Query 034668
Match_columns 87
No_of_seqs 79 out of 104
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 08:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_f 40S ribosomal protein S 99.9 4.6E-23 1.6E-27 143.5 1.4 51 37-87 64-114 (152)
2 2xzm_9 RPS31E; ribosome, trans 99.7 2.4E-18 8.1E-23 125.5 1.4 52 36-87 58-109 (189)
3 1se9_A Ubiquitin family; ubiqu 96.6 0.0006 2.1E-08 46.8 1.5 25 39-65 96-120 (126)
4 1we7_A SF3A1 protein; structur 70.3 1.7 5.9E-05 27.3 1.3 15 38-52 100-114 (115)
5 3k9o_B Ubiquitin, UBB+1; E2-25 67.1 2.1 7.1E-05 25.3 1.2 20 37-56 65-84 (96)
6 3rt3_B Ubiquitin-like protein 57.4 3.6 0.00012 26.4 1.0 13 38-50 146-158 (159)
7 2gow_A HCG-1 protein, ubiquiti 54.3 8 0.00027 25.7 2.4 14 40-53 94-107 (125)
8 3dbh_I NEDD8; cell cycle, acti 45.3 5.1 0.00018 22.9 0.3 13 37-49 76-88 (88)
9 1ohp_A Steroid delta-isomerase 43.6 13 0.00046 20.8 1.9 19 69-87 91-109 (125)
10 1ndd_A NEDD8, protein (ubiquit 43.2 8.7 0.0003 21.0 1.0 13 37-49 64-76 (76)
11 1oh0_A Steroid delta-isomerase 41.1 19 0.00066 20.8 2.4 19 69-87 95-113 (131)
12 3n3k_B Ubiquitin; hydrolase, p 40.5 10 0.00034 21.4 1.0 13 38-50 68-80 (85)
13 2l7r_A Ubiquitin-like protein 40.3 8.4 0.00029 23.2 0.7 13 37-49 81-93 (93)
14 4hcn_B Polyubiquitin, ubiquiti 40.2 9.1 0.00031 23.1 0.9 12 38-49 87-98 (98)
15 4fbj_B NEDD8; effector-HOST ta 39.4 8.3 0.00028 22.8 0.6 15 37-51 64-78 (88)
16 3er7_A Uncharacterized NTF2-li 38.7 20 0.00068 23.2 2.4 20 68-87 94-113 (131)
17 2a15_A Hypothetical protein RV 38.5 22 0.00074 21.1 2.3 19 69-87 103-121 (139)
18 3vdz_A Ubiquitin-40S ribosomal 37.8 12 0.00041 23.3 1.2 12 38-49 100-111 (111)
19 3a9j_A Ubiquitin; protein comp 37.8 14 0.00047 20.1 1.3 13 37-49 64-76 (76)
20 2uyz_B Small ubiquitin-related 37.7 13 0.00043 21.0 1.2 13 37-49 67-79 (79)
21 2kan_A Uncharacterized protein 36.6 14 0.00049 22.4 1.3 14 37-50 79-92 (94)
22 1we6_A Splicing factor, putati 36.5 10 0.00036 23.4 0.7 14 37-50 95-108 (111)
23 1wyw_B Ubiquitin-like protein 36.2 14 0.00047 22.4 1.2 12 38-49 86-97 (97)
24 3phx_B Ubiquitin-like protein 35.3 14 0.00048 20.8 1.1 12 37-48 68-79 (79)
25 3u30_A Ubiquitin, linear DI-ub 35.2 7.4 0.00025 25.5 -0.2 11 39-49 162-172 (172)
26 3l0w_B Monoubiquitinated proli 34.1 14 0.00049 24.9 1.2 15 37-51 64-78 (169)
27 1wh3_A 59 kDa 2'-5'-oligoadeny 33.4 18 0.00061 20.7 1.3 14 37-50 71-84 (87)
28 3b08_A Polyubiquitin-C, ubiqui 32.6 17 0.00057 22.4 1.2 13 37-49 140-152 (152)
29 3mtn_B UBA80, ubcep1, ubiquiti 32.4 14 0.00047 20.8 0.7 14 37-50 67-80 (85)
30 1wy8_A NP95-like ring finger p 31.7 19 0.00066 20.7 1.3 14 37-50 73-86 (89)
31 2gex_A SNOL; alpha+beta barrel 31.2 33 0.0011 21.0 2.4 20 68-87 97-116 (152)
32 1wgd_A Homocysteine-responsive 29.5 17 0.00058 21.5 0.8 15 36-50 76-90 (93)
33 2ojr_A Ubiquitin; lanthide-bin 28.8 21 0.00071 22.1 1.2 12 38-49 100-111 (111)
34 3rga_A Epoxide hydrolase; NTF2 28.5 32 0.0011 24.4 2.3 20 68-87 96-115 (283)
35 3h3h_A Uncharacterized snoal-l 22.3 45 0.0015 19.6 1.7 12 76-87 102-113 (122)
36 3b1l_X E3 ubiquitin-protein li 26.5 20 0.0007 19.8 0.0 13 37-49 64-76 (76)
No 1
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.86 E-value=4.6e-23 Score=143.52 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=32.4
Q ss_pred hccceEEEecCCCcccccccCcCCCcccccccceeeeeeeeeEEeCCCCCC
Q 034668 37 TQFSHVKLNFPNSVYSCLNHYQGVSAAITSKKKKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 37 ~~~~HlvLrlrg~~kkrkkK~YTTPKKiKHKhKKVKLAVLkyYKVDenGKV 87 (87)
...-||++|++||+||||||+||||||+||+|||||||||+||+||+||||
T Consensus 64 gstL~Lvlrl~GGgKkrkKk~~t~Pkk~~~~~~~~~~~~~~~~~~~~~~~~ 114 (152)
T 3u5c_f 64 ESTLHLVLRLRGGGKKRKXXXXXXXXXXXXXXXXXXXXVLSYYKVDAEGKV 114 (152)
T ss_dssp ------------------CCCCCCCSCCCCCCCCCCCCCCCCSEECSSSCE
T ss_pred CCEEEEEeeccCCCcCcccccccccccccccccccccceeeEEEEccCCeE
Confidence 446799999999999999999999999999999999999999999999986
No 2
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.69 E-value=2.4e-18 Score=125.49 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=37.2
Q ss_pred hhccceEEEecCCCcccccccCcCCCcccccccceeeeeeeeeEEeCCCCCC
Q 034668 36 QTQFSHVKLNFPNSVYSCLNHYQGVSAAITSKKKKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 36 ~~~~~HlvLrlrg~~kkrkkK~YTTPKKiKHKhKKVKLAVLkyYKVDenGKV 87 (87)
...--|||||+|||.++|+|+.|+|||++||++|+||||+|+||+||+||+|
T Consensus 58 ~~STLhLvlRLrGG~~krkK~~~~tPK~~k~~kKkvkl~~Lk~y~Vd~~Gkv 109 (189)
T 2xzm_9 58 DDVTYYLSLKLLGGKKKKKKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKV 109 (189)
T ss_dssp --------------CCCCCCCCCCSSSCCCCCCCCCCCSCCCCEEEETTTEE
T ss_pred CCCEEEEEEecCCCcccccccccCCCccccccccccCCceeeEEEECCCceE
Confidence 4445699999999999999999999999999999999999999999999986
No 3
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.63 E-value=0.0006 Score=46.83 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=13.0
Q ss_pred cceEEEecCCCcccccccCcCCCcccc
Q 034668 39 FSHVKLNFPNSVYSCLNHYQGVSAAIT 65 (87)
Q Consensus 39 ~~HlvLrlrg~~kkrkkK~YTTPKKiK 65 (87)
.-|||+|++|+.++ |++|++|||..
T Consensus 96 tmhlVlrl~g~~kk--kk~~~~pkk~~ 120 (126)
T 1se9_A 96 TMHVIIQAPVTEKE--KKPKGDPKMNK 120 (126)
T ss_dssp EEEEEECCCSSCCC--C----------
T ss_pred EEEEEeccCCcccc--ccCCCCCCCCC
Confidence 46999999999886 89999999753
No 4
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=70.34 E-value=1.7 Score=27.32 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=11.7
Q ss_pred ccceEEEecCCCccc
Q 034668 38 QFSHVKLNFPNSVYS 52 (87)
Q Consensus 38 ~~~HlvLrlrg~~kk 52 (87)
..-||++|+|||.+|
T Consensus 100 ~~i~lv~rl~GGk~~ 114 (115)
T 1we7_A 100 AVIHLALKERSGPSS 114 (115)
T ss_dssp CEEEEEECCCSCCSC
T ss_pred CEEEEEEEcCCCCCC
Confidence 446999999999543
No 5
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=67.14 E-value=2.1 Score=25.32 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=10.1
Q ss_pred hccceEEEecCCCccccccc
Q 034668 37 TQFSHVKLNFPNSVYSCLNH 56 (87)
Q Consensus 37 ~~~~HlvLrlrg~~kkrkkK 56 (87)
...-||++|++||.+++++.
T Consensus 65 ~~~i~l~~r~~gG~~~~~~p 84 (96)
T 3k9o_B 65 ESTLHLVLRLRGYADLREDP 84 (96)
T ss_dssp TCEEEEEECCCC--------
T ss_pred CCEEEEEEEcCCCCccccCC
Confidence 34579999999998766543
No 6
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=57.37 E-value=3.6 Score=26.41 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=8.6
Q ss_pred ccceEEEecCCCc
Q 034668 38 QFSHVKLNFPNSV 50 (87)
Q Consensus 38 ~~~HlvLrlrg~~ 50 (87)
..-||++|+|||+
T Consensus 146 ~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 146 STVFMNLRLRGGG 158 (159)
T ss_dssp CEEEEEECCC---
T ss_pred CEEEEEEecCCCC
Confidence 4579999999996
No 7
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=54.33 E-value=8 Score=25.68 Aligned_cols=14 Identities=7% Similarity=-0.154 Sum_probs=11.6
Q ss_pred ceEEEecCCCcccc
Q 034668 40 SHVKLNFPNSVYSC 53 (87)
Q Consensus 40 ~HlvLrlrg~~kkr 53 (87)
-|||+|++++.++.
T Consensus 94 lhlv~r~~~~~~~~ 107 (125)
T 2gow_A 94 MHLVARETLPEPNS 107 (125)
T ss_dssp EEEEECSCCSSSSS
T ss_pred EEEEecCCCCcccc
Confidence 59999999987663
No 8
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=45.32 E-value=5.1 Score=22.93 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=10.3
Q ss_pred hccceEEEecCCC
Q 034668 37 TQFSHVKLNFPNS 49 (87)
Q Consensus 37 ~~~~HlvLrlrg~ 49 (87)
...-||++|++||
T Consensus 76 ~~~i~l~~rl~GG 88 (88)
T 3dbh_I 76 GSVLHLVLRLRGG 88 (88)
T ss_dssp TCEEEECCCCCCC
T ss_pred CCEEEEEEeCCCC
Confidence 3457999999987
No 9
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=43.57 E-value=13 Score=20.77 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=15.0
Q ss_pred ceeeeeeeeeEEeCCCCCC
Q 034668 69 KKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 69 KKVKLAVLkyYKVDenGKV 87 (87)
+.+.+.....|++++||||
T Consensus 91 ~~~~~~~~~~~~~~~dGkI 109 (125)
T 1ohp_A 91 RKTVVAPIDHFRFNGAGKV 109 (125)
T ss_dssp EEEEECCEEEEEECTTSCE
T ss_pred ceEEEEEEEEEEECCCCcE
Confidence 3456778889999888986
No 10
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=43.23 E-value=8.7 Score=20.99 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=8.5
Q ss_pred hccceEEEecCCC
Q 034668 37 TQFSHVKLNFPNS 49 (87)
Q Consensus 37 ~~~~HlvLrlrg~ 49 (87)
...-|+++|++||
T Consensus 64 g~~i~l~~~~~GG 76 (76)
T 1ndd_A 64 GSVLHLVLALRGG 76 (76)
T ss_dssp TCEEEEEECCC--
T ss_pred CCEEEEEEeCCCC
Confidence 3456899999987
No 11
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=41.14 E-value=19 Score=20.81 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=15.7
Q ss_pred ceeeeeeeeeEEeCCCCCC
Q 034668 69 KKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 69 KKVKLAVLkyYKVDenGKV 87 (87)
+.+.+.....|++|+||||
T Consensus 95 ~~~~~~~~~~~~~~~dGkI 113 (131)
T 1oh0_A 95 QPCALDVIDVMRFDEHGRI 113 (131)
T ss_dssp SEEEEEEEEEEEECTTSCE
T ss_pred cEEEEEEEEEEEECCCCcE
Confidence 4567788889999989987
No 12
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=40.46 E-value=10 Score=21.43 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=8.3
Q ss_pred ccceEEEecCCCc
Q 034668 38 QFSHVKLNFPNSV 50 (87)
Q Consensus 38 ~~~HlvLrlrg~~ 50 (87)
..-|+++|++||.
T Consensus 68 ~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 68 SALYLLLKLRGGG 80 (85)
T ss_dssp CEEEEEECCC---
T ss_pred CEEEEEEeccCCC
Confidence 4569999999983
No 13
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=40.31 E-value=8.4 Score=23.20 Aligned_cols=13 Identities=8% Similarity=-0.156 Sum_probs=10.6
Q ss_pred hccceEEEecCCC
Q 034668 37 TQFSHVKLNFPNS 49 (87)
Q Consensus 37 ~~~~HlvLrlrg~ 49 (87)
...-||++|++||
T Consensus 81 gstI~lv~rl~GG 93 (93)
T 2l7r_A 81 LTTLEVAGRMLGG 93 (93)
T ss_dssp SCEEEEECCCCCC
T ss_pred CCEEEEEEecCCC
Confidence 4457999999997
No 14
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=40.24 E-value=9.1 Score=23.09 Aligned_cols=12 Identities=17% Similarity=0.229 Sum_probs=9.9
Q ss_pred ccceEEEecCCC
Q 034668 38 QFSHVKLNFPNS 49 (87)
Q Consensus 38 ~~~HlvLrlrg~ 49 (87)
..-||++|+|||
T Consensus 87 ~~i~l~~rl~GG 98 (98)
T 4hcn_B 87 STLHLVLRLRGG 98 (98)
T ss_dssp EEEEEECBCSCC
T ss_pred CEEEEEEecCCC
Confidence 356999999997
No 15
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=39.42 E-value=8.3 Score=22.84 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=9.0
Q ss_pred hccceEEEecCCCcc
Q 034668 37 TQFSHVKLNFPNSVY 51 (87)
Q Consensus 37 ~~~~HlvLrlrg~~k 51 (87)
...-||++|+|||..
T Consensus 64 g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 64 GSVLHLVLALRGGGG 78 (88)
T ss_dssp TCEEEEECBCC----
T ss_pred CCEEEEEEECCCCCC
Confidence 345799999999954
No 16
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=38.68 E-value=20 Score=23.22 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=18.1
Q ss_pred cceeeeeeeeeEEeCCCCCC
Q 034668 68 KKKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 68 hKKVKLAVLkyYKVDenGKV 87 (87)
-+.+.+.....|++|+||||
T Consensus 94 G~~~~~~g~dv~~fd~dGkI 113 (131)
T 3er7_A 94 GSVFTQDGTDIARLNADGKI 113 (131)
T ss_dssp SCEEEEEEEEEEEECTTSCE
T ss_pred CCEEEEeeeEEEEEcCCCcE
Confidence 56899999999999999997
No 17
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=38.47 E-value=22 Score=21.15 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.3
Q ss_pred ceeeeeeeeeEEeCCCCCC
Q 034668 69 KKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 69 KKVKLAVLkyYKVDenGKV 87 (87)
+.+.+.....|+++++|||
T Consensus 103 ~~~~~~~~~~~~~~~dGkI 121 (139)
T 2a15_A 103 FTSEVRGVFTYRVNKAGLI 121 (139)
T ss_dssp EEEEEEEEEEEEECTTSCE
T ss_pred CEEEEEEEEEEEECCCCeE
Confidence 3467777889999889987
No 18
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=37.81 E-value=12 Score=23.33 Aligned_cols=12 Identities=17% Similarity=0.229 Sum_probs=9.1
Q ss_pred ccceEEEecCCC
Q 034668 38 QFSHVKLNFPNS 49 (87)
Q Consensus 38 ~~~HlvLrlrg~ 49 (87)
..-||++|+|||
T Consensus 100 s~I~l~~rl~GG 111 (111)
T 3vdz_A 100 STLHLVLRLRGG 111 (111)
T ss_dssp CEEEEEECCCC-
T ss_pred CEEEEEEecCCC
Confidence 356999999997
No 19
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=37.77 E-value=14 Score=20.14 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=10.1
Q ss_pred hccceEEEecCCC
Q 034668 37 TQFSHVKLNFPNS 49 (87)
Q Consensus 37 ~~~~HlvLrlrg~ 49 (87)
...-|+++|++||
T Consensus 64 g~~i~l~~~~~GG 76 (76)
T 3a9j_A 64 ESTLHLVLRLRGG 76 (76)
T ss_dssp TCEEEEEECCCCC
T ss_pred CCEEEEEEeCCCC
Confidence 3456899999987
No 20
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=37.72 E-value=13 Score=21.02 Aligned_cols=13 Identities=8% Similarity=-0.038 Sum_probs=9.5
Q ss_pred hccceEEEecCCC
Q 034668 37 TQFSHVKLNFPNS 49 (87)
Q Consensus 37 ~~~~HlvLrlrg~ 49 (87)
...-|+++|++||
T Consensus 67 ~~~i~l~~~~~GG 79 (79)
T 2uyz_B 67 EDVIEVYQEQTGG 79 (79)
T ss_dssp TEEEEEEECCCC-
T ss_pred CCEEEEEEeccCC
Confidence 3456999999987
No 21
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=36.58 E-value=14 Score=22.42 Aligned_cols=14 Identities=21% Similarity=-0.152 Sum_probs=11.4
Q ss_pred hccceEEEecCCCc
Q 034668 37 TQFSHVKLNFPNSV 50 (87)
Q Consensus 37 ~~~~HlvLrlrg~~ 50 (87)
...-||++|++||+
T Consensus 79 gstl~lv~r~~gg~ 92 (94)
T 2kan_A 79 FSEIVVFLKSINRA 92 (94)
T ss_dssp TEEEEEEECCCSSC
T ss_pred CCEEEEEEeCCCCC
Confidence 44579999999995
No 22
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=36.52 E-value=10 Score=23.39 Aligned_cols=14 Identities=7% Similarity=0.005 Sum_probs=11.1
Q ss_pred hccceEEEecCCCc
Q 034668 37 TQFSHVKLNFPNSV 50 (87)
Q Consensus 37 ~~~~HlvLrlrg~~ 50 (87)
...-||++|+|||.
T Consensus 95 g~~l~l~~r~~GGk 108 (111)
T 1we6_A 95 GEILTLSLRERSGP 108 (111)
T ss_dssp SCEEEEECSSCCSS
T ss_pred CCEEEEEEEcCCCC
Confidence 34569999999993
No 23
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=36.17 E-value=14 Score=22.37 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=9.9
Q ss_pred ccceEEEecCCC
Q 034668 38 QFSHVKLNFPNS 49 (87)
Q Consensus 38 ~~~HlvLrlrg~ 49 (87)
..-||++|++||
T Consensus 86 ~~I~l~~~~~GG 97 (97)
T 1wyw_B 86 DVIEVYQEQTGG 97 (97)
T ss_dssp CEEEEEESSSCC
T ss_pred CEEEEEEecCCC
Confidence 456999999997
No 24
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=35.28 E-value=14 Score=20.83 Aligned_cols=12 Identities=8% Similarity=0.108 Sum_probs=9.2
Q ss_pred hccceEEEecCC
Q 034668 37 TQFSHVKLNFPN 48 (87)
Q Consensus 37 ~~~~HlvLrlrg 48 (87)
...-||++|+||
T Consensus 68 ~~~l~l~~rl~G 79 (79)
T 3phx_B 68 LSTVFMNLRLRG 79 (79)
T ss_dssp TCEEEEEECCBC
T ss_pred CCEEEEEEecCC
Confidence 345699999987
No 25
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=35.22 E-value=7.4 Score=25.47 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=4.7
Q ss_pred cceEEEecCCC
Q 034668 39 FSHVKLNFPNS 49 (87)
Q Consensus 39 ~~HlvLrlrg~ 49 (87)
.-||++|+|||
T Consensus 162 tl~l~~rlrgG 172 (172)
T 3u30_A 162 TLHLVLRLRGG 172 (172)
T ss_dssp EEEECC-----
T ss_pred EEEEEEecCCC
Confidence 46899999987
No 26
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=34.14 E-value=14 Score=24.89 Aligned_cols=15 Identities=13% Similarity=0.020 Sum_probs=10.0
Q ss_pred hccceEEEecCCCcc
Q 034668 37 TQFSHVKLNFPNSVY 51 (87)
Q Consensus 37 ~~~~HlvLrlrg~~k 51 (87)
...-||++|++||.+
T Consensus 64 gstI~Lvlrl~GG~k 78 (169)
T 3l0w_B 64 ESTLHLVLRLRGGGG 78 (169)
T ss_dssp TCEEEEEECCCC---
T ss_pred CCEEEEEEEeccccc
Confidence 345799999999943
No 27
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=33.44 E-value=18 Score=20.68 Aligned_cols=14 Identities=0% Similarity=-0.209 Sum_probs=11.3
Q ss_pred hccceEEEecCCCc
Q 034668 37 TQFSHVKLNFPNSV 50 (87)
Q Consensus 37 ~~~~HlvLrlrg~~ 50 (87)
...-||++|++||.
T Consensus 71 g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 71 SDTLILSKKKGSGP 84 (87)
T ss_dssp TEEEEEEECSCCCS
T ss_pred CCEEEEEEeccCCC
Confidence 45679999999983
No 28
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=32.59 E-value=17 Score=22.45 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=9.4
Q ss_pred hccceEEEecCCC
Q 034668 37 TQFSHVKLNFPNS 49 (87)
Q Consensus 37 ~~~~HlvLrlrg~ 49 (87)
...-||++|+|||
T Consensus 140 ~~~i~l~~r~~GG 152 (152)
T 3b08_A 140 ESTLHLVLRLRGG 152 (152)
T ss_dssp TCEEEEEECCCC-
T ss_pred CCEEEEEEecCCC
Confidence 3456999999987
No 29
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=32.44 E-value=14 Score=20.76 Aligned_cols=14 Identities=7% Similarity=-0.118 Sum_probs=10.4
Q ss_pred hccceEEEecCCCc
Q 034668 37 TQFSHVKLNFPNSV 50 (87)
Q Consensus 37 ~~~~HlvLrlrg~~ 50 (87)
...-||++|++||.
T Consensus 67 ~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 67 WSTLFLLLRLRGGG 80 (85)
T ss_dssp TCEEEEECCCCCC-
T ss_pred CCEEEEEEECcCCC
Confidence 34569999999983
No 30
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.74 E-value=19 Score=20.68 Aligned_cols=14 Identities=0% Similarity=-0.031 Sum_probs=11.3
Q ss_pred hccceEEEecCCCc
Q 034668 37 TQFSHVKLNFPNSV 50 (87)
Q Consensus 37 ~~~~HlvLrlrg~~ 50 (87)
...-||++|++||.
T Consensus 73 g~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 73 NDIIQLLVRPDSGP 86 (89)
T ss_dssp TCEEEEEECCCCSS
T ss_pred CCEEEEEEeCCCCC
Confidence 45679999999983
No 31
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=31.21 E-value=33 Score=20.98 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.4
Q ss_pred cceeeeeeeeeEEeCCCCCC
Q 034668 68 KKKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 68 hKKVKLAVLkyYKVDenGKV 87 (87)
-+.+.+.....|+++++|||
T Consensus 97 G~~~~~~~~~~~~~~d~GkI 116 (152)
T 2gex_A 97 GRKVRWTYLEELRFSEAGKV 116 (152)
T ss_dssp CCEEEEEEEEEEEECTTSCE
T ss_pred CCEEEEEEEEEEEEecCCEE
Confidence 35678889999999877986
No 32
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.53 E-value=17 Score=21.48 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=11.9
Q ss_pred hhccceEEEecCCCc
Q 034668 36 QTQFSHVKLNFPNSV 50 (87)
Q Consensus 36 ~~~~~HlvLrlrg~~ 50 (87)
....-||++|++||.
T Consensus 76 ~~~~i~lv~~~~gg~ 90 (93)
T 1wgd_A 76 KRHVLHLVCNVKSGP 90 (93)
T ss_dssp CSEEEEEECCCCCCC
T ss_pred CCCEEEEEeCCCCCC
Confidence 345679999999994
No 33
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=28.83 E-value=21 Score=22.06 Aligned_cols=12 Identities=17% Similarity=0.229 Sum_probs=8.8
Q ss_pred ccceEEEecCCC
Q 034668 38 QFSHVKLNFPNS 49 (87)
Q Consensus 38 ~~~HlvLrlrg~ 49 (87)
..-||++|++||
T Consensus 100 s~I~l~~rl~GG 111 (111)
T 2ojr_A 100 STLHLVLRLRGG 111 (111)
T ss_dssp CEEEEEECCCC-
T ss_pred CEEEEEEeCCCC
Confidence 346899999987
No 34
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=28.52 E-value=32 Score=24.41 Aligned_cols=20 Identities=15% Similarity=0.386 Sum_probs=17.3
Q ss_pred cceeeeeeeeeEEeCCCCCC
Q 034668 68 KKKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 68 hKKVKLAVLkyYKVDenGKV 87 (87)
.+.+.+.....|++|+||||
T Consensus 96 g~~v~~~gi~v~r~d~dGkI 115 (283)
T 3rga_A 96 QRRGRTRVMGVIEVGEDGLI 115 (283)
T ss_dssp GGCEEEEEEEEEEECTTSCE
T ss_pred cceEEEEEEEEEEECCCCcE
Confidence 34588999999999999997
No 35
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=22.27 E-value=45 Score=19.64 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=10.6
Q ss_pred eeeEEeCCCCCC
Q 034668 76 LQFYKVDDSGKV 87 (87)
Q Consensus 76 LkyYKVDenGKV 87 (87)
...|++|+||||
T Consensus 102 ~~~~~~~~dGkI 113 (122)
T 3h3h_A 102 LEVFHFGPDRRV 113 (122)
T ss_dssp EEEEEECTTSSE
T ss_pred EEEEEECCCCcE
Confidence 778999999997
No 36
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=26.46 E-value=20 Score=19.81 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=9.8
Q ss_pred hccceEEEecCCC
Q 034668 37 TQFSHVKLNFPNS 49 (87)
Q Consensus 37 ~~~~HlvLrlrg~ 49 (87)
...-||++|+||.
T Consensus 64 g~~i~l~~rlrg~ 76 (76)
T 3b1l_X 64 QSIVHIVQRPRRR 76 (76)
Confidence 4456999999984
Done!