Query 034665
Match_columns 87
No_of_seqs 243 out of 1022
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 08:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034665.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034665hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjd2 f.23.11.1 (D:196-241) 47.4 7.3 0.00053 19.1 2.4 23 33-55 13-35 (46)
2 d3cx5d2 f.23.11.1 (D:261-307) 16.4 55 0.004 15.8 2.4 21 34-54 14-34 (47)
3 d2nr9a1 f.51.1.1 (A:4-192) Glp 5.6 1.2E+02 0.0088 17.5 1.5 16 33-48 168-183 (189)
4 d1pv7a_ f.38.1.2 (A:) Lactose 5.5 2.9E+02 0.021 16.0 3.4 19 46-64 4-22 (417)
5 d1q90g_ f.23.26.1 (G:) PetG su 5.4 1.6E+02 0.011 12.5 1.7 10 35-44 5-14 (30)
6 d2j4ba1 d.379.1.1 (A:18-148) T 5.2 2.2E+02 0.016 15.8 2.4 17 49-65 25-41 (131)
7 d1q90m_ f.23.25.1 (M:) PetM su 4.7 1.9E+02 0.014 12.5 2.9 19 31-49 12-30 (34)
8 d1ppjw_ f.23.14.1 (W:) Subunit 4.5 1.8E+02 0.013 14.5 1.5 7 6-12 15-21 (62)
9 d2nxpa1 d.379.1.1 (A:195-343) 4.4 2.6E+02 0.019 15.8 2.4 17 49-65 43-59 (149)
10 d3cx5i1 f.23.14.1 (I:4-58) Sub 4.4 1.8E+02 0.013 14.1 1.4 16 4-19 7-22 (55)
No 1
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=47.41 E-value=7.3 Score=19.08 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhCCcHHHH
Q 034665 33 QLFVLGIALGFSYAQTRNLLTPI 55 (87)
Q Consensus 33 ~~~~~G~~l~~~y~~t~sl~~~i 55 (87)
..+.++++.+..|+..+..|.++
T Consensus 13 v~~~l~~l~~l~yy~KR~~Ws~l 35 (46)
T d1ppjd2 13 MLLMMGLLLPLVYAMKRHKWSVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Confidence 45567777888888888888765
No 2
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.45 E-value=55 Score=15.75 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhCCcHHH
Q 034665 34 LFVLGIALGFSYAQTRNLLTP 54 (87)
Q Consensus 34 ~~~~G~~l~~~y~~t~sl~~~ 54 (87)
.++++++++..++..|--|.+
T Consensus 14 ~~i~s~l~~~~~y~KR~kWs~ 34 (47)
T d3cx5d2 14 VIILSSLYLLSIWVKKFKWAG 34 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 344555555555554444544
No 3
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=5.59 E-value=1.2e+02 Score=17.51 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 034665 33 QLFVLGIALGFSYAQT 48 (87)
Q Consensus 33 ~~~~~G~~l~~~y~~t 48 (87)
.-++.|+++++++.|.
T Consensus 168 ~G~l~G~~~g~~~~~~ 183 (189)
T d2nr9a1 168 SGLIVGLIWGFIDSKL 183 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 3457788888887654
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.49 E-value=2.9e+02 Score=15.99 Aligned_cols=19 Identities=11% Similarity=-0.089 Sum_probs=9.3
Q ss_pred HHhCCcHHHHHHHHHHHHH
Q 034665 46 AQTRNLLTPITIHAFWNSG 64 (87)
Q Consensus 46 ~~t~sl~~~i~~H~~~N~~ 64 (87)
.|+||.|.-...++.....
T Consensus 4 lkn~~~~~l~~~~f~~~~~ 22 (417)
T d1pv7a_ 4 LKNTNFWMFGLFFFFYFFI 22 (417)
T ss_dssp HHSHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHH
Confidence 4445555555555444443
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.40 E-value=1.6e+02 Score=12.54 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q 034665 35 FVLGIALGFS 44 (87)
Q Consensus 35 ~~~G~~l~~~ 44 (87)
.+.|+++|.+
T Consensus 5 ll~GivlGli 14 (30)
T d1q90g_ 5 LLCGIVLGLV 14 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhHHHhhH
Confidence 4566666654
No 6
>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}
Probab=5.18 E-value=2.2e+02 Score=15.79 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.3
Q ss_pred CCcHHHHHHHHHHHHHH
Q 034665 49 RNLLTPITIHAFWNSGV 65 (87)
Q Consensus 49 ~sl~~~i~~H~~~N~~~ 65 (87)
.++..|+.+|+-.+.+.
T Consensus 25 ~~lLyPvFvh~yL~Lv~ 41 (131)
T d2j4ba1 25 LPLLYPLFIHIYFDLIQ 41 (131)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67999999999888763
No 7
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.69 E-value=1.9e+02 Score=12.51 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 034665 31 FPQLFVLGIALGFSYAQTR 49 (87)
Q Consensus 31 ~~~~~~~G~~l~~~y~~t~ 49 (87)
++...+.|+..|++..|-.
T Consensus 12 mig~tl~glaigfvllrve 30 (34)
T d1q90m_ 12 MVGMTLVGLAIGFVLLRVE 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheeeH
Confidence 4566778888888777643
No 8
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.50 E-value=1.8e+02 Score=14.54 Aligned_cols=7 Identities=14% Similarity=-0.026 Sum_probs=2.6
Q ss_pred hhcchHH
Q 034665 6 KWVPTPI 12 (87)
Q Consensus 6 ~~~~~~~ 12 (87)
||-+...
T Consensus 15 rRnStf~ 21 (62)
T d1ppjw_ 15 RRTSTFA 21 (62)
T ss_dssp SSHHHHH
T ss_pred HhhhHHH
Confidence 3333333
No 9
>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.43 E-value=2.6e+02 Score=15.80 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=14.4
Q ss_pred CCcHHHHHHHHHHHHHH
Q 034665 49 RNLLTPITIHAFWNSGV 65 (87)
Q Consensus 49 ~sl~~~i~~H~~~N~~~ 65 (87)
.++..|+.+|.-.+.+.
T Consensus 43 ~~lLyPvFvh~yL~Lv~ 59 (149)
T d2nxpa1 43 SQLFYPLFVHMYLELVY 59 (149)
T ss_dssp GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67999999999988763
No 10
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.41 E-value=1.8e+02 Score=14.11 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=7.0
Q ss_pred cchhcchHHHHHHHHH
Q 034665 4 LTKWVPTPIAVIISAA 19 (87)
Q Consensus 4 L~~~~~~~~ailissl 19 (87)
+.||-....+.++.+.
T Consensus 7 lfrRnSv~~~tI~~gA 22 (55)
T d3cx5i1 7 FFKRNAVFVGTIFAGA 22 (55)
T ss_dssp HHTTSCCCHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHH
Confidence 3444444444443333
Done!