Query 034665
Match_columns 87
No_of_seqs 243 out of 1022
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:13:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02517 Abi: CAAX protease se 99.5 6.9E-14 1.5E-18 84.7 5.8 62 2-63 28-90 (91)
2 COG1266 Predicted metal-depend 99.4 1.2E-12 2.7E-17 88.8 7.8 62 2-63 147-212 (226)
3 TIGR03008 pepcterm_CAAX CAAX p 99.3 3.8E-11 8.3E-16 84.9 8.7 58 10-70 157-214 (222)
4 KOG4130 Prenyl protein proteas 98.1 4.2E-06 9E-11 60.4 3.8 62 8-69 159-240 (291)
5 PF05437 AzlD: Branched-chain 82.3 7.4 0.00016 23.6 5.7 29 31-59 64-92 (99)
6 COG2311 Predicted membrane pro 76.8 24 0.00051 27.4 7.9 65 16-80 104-173 (394)
7 COG4392 Predicted membrane pro 75.5 7 0.00015 25.0 4.1 56 5-60 38-98 (107)
8 COG4449 Predicted protease of 73.9 13 0.00029 30.1 6.0 43 19-61 752-809 (827)
9 PF13367 PrsW-protease: Protea 69.9 16 0.00034 24.6 5.1 35 33-67 131-174 (191)
10 PF14851 FAM176: FAM176 family 66.5 12 0.00027 25.2 3.9 32 15-46 4-37 (153)
11 PRK10408 putative L-valine exp 62.4 35 0.00076 21.9 5.2 33 30-62 70-102 (111)
12 PF04892 VanZ: VanZ like famil 61.1 37 0.00081 21.1 5.6 55 31-85 58-112 (133)
13 PHA02758 hypothetical protein; 60.2 29 0.00064 25.3 5.1 52 17-68 221-291 (321)
14 PF09512 ThiW: Thiamine-precur 54.8 27 0.00059 23.6 3.9 32 33-64 71-102 (150)
15 KOG2489 Transmembrane protein 52.3 42 0.00091 27.2 5.2 40 31-71 444-483 (592)
16 PF06916 DUF1279: Protein of u 47.7 53 0.0011 19.8 4.2 33 52-84 12-44 (91)
17 TIGR02185 Trep_Strep conserved 46.7 90 0.002 21.3 5.7 57 6-62 55-117 (189)
18 PF09991 DUF2232: Predicted me 46.2 99 0.0022 21.5 8.5 48 31-78 64-113 (290)
19 PLN02434 fatty acid hydroxylas 45.4 74 0.0016 22.9 5.2 38 8-45 138-176 (237)
20 PRK03356 L-carnitine/gamma-but 41.8 40 0.00087 26.8 3.7 37 14-50 130-166 (504)
21 PRK09950 putative transporter; 40.8 38 0.00083 27.0 3.4 35 15-49 129-164 (506)
22 TIGR00842 bcct choline/carniti 40.0 31 0.00068 27.0 2.8 37 14-50 82-118 (453)
23 PRK10835 hypothetical protein; 39.6 1.6E+02 0.0035 22.1 6.7 36 19-54 86-128 (373)
24 TIGR02359 thiW thiW protein. L 37.3 1.3E+02 0.0028 20.3 7.8 35 30-64 71-105 (160)
25 PRK09921 permease DsdX; Provis 33.9 1.2E+02 0.0026 23.7 5.1 47 4-50 23-85 (445)
26 PF10766 DUF2592: Protein of u 32.6 51 0.0011 17.4 2.0 25 16-43 2-26 (41)
27 PF02028 BCCT: BCCT family tra 30.6 58 0.0012 25.7 3.0 33 16-48 121-153 (485)
28 PF06781 UPF0233: Uncharacteri 30.6 73 0.0016 19.5 2.8 41 31-71 37-77 (87)
29 PRK02251 putative septation in 29.5 1.1E+02 0.0023 18.8 3.4 40 31-71 38-77 (87)
30 PF06295 DUF1043: Protein of u 28.3 78 0.0017 20.3 2.9 18 31-48 2-19 (128)
31 PRK09928 choline transport pro 27.5 74 0.0016 26.4 3.2 35 15-49 137-171 (679)
32 PF14017 DUF4233: Protein of u 27.5 1.1E+02 0.0023 19.3 3.3 8 35-42 80-87 (107)
33 PRK10034 fructuronate transpor 27.3 1.8E+02 0.0039 22.8 5.2 46 5-50 22-83 (447)
34 PF05978 UNC-93: Ion channel r 26.0 1.4E+02 0.0031 19.7 3.9 45 2-46 58-108 (156)
35 PRK09821 putative transporter; 26.0 2E+02 0.0044 22.6 5.2 46 4-49 22-83 (454)
36 KOG3455 Predicted membrane pro 25.7 90 0.002 20.8 2.8 70 2-71 45-122 (139)
37 PRK14984 high-affinity glucona 24.4 2.2E+02 0.0047 22.3 5.1 46 4-49 18-79 (438)
38 PF10086 DUF2324: Putative mem 23.6 1.1E+02 0.0024 21.6 3.1 21 50-70 190-210 (223)
39 PRK10132 hypothetical protein; 23.4 1E+02 0.0022 19.5 2.6 27 22-48 80-107 (108)
40 TIGR00827 EIIC-GAT PTS system, 23.4 1.7E+02 0.0036 22.9 4.3 51 31-84 115-165 (407)
41 PRK10404 hypothetical protein; 23.0 1E+02 0.0022 19.1 2.6 26 22-47 74-100 (101)
42 COG3716 ManZ Phosphotransferas 22.7 3.2E+02 0.007 20.2 6.6 37 42-78 129-165 (269)
43 PF09605 Trep_Strep: Hypotheti 22.4 2.6E+02 0.0056 18.9 6.8 62 5-66 52-119 (186)
44 PF06738 DUF1212: Protein of u 22.1 2.5E+02 0.0053 18.6 7.0 40 12-51 108-148 (193)
45 COG4317 Uncharacterized protei 21.7 2.1E+02 0.0045 17.6 4.3 32 12-43 9-43 (93)
46 KOG0539 Sphingolipid fatty aci 20.7 1.2E+02 0.0027 21.9 2.9 42 5-46 137-179 (240)
No 1
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=99.49 E-value=6.9e-14 Score=84.75 Aligned_cols=62 Identities=34% Similarity=0.585 Sum_probs=55.9
Q ss_pred cccchhcchHHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 034665 2 VSLTKWVPTPIAVIISAAVFALAHLTP-GEFPQLFVLGIALGFSYAQTRNLLTPITIHAFWNS 63 (87)
Q Consensus 2 ~~L~~~~~~~~ailissllFa~~H~~~-~~~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N~ 63 (87)
+.++++.+.+.++++++++||+.|... ..++..++.|+.++++|.||||+|.+++.|+.+|.
T Consensus 28 ~~l~~~~~~~~a~~is~~~f~~~H~~~~~~~~~~~~~g~~~~~~~~~t~sl~~~i~~H~~~n~ 90 (91)
T PF02517_consen 28 NRLRRRFNPWFAILISSLLFALWHLPNGPQFIYAFLFGLLFGYLYLRTGSLWAAIIAHALWNL 90 (91)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Confidence 456777778999999999999999964 34889999999999999999999999999999996
No 2
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=99.40 E-value=1.2e-12 Score=88.76 Aligned_cols=62 Identities=37% Similarity=0.552 Sum_probs=57.1
Q ss_pred cccchhcchHHHHHHHHHHHHHhhcCC----ChHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 034665 2 VSLTKWVPTPIAVIISAAVFALAHLTP----GEFPQLFVLGIALGFSYAQTRNLLTPITIHAFWNS 63 (87)
Q Consensus 2 ~~L~~~~~~~~ailissllFa~~H~~~----~~~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N~ 63 (87)
+++.|+++.+.|+++||++||+.|.+. ..+..++.+|++++++|.||||++.++..|+.+|.
T Consensus 147 ~~l~~~~~~~~a~iissllFal~H~~~~~~~~~~~~~~~~gli~~~~~~~t~~l~~~i~~H~~~N~ 212 (226)
T COG1266 147 GALARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSLWVPILLHALINL 212 (226)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 567889999999999999999999954 45678999999999999999999999999999996
No 3
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=99.26 E-value=3.8e-11 Score=84.86 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Q 034665 10 TPIAVIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRNLLTPITIHAFWNSGVILLLT 70 (87)
Q Consensus 10 ~~~ailissllFa~~H~~~~~~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N~~~~~~~~ 70 (87)
.|.++++||++||+.|. +.+..++.|++++++|+||||++.+|++|+++|.+..+...
T Consensus 157 ~~~a~lisSllFal~H~---~~~~~~l~Gli~~~l~~~tgsL~~~I~~H~~~N~ll~~~vl 214 (222)
T TIGR03008 157 HWPSFLAVTLLFGLEHH---LIVAGLIAGLAYNLLLLRTGSIMACILAHAVTNGLLGLWVL 214 (222)
T ss_pred cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999998 45678889999999999999999999999999998665543
No 4
>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4.2e-06 Score=60.44 Aligned_cols=62 Identities=27% Similarity=0.308 Sum_probs=52.9
Q ss_pred cchHHHHHHHHHHHHHhhcCC--------------------ChHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Q 034665 8 VPTPIAVIISAAVFALAHLTP--------------------GEFPQLFVLGIALGFSYAQTRNLLTPITIHAFWNSGVIL 67 (87)
Q Consensus 8 ~~~~~ailissllFa~~H~~~--------------------~~~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N~~~~~ 67 (87)
++...++....++||++|.+- .|+.++.+.|..-++++.|||++|.|+++|+..|...+=
T Consensus 159 ~s~l~avF~~PLfFGvAH~HHiyEqL~~g~~~~~~ilL~t~fQfsYTtlFG~yTaflF~rTghl~~~iLvHAfCN~MGfP 238 (291)
T KOG4130|consen 159 QSSLQAVFWQPLFFGVAHAHHIYEQLQEGSMTTVSILLTTCFQFSYTTLFGGYTAFLFVRTGHLWCPILVHAFCNIMGFP 238 (291)
T ss_pred hcchhhHHHhhHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHhhcCCh
Confidence 677789999999999999931 156788899999999999999999999999999987654
Q ss_pred HH
Q 034665 68 LL 69 (87)
Q Consensus 68 ~~ 69 (87)
-+
T Consensus 239 ~l 240 (291)
T KOG4130|consen 239 NL 240 (291)
T ss_pred hH
Confidence 33
No 5
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=82.26 E-value=7.4 Score=23.56 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Q 034665 31 FPQLFVLGIALGFSYAQTRNLLTPITIHA 59 (87)
Q Consensus 31 ~~~~~~~G~~l~~~y~~t~sl~~~i~~H~ 59 (87)
.........+-..++.|+||+..++..=.
T Consensus 64 ~~~~l~a~~~~~~~~~~~~~~~~~v~~G~ 92 (99)
T PF05437_consen 64 GNPYLIAALVAALVALRTRNLLLSVLAGV 92 (99)
T ss_pred chHHHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 45566667777778889999999887643
No 6
>COG2311 Predicted membrane protein [Function unknown]
Probab=76.81 E-value=24 Score=27.36 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcC---CCh-HHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHHhCCChH
Q 034665 16 ISAAVFALAHLT---PGE-FPQLFVLGIALGFSYAQT-RNLLTPITIHAFWNSGVILLLTFLQLQGYDLK 80 (87)
Q Consensus 16 issllFa~~H~~---~~~-~~~~~~~G~~l~~~y~~t-~sl~~~i~~H~~~N~~~~~~~~~~~~~g~~~~ 80 (87)
.-=++||.+|.. .++ ...|.+.|+++-..+.++ |.++.....=.+.=....+...++..+|.+.+
T Consensus 104 ~~Lll~G~iH~~fiW~GDIL~~Ya~~g~ill~~~~~~~k~l~~~~~~l~l~~~~~~~l~~~~~~~~~~~~ 173 (394)
T COG2311 104 LLLLLLGLIHALFIWDGDILLAYALTGLILLLFRRRKPKTLLIWATALLLLPVLLGVLLLLVLESGSEAS 173 (394)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhhccCcchH
Confidence 344679999993 234 468899999999988876 55555444444444444444444555666554
No 7
>COG4392 Predicted membrane protein [Function unknown]
Probab=75.51 E-value=7 Score=24.98 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=37.5
Q ss_pred chhcchHHHHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 034665 5 TKWVPTPIAVIISAAVFALAHLT-----PGEFPQLFVLGIALGFSYAQTRNLLTPITIHAF 60 (87)
Q Consensus 5 ~~~~~~~~ailissllFa~~H~~-----~~~~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~ 60 (87)
+|..+..+..++++++.--.=.+ +..-.++.+.|+.-..+++.|||+...+++=+.
T Consensus 38 ~~~L~fvP~a~ltAL~~p~vl~~~~g~~~s~~~p~llA~lvav~la~lTrnll~~il~Gm~ 98 (107)
T COG4392 38 RRFLSFVPVAILTALIAPDVLMPHGGLDPSWNNPYLLAGLVAVALAILTRNLLATILVGMA 98 (107)
T ss_pred HHHHhhccHHHHHHHHhhhHhccCCCcchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666655444332 222357888999999999999999988876544
No 8
>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]
Probab=73.86 E-value=13 Score=30.11 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=33.8
Q ss_pred HHHHHhhcCCC---------------hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 034665 19 AVFALAHLTPG---------------EFPQLFVLGIALGFSYAQTRNLLTPITIHAFW 61 (87)
Q Consensus 19 llFa~~H~~~~---------------~~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~ 61 (87)
++|-+.|.-.. ......++|+..+..|.-|+|+|+.+++|...
T Consensus 752 ~LfvLyHplnA~T~y~rg~PvFf~PiFL~ltglLGL~Ctvty~vT~SlW~iV~lHW~v 809 (827)
T COG4449 752 VLFVLYHPLNALTFYPRGAPVFFRPIFLLLTGLLGLGCTVTYRVTGSLWPIVLLHWAV 809 (827)
T ss_pred HHHHHhhhhhhhhccccCCcceeccHHHHHHHHHhhhhhhhHHhccchHHHHHHHHHH
Confidence 48999998210 12356688999999999999999999999753
No 9
>PF13367 PrsW-protease: Protease prsW family
Probab=69.92 E-value=16 Score=24.58 Aligned_cols=35 Identities=23% Similarity=0.491 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHh---------CCcHHHHHHHHHHHHHHHH
Q 034665 33 QLFVLGIALGFSYAQT---------RNLLTPITIHAFWNSGVIL 67 (87)
Q Consensus 33 ~~~~~G~~l~~~y~~t---------~sl~~~i~~H~~~N~~~~~ 67 (87)
...+.|..++....++ .-+..++..|++||.....
T Consensus 131 ~t~i~g~~l~~~~~~~~~~~~~~~~~~~~~a~~lH~~~N~~~~~ 174 (191)
T PF13367_consen 131 FTAIFGYGLGLAKRRRKRGFRLALLLGFLLAVLLHGLWNFPLSL 174 (191)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4455565566555322 2367789999999998876
No 10
>PF14851 FAM176: FAM176 family
Probab=66.50 E-value=12 Score=25.21 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhc--CCChHHHHHHHHHHHHHHHH
Q 034665 15 IISAAVFALAHL--TPGEFPQLFVLGIALGFSYA 46 (87)
Q Consensus 15 lissllFa~~H~--~~~~~~~~~~~G~~l~~~y~ 46 (87)
++|..+=+..|. +|..+..||+.|+.+|++..
T Consensus 4 llSnsLaaya~I~~~PE~~aLYFv~gVC~GLlLt 37 (153)
T PF14851_consen 4 LLSNSLAAYAHIRDNPERFALYFVSGVCAGLLLT 37 (153)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 567777777777 77788889988888887653
No 11
>PRK10408 putative L-valine exporter; Provisional
Probab=62.40 E-value=35 Score=21.92 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 034665 30 EFPQLFVLGIALGFSYAQTRNLLTPITIHAFWN 62 (87)
Q Consensus 30 ~~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N 62 (87)
..++..+.-.+++.+|+||||+..+.+.-++-=
T Consensus 70 k~~ptlvGf~~l~~~fyktrsIi~aTL~gAl~Y 102 (111)
T PRK10408 70 KLLPTLVGFLVLGACFYKTRSIIIATLLGALAY 102 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 467777777889999999999999887766543
No 12
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=61.08 E-value=37 Score=21.05 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHhhh
Q 034665 31 FPQLFVLGIALGFSYAQTRNLLTPITIHAFWNSGVILLLTFLQLQGYDLKELLQA 85 (87)
Q Consensus 31 ~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N~~~~~~~~~~~~~g~~~~~~~~~ 85 (87)
++.++++|..+...+.+.++.+..+.+=.+.=...=+.+.+...--.|++|+..+
T Consensus 58 i~~f~plG~l~~~~~~~~~~~~~~~~~~~~~sl~iE~~Q~~~~~r~~d~~Dv~~n 112 (133)
T PF04892_consen 58 ILLFFPLGFLLPLLFRRLRSWLLAILIGFLFSLFIELIQLFLPGRSFDIDDVLAN 112 (133)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHH
Confidence 4567889999999998877777776665544444434444433334557776543
No 13
>PHA02758 hypothetical protein; Provisional
Probab=60.20 E-value=29 Score=25.32 Aligned_cols=52 Identities=35% Similarity=0.609 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCCChHH-------HHHHHHHHHHH------------HHHHhCCcHHHHHHHHHHHHHHHHH
Q 034665 17 SAAVFALAHLTPGEFP-------QLFVLGIALGF------------SYAQTRNLLTPITIHAFWNSGVILL 68 (87)
Q Consensus 17 ssllFa~~H~~~~~~~-------~~~~~G~~l~~------------~y~~t~sl~~~i~~H~~~N~~~~~~ 68 (87)
....|+++|++..... -.+..|+.++. =-+|.+.+..+|+-|+.+|.-+...
T Consensus 221 anamfailhlpsrl~agykmtgsdlfaigiaf~ill~inf~arwlw~iyke~giiasiighafynagvsaf 291 (321)
T PHA02758 221 ANAMFAILHLPSRLAAGYKMTGSDLFAIGIAFGILLLINFGARWLWEIYKEGGIIASIIGHAFYNAGVSAF 291 (321)
T ss_pred HHHHHHHHhChHHHhhccccccchhhhHHHHHHHhheeecchhhHHHHHhcCCchhhhhhHHHHHhHHHHH
Confidence 3457999999642111 12333333332 2346688999999999999876544
No 14
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=54.75 E-value=27 Score=23.57 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 034665 33 QLFVLGIALGFSYAQTRNLLTPITIHAFWNSG 64 (87)
Q Consensus 33 ~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N~~ 64 (87)
......++-|++|.|+|++|.+.+--.+--.+
T Consensus 71 Gsm~GA~laGllyr~~~k~~~a~lGEviGTGi 102 (150)
T PF09512_consen 71 GSMFGALLAGLLYRKTKKLWAAALGEVIGTGI 102 (150)
T ss_pred cchHHHHHHHHHHHHhCcchHHHHHHHHhhHH
Confidence 33444455566999999999887665544333
No 15
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=52.27 E-value=42 Score=27.17 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Q 034665 31 FPQLFVLGIALGFSYAQTRNLLTPITIHAFWNSGVILLLTF 71 (87)
Q Consensus 31 ~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N~~~~~~~~~ 71 (87)
..+..+.|.+++++|.+.|+ |++.++-++.|.+....+.+
T Consensus 444 L~PL~vg~aVYSLlY~~hKs-WYSWvLn~l~~~vy~FGFi~ 483 (592)
T KOG2489|consen 444 LFPLLVGGAVYSLLYVEHKS-WYSWVLNSLYNGVYAFGFIF 483 (592)
T ss_pred HHHHHHHHHHHhhhhccccc-HHHHHHHHHHhHHHHHHHHH
Confidence 35778899999999999888 99999999999877665554
No 16
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=47.75 E-value=53 Score=19.76 Aligned_cols=33 Identities=12% Similarity=-0.015 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHhh
Q 034665 52 LTPITIHAFWNSGVILLLTFLQLQGYDLKELLQ 84 (87)
Q Consensus 52 ~~~i~~H~~~N~~~~~~~~~~~~~g~~~~~~~~ 84 (87)
+..+..|...-...+...+++-.+|.|++++.+
T Consensus 12 ~~~l~vy~~~s~~~~~~~y~~v~~GvDv~~~~~ 44 (91)
T PF06916_consen 12 YVALGVYLGLSFISLGSCYLAVSSGVDVIALLE 44 (91)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 567888888888888887776556888777654
No 17
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=46.69 E-value=90 Score=21.31 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=30.4
Q ss_pred hhcchHHHHHHHHHHHHHhhc----CCChHHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHH
Q 034665 6 KWVPTPIAVIISAAVFALAHL----TPGEFPQLFVLGIALGFSYAQ--TRNLLTPITIHAFWN 62 (87)
Q Consensus 6 ~~~~~~~ailissllFa~~H~----~~~~~~~~~~~G~~l~~~y~~--t~sl~~~i~~H~~~N 62 (87)
.|.+...++.+.+++.|+.-. .+...+...+.|++--.+..+ .||-+...+...+.+
T Consensus 55 ~KV~K~G~~~i~~~i~gl~~~~~G~~~~~~~~~ii~gliaeli~~~g~Yks~~~~~ia~~~~~ 117 (189)
T TIGR02185 55 AKVPKRGVIFIFGILLGLLFFLMGMYWPMIISSIIGGLLADIIASTGGYKNKRKVTIAYVLFF 117 (189)
T ss_pred hhcCCccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 455555566666666555433 222344555666655555442 256666666665554
No 18
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=46.18 E-value=99 Score=21.50 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH--HHhCCC
Q 034665 31 FPQLFVLGIALGFSYAQTRNLLTPITIHAFWNSGVILLLTFL--QLQGYD 78 (87)
Q Consensus 31 ~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N~~~~~~~~~~--~~~g~~ 78 (87)
.......|+++++...|+++....+..=..-..........+ ...|.|
T Consensus 64 ~~~~~l~g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 113 (290)
T PF09991_consen 64 LLFFGLPGLVLGYLLRKKRSWSRSILAGTLASLLGVLVFFLLLAYLSGIN 113 (290)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456678899999999998886666555444444443333322 334555
No 19
>PLN02434 fatty acid hydroxylase
Probab=45.39 E-value=74 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=25.6
Q ss_pred cchHHHHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHH
Q 034665 8 VPTPIAVIISAAVFALAHL-TPGEFPQLFVLGIALGFSY 45 (87)
Q Consensus 8 ~~~~~ailissllFa~~H~-~~~~~~~~~~~G~~l~~~y 45 (87)
+++..++++...++.+.+. .+......+..|.++|++.
T Consensus 138 ~PP~~~~~l~~~~~~l~~~~~~~~~a~~~~~G~l~gYl~ 176 (237)
T PLN02434 138 FPPAATAILCVPFWNLIALFATPATAPALFGGGLLGYVM 176 (237)
T ss_pred cCcHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHH
Confidence 5777777778888888887 2334456666777777543
No 20
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=41.77 E-value=40 Score=26.84 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhCC
Q 034665 14 VIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRN 50 (87)
Q Consensus 14 ilissllFa~~H~~~~~~~~~~~~G~~l~~~y~~t~s 50 (87)
..--+.-++..|..+..+..|.+.|+.+++.++|+|.
T Consensus 130 A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y~~~~ 166 (504)
T PRK03356 130 AKELGLAYSLFHWGPLPWATYSFLSVAFGYFFFVRKM 166 (504)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456777888898877788889999999998887643
No 21
>PRK09950 putative transporter; Provisional
Probab=40.81 E-value=38 Score=26.96 Aligned_cols=35 Identities=3% Similarity=0.157 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHH-HHHHhC
Q 034665 15 IISAAVFALAHLTPGEFPQLFVLGIALGF-SYAQTR 49 (87)
Q Consensus 15 lissllFa~~H~~~~~~~~~~~~G~~l~~-~y~~t~ 49 (87)
.--+.-++..|..+..+..|.+.|+.+++ .|.|++
T Consensus 129 ~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~~rk~ 164 (506)
T PRK09950 129 LEYSVSYSFFHWGISAWATYALASLIMAYHFHVRKN 164 (506)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33467788888877777888899999999 565553
No 22
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=40.00 E-value=31 Score=27.03 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhCC
Q 034665 14 VIISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTRN 50 (87)
Q Consensus 14 ilissllFa~~H~~~~~~~~~~~~G~~l~~~y~~t~s 50 (87)
..--+.-++..|..+..+..|.+.|+.+++.+.|+|+
T Consensus 82 A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~~rk~~ 118 (453)
T TIGR00842 82 AQEQALAYTLFHWGIHAWAIYALVGLALAYFHVRKGL 118 (453)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhheecCC
Confidence 4445778888999877788888999999997776543
No 23
>PRK10835 hypothetical protein; Provisional
Probab=39.63 E-value=1.6e+02 Score=22.09 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=26.4
Q ss_pred HHHHHhhc---CCChH-HHHHHHHHHHHHHHHHh---CCcHHH
Q 034665 19 AVFALAHL---TPGEF-PQLFVLGIALGFSYAQT---RNLLTP 54 (87)
Q Consensus 19 llFa~~H~---~~~~~-~~~~~~G~~l~~~y~~t---~sl~~~ 54 (87)
++||++|. ..+++ ..|.+.|+++...+.++ |.++..
T Consensus 86 l~~GliH~~llw~GDIL~~YAv~Gl~l~~~~~~~~~~~~Ll~~ 128 (373)
T PRK10835 86 VLLGFIHGLLFWDGDILLAYGLVGLICWRLIRDAPSVKSLFNT 128 (373)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHhccchhhHHHHH
Confidence 57999997 33555 57899999999888874 555543
No 24
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=37.33 E-value=1.3e+02 Score=20.29 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 034665 30 EFPQLFVLGIALGFSYAQTRNLLTPITIHAFWNSG 64 (87)
Q Consensus 30 ~~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N~~ 64 (87)
.++.....+++-|++|.|+|+.+.+++...+--.+
T Consensus 71 afpg~~~~a~laGliyrk~~~~~~a~~ge~igt~i 105 (160)
T TIGR02359 71 AFPGGMPGALLAGLLYRFGRKHYWASLGEILGTGI 105 (160)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 35556677888899999998887766665554433
No 25
>PRK09921 permease DsdX; Provisional
Probab=33.91 E-value=1.2e+02 Score=23.66 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=36.2
Q ss_pred cchhcchHHHHHHHHHHHHHhhcCCC----------------hHHHHHHHHHHHHHHHHHhCC
Q 034665 4 LTKWVPTPIAVIISAAVFALAHLTPG----------------EFPQLFVLGIALGFSYAQTRN 50 (87)
Q Consensus 4 L~~~~~~~~ailissllFa~~H~~~~----------------~~~~~~~~G~~l~~~y~~t~s 50 (87)
++.|.+...+.+++|+..|+.=..+. .....+.+|.++|-+.++||.
T Consensus 23 ~k~k~~~f~aLl~~ai~~gl~~g~~~~~~~~~i~~g~g~t~g~i~~ii~lGai~G~lle~SGa 85 (445)
T PRK09921 23 VKFKFHPFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGA 85 (445)
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 46788999999999999998866331 123467889999999988763
No 26
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=32.63 E-value=51 Score=17.43 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=15.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 034665 16 ISAAVFALAHLTPGEFPQLFVLGIALGF 43 (87)
Q Consensus 16 issllFa~~H~~~~~~~~~~~~G~~l~~ 43 (87)
+-|+.|++.-.+ ...+.++|+++|+
T Consensus 2 lkSl~fa~iMVP---Vvma~ilglIyGl 26 (41)
T PF10766_consen 2 LKSLAFAVIMVP---VVMALILGLIYGL 26 (41)
T ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 346777777654 2455566666654
No 27
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=30.62 E-value=58 Score=25.75 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHh
Q 034665 16 ISAAVFALAHLTPGEFPQLFVLGIALGFSYAQT 48 (87)
Q Consensus 16 issllFa~~H~~~~~~~~~~~~G~~l~~~y~~t 48 (87)
--+.-++..|..+..+..|.+.|+.+++.++++
T Consensus 121 ~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y~k 153 (485)
T PF02028_consen 121 EWAMAYSFFHWGFHAWAIYALVGLAIAYFFYNK 153 (485)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHheeeeec
Confidence 567778888887777788899999999988874
No 28
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=30.59 E-value=73 Score=19.51 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Q 034665 31 FPQLFVLGIALGFSYAQTRNLLTPITIHAFWNSGVILLLTF 71 (87)
Q Consensus 31 ~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N~~~~~~~~~ 71 (87)
++..+++|+++-.+|+-+++-..++--=.-||+.+...+..
T Consensus 37 m~~lmllGL~WiVvyYi~~~~i~pi~~lG~WN~~IGfg~~~ 77 (87)
T PF06781_consen 37 MLGLMLLGLLWIVVYYISGGQIPPIPDLGNWNLAIGFGLMI 77 (87)
T ss_pred HHHHHHHHHHHHhhhhcccCCCCCcccccchHHHHHHHHHH
Confidence 45678899999999999977545555556788877665544
No 29
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=29.46 E-value=1.1e+02 Score=18.84 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Q 034665 31 FPQLFVLGIALGFSYAQTRNLLTPITIHAFWNSGVILLLTF 71 (87)
Q Consensus 31 ~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N~~~~~~~~~ 71 (87)
++..++.|+++-.+|+-++.-.+ +--=.-||..+...+..
T Consensus 38 m~~lm~~Gl~WlvvyYl~~~~~P-~~~lG~WN~~IGfg~~~ 77 (87)
T PRK02251 38 FVALMIIGLIWLVVYYLSNGSLP-IPALGAWNLVIGFGLIM 77 (87)
T ss_pred HHHHHHHHHHHHHHHhhhCCCcC-cccccchhHHHHHHHHH
Confidence 45678899999999999866555 54445688776555443
No 30
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.27 E-value=78 Score=20.32 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034665 31 FPQLFVLGIALGFSYAQT 48 (87)
Q Consensus 31 ~~~~~~~G~~l~~~y~~t 48 (87)
.+..+++|++.|++..|.
T Consensus 2 ~~i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRL 19 (128)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456778888888877665
No 31
>PRK09928 choline transport protein BetT; Provisional
Probab=27.54 E-value=74 Score=26.42 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhC
Q 034665 15 IISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTR 49 (87)
Q Consensus 15 lissllFa~~H~~~~~~~~~~~~G~~l~~~y~~t~ 49 (87)
.--+..++..|..+..+..|.+.|+.+++.++|.|
T Consensus 137 a~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~~ 171 (679)
T PRK09928 137 ARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYN 171 (679)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCC
Confidence 34567788888877777888999999999888753
No 32
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=27.45 E-value=1.1e+02 Score=19.32 Aligned_cols=8 Identities=38% Similarity=0.982 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 034665 35 FVLGIALG 42 (87)
Q Consensus 35 ~~~G~~l~ 42 (87)
+..|++|+
T Consensus 80 ~vvG~iF~ 87 (107)
T PF14017_consen 80 FVVGVIFA 87 (107)
T ss_pred HHHHHHHH
Confidence 33344433
No 33
>PRK10034 fructuronate transporter; Provisional
Probab=27.26 E-value=1.8e+02 Score=22.79 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=34.8
Q ss_pred chhcchHHHHHHHHHHHHHhhcCC-C---------------hHHHHHHHHHHHHHHHHHhCC
Q 034665 5 TKWVPTPIAVIISAAVFALAHLTP-G---------------EFPQLFVLGIALGFSYAQTRN 50 (87)
Q Consensus 5 ~~~~~~~~ailissllFa~~H~~~-~---------------~~~~~~~~G~~l~~~y~~t~s 50 (87)
+.|.+...+.++++++.++.=..+ . .....+.+|.+++-+.++||.
T Consensus 22 k~k~~~fialli~al~~gl~~Gm~~~~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGa 83 (447)
T PRK10034 22 KFKINSMVALLVAALSVGMLAGMDLMKLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGA 83 (447)
T ss_pred HhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 458899999999999999875532 1 234567889999988887763
No 34
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=26.05 E-value=1.4e+02 Score=19.74 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=28.9
Q ss_pred cccchhcchHHHHHHHHHHHHHhhc---CCCh---HHHHHHHHHHHHHHHH
Q 034665 2 VSLTKWVPTPIAVIISAAVFALAHL---TPGE---FPQLFVLGIALGFSYA 46 (87)
Q Consensus 2 ~~L~~~~~~~~ailissllFa~~H~---~~~~---~~~~~~~G~~l~~~y~ 46 (87)
|.+-++.+..++.+++++.|.+.-. .+.. .+...+.|+..+.++.
T Consensus 58 P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~ 108 (156)
T PF05978_consen 58 PSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWT 108 (156)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhH
Confidence 5667888999999999999886654 3322 2233455555555443
No 35
>PRK09821 putative transporter; Provisional
Probab=25.99 E-value=2e+02 Score=22.62 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=35.4
Q ss_pred cchhcchHHHHHHHHHHHHHhhcCCC----------------hHHHHHHHHHHHHHHHHHhC
Q 034665 4 LTKWVPTPIAVIISAAVFALAHLTPG----------------EFPQLFVLGIALGFSYAQTR 49 (87)
Q Consensus 4 L~~~~~~~~ailissllFa~~H~~~~----------------~~~~~~~~G~~l~~~y~~t~ 49 (87)
.++|.++..+.++.+++.|+.=..+. .....+.+|.++|-+.+.||
T Consensus 22 ~k~kl~pf~alii~al~~gl~~G~~~~~i~~~i~~G~g~tl~~~~lii~lGa~~G~~le~SG 83 (454)
T PRK09821 22 IKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSG 83 (454)
T ss_pred HHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 47889999999999999999865331 23356788999998888754
No 36
>KOG3455 consensus Predicted membrane protein [Function unknown]
Probab=25.72 E-value=90 Score=20.83 Aligned_cols=70 Identities=9% Similarity=-0.068 Sum_probs=43.4
Q ss_pred cccc-hhcchHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH-------HHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Q 034665 2 VSLT-KWVPTPIAVIISAAVFALAHLTPGEFPQLFVLGIALG-------FSYAQTRNLLTPITIHAFWNSGVILLLTF 71 (87)
Q Consensus 2 ~~L~-~~~~~~~ailissllFa~~H~~~~~~~~~~~~G~~l~-------~~y~~t~sl~~~i~~H~~~N~~~~~~~~~ 71 (87)
|.+. |.+|.|..+-...-+...+|++......+..+..+++ +++.+|-++-...+.-..-|.+..+.+..
T Consensus 45 ~~l~~RtfGiwtlLscilrf~ca~~i~nk~i~~~~~~s~~lal~HflTE~l~yrT~tig~~~~~p~vv~s~Sl~~M~~ 122 (139)
T KOG3455|consen 45 NGLSARTFGIWTLLSCILRFLCAFYIHNKPIYIATFLSFILALGHFLTELLFYRTMTIGIGVLTPLVVNSISLVGMLK 122 (139)
T ss_pred chhhhHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccceEEeeeeehhhhHHHHHH
Confidence 3444 6778887666666667777775443333222333332 46778877777777777778777776655
No 37
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=24.36 E-value=2.2e+02 Score=22.33 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=34.8
Q ss_pred cchhcchHHHHHHHHHHHHHhhcCCC----------------hHHHHHHHHHHHHHHHHHhC
Q 034665 4 LTKWVPTPIAVIISAAVFALAHLTPG----------------EFPQLFVLGIALGFSYAQTR 49 (87)
Q Consensus 4 L~~~~~~~~ailissllFa~~H~~~~----------------~~~~~~~~G~~l~~~y~~t~ 49 (87)
.+.|+++..+.+++|++.|+.=..+. .....+.+|.++|-+.++||
T Consensus 18 ~k~Kl~pf~alli~a~~~gl~~Gm~~~~~~~~i~~G~g~~l~si~iii~lGai~G~~l~~SG 79 (438)
T PRK14984 18 IRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCG 79 (438)
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788999999999999998866331 22356788999997777664
No 38
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=23.59 E-value=1.1e+02 Score=21.60 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=15.9
Q ss_pred CcHHHHHHHHHHHHHHHHHHH
Q 034665 50 NLLTPITIHAFWNSGVILLLT 70 (87)
Q Consensus 50 sl~~~i~~H~~~N~~~~~~~~ 70 (87)
-+..++++|++.|..+.+...
T Consensus 190 ~l~~AIllHaliD~~aal~q~ 210 (223)
T PF10086_consen 190 YLVLAILLHALIDFPAALYQA 210 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355788999999998766544
No 39
>PRK10132 hypothetical protein; Provisional
Probab=23.39 E-value=1e+02 Score=19.51 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=18.8
Q ss_pred HHhhcCCChH-HHHHHHHHHHHHHHHHh
Q 034665 22 ALAHLTPGEF-PQLFVLGIALGFSYAQT 48 (87)
Q Consensus 22 a~~H~~~~~~-~~~~~~G~~l~~~y~~t 48 (87)
..+|-+|+.. .....+|+++|++.-|+
T Consensus 80 ~~V~~~Pw~svgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 80 TFVRERPWCSVGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHhcc
Confidence 3567777654 45677899999986654
No 40
>TIGR00827 EIIC-GAT PTS system, galactitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The only characterized member of this family of PTS transporters is the E. coli galactitol transporter. Gat family PTS systems typically have 3 components: IIA, IIB and IIC. This family is specific for the IIC component of the PTS Gat family.
Probab=23.37 E-value=1.7e+02 Score=22.91 Aligned_cols=51 Identities=4% Similarity=0.037 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHhh
Q 034665 31 FPQLFVLGIALGFSYAQTRNLLTPITIHAFWNSGVILLLTFLQLQGYDLKELLQ 84 (87)
Q Consensus 31 ~~~~~~~G~~l~~~y~~t~sl~~~i~~H~~~N~~~~~~~~~~~~~g~~~~~~~~ 84 (87)
.-++.-.-+.=+.+|.-|+|+|..+++=.....+.+.. .+...++.||.++
T Consensus 115 iWN~wh~~~~G~~vy~~T~s~~~gi~~a~~~~i~~l~~---aD~~a~~~q~~~g 165 (407)
T TIGR00827 115 IWNFWHYTFTGAVVYLVTGSIIQGLIGAVMHAAVALKV---ADWTAPMVSNFYE 165 (407)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHhcHHHHHhcC
Confidence 33444444444567888999999998877766555444 2445566666554
No 41
>PRK10404 hypothetical protein; Provisional
Probab=23.02 E-value=1e+02 Score=19.14 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=17.8
Q ss_pred HHhhcCCChHH-HHHHHHHHHHHHHHH
Q 034665 22 ALAHLTPGEFP-QLFVLGIALGFSYAQ 47 (87)
Q Consensus 22 a~~H~~~~~~~-~~~~~G~~l~~~y~~ 47 (87)
-.+|-+|+..+ ....+|+++|++.-|
T Consensus 74 ~yV~e~Pw~avGiaagvGlllG~Ll~R 100 (101)
T PRK10404 74 DYVHEKPWQGIGVGAAVGLVLGLLLAR 100 (101)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHhc
Confidence 34677776544 566789999988543
No 42
>COG3716 ManZ Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
Probab=22.68 E-value=3.2e+02 Score=20.19 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=28.8
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 034665 42 GFSYAQTRNLLTPITIHAFWNSGVILLLTFLQLQGYD 78 (87)
Q Consensus 42 ~~~y~~t~sl~~~i~~H~~~N~~~~~~~~~~~~~g~~ 78 (87)
|.-....||++-|++.=.++|.+.+..-++...-|++
T Consensus 129 gaslA~~G~ilGpilf~~l~N~i~~~~r~~~~~~GYk 165 (269)
T COG3716 129 GASLALQGSILGPILFFLLFNILRLAIRWYGLHYGYK 165 (269)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567999999999999999999988886544443
No 43
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=22.37 E-value=2.6e+02 Score=18.95 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=34.4
Q ss_pred chhcchHHHHHHHHHHHHHhhcC----CChHHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHH
Q 034665 5 TKWVPTPIAVIISAAVFALAHLT----PGEFPQLFVLGIALGFSYAQ--TRNLLTPITIHAFWNSGVI 66 (87)
Q Consensus 5 ~~~~~~~~ailissllFa~~H~~----~~~~~~~~~~G~~l~~~y~~--t~sl~~~i~~H~~~N~~~~ 66 (87)
..|.+...+..+.+++.|+.-.- +...+...+.|++--.+..+ .||.+...+.....|....
T Consensus 52 ~~KV~K~G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g~y~~~~~~~iay~vf~~~~~ 119 (186)
T PF09605_consen 52 VAKVPKRGAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKGGYKSKKRNTIAYAVFSLGYM 119 (186)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 34556666666666666666331 23344555666666665533 2566666666666555443
No 44
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=22.13 E-value=2.5e+02 Score=18.61 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHhCCc
Q 034665 12 IAVIISAAVFALAHL-TPGEFPQLFVLGIALGFSYAQTRNL 51 (87)
Q Consensus 12 ~ailissllFa~~H~-~~~~~~~~~~~G~~l~~~y~~t~sl 51 (87)
.+..+++..|+.+=. ++.+++..++.|++.+++....++.
T Consensus 108 l~~~l~~~~fa~lfgg~~~~~~~a~i~g~~~~~~~~~~~r~ 148 (193)
T PF06738_consen 108 LAAGLASAAFALLFGGSWIDMIVAFILGLLVGLLRQLLSRR 148 (193)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677777777722 4567888899999888888775443
No 45
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.70 E-value=2.1e+02 Score=17.62 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhcC---CChHHHHHHHHHHHHH
Q 034665 12 IAVIISAAVFALAHLT---PGEFPQLFVLGIALGF 43 (87)
Q Consensus 12 ~ailissllFa~~H~~---~~~~~~~~~~G~~l~~ 43 (87)
.|-++..++|++.|.. |+......++|+..|.
T Consensus 9 gAGllVGiiyaLl~vrsPAPP~iAlvGllGilvGe 43 (93)
T COG4317 9 GAGLLVGIIYALLKVRSPAPPAIALVGLLGILVGE 43 (93)
T ss_pred hhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 4556778999999993 2334455567777775
No 46
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=20.73 E-value=1.2e+02 Score=21.88 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=31.3
Q ss_pred chhcchHHHHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHH
Q 034665 5 TKWVPTPIAVIISAAVFALAHL-TPGEFPQLFVLGIALGFSYA 46 (87)
Q Consensus 5 ~~~~~~~~ailissllFa~~H~-~~~~~~~~~~~G~~l~~~y~ 46 (87)
+--+++..+.++.+.++-.++. .+.....++..|.++|++.+
T Consensus 137 RLVfPP~~~~il~~pfy~~~~~vl~~~~~~a~faG~l~GYV~Y 179 (240)
T KOG0539|consen 137 RLVFPPTPFAILAAPFYLILSLVLPHPVAPAGFAGGLLGYVCY 179 (240)
T ss_pred eEecCCchHHHHHHHHHHHHHHhcCcchhhhhhccchhhhhhh
Confidence 3446777888888888888888 34456678888888988644
Done!