Query 034665
Match_columns 87
No_of_seqs 243 out of 1022
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 08:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ksf_A Sensor protein KDPD; me 29.1 92 0.0031 18.4 5.3 64 1-64 1-67 (107)
2 2wsw_A BCCT family betaine/car 15.7 80 0.0027 24.1 2.2 32 15-46 136-167 (509)
3 2k21_A Potassium voltage-gated 14.4 1.3E+02 0.0045 19.0 2.6 18 31-48 62-79 (138)
4 2hac_A T-cell surface glycopro 13.4 1.4E+02 0.0049 14.3 2.3 17 33-49 11-27 (33)
5 3p5n_A RIBU, riboflavin uptake 11.9 3.1E+02 0.011 17.4 4.9 21 33-53 91-111 (189)
6 4ain_A Glycine betaine transpo 11.0 51 0.0018 25.4 -0.1 34 16-49 139-172 (539)
7 1z65_A PRPLP, prion-like prote 10.3 1.8E+02 0.0061 13.6 2.1 18 5-22 2-19 (30)
8 1scf_A Stem cell factor; steel 9.5 65 0.0022 22.7 0.0 18 33-50 224-241 (273)
9 2vda_B Maltoporin; sugar trans 8.2 90 0.0031 14.2 0.2 20 2-21 3-22 (28)
10 3o65_A Putative ataxin-3-like 7.6 1.7E+02 0.0057 19.5 1.4 12 54-65 14-25 (191)
No 1
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=29.11 E-value=92 Score=18.36 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=36.2
Q ss_pred CcccchhcchHHHHHHHHHHHH--HhhcCCChHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHH
Q 034665 1 MVSLTKWVPTPIAVIISAAVFA--LAHLTPGEFPQLFVLGIALGFSYAQT-RNLLTPITIHAFWNSG 64 (87)
Q Consensus 1 m~~L~~~~~~~~ailissllFa--~~H~~~~~~~~~~~~G~~l~~~y~~t-~sl~~~i~~H~~~N~~ 64 (87)
||.+++..-......+.++.-. ..+.+..+....+..|++..-.+... -.+..++..=...|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~n~~l~fll~Vv~~A~~~g~~pa~~aa~ls~l~~nff 67 (107)
T 2ksf_A 1 MVQIQGSVVAAALSAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVVATVINVVSFDLF 67 (107)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHSTTSSCCSSHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 5666555433333333332211 12244455667777888877766544 3788888887777753
No 2
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=15.70 E-value=80 Score=24.12 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 034665 15 IISAAVFALAHLTPGEFPQLFVLGIALGFSYA 46 (87)
Q Consensus 15 lissllFa~~H~~~~~~~~~~~~G~~l~~~y~ 46 (87)
.-.+.-++..|.....+..|.+.|+.+++..+
T Consensus 136 a~~Am~~tffHWG~~~WaiYal~~lalayf~y 167 (509)
T 2wsw_A 136 KEIGLAYSLFHWGPLPWATYSFLSVAFAYFFF 167 (509)
T ss_dssp HHHHHHHHHHHTSHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 44566677777766566778899999999777
No 3
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=14.43 E-value=1.3e+02 Score=19.04 Aligned_cols=18 Identities=33% Similarity=0.624 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034665 31 FPQLFVLGIALGFSYAQT 48 (87)
Q Consensus 31 ~~~~~~~G~~l~~~y~~t 48 (87)
+...|+.|++++++.-|+
T Consensus 62 ffgff~~GImLsYiRSKk 79 (138)
T 2k21_A 62 FFGFFTLGIMLSYIRSKK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhh
Confidence 345678899999887764
No 4
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=13.44 E-value=1.4e+02 Score=14.33 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhC
Q 034665 33 QLFVLGIALGFSYAQTR 49 (87)
Q Consensus 33 ~~~~~G~~l~~~y~~t~ 49 (87)
..++-|+++..+|.|-|
T Consensus 11 iL~iYgii~T~Ly~R~K 27 (33)
T 2hac_A 11 ILFIYGVILTALFLRVK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677888888887743
No 5
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=11.85 E-value=3.1e+02 Score=17.40 Aligned_cols=21 Identities=10% Similarity=-0.066 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhCCcHH
Q 034665 33 QLFVLGIALGFSYAQTRNLLT 53 (87)
Q Consensus 33 ~~~~~G~~l~~~y~~t~sl~~ 53 (87)
.....|+..+++|.|+++.+.
T Consensus 91 ~~~~~g~~~~~~y~k~~~~~~ 111 (189)
T 3p5n_A 91 AGASFLLTAYAIYKNKRSTKS 111 (189)
T ss_dssp HHHHHHHHHHHHHSSSCSHHH
T ss_pred HHHHHHHHHHHHHHhcccHHH
Confidence 334555555677777665543
No 6
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=11.05 E-value=51 Score=25.41 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhC
Q 034665 16 ISAAVFALAHLTPGEFPQLFVLGIALGFSYAQTR 49 (87)
Q Consensus 16 issllFa~~H~~~~~~~~~~~~G~~l~~~y~~t~ 49 (87)
-.+.-++..|.....+..|.+.|+.+++..+|+|
T Consensus 139 ~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk~ 172 (539)
T 4ain_A 139 GVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVG 172 (539)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCTC
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677777766566678899999999777654
No 7
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=10.33 E-value=1.8e+02 Score=13.61 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=11.5
Q ss_pred chhcchHHHHHHHHHHHH
Q 034665 5 TKWVPTPIAVIISAAVFA 22 (87)
Q Consensus 5 ~~~~~~~~ailissllFa 22 (87)
+|+.|.|+-.++-.++|+
T Consensus 2 rkhLG~~wlai~c~LLfs 19 (30)
T 1z65_A 2 KNRLGTWWVAILCMLLAS 19 (30)
T ss_dssp CSSCSSHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHh
Confidence 456676666666666665
No 8
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=9.51 E-value=65 Score=22.70 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 034665 33 QLFVLGIALGFSYAQTRN 50 (87)
Q Consensus 33 ~~~~~G~~l~~~y~~t~s 50 (87)
.-.+.|+++|.+|+|.+.
T Consensus 224 ~slvigf~~ga~~wk~k~ 241 (273)
T 1scf_A 224 FSLIIGFAFGALYWKKRQ 241 (273)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHhhcccC
Confidence 346789999999998764
No 9
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=8.23 E-value=90 Score=14.20 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=11.4
Q ss_pred cccchhcchHHHHHHHHHHH
Q 034665 2 VSLTKWVPTPIAVIISAAVF 21 (87)
Q Consensus 2 ~~L~~~~~~~~ailissllF 21 (87)
-.|++|-....|+.+.+-+|
T Consensus 3 itlrkrrklplavav~agv~ 22 (28)
T 2vda_B 3 ITLRKRRKLPLAVAVAAGVM 22 (28)
T ss_dssp CCCCCCCCCTHHHHHHHHTT
T ss_pred EEeeccccCchHHHHHHHHh
Confidence 34666666666666555444
No 10
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=7.57 E-value=1.7e+02 Score=19.48 Aligned_cols=12 Identities=17% Similarity=-0.108 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q 034665 54 PITIHAFWNSGV 65 (87)
Q Consensus 54 ~i~~H~~~N~~~ 65 (87)
-...|++||++.
T Consensus 14 LCalHaLNnLLQ 25 (191)
T 3o65_A 14 LCAQHCLNNLLQ 25 (191)
T ss_dssp CHHHHHHHHHHT
T ss_pred hHHHHHHHHHhc
Confidence 357899999876
Done!