Query 034668
Match_columns 87
No_of_seqs 79 out of 104
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 05:15:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0004 Ubiquitin/40S ribosoma 99.7 1.8E-17 4E-22 121.7 2.8 49 39-87 66-114 (156)
2 COG5272 UBI4 Ubiquitin [Posttr 94.3 0.0095 2.1E-07 35.9 -0.5 34 51-85 2-35 (57)
3 PRK00432 30S ribosomal protein 90.5 0.17 3.7E-06 30.7 1.5 14 72-85 2-15 (50)
4 cd01800 SF3a120_C Ubiquitin-li 66.2 4 8.7E-05 24.9 1.4 17 36-52 60-76 (76)
5 cd01793 Fubi Fubi ubiquitin-li 55.5 7.8 0.00017 23.4 1.4 12 38-49 63-74 (74)
6 KOG2435 Uncharacterized conser 52.4 7.6 0.00017 32.1 1.2 21 36-56 198-218 (323)
7 cd00781 ketosteroid_isomerase 48.4 23 0.00049 21.8 2.7 20 68-87 89-108 (122)
8 cd01814 NTGP5 Ubiquitin-like N 43.0 20 0.00044 25.5 2.0 26 39-64 84-109 (113)
9 cd01803 Ubiquitin Ubiquitin. U 39.3 20 0.00044 20.8 1.3 12 38-49 65-76 (76)
10 cd01806 Nedd8 Nebb8-like ubiq 30.6 34 0.00073 19.8 1.3 13 37-49 64-76 (76)
11 PF07366 SnoaL: SnoaL-like pol 28.5 40 0.00088 21.0 1.5 23 64-87 88-110 (126)
12 PTZ00044 ubiquitin; Provisiona 27.7 41 0.00088 19.8 1.3 13 37-49 64-76 (76)
13 PF12202 OSR1_C: Oxidative-str 27.0 43 0.00094 20.0 1.4 9 41-49 2-10 (38)
14 PF10091 Glycoamylase: Putativ 23.4 24 0.00053 26.9 -0.2 17 32-48 57-73 (234)
15 PF12828 PXB: PX-associated; 20.9 19 0.0004 25.7 -1.2 18 32-49 63-80 (137)
No 1
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.8e-17 Score=121.69 Aligned_cols=49 Identities=37% Similarity=0.491 Sum_probs=47.5
Q ss_pred cceEEEecCCCcccccccCcCCCcccccccceeeeeeeeeEEeCCCCCC
Q 034668 39 FSHVKLNFPNSVYSCLNHYQGVSAAITSKKKKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 39 ~~HlvLrlrg~~kkrkkK~YTTPKKiKHKhKKVKLAVLkyYKVDenGKV 87 (87)
--||+|||+||+++|||++|++||+++|+|+|++|++++||+||+||+|
T Consensus 66 tl~l~l~l~Gg~kkrkkk~~~~pk~~~~~~kk~~l~~~~y~kvd~ngki 114 (156)
T KOG0004|consen 66 TLHLVLRLRGGAKKRKKKSYTTPKKIKSKHKKVSLAVLKYYKVDENGKV 114 (156)
T ss_pred eEEEEEEecCCcccccccccccccccCCCccccccCCccceeeccCcch
Confidence 4699999999999999999999999999999999999999999999986
No 2
>COG5272 UBI4 Ubiquitin [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.0095 Score=35.86 Aligned_cols=34 Identities=15% Similarity=0.028 Sum_probs=30.2
Q ss_pred ccccccCcCCCcccccccceeeeeeeeeEEeCCCC
Q 034668 51 YSCLNHYQGVSAAITSKKKKVKLVVLQFYKVDDSG 85 (87)
Q Consensus 51 kkrkkK~YTTPKKiKHKhKKVKLAVLkyYKVDenG 85 (87)
.+++++.+++|+|.+|.+++++++++. +++++++
T Consensus 2 ~~~~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~ 35 (57)
T COG5272 2 AKPIKKATGGAAKPESQLAKAKDTRPE-KQYAEQD 35 (57)
T ss_pred CccccccccccccccchHHHHhhccch-hhhhhhc
Confidence 356799999999999999999999999 8887754
No 3
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=90.48 E-value=0.17 Score=30.70 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=12.2
Q ss_pred eeeeeeeEEeCCCC
Q 034668 72 KLVVLQFYKVDDSG 85 (87)
Q Consensus 72 KLAVLkyYKVDenG 85 (87)
|+++|+||+||++.
T Consensus 2 ~~~~~~~y~v~~~~ 15 (50)
T PRK00432 2 KMAKREYYEVDGGK 15 (50)
T ss_pred CcceeeeEEECCCE
Confidence 79999999998763
No 4
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=66.24 E-value=4 Score=24.93 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=13.5
Q ss_pred hhccceEEEecCCCccc
Q 034668 36 QTQFSHVKLNFPNSVYS 52 (87)
Q Consensus 36 ~~~~~HlvLrlrg~~kk 52 (87)
....-|++++++||.||
T Consensus 60 ~g~~l~v~~~~~gg~~~ 76 (76)
T cd01800 60 NGTIIHLQLKERGGRKK 76 (76)
T ss_pred CCCEEEEEEecCCCcCC
Confidence 45678999999998654
No 5
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=55.50 E-value=7.8 Score=23.37 Aligned_cols=12 Identities=8% Similarity=-0.189 Sum_probs=9.9
Q ss_pred ccceEEEecCCC
Q 034668 38 QFSHVKLNFPNS 49 (87)
Q Consensus 38 ~~~HlvLrlrg~ 49 (87)
.--|+++|++||
T Consensus 63 ~tl~l~~~l~GG 74 (74)
T cd01793 63 CTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEEecCCC
Confidence 346999999997
No 6
>KOG2435 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.39 E-value=7.6 Score=32.10 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=16.8
Q ss_pred hhccceEEEecCCCccccccc
Q 034668 36 QTQFSHVKLNFPNSVYSCLNH 56 (87)
Q Consensus 36 ~~~~~HlvLrlrg~~kkrkkK 56 (87)
-+||+||+||+||.+.+-+-.
T Consensus 198 w~qfn~L~LrvRGDGRsy~in 218 (323)
T KOG2435|consen 198 WSQFNTLYLRVRGDGRSYMIN 218 (323)
T ss_pred ccccceEEEEEecCCceEEEE
Confidence 479999999999998764433
No 7
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=48.39 E-value=23 Score=21.79 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=17.2
Q ss_pred cceeeeeeeeeEEeCCCCCC
Q 034668 68 KKKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 68 hKKVKLAVLkyYKVDenGKV 87 (87)
-+.+.+..+..|+++++|||
T Consensus 89 g~~~~~~~~~v~~~~~dGkI 108 (122)
T cd00781 89 GQPCVVRVIDVMRFDADGRI 108 (122)
T ss_pred CceEEEEEEEEEEECCCccC
Confidence 46688889999999989997
No 8
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=43.02 E-value=20 Score=25.46 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=19.3
Q ss_pred cceEEEecCCCcccccccCcCCCccc
Q 034668 39 FSHVKLNFPNSVYSCLNHYQGVSAAI 64 (87)
Q Consensus 39 ~~HlvLrlrg~~kkrkkK~YTTPKKi 64 (87)
-.|||+|-+...++-.|+...+|+.+
T Consensus 84 TmHvvlr~~~~~~~~~k~~~~~~~~~ 109 (113)
T cd01814 84 TMHVVVQPPLADKKTEKKVDKAPKAV 109 (113)
T ss_pred EEEEEecCCCCCccccccccCCcccC
Confidence 45999997776666677777777754
No 9
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=39.28 E-value=20 Score=20.78 Aligned_cols=12 Identities=17% Similarity=0.229 Sum_probs=9.8
Q ss_pred ccceEEEecCCC
Q 034668 38 QFSHVKLNFPNS 49 (87)
Q Consensus 38 ~~~HlvLrlrg~ 49 (87)
..-|+++|++||
T Consensus 65 ~~i~l~~~~~gg 76 (76)
T cd01803 65 STLHLVLRLRGG 76 (76)
T ss_pred CEEEEEEEccCC
Confidence 457999999987
No 10
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=30.58 E-value=34 Score=19.81 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=10.5
Q ss_pred hccceEEEecCCC
Q 034668 37 TQFSHVKLNFPNS 49 (87)
Q Consensus 37 ~~~~HlvLrlrg~ 49 (87)
...-|+++++|||
T Consensus 64 g~~i~l~~~~~gg 76 (76)
T cd01806 64 GSVLHLVLALRGG 76 (76)
T ss_pred CCEEEEEEEccCC
Confidence 4567999999987
No 11
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=28.51 E-value=40 Score=21.03 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=19.0
Q ss_pred cccccceeeeeeeeeEEeCCCCCC
Q 034668 64 ITSKKKKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 64 iKHKhKKVKLAVLkyYKVDenGKV 87 (87)
+....|++.+....+|++++ |||
T Consensus 88 ~~ptgk~v~~~~~~~~~~~~-gkI 110 (126)
T PF07366_consen 88 IPPTGKPVEFRGMSIFRFED-GKI 110 (126)
T ss_dssp BE-TTEEEEEEEEEEEEEET-TEE
T ss_pred cCCCCCEEEEEEEEEEEEEC-CEE
Confidence 45577899999999999987 886
No 12
>PTZ00044 ubiquitin; Provisional
Probab=27.72 E-value=41 Score=19.85 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=10.5
Q ss_pred hccceEEEecCCC
Q 034668 37 TQFSHVKLNFPNS 49 (87)
Q Consensus 37 ~~~~HlvLrlrg~ 49 (87)
...-|++++++||
T Consensus 64 ~~~i~l~~~~~gg 76 (76)
T PTZ00044 64 GSTIHMVLQLRGG 76 (76)
T ss_pred CCEEEEEEEccCC
Confidence 4567999999986
No 13
>PF12202 OSR1_C: Oxidative-stress-responsive kinase 1 C terminal; InterPro: IPR024678 Oxidative-stress-responsive kinase 1 (OSR1) is involved in the signalling cascade which activates Na/K/2Cl co-transporter during osmotic stress. This entry represents the CCT domain found in OSR1, STE20/SPS1-related kinase and in WNK activators []. This domain is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue F that may be functionally important. ; PDB: 2V3S_A 2LRU_A.
Probab=26.97 E-value=43 Score=19.98 Aligned_cols=9 Identities=11% Similarity=0.438 Sum_probs=6.1
Q ss_pred eEEEecCCC
Q 034668 41 HVKLNFPNS 49 (87)
Q Consensus 41 HlvLrlrg~ 49 (87)
.|+||++..
T Consensus 2 ~l~Lrv~d~ 10 (38)
T PF12202_consen 2 NLRLRVRDP 10 (38)
T ss_dssp EEEEEEC-T
T ss_pred cEEEEEecc
Confidence 478898875
No 14
>PF10091 Glycoamylase: Putative glucoamylase; InterPro: IPR019282 This domain has no known function.; PDB: 3EU8_C.
Probab=23.40 E-value=24 Score=26.86 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=12.6
Q ss_pred hhhhhhccceEEEecCC
Q 034668 32 LPLLQTQFSHVKLNFPN 48 (87)
Q Consensus 32 ~~~~~~~~~HlvLrlrg 48 (87)
=|++..|+||+.+++||
T Consensus 57 G~lF~~~~s~l~id~r~ 73 (234)
T PF10091_consen 57 GPLFEYQMSHLWIDFRG 73 (234)
T ss_dssp --GGGGTGGGSSS--TT
T ss_pred cccHHHHcCCeecCCCC
Confidence 68999999999999998
No 15
>PF12828 PXB: PX-associated; InterPro: IPR024555 The function of this domain is not known, but it is almost always found N-terminal to a PX domain (IPR001683 from INTERPRO).
Probab=20.91 E-value=19 Score=25.72 Aligned_cols=18 Identities=44% Similarity=0.685 Sum_probs=17.3
Q ss_pred hhhhhhccceEEEecCCC
Q 034668 32 LPLLQTQFSHVKLNFPNS 49 (87)
Q Consensus 32 ~~~~~~~~~HlvLrlrg~ 49 (87)
+|+|+.-|.|.|+.|||=
T Consensus 63 ~PlLr~~f~~fvltfP~l 80 (137)
T PF12828_consen 63 LPLLRFLFRRFVLTFPFL 80 (137)
T ss_pred cHHHHHHHHHHHHcCCCc
Confidence 899999999999999997
Done!