Query 034668
Match_columns 87
No_of_seqs 79 out of 104
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 08:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034668.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034668hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ohpa1 d.17.4.3 (A:1-125) Del 73.0 0.89 6.5E-05 25.2 1.9 19 69-87 91-109 (125)
2 d1oh0a_ d.17.4.3 (A:) Delta-5- 69.2 1.5 0.00011 24.6 2.4 20 68-87 92-111 (125)
3 d2a15a1 d.17.4.3 (A:5-136) Hyp 63.9 2.2 0.00016 23.7 2.3 20 68-87 98-117 (132)
4 d2gexa1 d.17.4.9 (A:2-139) Nog 63.9 2.2 0.00016 24.6 2.4 22 66-87 94-115 (138)
5 d1ogwa_ d.15.1.1 (A:) Ubiquiti 60.2 1.7 0.00012 24.2 1.3 12 38-49 65-76 (76)
6 d1we6a_ d.15.1.1 (A:) Splicing 47.5 2.5 0.00018 26.0 0.6 11 39-49 97-107 (111)
7 d2zeqa1 d.15.1.1 (A:1-78) Ubiq 34.8 6.6 0.00048 22.0 1.1 12 38-49 67-78 (78)
8 d1m98a2 d.17.4.6 (A:176-317) O 21.0 23 0.0017 22.3 1.9 16 72-87 110-125 (142)
9 d3dxoa1 d.17.4.19 (A:1-117) Un 20.9 29 0.0021 19.2 2.2 19 69-87 90-108 (117)
10 d3ec9a1 d.17.4.10 (A:10-139) U 20.0 21 0.0016 19.3 1.4 19 68-87 94-112 (130)
No 1
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}
Probab=72.99 E-value=0.89 Score=25.17 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=16.3
Q ss_pred ceeeeeeeeeEEeCCCCCC
Q 034668 69 KKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 69 KKVKLAVLkyYKVDenGKV 87 (87)
..+.+.+...|++|+||||
T Consensus 91 ~~~~~~~~~~~~~d~dGkI 109 (125)
T d1ohpa1 91 RKTVVAPIDHFRFNGAGKV 109 (125)
T ss_dssp EEEEECCEEEEEECTTSCE
T ss_pred ceEEEEEEEEEEECCCCeE
Confidence 5667888899999999997
No 2
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Probab=69.16 E-value=1.5 Score=24.62 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=16.6
Q ss_pred cceeeeeeeeeEEeCCCCCC
Q 034668 68 KKKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 68 hKKVKLAVLkyYKVDenGKV 87 (87)
-+.+.+.....|++|+||||
T Consensus 92 g~~~~~~~~~~~~~d~dGkI 111 (125)
T d1oh0a_ 92 GQPCALDVIDVMRFDEHGRI 111 (125)
T ss_dssp SSEEEEEEEEEEEECTTSCE
T ss_pred cceEEEEEEEEEEECCCCeE
Confidence 34567888899999999997
No 3
>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=63.95 E-value=2.2 Score=23.72 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.3
Q ss_pred cceeeeeeeeeEEeCCCCCC
Q 034668 68 KKKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 68 hKKVKLAVLkyYKVDenGKV 87 (87)
-+.+-+.....|+|++||||
T Consensus 98 G~~~~~~~v~~~~~~~dGkI 117 (132)
T d2a15a1 98 GFTSEVRGVFTYRVNKAGLI 117 (132)
T ss_dssp TEEEEEEEEEEEEECTTSCE
T ss_pred ceeEEEEEEEEEEEcCCCeE
Confidence 44566778889999999997
No 4
>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]}
Probab=63.90 E-value=2.2 Score=24.61 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.0
Q ss_pred cccceeeeeeeeeEEeCCCCCC
Q 034668 66 SKKKKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 66 HKhKKVKLAVLkyYKVDenGKV 87 (87)
-.-+.+.+.....|+++|||||
T Consensus 94 ~tG~~v~~~~~~~~~~~d~GkI 115 (138)
T d2gexa1 94 PTGRKVRWTYLEELRFSEAGKV 115 (138)
T ss_dssp CCCCEEEEEEEEEEEECTTSCE
T ss_pred CcccEEEEEEEEEEEEccCCEE
Confidence 3457889999999999999997
No 5
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.19 E-value=1.7 Score=24.21 Aligned_cols=12 Identities=17% Similarity=0.229 Sum_probs=10.2
Q ss_pred ccceEEEecCCC
Q 034668 38 QFSHVKLNFPNS 49 (87)
Q Consensus 38 ~~~HlvLrlrg~ 49 (87)
..-||++|+|||
T Consensus 65 s~I~L~~rlrgG 76 (76)
T d1ogwa_ 65 STLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEECTTCC
T ss_pred CEEEEEEecCCC
Confidence 467999999997
No 6
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=47.47 E-value=2.5 Score=25.99 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=9.7
Q ss_pred cceEEEecCCC
Q 034668 39 FSHVKLNFPNS 49 (87)
Q Consensus 39 ~~HlvLrlrg~ 49 (87)
--||++|+|||
T Consensus 97 ti~L~lr~rGG 107 (111)
T d1we6a_ 97 ILTLSLRERSG 107 (111)
T ss_dssp EEEEECSSCCS
T ss_pred EEEEEeeCCCC
Confidence 45999999998
No 7
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.83 E-value=6.6 Score=22.00 Aligned_cols=12 Identities=8% Similarity=0.050 Sum_probs=9.4
Q ss_pred ccceEEEecCCC
Q 034668 38 QFSHVKLNFPNS 49 (87)
Q Consensus 38 ~~~HlvLrlrg~ 49 (87)
..-||++|+||.
T Consensus 67 sti~lv~R~rg~ 78 (78)
T d2zeqa1 67 SIVHIVQRPRRR 78 (78)
T ss_dssp CEEEEEESSCCC
T ss_pred CEEEEEeccCCC
Confidence 456999999983
No 8
>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=21.01 E-value=23 Score=22.34 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=12.7
Q ss_pred eeeeeeeEEeCCCCCC
Q 034668 72 KLVVLQFYKVDDSGKV 87 (87)
Q Consensus 72 KLAVLkyYKVDenGKV 87 (87)
-+.+.-.|.+|++|||
T Consensus 110 ~vn~a~~F~ln~~GkI 125 (142)
T d1m98a2 110 GMNIAWRFLLNPENKV 125 (142)
T ss_dssp CEEEEEEEEECTTSCE
T ss_pred eeeeEEEEEECCCCcE
Confidence 4556667999999997
No 9
>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=20.93 E-value=29 Score=19.21 Aligned_cols=19 Identities=5% Similarity=0.043 Sum_probs=15.6
Q ss_pred ceeeeeeeeeEEeCCCCCC
Q 034668 69 KKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 69 KKVKLAVLkyYKVDenGKV 87 (87)
+.+-+.-..++.+|++|||
T Consensus 90 ~~~~~~G~d~~~~~~dGkI 108 (117)
T d3dxoa1 90 GDDVAGGTDVVSLNTEGRI 108 (117)
T ss_dssp SCEEEEEEEEEEECTTSSE
T ss_pred CCeEEEEEEEEEECCCCCE
Confidence 3456788899999999997
No 10
>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]}
Probab=20.00 E-value=21 Score=19.35 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=14.8
Q ss_pred cceeeeeeeeeEEeCCCCCC
Q 034668 68 KKKVKLVVLQFYKVDDSGKV 87 (87)
Q Consensus 68 hKKVKLAVLkyYKVDenGKV 87 (87)
-+.+.+.....|++ +||||
T Consensus 94 G~~~~~~~~~~~~~-~dGkI 112 (130)
T d3ec9a1 94 GKSFECRVAHVWRV-DAGKI 112 (130)
T ss_dssp CCEEEEEEEEEEEE-ETTEE
T ss_pred CCEEEEEEEEEEEE-ECCEE
Confidence 35577888899999 57986
Done!