BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034665
         (87 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
           Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
          Length = 250

 Score = 32.7 bits (73), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 10  TPIAVIISAAVFALAH--------LTPGEFPQLFV-LGIALGFSYAQTRNLLTPITIHA 59
           TP A+ +   V AL H        +  GE PQ+ V  G+ LGF  A  R LL P+   A
Sbjct: 66  TPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDA 124


>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
 pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
          Length = 517

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 20  VFALAHLTP--GEFPQLFVLGIALGFSYAQTRNLLTPITIHAFWNSGVILL 68
           V  L  L P  GE  Q F LGI  G SYAQ   ++  + IH   +  V+ L
Sbjct: 453 VLGLHFLGPNAGEVTQGFALGIKCGASYAQ---VMQTVGIHPTCSEEVVKL 500


>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
           Reductase, C- Terminal 3-Residue Truncation
          Length = 488

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 20  VFALAHLTP--GEFPQLFVLGIALGFSYAQTRNLLTPITIHAFWNSGVILL 68
           V  L  L P  GE  Q F LGI  G SYAQ   ++  + IH   +  V+ L
Sbjct: 427 VLGLHFLGPNAGEVTQGFALGIKCGASYAQ---VMQTVGIHPTCSEEVVKL 474


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.139    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,409,287
Number of Sequences: 62578
Number of extensions: 76767
Number of successful extensions: 135
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 3
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)