred CCCCccEeeCCEEEecCCCCCccCcCc
Confidence 774 666 47666787888754
No 9
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=29.62 E-value=25 Score=23.15 Aligned_cols=21 Identities=43% Similarity=1.217 Sum_probs=13.9
Q ss_pred CCC-Cccc-----CCCCCCCccccccC
Q 034663 47 TCP-PCVC-----DCSSQPLLSIPDGL 67 (88)
Q Consensus 47 sCp-pC~C-----DCss~~Ll~ip~gL 67 (88)
+|| .|.| ||+...+-.||+++
T Consensus 3 ~CP~~C~C~~~~l~~~~~~l~~ip~~~ 29 (193)
T 2wfh_A 3 RCPTECTCLDTVVRCSNKGLKVLPKGI 29 (193)
T ss_dssp -CCTTCEEETTEEECTTSCCSSCCSCC
T ss_pred CCCCCCEeCCCEEEcCCCCCCcCCCCC
Confidence 577 5777 67776777777744
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=23.95 E-value=38 Score=24.73 Aligned_cols=21 Identities=38% Similarity=1.301 Sum_probs=12.5
Q ss_pred CCCC-ccc-------CCCCCCCccccccC
Q 034663 47 TCPP-CVC-------DCSSQPLLSIPDGL 67 (88)
Q Consensus 47 sCpp-C~C-------DCss~~Ll~ip~gL 67 (88)
.||+ |.| ||+...+-.||+++
T Consensus 2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~ 30 (477)
T 2id5_A 2 GCPPRCECSAQDRAVLCHRKRFVAVPEGI 30 (477)
T ss_dssp CCSTTCEEETTTTEEECCSCCCSSCCSCC
T ss_pred cccCCCeECCCCCEEEeCCCCcCcCCCCC
Confidence 4774 444 45555677777744
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=23.33 E-value=46 Score=22.16 Aligned_cols=22 Identities=50% Similarity=1.167 Sum_probs=13.1
Q ss_pred CCCC-Cccc-----CCCCCCCccccccC
Q 034663 46 ATCP-PCVC-----DCSSQPLLSIPDGL 67 (88)
Q Consensus 46 ~sCp-pC~C-----DCss~~Ll~ip~gL 67 (88)
..|| .|.| ||+...+-.||+++
T Consensus 3 ~~CP~~C~C~~~~l~~s~n~l~~iP~~~ 30 (220)
T 2v70_A 3 LACPEKCRCEGTTVDCSNQKLNKIPEHI 30 (220)
T ss_dssp -CCCTTCEEETTEEECCSSCCSSCCSCC
T ss_pred CCCCCCCEECCCEeEeCCCCcccCccCC
Confidence 3587 4555 46666666777644
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=22.23 E-value=41 Score=22.96 Aligned_cols=14 Identities=43% Similarity=0.933 Sum_probs=9.6
Q ss_pred CCCCCCCccccccC
Q 034663 54 DCSSQPLLSIPDGL 67 (88)
Q Consensus 54 DCss~~Ll~ip~gL 67 (88)
||+...+-.+|.++
T Consensus 13 ~c~~~~l~~ip~~~ 26 (306)
T 2z66_A 13 RCNSKGLTSVPTGI 26 (306)
T ss_dssp ECCSSCCSSCCSCC
T ss_pred EcCCCCcccCCCCC
Confidence 77777777777643
No 13
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=21.10 E-value=15 Score=21.11 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=13.8
Q ss_pred HHHHHHHhheeeeCC-cceeeehh
Q 034663 13 LSLLGLCLFGYIVGP-PLYWHFME 35 (88)
Q Consensus 13 Lvllav~~a~yIvGP-pLYW~~~e 35 (88)
.++.|+..+..|+|. -||||-+.
T Consensus 11 t~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 11 TVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCceeEEEcccc
Confidence 345555555555554 58998753
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=21.03 E-value=37 Score=25.04 Aligned_cols=21 Identities=48% Similarity=0.917 Sum_probs=16.0
Q ss_pred CCC-CcccCCCCCCCccccccC
Q 034663 47 TCP-PCVCDCSSQPLLSIPDGL 67 (88)
Q Consensus 47 sCp-pC~CDCss~~Ll~ip~gL 67 (88)
+|| .|+|||+...+-.||+++
T Consensus 3 ~C~~~~~c~~~~~~l~~ip~~~ 24 (549)
T 2z81_A 3 SCDASGVCDGRSRSFTSIPSGL 24 (549)
T ss_dssp EECTTSEEECTTSCCSSCCSCC
T ss_pred cCCCCceEECCCCccccccccC
Confidence 355 367999988888898754
Done!