BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034668
(87 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357519213|ref|XP_003629895.1| Ubiquitin [Medicago truncatula]
gi|355523917|gb|AET04371.1| Ubiquitin [Medicago truncatula]
Length = 232
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/21 (85%), Positives = 19/21 (90%)
Query: 67 KKKKVKLVVLQFYKVDDSGKV 87
K +KVKL VLQFYKVDDSGKV
Sbjct: 171 KHRKVKLAVLQFYKVDDSGKV 191
>gi|388510992|gb|AFK43562.1| unknown [Medicago truncatula]
Length = 155
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/21 (85%), Positives = 19/21 (90%)
Query: 67 KKKKVKLVVLQFYKVDDSGKV 87
K +KVKL VLQFYKVDDSGKV
Sbjct: 94 KHRKVKLAVLQFYKVDDSGKV 114
>gi|217071114|gb|ACJ83917.1| unknown [Medicago truncatula]
gi|217075699|gb|ACJ86209.1| unknown [Medicago truncatula]
Length = 155
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/21 (85%), Positives = 19/21 (90%)
Query: 67 KKKKVKLVVLQFYKVDDSGKV 87
K +KVKL VLQFYKVDDSGKV
Sbjct: 94 KHRKVKLAVLQFYKVDDSGKV 114
>gi|388523035|gb|AFK49579.1| unknown [Lotus japonicus]
Length = 155
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/21 (85%), Positives = 19/21 (90%)
Query: 67 KKKKVKLVVLQFYKVDDSGKV 87
K +KVKL VLQFYKVDDSGKV
Sbjct: 94 KHRKVKLAVLQFYKVDDSGKV 114
>gi|357485831|ref|XP_003613203.1| Ubiquitin [Medicago truncatula]
gi|355514538|gb|AES96161.1| Ubiquitin [Medicago truncatula]
Length = 155
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/21 (85%), Positives = 19/21 (90%)
Query: 67 KKKKVKLVVLQFYKVDDSGKV 87
K +KVKL VLQFYKVDDSGKV
Sbjct: 94 KHRKVKLAVLQFYKVDDSGKV 114
>gi|157128575|ref|XP_001655136.1| hypothetical protein AaeL_AAEL002368 [Aedes aegypti]
gi|108882200|gb|EAT46425.1| AAEL002368-PA, partial [Aedes aegypti]
Length = 130
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 58 QGVSAAITSKKKKVKLVVLQFYKVDDSGKV 87
+G + K+KKVKL VL++YK+D++GK+
Sbjct: 59 KGYPSQYKHKRKKVKLAVLKYYKIDENGKI 88
>gi|217071524|gb|ACJ84122.1| unknown [Medicago truncatula]
Length = 155
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/21 (80%), Positives = 18/21 (85%)
Query: 67 KKKKVKLVVLQFYKVDDSGKV 87
K +KVKL VLQFYKVDDSG V
Sbjct: 94 KHRKVKLAVLQFYKVDDSGTV 114
>gi|392574996|gb|EIW68131.1| hypothetical protein TREMEDRAFT_69584 [Tremella mesenterica DSM
1558]
Length = 636
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 12 QLPLVTVQQRTSLLLLQTLALPLLQTQFSHVKLNFPNSVYSCLNHYQG----VSAAITSK 67
++P+ V+QR S L TL L L+ T F HV P V + L Y G +S+ ITSK
Sbjct: 479 EVPVGVVEQRVSNLAQGTLCLILMTTPFEHVLGLIPKGVMAGLFWYMGTDALLSSGITSK 538
>gi|347978998|gb|AEP37835.1| ubiquitin [Plasmopara viticola]
Length = 124
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 64 ITSKKKKVKLVVLQFYKVDDSGKV 87
I K +KVKL VL+FYKVDD+GK+
Sbjct: 84 IKHKHRKVKLAVLKFYKVDDNGKI 107
>gi|325187138|emb|CCA21679.1| ubiquitin extension protein putative [Albugo laibachii Nc14]
Length = 308
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 64 ITSKKKKVKLVVLQFYKVDDSGKV 87
I K +KVKL VL++YKVDD+GK+
Sbjct: 123 IKHKHRKVKLAVLKYYKVDDNGKI 146
>gi|50307755|ref|XP_453871.1| ubiquitin-40S ribosomal protein S31 fusion protein [Kluyveromyces
lactis NRRL Y-1140]
gi|302393747|sp|P69061.2|RS27A_KLULA RecName: Full=Ubiquitin-40S ribosomal protein S27a; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|5531281|emb|CAB50894.1| ubiquitin fusion protein [Kluyveromyces lactis]
gi|49643005|emb|CAH00967.1| KLLA0D18304p [Kluyveromyces lactis]
Length = 150
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 64 ITSKKKKVKLVVLQFYKVDDSGKV 87
I K KKVKL VL +YKVDD GKV
Sbjct: 91 IRHKHKKVKLAVLNYYKVDDEGKV 114
>gi|15220742|ref|NP_173755.1| 40S ribosomal protein S27a-1 [Arabidopsis thaliana]
gi|302393740|sp|P59271.2|R27AA_ARATH RecName: Full=Ubiquitin-40S ribosomal protein S27a-1; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a-1; Flags: Precursor
gi|8778573|gb|AAF79581.1|AC007945_1 F28C11.5 [Arabidopsis thaliana]
gi|9295695|gb|AAF87001.1|AC005292_10 F26F24.28 [Arabidopsis thaliana]
gi|21553524|gb|AAM62617.1| ubiquitin extension protein, putative [Arabidopsis thaliana]
gi|89001023|gb|ABD59101.1| At1g23410 [Arabidopsis thaliana]
gi|332192263|gb|AEE30384.1| 40S ribosomal protein S27a-1 [Arabidopsis thaliana]
Length = 156
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 17/19 (89%)
Query: 69 KKVKLVVLQFYKVDDSGKV 87
KKVKL VLQFYKVD SGKV
Sbjct: 96 KKVKLAVLQFYKVDGSGKV 114
>gi|301107267|ref|XP_002902716.1| ubiquitin, putative [Phytophthora infestans T30-4]
gi|262098590|gb|EEY56642.1| ubiquitin, putative [Phytophthora infestans T30-4]
Length = 156
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 64 ITSKKKKVKLVVLQFYKVDDSGKV 87
I K +KVKL VL++YKVDD+GK+
Sbjct: 91 IKHKHRKVKLAVLKYYKVDDNGKI 114
>gi|348674168|gb|EGZ13987.1| hypothetical protein PHYSODRAFT_355036 [Phytophthora sojae]
Length = 156
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 64 ITSKKKKVKLVVLQFYKVDDSGKV 87
I K +KVKL VL++YKVDD+GK+
Sbjct: 91 IKHKHRKVKLAVLKYYKVDDNGKI 114
>gi|300791206|gb|ADK34019.1| ubiquitin-Like family 1 [Prionchulus punctatus]
Length = 181
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 20/21 (95%)
Query: 67 KKKKVKLVVLQFYKVDDSGKV 87
K+KKVKL VL++YKVD++GK+
Sbjct: 94 KRKKVKLAVLKYYKVDENGKI 114
>gi|254571679|ref|XP_002492949.1| ubiquitin-40S ribosomal protein S31 fusion protein [Komagataella
pastoris GS115]
gi|238032747|emb|CAY70770.1| Fusion protein that is cleaved to yield a ribosomal protein of the
small (40S) subunit and ubiquitin [Komagataella pastoris
GS115]
gi|328353038|emb|CCA39436.1| Ubiquitin-like protein [Komagataella pastoris CBS 7435]
Length = 150
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 64 ITSKKKKVKLVVLQFYKVDDSGKV 87
I K +KVKL VL +YKVDD GK+
Sbjct: 91 IKHKHRKVKLAVLNYYKVDDDGKI 114
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,142,505,849
Number of Sequences: 23463169
Number of extensions: 33464896
Number of successful extensions: 72898
Number of sequences better than 100.0: 280
Number of HSP's better than 100.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 72623
Number of HSP's gapped (non-prelim): 280
length of query: 87
length of database: 8,064,228,071
effective HSP length: 57
effective length of query: 30
effective length of database: 6,726,827,438
effective search space: 201804823140
effective search space used: 201804823140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)