Query 034663
Match_columns 88
No_of_seqs 41 out of 43
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 08:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034663.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034663hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w8aa_ c.10.2.7 (A:) Slit {Fr 52.1 3.2 0.00023 25.8 1.7 20 48-67 2-27 (192)
2 d1xwdc1 c.10.2.7 (C:18-259) Fo 33.4 7.8 0.00056 24.0 1.3 13 55-67 15-27 (242)
3 d1igyb3 b.1.1.2 (B:236-361) Im 25.6 11 0.00081 22.2 1.0 18 48-65 2-20 (116)
4 d1ozna_ c.10.2.7 (A:) Reticulo 24.5 17 0.0012 23.3 1.8 13 54-66 17-29 (284)
5 d2ho2a1 b.72.1.1 (A:253-285) A 19.5 13 0.00093 19.4 0.3 10 28-37 16-25 (33)
6 d2cnda2 c.25.1.1 (A:125-270) N 18.3 16 0.0012 20.9 0.6 10 21-30 114-123 (146)
7 d2bmwa2 c.25.1.1 (A:142-303) F 18.0 17 0.0012 21.2 0.7 10 21-30 116-125 (162)
8 d1fdra2 c.25.1.1 (A:101-248) F 17.7 15 0.0011 21.5 0.3 9 22-30 109-117 (148)
9 d1qfja2 c.25.1.1 (A:98-232) NA 16.8 18 0.0013 20.9 0.6 11 21-31 99-109 (135)
10 d1a8pa2 c.25.1.1 (A:101-258) F 16.6 16 0.0012 21.4 0.3 10 21-30 115-124 (158)
No 1
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=52.09 E-value=3.2 Score=25.81 Aligned_cols=20 Identities=40% Similarity=1.165 Sum_probs=14.7
Q ss_pred CC-CcccC-----CCCCCCccccccC
Q 034663 48 CP-PCVCD-----CSSQPLLSIPDGL 67 (88)
Q Consensus 48 Cp-pC~CD-----Css~~Ll~ip~gL 67 (88)
|| .|.|. |+...|-+||+++
T Consensus 2 CP~~C~C~~~~v~Cs~~~L~~iP~~l 27 (192)
T d1w8aa_ 2 CPAMCHCEGTTVDCTGRGLKEIPRDI 27 (192)
T ss_dssp CCTTSEEETTEEECTTSCCSSCCSCC
T ss_pred cCCCCEEcCCEEEEeCCCcCccCCCC
Confidence 55 46653 8888899999866
No 2
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.37 E-value=7.8 Score=24.05 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=7.8
Q ss_pred CCCCCCccccccC
Q 034663 55 CSSQPLLSIPDGL 67 (88)
Q Consensus 55 Css~~Ll~ip~gL 67 (88)
|+...+-+||+++
T Consensus 15 c~~~~l~~iP~~l 27 (242)
T d1xwdc1 15 CQESKVTEIPSDL 27 (242)
T ss_dssp EESCSCSSCCSCS
T ss_pred EeCCCCCCcCCCC
Confidence 4344677788754
No 3
>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.58 E-value=11 Score=22.16 Aligned_cols=18 Identities=28% Similarity=0.999 Sum_probs=12.9
Q ss_pred CCCcccCCCCC-CCccccc
Q 034663 48 CPPCVCDCSSQ-PLLSIPD 65 (88)
Q Consensus 48 CppC~CDCss~-~Ll~ip~ 65 (88)
|.||.|..+.. ....+||
T Consensus 2 c~~c~~~~p~~p~V~i~pP 20 (116)
T d1igyb3 2 CKPCICTVPEVSSVFIFPP 20 (116)
T ss_dssp CCCCCCCCSSSCCEEEECC
T ss_pred CcCcCCCCCcCCEEEEECc
Confidence 89999998764 4444554
No 4
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.50 E-value=17 Score=23.27 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=8.8
Q ss_pred CCCCCCCcccccc
Q 034663 54 DCSSQPLLSIPDG 66 (88)
Q Consensus 54 DCss~~Ll~ip~g 66 (88)
+|+...|-+||.+
T Consensus 17 ~c~~~~L~~iP~~ 29 (284)
T d1ozna_ 17 SCPQQGLQAVPVG 29 (284)
T ss_dssp ECCSSCCSSCCTT
T ss_pred EcCCCCCCccCCC
Confidence 5767677777763
No 5
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.46 E-value=13 Score=19.43 Aligned_cols=10 Identities=40% Similarity=1.062 Sum_probs=8.3
Q ss_pred cceeeehhhh
Q 034663 28 PLYWHFMEGL 37 (88)
Q Consensus 28 pLYW~~~e~l 37 (88)
+.|||+..|-
T Consensus 16 ~YYWHiptGt 25 (33)
T d2ho2a1 16 TYYWHIPTGT 25 (33)
T ss_dssp EEEEETTTTE
T ss_pred ceEEEecCCc
Confidence 6899998765
No 6
>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}
Probab=18.31 E-value=16 Score=20.92 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=8.3
Q ss_pred heeeeCCcce
Q 034663 21 FGYIVGPPLY 30 (88)
Q Consensus 21 a~yIvGPpLY 30 (88)
.+||+|||-.
T Consensus 114 ~vyiCGp~~m 123 (146)
T d2cnda2 114 LALACGPPPM 123 (146)
T ss_dssp EEEEECCHHH
T ss_pred EEEEECCHHH
Confidence 4899999965
No 7
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}
Probab=17.96 E-value=17 Score=21.18 Aligned_cols=10 Identities=50% Similarity=0.996 Sum_probs=8.3
Q ss_pred heeeeCCcce
Q 034663 21 FGYIVGPPLY 30 (88)
Q Consensus 21 a~yIvGPpLY 30 (88)
..||+|||-.
T Consensus 116 ~vyvCGp~~m 125 (162)
T d2bmwa2 116 HTYICGPPPM 125 (162)
T ss_dssp EEEEEECTTH
T ss_pred EEEEECCHHH
Confidence 4899999964
No 8
>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}
Probab=17.71 E-value=15 Score=21.54 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=7.9
Q ss_pred eeeeCCcce
Q 034663 22 GYIVGPPLY 30 (88)
Q Consensus 22 ~yIvGPpLY 30 (88)
+||+|||-.
T Consensus 109 vyiCGp~~m 117 (148)
T d1fdra2 109 VMLCGNPQM 117 (148)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 799999875
No 9
>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}
Probab=16.81 E-value=18 Score=20.87 Aligned_cols=11 Identities=27% Similarity=-0.052 Sum_probs=9.0
Q ss_pred heeeeCCccee
Q 034663 21 FGYIVGPPLYW 31 (88)
Q Consensus 21 a~yIvGPpLYW 31 (88)
..||+|||-+=
T Consensus 99 ~~yvCGp~~m~ 109 (135)
T d1qfja2 99 DIYIAGRFEMA 109 (135)
T ss_dssp EEEEESCHHHH
T ss_pred ceEeeCCHHHH
Confidence 48999999773
No 10
>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}
Probab=16.60 E-value=16 Score=21.36 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=8.2
Q ss_pred heeeeCCcce
Q 034663 21 FGYIVGPPLY 30 (88)
Q Consensus 21 a~yIvGPpLY 30 (88)
-.||+|||-.
T Consensus 115 ~~yiCGp~~m 124 (158)
T d1a8pa2 115 RAMICGSPSM 124 (158)
T ss_dssp EEEEEECHHH
T ss_pred eEEEECCHHH
Confidence 4899999955
Done!