BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034665
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O06159|BKDC_MYCTU Dihydrolipoyllysine-residue acyltransferase component of
branched-chain alpha-ketoacid dehydrogenase complex
OS=Mycobacterium tuberculosis GN=bkdC PE=1 SV=2
Length = 393
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 10 TPIAVIISAAVFALAH--------LTPGEFPQLFV-LGIALGFSYAQTRNLLTPITIHA 59
TP A+ + V AL H + GE PQ+ V G+ LGF A R LL P+ A
Sbjct: 217 TPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDA 275
>sp|Q7A3G4|PTU3C_STAAN PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain N315) GN=glcB PE=1 SV=1
Length = 688
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|Q99R97|PTU3C_STAAM PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=glcB PE=3 SV=1
Length = 688
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|A7X6P1|PTU3C_STAA1 PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain Mu3 / ATCC 700698) GN=glcB PE=3 SV=1
Length = 688
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|Q6GDR0|PTU3C_STAAR PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain MRSA252) GN=glcB PE=3 SV=1
Length = 688
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|Q8NUS2|PTU3C_STAAW PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain MW2) GN=glcB PE=3 SV=1
Length = 688
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|A8Z3D6|PTU3C_STAAT PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain USA300 / TCH1516) GN=glcB PE=3 SV=2
Length = 688
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|Q6G6D6|PTU3C_STAAS PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain MSSA476) GN=glcB PE=3 SV=1
Length = 688
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|A6QK27|PTU3C_STAAE PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain Newman) GN=glcB PE=3 SV=1
Length = 688
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|Q5HD13|PTU3C_STAAC PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain COL) GN=glcB PE=3 SV=1
Length = 688
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|A5IVW5|PTU3C_STAA9 PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain JH9) GN=glcB PE=3 SV=1
Length = 688
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|Q2FV87|PTU3C_STAA8 PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain NCTC 8325) GN=glcB PE=3 SV=1
Length = 688
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|Q2FDW8|PTU3C_STAA3 PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain USA300) GN=glcB PE=3 SV=1
Length = 688
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|A6U4R9|PTU3C_STAA2 PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain JH1) GN=glcB PE=3 SV=1
Length = 688
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEAAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|Q2YWC1|PTU3C_STAAB PTS system glucoside-specific EIICBA component OS=Staphylococcus
aureus (strain bovine RF122 / ET3-1) GN=glcB PE=3 SV=1
Length = 688
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60
+V + W+ I V+IS+ + A + P LF +G ALG + L + +
Sbjct: 41 LVEIAPWLKNDIIVMISSVMEASGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLI 100
Query: 61 WNS--GVILLLTFLQLQGY--DLKELLQASS 87
N+ G +L +T + Y KEL QA+
Sbjct: 101 MNATMGKVLHITIDDIFSYAKGAKELSQAAK 131
>sp|O05525|YDIL_BACSU Putative membrane peptidase YdiL OS=Bacillus subtilis (strain 168)
GN=ydiL PE=3 SV=1
Length = 244
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 13 AVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAFWNSGVILL 68
A +IS+ +F + H +G F YA+T+ + PI H N+ V+++
Sbjct: 164 AGLISSVIFGIVHADLKHLLLYTAMGFTFAFLYARTKRIWVPIFAHLMMNTFVVIM 219
>sp|O29119|PGK_ARCFU Phosphoglycerate kinase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=pgk PE=3 SV=1
Length = 407
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 1 MVSLTKWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIA-LGFSYAQTRNLLTPITIHA 59
+V +P+ + ++ V AL+ GE ++FVLG A + S +N+L
Sbjct: 162 LVGFVPVLPSVVGRLVENEVTALSKPLKGEGRKIFVLGGAKIKDSVKVLKNVLENNIAEK 221
Query: 60 FWNSGVILLLTFLQLQGYDLKEL 82
+GV+ FL L+GYD+ E+
Sbjct: 222 VVLTGVVANY-FLMLKGYDIGEV 243
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,204,785
Number of Sequences: 539616
Number of extensions: 993706
Number of successful extensions: 3701
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3685
Number of HSP's gapped (non-prelim): 20
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)