BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034668
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P69061|RS27A_KLULA Ubiquitin-40S ribosomal protein S27a OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=ubi3 PE=1 SV=2
Length = 150
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 64 ITSKKKKVKLVVLQFYKVDDSGKV 87
I K KKVKL VL +YKVDD GKV
Sbjct: 91 IRHKHKKVKLAVLNYYKVDDEGKV 114
>sp|P59271|R27AA_ARATH Ubiquitin-40S ribosomal protein S27a-1 OS=Arabidopsis thaliana
GN=RPS27AA PE=1 SV=2
Length = 156
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 17/19 (89%)
Query: 69 KKVKLVVLQFYKVDDSGKV 87
KKVKL VLQFYKVD SGKV
Sbjct: 96 KKVKLAVLQFYKVDGSGKV 114
>sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=2
Length = 155
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 73 LVVLQFYKVDDSGKV 87
L VLQFYKVDDSGKV
Sbjct: 100 LAVLQFYKVDDSGKV 114
>sp|P31753|RS27A_ASPOF Ubiquitin-40S ribosomal protein S27a (Fragment) OS=Asparagus
officinalis PE=3 SV=2
Length = 118
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 73 LVVLQFYKVDDSGKV 87
L VLQFYKVDD+GKV
Sbjct: 64 LAVLQFYKVDDTGKV 78
>sp|P62981|RS27A_SOLTU Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3
PE=2 SV=2
Length = 156
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 73 LVVLQFYKVDDSGKV 87
L VLQFYKVDD+GKV
Sbjct: 100 LAVLQFYKVDDTGKV 114
>sp|P62980|RS27A_SOLLC Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum
GN=UBI3 PE=3 SV=2
Length = 156
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 73 LVVLQFYKVDDSGKV 87
L VLQFYKVDD+GKV
Sbjct: 100 LAVLQFYKVDDTGKV 114
>sp|P59272|RS27A_DAUCA Ubiquitin-40S ribosomal protein S27a (Fragment) OS=Daucus carota
PE=2 SV=2
Length = 143
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 73 LVVLQFYKVDDSGKV 87
L VLQFYKVD+SGKV
Sbjct: 100 LAVLQFYKVDESGKV 114
>sp|P14797|RS27A_DICDI Ubiquitin-40S ribosomal protein S27a OS=Dictyostelium discoideum
GN=ubqC PE=1 SV=2
Length = 154
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 69 KKVKLVVLQFYKVDDSGKV 87
+KVKL VL++YK D++GK+
Sbjct: 97 RKVKLAVLKYYKFDENGKI 115
>sp|P59232|R27AB_ARATH Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana
GN=RPS27AB PE=1 SV=2
Length = 157
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 13/15 (86%)
Query: 73 LVVLQFYKVDDSGKV 87
L VLQFYKVD SGKV
Sbjct: 100 LAVLQFYKVDGSGKV 114
>sp|P59233|R27AC_ARATH Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana
GN=RPS27AC PE=1 SV=2
Length = 157
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 73 LVVLQFYKVDDSGKV 87
L VLQFYK+D SGKV
Sbjct: 100 LAVLQFYKIDGSGKV 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,354,345
Number of Sequences: 539616
Number of extensions: 808867
Number of successful extensions: 2297
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2265
Number of HSP's gapped (non-prelim): 32
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)